|
Name |
Accession |
Description |
Interval |
E-value |
| Nth |
COG0177 |
Endonuclease III [Replication, recombination and repair]; |
16-197 |
8.63e-88 |
|
Endonuclease III [Replication, recombination and repair];
Pssm-ID: 439947 [Multi-domain] Cd Length: 198 Bit Score: 256.95 E-value: 8.63e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 16 LQTINEMYPDAKSELIWDNKFHLLCAVLMSAQTTDKMVNRVMPKFMQDYPTPKDLAQASIIEIEQHISQIGLYHSKAKHL 95
Cdd:COG0177 1 LERLKELYPDAKTELDYRDPFELLVATILSAQTTDERVNKATPRLFARYPTPEALAAADLEELEELIRPIGLYRNKAKNI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 96 KAMAKILVHKYHSEIPPDKKILVTLPGVGEKTANVVLADGYGVPAIAVDTHVARIAKRFHIVDQNaKPLQIEKRLEQILP 175
Cdd:COG0177 81 IALARILVEKYGGEVPETREELESLPGVGRKTANVVLNFAFGKPAIAVDTHVHRVSNRLGLVPGK-DPEEVEKDLMKLIP 159
|
170 180
....*....|....*....|..
gi 1501234483 176 KNEWIHTHHAMILFGRYSMTAR 197
Cdd:COG0177 160 KEYWGDLHHLLILHGRYICKAR 181
|
|
| nth |
TIGR01083 |
endonuclease III; This equivalog model identifes nth members of the pfam00730 superfamily ... |
10-197 |
1.21e-75 |
|
endonuclease III; This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273434 [Multi-domain] Cd Length: 192 Bit Score: 226.11 E-value: 1.21e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 10 KQARQVLQTINEMYPDAKSELIWDNKFHLLCAVLMSAQTTDKMVNRVMPKFMQDYPTPKDLAQASIIEIEQHISQIGLYH 89
Cdd:TIGR01083 2 QKAQEILERLRKNYPHPTTELDFNNPFELLVATILSAQATDKRVNKATPKLFEVYPTPQALAQAGLEELEEYIKSIGLYR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 90 SKAKHLKAMAKILVHKYHSEIPPDKKILVTLPGVGEKTANVVLADGYGVPAIAVDTHVARIAKRFHIVDQNaKPLQIEKR 169
Cdd:TIGR01083 82 NKAKNIIELCRKLVERYGGEVPEDREELVKLPGVGRKTANVVLNVAFGIPAIAVDTHVFRVSNRLGLSKGK-DPIKVEED 160
|
170 180
....*....|....*....|....*...
gi 1501234483 170 LEQILPKNEWIHTHHAMILFGRYSMTAR 197
Cdd:TIGR01083 161 LMKLVPREFWVKLHHWLILHGRYTCKAR 188
|
|
| ENDO3c |
smart00478 |
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ... |
44-192 |
3.73e-58 |
|
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Pssm-ID: 214684 [Multi-domain] Cd Length: 149 Bit Score: 180.15 E-value: 3.73e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 44 MSAQTTDKMVNRVMPKFMQDYPTPKDLAQASIIEIEQHISQIGLYHSKAKHLKAMAKILVHKYHSEIPPDKKILVTLPGV 123
Cdd:smart00478 1 LSQQTTDERVNKATERLFEKFPTPEDLAAADEEELEELIRGLGFYRRKARYLIELARILVEEYGGEVPDDREELLKLPGV 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1501234483 124 GEKTANVVLADGYGVPAIAVDTHVARIAKRFHIVDQNAKPLQIEKRLEQILPKNEWIHTHHAMILFGRY 192
Cdd:smart00478 81 GRKTANAVLSFALGKPFIPVDTHVLRIAKRLGLVDKKSTPEEVEKLLEKLLPEEDWRELNLLLIDFGRT 149
|
|
| ENDO3c |
cd00056 |
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ... |
36-190 |
2.87e-49 |
|
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Pssm-ID: 238013 [Multi-domain] Cd Length: 158 Bit Score: 157.79 E-value: 2.87e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 36 FHLLCAVLMSAQTTDKMVNRVMPKFMQDY-PTPKDLAQASIIEIEQHISQIGlYHSKAKHLKAMAKILVHKYHSEIPPDK 114
Cdd:cd00056 1 FEVLVSEILSQQTTDKAVNKAYERLFERYgPTPEALAAADEEELRELIRSLG-YRRKAKYLKELARAIVEGFGGLVLDDP 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1501234483 115 ---KILVTLPGVGEKTANVVLADGYGVPAIAVDTHVARIAKRFHIVDQNAKPLQIEKRLEQILPKNEWIHTHHAMILFG 190
Cdd:cd00056 80 darEELLALPGVGRKTANVVLLFALGPDAFPVDTHVRRVLKRLGLIPKKKTPEELEELLEELLPKPYWGEANQALMDLG 158
|
|
| HhH-GPD |
pfam00730 |
HhH-GPD superfamily base excision DNA repair protein; This family contains a diverse range of ... |
40-176 |
3.37e-42 |
|
HhH-GPD superfamily base excision DNA repair protein; This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family.
