NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1575802412|ref|WP_130084456|]
View 

MULTISPECIES: septum formation initiator family protein [unclassified Akkermansia]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FtsB super family cl42746
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
29-119 3.11e-05

Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG2919:

Pssm-ID: 442163 [Multi-domain]  Cd Length: 96  Bit Score: 39.86  E-value: 3.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575802412  29 RALRLFAIVLALCLTMLLSLVCFKPWKDLRSLEHERSFLQARLEKAREQMEQSKNEFIWISQDPHYFEMIARDKGNLALP 108
Cdd:COG2919     3 RLLRTLVLLLLLAYLQYHLWFGDGGLLAYRELRQEIAELEAENAKLKARNAELEAEVADLKDGPDYIEERAREELGMVKP 82

                          90
                  ....*....|.
gi 1575802412 109 GEHILRFAESN 119
Cdd:COG2919    83 GETFYRVPDPE 93
 
Name Accession Description Interval E-value
FtsB COG2919
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
29-119 3.11e-05

Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442163 [Multi-domain]  Cd Length: 96  Bit Score: 39.86  E-value: 3.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575802412  29 RALRLFAIVLALCLTMLLSLVCFKPWKDLRSLEHERSFLQARLEKAREQMEQSKNEFIWISQDPHYFEMIARDKGNLALP 108
Cdd:COG2919     3 RLLRTLVLLLLLAYLQYHLWFGDGGLLAYRELRQEIAELEAENAKLKARNAELEAEVADLKDGPDYIEERAREELGMVKP 82

                          90
                  ....*....|.
gi 1575802412 109 GEHILRFAESN 119
Cdd:COG2919    83 GETFYRVPDPE 93
DivIC pfam04977
Septum formation initiator; DivIC from B. subtilis is necessary for both vegetative and ...
 52-115 3.08e-03

Septum formation initiator; DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.


Pssm-ID: 428231 [Multi-domain]  Cd Length: 69  Bit Score: 33.73  E-value: 3.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1575802412  52 KPWKDLRSLEHERSFLQARLEKAREQMEQSKNEFIWISQDPHYFEMIARDKGNLALPGEHILRF 115
Cdd:pfam04977   3 NGLLTYYQLKQEIAQLQAEIAKLKQENEELEAEIKDLKSDPDYIEERARSELGMVKPGETVYRV 66
 
Name Accession Description Interval E-value
FtsB COG2919
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
29-119 3.11e-05

Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442163 [Multi-domain]  Cd Length: 96  Bit Score: 39.86  E-value: 3.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575802412  29 RALRLFAIVLALCLTMLLSLVCFKPWKDLRSLEHERSFLQARLEKAREQMEQSKNEFIWISQDPHYFEMIARDKGNLALP 108
Cdd:COG2919     3 RLLRTLVLLLLLAYLQYHLWFGDGGLLAYRELRQEIAELEAENAKLKARNAELEAEVADLKDGPDYIEERAREELGMVKP 82

                          90
                  ....*....|.
gi 1575802412 109 GEHILRFAESN 119
Cdd:COG2919    83 GETFYRVPDPE 93
DivIC pfam04977
Septum formation initiator; DivIC from B. subtilis is necessary for both vegetative and ...
 52-115 3.08e-03

Septum formation initiator; DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.


Pssm-ID: 428231 [Multi-domain]  Cd Length: 69  Bit Score: 33.73  E-value: 3.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1575802412  52 KPWKDLRSLEHERSFLQARLEKAREQMEQSKNEFIWISQDPHYFEMIARDKGNLALPGEHILRF 115
Cdd:pfam04977   3 NGLLTYYQLKQEIAQLQAEIAKLKQENEELEAEIKDLKSDPDYIEERARSELGMVKPGETVYRV 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH