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Conserved domains on  [gi|154345321|ref|XP_001568602|]
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60S ribosomal protein L37 [Leishmania braziliensis MHOM/BR/75/M2904]

Protein Classification

60S ribosomal protein L37( domain architecture ID 10015186)

60S ribosomal protein L37 binds to the 23S rRNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-76 2.68e-28

60S ribosomal protein L37; Provisional


:

Pssm-ID: 240257  Cd Length: 91  Bit Score: 96.77  E-value: 2.68e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 154345321  1 MGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFKTPRA 76
Cdd:PTZ00073  8 FGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTGTGRCRYLKTVARRAKNGFREGTK 83
 
Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-76 2.68e-28

60S ribosomal protein L37; Provisional


Pssm-ID: 240257  Cd Length: 91  Bit Score: 96.77  E-value: 2.68e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 154345321  1 MGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFKTPRA 76
Cdd:PTZ00073  8 FGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTGTGRCRYLKTVARRAKNGFREGTK 83
Ribosomal_L37e pfam01907
Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and ...
 1-47 5.81e-19

Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc.


Pssm-ID: 460380  Cd Length: 53  Bit Score: 72.23  E-value: 5.81e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 154345321   1 MGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRASRRRYNWSVKAI 47
Cdd:pfam01907  7 FGKRHNKTHTLCRRCGRRSYHVQKKTCASCGYPSARKRKYNWSAKAK 53
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-43 4.16e-11

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441729  Cd Length: 52  Bit Score: 52.26  E-value: 4.16e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 154345321  1 MGQRH-GRTHILCRRCGRNAYHVQWERCAACAYPRASR-RRYNWS 43
Cdd:COG2126   8 MGKRNkGKTHIRCRRCGRNSYNVRKKYCASCGFGKSKRiRSYSWQ 52
 
Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-76 2.68e-28

60S ribosomal protein L37; Provisional


Pssm-ID: 240257  Cd Length: 91  Bit Score: 96.77  E-value: 2.68e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 154345321  1 MGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFKTPRA 76
Cdd:PTZ00073  8 FGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTGTGRCRYLKTVARRAKNGFREGTK 83
Ribosomal_L37e pfam01907
Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and ...
 1-47 5.81e-19

Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc.


Pssm-ID: 460380  Cd Length: 53  Bit Score: 72.23  E-value: 5.81e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 154345321   1 MGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRASRRRYNWSVKAI 47
Cdd:pfam01907  7 FGKRHNKTHTLCRRCGRRSYHVQKKTCASCGYPSARKRKYNWSAKAK 53
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-43 4.16e-11

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441729  Cd Length: 52  Bit Score: 52.26  E-value: 4.16e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 154345321  1 MGQRH-GRTHILCRRCGRNAYHVQWERCAACAYPRASR-RRYNWS 43
Cdd:COG2126   8 MGKRNkGKTHIRCRRCGRNSYNVRKKYCASCGFGKSKRiRSYSWQ 52
rpl37e PRK04179
50S ribosomal protein L37e; Reviewed
 1-48 7.11e-10

50S ribosomal protein L37e; Reviewed


Pssm-ID: 235242  Cd Length: 62  Bit Score: 49.24  E-value: 7.11e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 154345321  1 MGQRH-GRTHILCRRCGRNAYHVQWERCAACAYPRASR-RRYNWSVKAIK 48
Cdd:PRK04179  8 MGKRNkGKTHIRCRRCGRHSYNVRKKYCAACGFGRSKRiRRYSWQNKKVN 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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