Pssm-ID: 425841 [Multi-domain] Cd Length: 141 Bit Score: 139.34 E-value: 3.37e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 40 CAVLMSAQTTDKMVNRVMPKFMQ-DYPTPKDLAQASIIEIEQHISQIGLYHSKAKHLKAMAKILVHKYHSEIPPDKKILV 118
Cdd:pfam00730 1 VSAILSQQTSDKAVNKITERLFEkFFPTPEDLADADEEELRELIRGLGFYRRKAKYLKELARILVEGYGGEVPLDEEELE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1501234483 119 T-LPGVGEKTANVVL--ADGYGVPAIAVDTHVARIAKRFHIVDQNAKPLQIEKRLEQILPK 176
Cdd:pfam00730 81 AlLKGVGRWTAEAVLifALGRPDPLPVVDTHVRRVLKRLGLIKEKPTPKEVERELEELWPP 141
|
|
| PRK10702 |
PRK10702 |
endonuclease III; Provisional |
10-197 |
1.33e-41 |
|
endonuclease III; Provisional
Pssm-ID: 182661 [Multi-domain] Cd Length: 211 Bit Score: 140.15 E-value: 1.33e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 10 KQAR-QVLQTINEMYPDAKSELIWDNKFHLLCAVLMSAQTTDKMVNRVMPKFMQDYPTPKDLAQASIIEIEQHISQIGLY 88
Cdd:PRK10702 3 KAKRlEILTRLRDNNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 89 HSKAKHLKAMAKILVHKYHSEIPPDKKILVTLPGVGEKTANVVLADGYGVPAIAVDTHVARIAKRFHIV-DQNAKplQIE 167
Cdd:PRK10702 83 NSKAENVIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFApGKNVE--QVE 160
|
170 180 190
....*....|....*....|....*....|
gi 1501234483 168 KRLEQILPKNEWIHTHHAMILFGRYSMTAR 197
Cdd:PRK10702 161 EKLLKVVPAEFKVDCHHWLILHGRYTCIAR 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Nth |
COG0177 |
Endonuclease III [Replication, recombination and repair]; |
16-197 |
8.63e-88 |
|
Endonuclease III [Replication, recombination and repair];
Pssm-ID: 439947 [Multi-domain] Cd Length: 198 Bit Score: 256.95 E-value: 8.63e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 16 LQTINEMYPDAKSELIWDNKFHLLCAVLMSAQTTDKMVNRVMPKFMQDYPTPKDLAQASIIEIEQHISQIGLYHSKAKHL 95
Cdd:COG0177 1 LERLKELYPDAKTELDYRDPFELLVATILSAQTTDERVNKATPRLFARYPTPEALAAADLEELEELIRPIGLYRNKAKNI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 96 KAMAKILVHKYHSEIPPDKKILVTLPGVGEKTANVVLADGYGVPAIAVDTHVARIAKRFHIVDQNaKPLQIEKRLEQILP 175
Cdd:COG0177 81 IALARILVEKYGGEVPETREELESLPGVGRKTANVVLNFAFGKPAIAVDTHVHRVSNRLGLVPGK-DPEEVEKDLMKLIP 159
|
170 180
....*....|....*....|..
gi 1501234483 176 KNEWIHTHHAMILFGRYSMTAR 197
Cdd:COG0177 160 KEYWGDLHHLLILHGRYICKAR 181
|
|
| nth |
TIGR01083 |
endonuclease III; This equivalog model identifes nth members of the pfam00730 superfamily ... |
10-197 |
1.21e-75 |
|
endonuclease III; This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273434 [Multi-domain] Cd Length: 192 Bit Score: 226.11 E-value: 1.21e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 10 KQARQVLQTINEMYPDAKSELIWDNKFHLLCAVLMSAQTTDKMVNRVMPKFMQDYPTPKDLAQASIIEIEQHISQIGLYH 89
Cdd:TIGR01083 2 QKAQEILERLRKNYPHPTTELDFNNPFELLVATILSAQATDKRVNKATPKLFEVYPTPQALAQAGLEELEEYIKSIGLYR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 90 SKAKHLKAMAKILVHKYHSEIPPDKKILVTLPGVGEKTANVVLADGYGVPAIAVDTHVARIAKRFHIVDQNaKPLQIEKR 169
Cdd:TIGR01083 82 NKAKNIIELCRKLVERYGGEVPEDREELVKLPGVGRKTANVVLNVAFGIPAIAVDTHVFRVSNRLGLSKGK-DPIKVEED 160
|
170 180
....*....|....*....|....*...
gi 1501234483 170 LEQILPKNEWIHTHHAMILFGRYSMTAR 197
Cdd:TIGR01083 161 LMKLVPREFWVKLHHWLILHGRYTCKAR 188
|
|
| ENDO3c |
smart00478 |
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ... |
44-192 |
3.73e-58 |
|
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Pssm-ID: 214684 [Multi-domain] Cd Length: 149 Bit Score: 180.15 E-value: 3.73e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 44 MSAQTTDKMVNRVMPKFMQDYPTPKDLAQASIIEIEQHISQIGLYHSKAKHLKAMAKILVHKYHSEIPPDKKILVTLPGV 123
Cdd:smart00478 1 LSQQTTDERVNKATERLFEKFPTPEDLAAADEEELEELIRGLGFYRRKARYLIELARILVEEYGGEVPDDREELLKLPGV 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1501234483 124 GEKTANVVLADGYGVPAIAVDTHVARIAKRFHIVDQNAKPLQIEKRLEQILPKNEWIHTHHAMILFGRY 192
Cdd:smart00478 81 GRKTANAVLSFALGKPFIPVDTHVLRIAKRLGLVDKKSTPEEVEKLLEKLLPEEDWRELNLLLIDFGRT 149
|
|
| ENDO3c |
cd00056 |
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ... |
36-190 |
2.87e-49 |
|
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Pssm-ID: 238013 [Multi-domain] Cd Length: 158 Bit Score: 157.79 E-value: 2.87e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 36 FHLLCAVLMSAQTTDKMVNRVMPKFMQDY-PTPKDLAQASIIEIEQHISQIGlYHSKAKHLKAMAKILVHKYHSEIPPDK 114
Cdd:cd00056 1 FEVLVSEILSQQTTDKAVNKAYERLFERYgPTPEALAAADEEELRELIRSLG-YRRKAKYLKELARAIVEGFGGLVLDDP 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1501234483 115 ---KILVTLPGVGEKTANVVLADGYGVPAIAVDTHVARIAKRFHIVDQNAKPLQIEKRLEQILPKNEWIHTHHAMILFG 190
Cdd:cd00056 80 darEELLALPGVGRKTANVVLLFALGPDAFPVDTHVRRVLKRLGLIPKKKTPEELEELLEELLPKPYWGEANQALMDLG 158
|
|
| HhH-GPD |
pfam00730 |
HhH-GPD superfamily base excision DNA repair protein; This family contains a diverse range of ... |
40-176 |
3.37e-42 |
|
HhH-GPD superfamily base excision DNA repair protein; This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family.
