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Conserved domains on  [gi|573910082|ref|XP_006642759|]
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PREDICTED: serum amyloid A-5 protein-like [Lepisosteus oculatus]

Protein Classification

SAA domain-containing protein (domain architecture ID 10447209)

SAA domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SAA pfam00277
Serum amyloid A protein;
22-122 3.50e-59

Serum amyloid A protein;


:

Pssm-ID: 395215  Cd Length: 101  Bit Score: 177.10  E-value: 3.50e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573910082   22 MFPVEAARGAGDMWSAYDDMREANWKNSDKYFHARGNRDAASRGPGGKWAAEVISNAREWWQGSASGRGHEDTEADQEAN 101
Cdd:pfam00277   1 SFFKEAAQGAGDMWRAYWDMREANYKNSDKYFHARGNYDAAQRGPGGVWAAEVISDAREYLQGHVSGRGLEDSAADQEAN 80
                          90       100
                  ....*....|....*....|.
gi 573910082  102 RWGRDGGDLSKYRPKDLPEKY 122
Cdd:pfam00277  81 RWGRSGKDPNHFRPRGLPDKY 101
 
Name Accession Description Interval E-value
SAA pfam00277
Serum amyloid A protein;
22-122 3.50e-59

Serum amyloid A protein;


Pssm-ID: 395215  Cd Length: 101  Bit Score: 177.10  E-value: 3.50e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573910082   22 MFPVEAARGAGDMWSAYDDMREANWKNSDKYFHARGNRDAASRGPGGKWAAEVISNAREWWQGSASGRGHEDTEADQEAN 101
Cdd:pfam00277   1 SFFKEAAQGAGDMWRAYWDMREANYKNSDKYFHARGNYDAAQRGPGGVWAAEVISDAREYLQGHVSGRGLEDSAADQEAN 80
                          90       100
                  ....*....|....*....|.
gi 573910082  102 RWGRDGGDLSKYRPKDLPEKY 122
Cdd:pfam00277  81 RWGRSGKDPNHFRPRGLPDKY 101
SAA smart00197
Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. ...
20-122 7.05e-49

Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. Secondary amyloidosis is characterised by the extracellular accumulation in tissues of SAA proteins. SAA proteins are apolipoproteins.


Pssm-ID: 214552  Cd Length: 103  Bit Score: 151.13  E-value: 7.05e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573910082    20 WYMFPVEAARGAGDMWSAYDDMREANWKNSDKYFHARGNRDAASRGPGGKWAAEVISNAREWWQGSASGRGHEDTEADQE 99
Cdd:smart00197   1 WRSFFKEALQGAWDMWRAYRDMKEANHQNADKYFHARGNYDAAQRGPGGVWAAKVISDAREYFQGLISGRGLEDSKADQK 80
                           90       100
                   ....*....|....*....|...
gi 573910082   100 ANRWGRDGGDLSKYRPKDLPEKY 122
Cdd:smart00197  81 ANEWGRSGKDPNRFRPPGLPEKY 103
 
Name Accession Description Interval E-value
SAA pfam00277
Serum amyloid A protein;
22-122 3.50e-59

Serum amyloid A protein;


Pssm-ID: 395215  Cd Length: 101  Bit Score: 177.10  E-value: 3.50e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573910082   22 MFPVEAARGAGDMWSAYDDMREANWKNSDKYFHARGNRDAASRGPGGKWAAEVISNAREWWQGSASGRGHEDTEADQEAN 101
Cdd:pfam00277   1 SFFKEAAQGAGDMWRAYWDMREANYKNSDKYFHARGNYDAAQRGPGGVWAAEVISDAREYLQGHVSGRGLEDSAADQEAN 80
                          90       100
                  ....*....|....*....|.
gi 573910082  102 RWGRDGGDLSKYRPKDLPEKY 122
Cdd:pfam00277  81 RWGRSGKDPNHFRPRGLPDKY 101
SAA smart00197
Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. ...
20-122 7.05e-49

Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. Secondary amyloidosis is characterised by the extracellular accumulation in tissues of SAA proteins. SAA proteins are apolipoproteins.


Pssm-ID: 214552  Cd Length: 103  Bit Score: 151.13  E-value: 7.05e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573910082    20 WYMFPVEAARGAGDMWSAYDDMREANWKNSDKYFHARGNRDAASRGPGGKWAAEVISNAREWWQGSASGRGHEDTEADQE 99
Cdd:smart00197   1 WRSFFKEALQGAWDMWRAYRDMKEANHQNADKYFHARGNYDAAQRGPGGVWAAKVISDAREYFQGLISGRGLEDSKADQK 80
                           90       100
                   ....*....|....*....|...
gi 573910082   100 ANRWGRDGGDLSKYRPKDLPEKY 122
Cdd:smart00197  81 ANEWGRSGKDPNRFRPPGLPEKY 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.19
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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