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Conserved domains on  [gi|2478596648|ref|WP_277938036|]
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hypothetical protein [Spiroplasma citri]

Protein Classification

PHA00540 and Spiralin domain-containing protein( domain architecture ID 10525181)

PHA00540 and Spiralin domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spiralin pfam05215
Spiralin domain; This entry represents a repeated domain found in Spiralin proteins found in ...
 707-798 2.83e-04

Spiralin domain; This entry represents a repeated domain found in Spiralin proteins found in spiroplasma bacteria. Spiroplasmas are helically shaped pathogenic bacteria related to the mycoplasmas. The surface of spiroplasma bacteria is crowded with the membrane-anchored lipoprotein spiralin whose structure and function are unknown although its cellular function is thought to be a structural and mechanical one rather than a catalytic one.


:

Pssm-ID: 461591  Cd Length: 81  Bit Score: 40.47  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2478596648 707 DISGNFPAIKMNEIDTNKIRTLVLSYAQNYINQKVSGAVLGNDYTVvtkegvdinsnpdtlqSLLDNATSPKYLDIKIKA 786
Cdd:pfam05215   4 DLSDIDIKIKPIGVTKDNTKEAAKTAILAKIKKKLPGAVEGTDYTI----------------TGLNAATKAGKGSITVKA 67

                          90
                  ....*....|..
gi 2478596648 787 KPLSSLLIGEAK 798
Cdd:pfam05215  68 KSTSKLLKGSFT 79
 
Name Accession Description Interval E-value
Spiralin pfam05215
Spiralin domain; This entry represents a repeated domain found in Spiralin proteins found in ...
 707-798 2.83e-04

Spiralin domain; This entry represents a repeated domain found in Spiralin proteins found in spiroplasma bacteria. Spiroplasmas are helically shaped pathogenic bacteria related to the mycoplasmas. The surface of spiroplasma bacteria is crowded with the membrane-anchored lipoprotein spiralin whose structure and function are unknown although its cellular function is thought to be a structural and mechanical one rather than a catalytic one.


Pssm-ID: 461591  Cd Length: 81  Bit Score: 40.47  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2478596648 707 DISGNFPAIKMNEIDTNKIRTLVLSYAQNYINQKVSGAVLGNDYTVvtkegvdinsnpdtlqSLLDNATSPKYLDIKIKA 786
Cdd:pfam05215   4 DLSDIDIKIKPIGVTKDNTKEAAKTAILAKIKKKLPGAVEGTDYTI----------------TGLNAATKAGKGSITVKA 67

                          90
                  ....*....|..
gi 2478596648 787 KPLSSLLIGEAK 798
Cdd:pfam05215  68 KSTSKLLKGSFT 79
 
Name Accession Description Interval E-value
Spiralin pfam05215
Spiralin domain; This entry represents a repeated domain found in Spiralin proteins found in ...
 707-798 2.83e-04

Spiralin domain; This entry represents a repeated domain found in Spiralin proteins found in spiroplasma bacteria. Spiroplasmas are helically shaped pathogenic bacteria related to the mycoplasmas. The surface of spiroplasma bacteria is crowded with the membrane-anchored lipoprotein spiralin whose structure and function are unknown although its cellular function is thought to be a structural and mechanical one rather than a catalytic one.


Pssm-ID: 461591  Cd Length: 81  Bit Score: 40.47  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2478596648 707 DISGNFPAIKMNEIDTNKIRTLVLSYAQNYINQKVSGAVLGNDYTVvtkegvdinsnpdtlqSLLDNATSPKYLDIKIKA 786
Cdd:pfam05215   4 DLSDIDIKIKPIGVTKDNTKEAAKTAILAKIKKKLPGAVEGTDYTI----------------TGLNAATKAGKGSITVKA 67

                          90
                  ....*....|..
gi 2478596648 787 KPLSSLLIGEAK 798
Cdd:pfam05215  68 KSTSKLLKGSFT 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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