Pssm-ID: 425841 [Multi-domain] Cd Length: 141 Bit Score: 139.34 E-value: 3.37e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 40 CAVLMSAQTTDKMVNRVMPKFMQ-DYPTPKDLAQASIIEIEQHISQIGLYHSKAKHLKAMAKILVHKYHSEIPPDKKILV 118
Cdd:pfam00730 1 VSAILSQQTSDKAVNKITERLFEkFFPTPEDLADADEEELRELIRGLGFYRRKAKYLKELARILVEGYGGEVPLDEEELE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1501234483 119 T-LPGVGEKTANVVL--ADGYGVPAIAVDTHVARIAKRFHIVDQNAKPLQIEKRLEQILPK 176
Cdd:pfam00730 81 AlLKGVGRWTAEAVLifALGRPDPLPVVDTHVRRVLKRLGLIKEKPTPKEVERELEELWPP 141
|
|
| PRK10702 |
PRK10702 |
endonuclease III; Provisional |
10-197 |
1.33e-41 |
|
endonuclease III; Provisional
Pssm-ID: 182661 [Multi-domain] Cd Length: 211 Bit Score: 140.15 E-value: 1.33e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 10 KQAR-QVLQTINEMYPDAKSELIWDNKFHLLCAVLMSAQTTDKMVNRVMPKFMQDYPTPKDLAQASIIEIEQHISQIGLY 88
Cdd:PRK10702 3 KAKRlEILTRLRDNNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 89 HSKAKHLKAMAKILVHKYHSEIPPDKKILVTLPGVGEKTANVVLADGYGVPAIAVDTHVARIAKRFHIV-DQNAKplQIE 167
Cdd:PRK10702 83 NSKAENVIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFApGKNVE--QVE 160
|
170 180 190
....*....|....*....|....*....|
gi 1501234483 168 KRLEQILPKNEWIHTHHAMILFGRYSMTAR 197
Cdd:PRK10702 161 EKLLKVVPAEFKVDCHHWLILHGRYTCIAR 190
|
|
| MutY |
COG1194 |
Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs [Replication, recombination and ... |
47-178 |
6.27e-18 |
|
Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs [Replication, recombination and repair];
Pssm-ID: 440807 [Multi-domain] Cd Length: 350 Bit Score: 80.57 E-value: 6.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 47 QTTdkmVNRVMP---KFMQDYPTPKDLAQASIIEIEQHISqiGL-YHSKAKHLKAMAKILVHKYHSEIPPDKKILVTLPG 122
Cdd:COG1194 41 QTQ---VATVIPyyeRFLERFPTVEALAAAPEDEVLKLWE--GLgYYSRARNLHKAAQQVVEEHGGVFPDTYEELLALPG 115
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1501234483 123 VGEKTANVVLADGYGVPAIAVDTHVARIAKRFH-----IVDQNAKPlQIEKRLEQILPKNE 178
Cdd:COG1194 116 IGPYTAAAIASIAFGEPAPIVDGNVKRVLSRLFaiegpIGSPAAKK-ELWALAEELLPPER 175
|
|
| PRK13910 |
PRK13910 |
DNA glycosylase MutY; Provisional |
44-190 |
1.36e-17 |
|
DNA glycosylase MutY; Provisional
Pssm-ID: 172427 [Multi-domain] Cd Length: 289 Bit Score: 78.91 E-value: 1.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 44 MSAQTT-DKMVNRVMPKFMQDYPTPKDLAQASIIEIEQHISQIGlYHSKAKHLKAMAKILVHKYHSEIPPDKKILVTLPG 122
Cdd:PRK13910 1 MSQQTQiNTVVERFYSPFLEAFPTLKDLANAPLEEVLLLWRGLG-YYSRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1501234483 123 VGEKTANVVLADGYGVPAIAVDTHVARIAKRFHIVDQNAKPLQIEKRLEQILPKNEWIHTHHAMILFG 190
Cdd:PRK13910 80 IGAYTANAILCFGFREKSACVDANIKRVLLRLFGLDPNIHAKDLQIKANDFLNLNESFNHNQALIDLG 147
|
|
| PRK10880 |
PRK10880 |
