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Conserved domains on  [gi|499825958|ref|WP_011506692|]
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Rz-like lysis system protein LysB [Chromohalobacter salexigens]

Protein Classification

LysB family phage lysis regulatory protein( domain architecture ID 10022485)

LysB family phage lysis regulatory protein similar to Escherichia virus P2 probable spanin, inner membrane subunit (also known as i-spanin or LysB), a component of the spanin complex that disrupts the host outer membrane and participates in cell lysis during virus exit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
phage_LysB TIGR03495
phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis ...
 14-150 4.74e-42

phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.


:

Pssm-ID: 274606  Cd Length: 135  Bit Score: 136.38  E-value: 4.74e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499825958   14 KIWLVLIGTGVvgAGGWFAWQEYRTALTDAASARQALDAAQAENAQRQLVIDVLWQNAQRLEEQRQQLNDTKADLERTAS 93
Cdd:TIGR03495   1 RTLIVLLVLLV--AGLGWQSQRLRNARADLERANRALKAQQAELAMKANQLIVLLALAKRNEEAQAQLRQQLAQARALLA 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 499825958   94 NRLTRLRELIHENAELRAWAGTRLPDAVIRLRERPAVTGATDYRQALRDTQPMQPPR 150
Cdd:TIGR03495  79 QREQRIERLKRENEDLRRWADTPLPDDVIRLRQRPALTGAADYRQWLSEGDALPDAG 135
 
Name Accession Description Interval E-value
phage_LysB TIGR03495
phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis ...
 14-150 4.74e-42

phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.


Pssm-ID: 274606  Cd Length: 135  Bit Score: 136.38  E-value: 4.74e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499825958   14 KIWLVLIGTGVvgAGGWFAWQEYRTALTDAASARQALDAAQAENAQRQLVIDVLWQNAQRLEEQRQQLNDTKADLERTAS 93
Cdd:TIGR03495   1 RTLIVLLVLLV--AGLGWQSQRLRNARADLERANRALKAQQAELAMKANQLIVLLALAKRNEEAQAQLRQQLAQARALLA 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 499825958   94 NRLTRLRELIHENAELRAWAGTRLPDAVIRLRERPAVTGATDYRQALRDTQPMQPPR 150
Cdd:TIGR03495  79 QREQRIERLKRENEDLRRWADTPLPDDVIRLRQRPALTGAADYRQWLSEGDALPDAG 135
PilO COG3167
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];
17-90 2.34e-03

Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];


Pssm-ID: 442400 [Multi-domain]  Cd Length: 202  Bit Score: 36.85  E-value: 2.34e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499825958  17 LVLIGTGVVGAGGWFAWQEYRtaltdaasarQALDAAQAENAQRQLVIDVLWQNAQRLEEQRQQLNDTKADLER 90
Cdd:COG3167   25 LLLLVLLVLALGYFFLISPQL----------EELEELEAEEAQLKQELEKKQAKAANLPALKAQLEELEQQLGE 88
 
Name Accession Description Interval E-value
phage_LysB TIGR03495
phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis ...
 14-150 4.74e-42

phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.


Pssm-ID: 274606  Cd Length: 135  Bit Score: 136.38  E-value: 4.74e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499825958   14 KIWLVLIGTGVvgAGGWFAWQEYRTALTDAASARQALDAAQAENAQRQLVIDVLWQNAQRLEEQRQQLNDTKADLERTAS 93
Cdd:TIGR03495   1 RTLIVLLVLLV--AGLGWQSQRLRNARADLERANRALKAQQAELAMKANQLIVLLALAKRNEEAQAQLRQQLAQARALLA 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 499825958   94 NRLTRLRELIHENAELRAWAGTRLPDAVIRLRERPAVTGATDYRQALRDTQPMQPPR 150
Cdd:TIGR03495  79 QREQRIERLKRENEDLRRWADTPLPDDVIRLRQRPALTGAADYRQWLSEGDALPDAG 135
PilO COG3167
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];
17-90 2.34e-03

Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];


Pssm-ID: 442400 [Multi-domain]  Cd Length: 202  Bit Score: 36.85  E-value: 2.34e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499825958  17 LVLIGTGVVGAGGWFAWQEYRtaltdaasarQALDAAQAENAQRQLVIDVLWQNAQRLEEQRQQLNDTKADLER 90
Cdd:COG3167   25 LLLLVLLVLALGYFFLISPQL----------EELEELEAEEAQLKQELEKKQAKAANLPALKAQLEELEQQLGE 88
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
33-142 9.07e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 35.66  E-value: 9.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499825958   33 WQEYRTALTDAASARQALDAAQAENAQRQLVIDVLWQNAQRLEEQRQQLNDTKADLErtasNRLTRLRELIHEN-AELRA 111
Cdd:COG4913   663 VASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLE----KELEQAEEELDELqDRLEA 738

                          90       100       110
                  ....*....|....*....|....*....|.
gi 499825958  112 WAGTRLPDAVIRLRERPAVTGATDYRQALRD 142
Cdd:COG4913   739 AEDLARLELRALLEERFAAALGDAVERELRE 769
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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