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Conserved domains on  [gi|145485323|ref|XP_001428670|]
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uncharacterized protein GSPATT00031503001 [Paramecium tetraurelia]

Protein Classification

60S ribosomal protein L37( domain architecture ID 10015186)

60S ribosomal protein L37 binds to the 23S rRNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-92 1.42e-37

60S ribosomal protein L37; Provisional


:

Pssm-ID: 240257  Cd Length: 91  Bit Score: 121.04  E-value: 1.42e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145485323  1 MARGTPAIGKRHQKTHTFCKRCGRQTFHIQKNRCASCGYPAARLRLYSgWGEKVARRRSTGTGRMRYLKSIARRAKNGFR 80
Cdd:PTZ00073  1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYN-WSVKAKRRRTTGTGRCRYLKTVARRAKNGFR 79

                        90
                ....*....|..
gi 145485323 81 AGTQAQPKVKNT 92
Cdd:PTZ00073 80 EGTKAKPKVKAA 91
 
Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-92 1.42e-37

60S ribosomal protein L37; Provisional


Pssm-ID: 240257  Cd Length: 91  Bit Score: 121.04  E-value: 1.42e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145485323  1 MARGTPAIGKRHQKTHTFCKRCGRQTFHIQKNRCASCGYPAARLRLYSgWGEKVARRRSTGTGRMRYLKSIARRAKNGFR 80
Cdd:PTZ00073  1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYN-WSVKAKRRRTTGTGRCRYLKTVARRAKNGFR 79

                        90
                ....*....|..
gi 145485323 81 AGTQAQPKVKNT 92
Cdd:PTZ00073 80 EGTKAKPKVKAA 91
Ribosomal_L37e pfam01907
Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and ...
 3-53 7.56e-18

Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc.


Pssm-ID: 460380  Cd Length: 53  Bit Score: 70.30  E-value: 7.56e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 145485323   3 RGTPAIGKRHQKTHTFCKRCGRQTFHIQKNRCASCGYPAARLRLYSgWGEK 53
Cdd:pfam01907  2 KGTPSFGKRHNKTHTLCRRCGRRSYHVQKKTCASCGYPSARKRKYN-WSAK 51
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-48 1.62e-10

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441729  Cd Length: 52  Bit Score: 51.49  E-value: 1.62e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 145485323  1 MARGTPAIGKRHQ-KTHTFCKRCGRQTFHIQKNRCASCGY-PAARLRLYS 48
Cdd:COG2126   1 MSKGTPSMGKRNKgKTHIRCRRCGRNSYNVRKKYCASCGFgKSKRIRSYS 50
 
Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-92 1.42e-37

60S ribosomal protein L37; Provisional


Pssm-ID: 240257  Cd Length: 91  Bit Score: 121.04  E-value: 1.42e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145485323  1 MARGTPAIGKRHQKTHTFCKRCGRQTFHIQKNRCASCGYPAARLRLYSgWGEKVARRRSTGTGRMRYLKSIARRAKNGFR 80
Cdd:PTZ00073  1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYN-WSVKAKRRRTTGTGRCRYLKTVARRAKNGFR 79

                        90
                ....*....|..
gi 145485323 81 AGTQAQPKVKNT 92
Cdd:PTZ00073 80 EGTKAKPKVKAA 91
Ribosomal_L37e pfam01907
Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and ...
 3-53 7.56e-18

Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc.


Pssm-ID: 460380  Cd Length: 53  Bit Score: 70.30  E-value: 7.56e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 145485323   3 RGTPAIGKRHQKTHTFCKRCGRQTFHIQKNRCASCGYPAARLRLYSgWGEK 53
Cdd:pfam01907  2 KGTPSFGKRHNKTHTLCRRCGRRSYHVQKKTCASCGYPSARKRKYN-WSAK 51
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-48 1.62e-10

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441729  Cd Length: 52  Bit Score: 51.49  E-value: 1.62e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 145485323  1 MARGTPAIGKRHQ-KTHTFCKRCGRQTFHIQKNRCASCGY-PAARLRLYS 48
Cdd:COG2126   1 MSKGTPSMGKRNKgKTHIRCRRCGRNSYNVRKKYCASCGFgKSKRIRSYS 50
rpl37e PRK04179
50S ribosomal protein L37e; Reviewed
 1-58 6.50e-09

50S ribosomal protein L37e; Reviewed


Pssm-ID: 235242  Cd Length: 62  Bit Score: 47.70  E-value: 6.50e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 145485323  1 MARGTPAIGKRH-QKTHTFCKRCGRQTFHIQKNRCASCGY-PAARLRLYSGWGEKVARRR 58
Cdd:PRK04179  1 MSKGTPSMGKRNkGKTHIRCRRCGRHSYNVRKKYCAACGFgRSKRIRRYSWQNKKVNGKR 60
NPY1 COG2816
NADH pyrophosphatase NudC, Nudix superfamily [Nucleotide transport and metabolism];
13-40 6.08e-03

NADH pyrophosphatase NudC, Nudix superfamily [Nucleotide transport and metabolism];


Pssm-ID: 442065 [Multi-domain]  Cd Length: 288  Bit Score: 34.12  E-value: 6.08e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 145485323  13 QKTHTFCKRCGRQTFHIQ---KNRCASCG---YP 40
Cdd:COG2816  122 HRTHRFCGRCGAPTVVAAagwARRCPACGaehYP 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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