adenine DNA glycosylase; |
44-190 |
5.52e-11 |
|
adenine DNA glycosylase;
Pssm-ID: 182805 [Multi-domain] Cd Length: 350 Bit Score: 60.88 E-value: 5.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 44 MSAQTtdkMVNRVMP---KFMQDYPTPKDLAQASIIEIEQHISQIGlYHSKAKHLKAMAKILVHKYHSEIPPDKKILVTL 120
Cdd:PRK10880 39 MLQQT---QVATVIPyfeRFMARFPTVTDLANAPLDEVLHLWTGLG-YYARARNLHKAAQQVATLHGGEFPETFEEVAAL 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1501234483 121 PGVGEKTANVVLADGYGVPAIAVDTHVARIAKRFHIVDQNAKPLQIEKRL----EQILPKNEWIHTHHAMILFG 190
Cdd:PRK10880 115 PGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENRLwqlsEQVTPAVGVERFNQAMMDLG 188
|
|
| AlkA |
COG0122 |
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and ... |
36-172 |
5.23e-09 |
|
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair];
Pssm-ID: 439892 [Multi-domain] Cd Length: 255 Bit Score: 54.51 E-value: 5.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 36 FHLLCAVLMSAQTT----DKMVNRV----------MPKFMQDYPTPKDLAQASIIEIEQhisqIGLYHSKAKHLKAMAK- 100
Cdd:COG0122 85 FEALVRAILGQQVSvaaaRTIWRRLvalfgepiegPGGGLYAFPTPEALAAASEEELRA----CGLSRRKARYLRALARa 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 101 ILVHKYHSEIPPD------KKILVTLPGVGEKTANVVLADGYGVPAI--AVDTHVARIAKRFHIVDQNAKPLQIEKRLEQ 172
Cdd:COG0122 161 VADGELDLEALAGlddeeaIARLTALPGIGPWTAEMVLLFALGRPDAfpAGDLGLRRALGRLYGLGERPTPKELRELAEP 240
|
|
| ogg |
TIGR00588 |
8-oxoguanine DNA-glycosylase (ogg); All proteins in this family for which functions are known ... |
64-179 |
6.53e-09 |
|
8-oxoguanine DNA-glycosylase (ogg); All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 211589 [Multi-domain] Cd Length: 310 Bit Score: 54.53 E-value: 6.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1501234483 64 YPTPKDLAQAsiiEIEQHISQIGLYHsKAKHLKAMAKILVHK-----YHSEI---PPD--KKILVTLPGVGEKTANVVLA 133
Cdd:TIGR00588 163 FPSLHALTGP---EAEAHLRKLGLGY-RARYIRETARALLEEqggraWLQQIrgaSYEdaREALCELPGVGPKVADCICL 238
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1501234483 134 DGYGVP-AIAVDTHVARIAKRFH----IVDQNAKPLQIEKRLEQILPKNEW 179
Cdd:TIGR00588 239 MGLDKPqAVPVDVHVWRIANRDYpwhpKTSRAKGPSPFARKELGNFFRSLW 289
|
|
| HHH |
pfam00633 |
Helix-hairpin-helix motif; The helix-hairpin-helix DNA-binding motif is found to be duplicated ... |
105-133 |
4.03e-05 |
|
Helix-hairpin-helix motif; The helix-hairpin-helix DNA-binding motif is found to be duplicated in the central domain of RuvA. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain.
Pssm-ID: 425789 [Multi-domain] Cd Length: 30 Bit Score: 39.32 E-value: 4.03e-05
10 20
....*....|....*....|....*....
gi 1501234483 105 KYHSEIPPDKKILVTLPGVGEKTANVVLA 133
Cdd:pfam00633 1 SLEGLIPASVEELLALPGVGPKTAEAILS 29
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