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Conserved domains on  [gi|149237148|ref|XP_001524451|]
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conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239]

Protein Classification

calreticulin family protein( domain architecture ID 10446997)

calreticulin family protein similar to calnexin which is a calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
35-453 0e+00

Calreticulin family;


:

Pssm-ID: 425564  Cd Length: 369  Bit Score: 520.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148   35 IFEQFEYPSLKnSPWKPSNSKKYDEGrDEIVEYKGKWSIETPHKYPGFSNDSGLVMKSRAAYHSIAYKLPHLITNnkidd 114
Cdd:pfam00262   1 FFEQFDDYDWE-SRWIPSKAKKDDSD-DEIAKYDGKWAVEEPTVYPGFEGDKGLVLKSKAKHHAISAKLDKPIDF----- 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  115 dddgagaggaggadgannidydkrdyakqDKRDLVIQYEVKVQsDKWSCGGAYIKLLDATSSsssssLNYIFFNSETPFQ 194
Cdd:pfam00262  74 -----------------------------KDKTLVVQYEVKLQ-NGLECGGAYIKLLSESND-----LDLEEFSDKTPYT 118
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  195 IKFGPDVCGSENQVHFVINKKLP-NGTIEAKTLKNPPMARINDMSNLYTLILKSTTlEFEIRINGKTVTSGNALAElnlF 273
Cdd:pfam00262 119 IMFGPDKCGSTNKVHFIFRHKNPkTGEYEEKHLKKPPKIRTDKLTHLYTLILRPDN-TFEIRIDGEVVKSGNLLED---F 194
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  274 SPPMVPPKTIVDVNDEKPLSWDDREYIPDPNVQPPEGYEEKhAHPTIPDPDAVKPVDWDESEPRYIPDPSAVRPLDVDhh 353
Cdd:pfam00262 195 KPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDED-APEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWD-- 271
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  354 agENGDDGWAPPLVVNPKCSTL-GCGKWTPPMIVNNDYLGPWFAPEIRNPNYQGKWKPRMIPNPDYHELQaSPLVLDNPI 432
Cdd:pfam00262 272 --EEEDGEWEAPLIPNPKCEEApGCGPWKPPMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDK-HPFSNLEPI 348
                         410       420
                  ....*....|....*....|.
gi 149237148  433 GGIGFELWTMDGDTLFDNIYI 453
Cdd:pfam00262 349 GAIGFELWSMSKDILFDNIYI 369
 
Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
35-453 0e+00

Calreticulin family;


Pssm-ID: 425564  Cd Length: 369  Bit Score: 520.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148   35 IFEQFEYPSLKnSPWKPSNSKKYDEGrDEIVEYKGKWSIETPHKYPGFSNDSGLVMKSRAAYHSIAYKLPHLITNnkidd 114
Cdd:pfam00262   1 FFEQFDDYDWE-SRWIPSKAKKDDSD-DEIAKYDGKWAVEEPTVYPGFEGDKGLVLKSKAKHHAISAKLDKPIDF----- 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  115 dddgagaggaggadgannidydkrdyakqDKRDLVIQYEVKVQsDKWSCGGAYIKLLDATSSsssssLNYIFFNSETPFQ 194
Cdd:pfam00262  74 -----------------------------KDKTLVVQYEVKLQ-NGLECGGAYIKLLSESND-----LDLEEFSDKTPYT 118
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  195 IKFGPDVCGSENQVHFVINKKLP-NGTIEAKTLKNPPMARINDMSNLYTLILKSTTlEFEIRINGKTVTSGNALAElnlF 273
Cdd:pfam00262 119 IMFGPDKCGSTNKVHFIFRHKNPkTGEYEEKHLKKPPKIRTDKLTHLYTLILRPDN-TFEIRIDGEVVKSGNLLED---F 194
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  274 SPPMVPPKTIVDVNDEKPLSWDDREYIPDPNVQPPEGYEEKhAHPTIPDPDAVKPVDWDESEPRYIPDPSAVRPLDVDhh 353
Cdd:pfam00262 195 KPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDED-APEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWD-- 271
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  354 agENGDDGWAPPLVVNPKCSTL-GCGKWTPPMIVNNDYLGPWFAPEIRNPNYQGKWKPRMIPNPDYHELQaSPLVLDNPI 432
Cdd:pfam00262 272 --EEEDGEWEAPLIPNPKCEEApGCGPWKPPMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDK-HPFSNLEPI 348
                         410       420
                  ....*....|....*....|.
gi 149237148  433 GGIGFELWTMDGDTLFDNIYI 453
Cdd:pfam00262 349 GAIGFELWSMSKDILFDNIYI 369
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
296-399 9.63e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 42.48  E-value: 9.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148 296 DREYIPDPnvqppegyeekhAHPTIPDPDAVKPVDWDESEPrYIPDPSAVRPLDVDHHAGENGDdgwapPLVVNPKCSTL 375
Cdd:PRK15313 561 DEPIIPDP------------VDPVIPDPVIPDPVDPDPVDP-VIPDPVIPDPVDPDPVDPEPVD-----PVIPDPTIPDI 622
                         90       100
                 ....*....|....*....|....
gi 149237148 376 GCGKwTPPMIVNNdylgpwFAPEI 399
Cdd:PRK15313 623 GQSD-TPPITEHQ------FRPEV 639
 
Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
35-453 0e+00

Calreticulin family;


Pssm-ID: 425564  Cd Length: 369  Bit Score: 520.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148   35 IFEQFEYPSLKnSPWKPSNSKKYDEGrDEIVEYKGKWSIETPHKYPGFSNDSGLVMKSRAAYHSIAYKLPHLITNnkidd 114
Cdd:pfam00262   1 FFEQFDDYDWE-SRWIPSKAKKDDSD-DEIAKYDGKWAVEEPTVYPGFEGDKGLVLKSKAKHHAISAKLDKPIDF----- 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  115 dddgagaggaggadgannidydkrdyakqDKRDLVIQYEVKVQsDKWSCGGAYIKLLDATSSsssssLNYIFFNSETPFQ 194
Cdd:pfam00262  74 -----------------------------KDKTLVVQYEVKLQ-NGLECGGAYIKLLSESND-----LDLEEFSDKTPYT 118
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  195 IKFGPDVCGSENQVHFVINKKLP-NGTIEAKTLKNPPMARINDMSNLYTLILKSTTlEFEIRINGKTVTSGNALAElnlF 273
Cdd:pfam00262 119 IMFGPDKCGSTNKVHFIFRHKNPkTGEYEEKHLKKPPKIRTDKLTHLYTLILRPDN-TFEIRIDGEVVKSGNLLED---F 194
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  274 SPPMVPPKTIVDVNDEKPLSWDDREYIPDPNVQPPEGYEEKhAHPTIPDPDAVKPVDWDESEPRYIPDPSAVRPLDVDhh 353
Cdd:pfam00262 195 KPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDED-APEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWD-- 271
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148  354 agENGDDGWAPPLVVNPKCSTL-GCGKWTPPMIVNNDYLGPWFAPEIRNPNYQGKWKPRMIPNPDYHELQaSPLVLDNPI 432
Cdd:pfam00262 272 --EEEDGEWEAPLIPNPKCEEApGCGPWKPPMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDK-HPFSNLEPI 348
                         410       420
                  ....*....|....*....|.
gi 149237148  433 GGIGFELWTMDGDTLFDNIYI 453
Cdd:pfam00262 349 GAIGFELWSMSKDILFDNIYI 369
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
296-399 9.63e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 42.48  E-value: 9.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149237148 296 DREYIPDPnvqppegyeekhAHPTIPDPDAVKPVDWDESEPrYIPDPSAVRPLDVDHHAGENGDdgwapPLVVNPKCSTL 375
Cdd:PRK15313 561 DEPIIPDP------------VDPVIPDPVIPDPVDPDPVDP-VIPDPVIPDPVDPDPVDPEPVD-----PVIPDPTIPDI 622
                         90       100
                 ....*....|....*....|....
gi 149237148 376 GCGKwTPPMIVNNdylgpwFAPEI 399
Cdd:PRK15313 623 GQSD-TPPITEHQ------FRPEV 639
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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