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Conserved domains on  [gi|505199734|ref|WP_015386836|]
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phage tail protein [Cronobacter sakazakii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
gpI super family cl42037
Bacteriophage P2-related tail formation protein [Mobilome: prophages, transposons];
48-113 3.51e-05

Bacteriophage P2-related tail formation protein [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG4385:

Pssm-ID: 443511  Cd Length: 155  Bit Score: 42.21  E-value: 3.51e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505199734  48 DPLTCAEPLLNLLAYDRDVTRFD-GEPLALFRRRVAYAFVNARDAGSVEGFINIFERLGIGyVELQE 113
Cdd:COG4385   38 NPDTCPAALLPWLAWALSVDGWDeAWSEAVKRALIKAAIEIHRHKGTPAAVRRVLEALGYD-IEVTE 103
 
Name Accession Description Interval E-value
gpI COG4385
Bacteriophage P2-related tail formation protein [Mobilome: prophages, transposons];
48-113 3.51e-05

Bacteriophage P2-related tail formation protein [Mobilome: prophages, transposons];


Pssm-ID: 443511  Cd Length: 155  Bit Score: 42.21  E-value: 3.51e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505199734  48 DPLTCAEPLLNLLAYDRDVTRFD-GEPLALFRRRVAYAFVNARDAGSVEGFINIFERLGIGyVELQE 113
Cdd:COG4385   38 NPDTCPAALLPWLAWALSVDGWDeAWSEAVKRALIKAAIEIHRHKGTPAAVRRVLEALGYD-IEVTE 103
 
Name Accession Description Interval E-value
gpI COG4385
Bacteriophage P2-related tail formation protein [Mobilome: prophages, transposons];
48-113 3.51e-05

Bacteriophage P2-related tail formation protein [Mobilome: prophages, transposons];


Pssm-ID: 443511  Cd Length: 155  Bit Score: 42.21  E-value: 3.51e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505199734  48 DPLTCAEPLLNLLAYDRDVTRFD-GEPLALFRRRVAYAFVNARDAGSVEGFINIFERLGIGyVELQE 113
Cdd:COG4385   38 NPDTCPAALLPWLAWALSVDGWDeAWSEAVKRALIKAAIEIHRHKGTPAAVRRVLEALGYD-IEVTE 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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