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Conserved domains on  [gi|504448589|ref|WP_014635691|]
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MULTISPECIES: DUF536 domain-containing protein [Streptococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF536 pfam04394
Protein of unknown function, DUF536; This family aligns the C-terminal region from several ...
 104-146 6.32e-03

Protein of unknown function, DUF536; This family aligns the C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.


:

Pssm-ID: 282276  Cd Length: 43  Bit Score: 33.17  E-value: 6.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 504448589  104 DEQMRVKDVQIAEKDKQLDQQQQLTAKAMADKETLKLELEEAK 146
Cdd:pfam04394   1 DEQLRVKDQQIAEKDKQLDQQQQLTLKAMKDIEQLKLELQEAK 43
HTH_CRP super family cl46859
helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic ...
 6-47 8.71e-03

helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.


The actual alignment was detected with superfamily member pfam08279:

Pssm-ID: 481199 [Multi-domain]  Cd Length: 52  Bit Score: 33.17  E-value: 8.71e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 504448589    6 TVSELADILGVSRQAVNNRVKSLpeedldkNEKGVTVVKRSG 47
Cdd:pfam08279  15 SGQELAEKLGVSRRTIRRDIKIL-------EELGVPIEAEPG 49
 
Name Accession Description Interval E-value
DUF536 pfam04394
Protein of unknown function, DUF536; This family aligns the C-terminal region from several ...
 104-146 6.32e-03

Protein of unknown function, DUF536; This family aligns the C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.


Pssm-ID: 282276  Cd Length: 43  Bit Score: 33.17  E-value: 6.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 504448589  104 DEQMRVKDVQIAEKDKQLDQQQQLTAKAMADKETLKLELEEAK 146
Cdd:pfam04394   1 DEQLRVKDQQIAEKDKQLDQQQQLTLKAMKDIEQLKLELQEAK 43
HTH_11 pfam08279
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
 6-47 8.71e-03

HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.


Pssm-ID: 429896 [Multi-domain]  Cd Length: 52  Bit Score: 33.17  E-value: 8.71e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 504448589    6 TVSELADILGVSRQAVNNRVKSLpeedldkNEKGVTVVKRSG 47
Cdd:pfam08279  15 SGQELAEKLGVSRRTIRRDIKIL-------EELGVPIEAEPG 49
 
Name Accession Description Interval E-value
DUF536 pfam04394
Protein of unknown function, DUF536; This family aligns the C-terminal region from several ...
 104-146 6.32e-03

Protein of unknown function, DUF536; This family aligns the C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.


Pssm-ID: 282276  Cd Length: 43  Bit Score: 33.17  E-value: 6.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 504448589  104 DEQMRVKDVQIAEKDKQLDQQQQLTAKAMADKETLKLELEEAK 146
Cdd:pfam04394   1 DEQLRVKDQQIAEKDKQLDQQQQLTLKAMKDIEQLKLELQEAK 43
HTH_11 pfam08279
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
 6-47 8.71e-03

HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.


Pssm-ID: 429896 [Multi-domain]  Cd Length: 52  Bit Score: 33.17  E-value: 8.71e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 504448589    6 TVSELADILGVSRQAVNNRVKSLpeedldkNEKGVTVVKRSG 47
Cdd:pfam08279  15 SGQELAEKLGVSRRTIRRDIKIL-------EELGVPIEAEPG 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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