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Conserved domains on  [gi|296412868|ref|XP_002836141|]
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uncharacterized protein GSTUM_00002331001 [Tuber melanosporum]

Protein Classification

PHA03247 and Uds1 domain-containing protein( domain architecture ID 10634442)

PHA03247 and Uds1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Uds1 pfam15456
Up-regulated During Septation; Uds1 is a domain family is found mostly in fungi, and is ...
 323-439 5.25e-38

Up-regulated During Septation; Uds1 is a domain family is found mostly in fungi, and is typically between 120 and 138 amino acids in length. The GO annotation for the S.pombe protein describes the protein as barrier septum assembly involved in cell cycle cytokinesis, GO:0071937. Many of the uncharacterized members are listed as being involucrin repeat proteins, but this can not be substantiated.


:

Pssm-ID: 434730 [Multi-domain]  Cd Length: 119  Bit Score: 134.98  E-value: 5.25e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296412868  323 LLKTAAKLRSEEFCVLNPKDVEGLSKELSQLETRCQYLRET---HKSLRNGRRTLHARMLTYLRTARSAVFSrESLLKQE 399
Cdd:pfam15456   1 LLVETALLDSQEFEILSFEEVEELKKELRALDSRLEYLRRKlalETKLRDAARSLHRLYSSYLRSPRNSKFS-ESLLKAE 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 296412868  400 EALAELDAAIDDWHNKLEKAEDRRAQVKEKLLEHIAAALS 439
Cdd:pfam15456  80 EELAESDRKIDELAQELEKLENRRAEVRRRLLEHTAAVLQ 119
 
Name Accession Description Interval E-value
Uds1 pfam15456
Up-regulated During Septation; Uds1 is a domain family is found mostly in fungi, and is ...
 323-439 5.25e-38

Up-regulated During Septation; Uds1 is a domain family is found mostly in fungi, and is typically between 120 and 138 amino acids in length. The GO annotation for the S.pombe protein describes the protein as barrier septum assembly involved in cell cycle cytokinesis, GO:0071937. Many of the uncharacterized members are listed as being involucrin repeat proteins, but this can not be substantiated.


Pssm-ID: 434730 [Multi-domain]  Cd Length: 119  Bit Score: 134.98  E-value: 5.25e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296412868  323 LLKTAAKLRSEEFCVLNPKDVEGLSKELSQLETRCQYLRET---HKSLRNGRRTLHARMLTYLRTARSAVFSrESLLKQE 399
Cdd:pfam15456   1 LLVETALLDSQEFEILSFEEVEELKKELRALDSRLEYLRRKlalETKLRDAARSLHRLYSSYLRSPRNSKFS-ESLLKAE 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 296412868  400 EALAELDAAIDDWHNKLEKAEDRRAQVKEKLLEHIAAALS 439
Cdd:pfam15456  80 EELAESDRKIDELAQELEKLENRRAEVRRRLLEHTAAVLQ 119
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 320-433 1.31e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 1.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296412868   320 QIELLKTAAKLRSEEFCVLNpKDVEGLSKELSQLETRCQYLRETHKSLRNGRRTLHARMltylRTARSAVFSRESLLKQ- 398
Cdd:TIGR02168  832 RIAATERRLEDLEEQIEELS-EDIESLAAEIEELEELIEELESELEALLNERASLEEAL----ALLRSELEELSEELREl 906

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 296412868   399 -------EEALAELDAAIDDWHNKLEKAEDRRAQVKEKLLEH 433
Cdd:TIGR02168  907 eskrselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 337-430 6.80e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 38.37  E-value: 6.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296412868 337 VLNPKDVEGLSKELSQLETRCQYLRETHKSLRNGRRTLHARmltyLRTARSAVFSRESLLkqEEALAELDAAIDDWHNKL 416
Cdd:COG1579   85 VRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEE----LAELEAELAELEAEL--EEKKAELDEELAELEAEL 158

                         90
                 ....*....|....
gi 296412868 417 EKAEDRRAQVKEKL 430
Cdd:COG1579  159 EELEAEREELAAKI 172
 
Name Accession Description Interval E-value
Uds1 pfam15456
Up-regulated During Septation; Uds1 is a domain family is found mostly in fungi, and is ...
 323-439 5.25e-38

Up-regulated During Septation; Uds1 is a domain family is found mostly in fungi, and is typically between 120 and 138 amino acids in length. The GO annotation for the S.pombe protein describes the protein as barrier septum assembly involved in cell cycle cytokinesis, GO:0071937. Many of the uncharacterized members are listed as being involucrin repeat proteins, but this can not be substantiated.


Pssm-ID: 434730 [Multi-domain]  Cd Length: 119  Bit Score: 134.98  E-value: 5.25e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296412868  323 LLKTAAKLRSEEFCVLNPKDVEGLSKELSQLETRCQYLRET---HKSLRNGRRTLHARMLTYLRTARSAVFSrESLLKQE 399
Cdd:pfam15456   1 LLVETALLDSQEFEILSFEEVEELKKELRALDSRLEYLRRKlalETKLRDAARSLHRLYSSYLRSPRNSKFS-ESLLKAE 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 296412868  400 EALAELDAAIDDWHNKLEKAEDRRAQVKEKLLEHIAAALS 439
Cdd:pfam15456  80 EELAESDRKIDELAQELEKLENRRAEVRRRLLEHTAAVLQ 119
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 320-433 1.31e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 1.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296412868   320 QIELLKTAAKLRSEEFCVLNpKDVEGLSKELSQLETRCQYLRETHKSLRNGRRTLHARMltylRTARSAVFSRESLLKQ- 398
Cdd:TIGR02168  832 RIAATERRLEDLEEQIEELS-EDIESLAAEIEELEELIEELESELEALLNERASLEEAL----ALLRSELEELSEELREl 906

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 296412868   399 -------EEALAELDAAIDDWHNKLEKAEDRRAQVKEKLLEH 433
Cdd:TIGR02168  907 eskrselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 337-430 6.80e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 38.37  E-value: 6.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296412868 337 VLNPKDVEGLSKELSQLETRCQYLRETHKSLRNGRRTLHARmltyLRTARSAVFSRESLLkqEEALAELDAAIDDWHNKL 416
Cdd:COG1579   85 VRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEE----LAELEAELAELEAEL--EEKKAELDEELAELEAEL 158

                         90
                 ....*....|....
gi 296412868 417 EKAEDRRAQVKEKL 430
Cdd:COG1579  159 EELEAEREELAAKI 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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