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Conserved domains on  [gi|1039779470|ref|XP_017177906|]
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ubiquitin carboxyl-terminal hydrolase 29 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PH_USP37_like cd13312
Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here ...
11-116 3.59e-41

Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here include USP37, USP29, and USP26. All of these contain a single PH-like domain. USP37 (also called ubiquitin carboxyl-terminal hydrolase 37, ubiquitin thiolesterase 37, deubiquitinating enzyme 37, and tmp_locus_50) is a deubiquitinase that antagonizes the anaphase-promoting complex (APC/C) during G1/S transition by mediating deubiquitination of cyclin-A (CCNA1 and CCNA2), resulting in promoting S phase entry. USP37 mediates deubiquitination of 'Lys-11'-linked polyubiquitin chains, a specific ubiquitin-linkage type mediated by the APC/C complex and 'Lys-48'-linked polyubiquitin chains in vitro. Phosphorylation at Ser-628 during G1/S phase maximizes the deubiquitinase activity, leading to prevent degradation of cyclin-A (CCNA1 and CCNA2). USP29 (also called ubiquitin carboxyl-terminal hydrolase 29, ubiquitin thiolesterase 29, deubiquitinating enzyme 29, and HOM-TES-84/86) plays a role in apoptosis and oxidative stress. In response to oxidative stress, JTV1 dissociates from the ARS complex, translocates to the nucleus, associates with far upstream element binding protein (FBP) and co-activates the transcription of USP29 which binds to, cleaves poly-ubiquitin chains from, and stabilizes p53 leading to apoptosis. The X-linked deubiquitination enzyme USP26 (also called ubiquitin carboxyl-terminal hydrolase 26, ubiquitin thiolesterase 26, and deubiquitinating enzyme 26) is a regulator of androgen receptor (AR) signaling. It binds to AR using three nuclear receptor interaction motifs (LXXLL, FXXLF and FXXFF) and modulates AR ubiquitination. Polymorphism of Usp26 correlates with idiopathic male infertility. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


:

Pssm-ID: 270122  Cd Length: 103  Bit Score: 146.30  E-value: 3.59e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470  11 LKINGLVQIRSTNrskhTRASQWKEAVIEIVERKQKVNLVVSFKLEERRRVFQLGDNVTGVVVSGEL-GLYHLDLTLRDD 89
Cdd:cd13312     1 LKIHGFVQIWSKK----TGMTKWKEAFIEIVEGKKKVKLVVYFKTGGKPKTFQLSNNIKSVVLRSYGgNQNHLHLTLKNN 76
                          90       100
                  ....*....|....*....|....*..
gi 1039779470  90 TSLLIDKLSSADVEHLKSFLDSSTPCE 116
Cdd:cd13312    77 SFLFIDKLSSTDAEQLKEFLDKVHQKK 103
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
297-544 3.02e-39

Ubiquitin carboxyl-terminal hydrolase;


:

Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 147.97  E-value: 3.02e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFaKDLLTQGIPW-EKVSYDDLIMPLSQLLVL-----KDIRDVEIKGELLtsvKKSIS 370
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPF-RDYLLRISPLsEDSRYNKDINLLCALRDLfkalqKNSKSSSVSPKMF---KKSLG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 371 TVADTFSGNEQNDAHEFLSLCLDQLKLNMEKVNamwdterrntcagsagTKRFVCPVGANFEFELHSSIICEGCGEATIK 450
Cdd:pfam00443  78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNH----------------STENESLITDLFRGQLKSRLKCLSCGEVSET 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 451 TEVSNYLSIDLH-HGTKTHPLSIQKSFDLFFTPEKIEHN----CEKCKNKNSVLK-YTLRRLPRVLIVHLKRYQVTTDlL 524
Cdd:pfam00443 142 FEPFSDLSLPIPgDSAELKTASLQICFLQFSKLEELDDEekyyCDKCGCKQDAIKqLKISRLPPVLIIHLKRFSYNRS-T 220
                         250       260
                  ....*....|....*....|
gi 1039779470 525 PVKSEQPVEISKYLNISSHC 544
Cdd:pfam00443 221 WEKLNTEVEFPLELDLSRYL 240
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
770-830 1.02e-08

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02658:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 311  Bit Score: 57.72  E-value: 1.02e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039779470 770 NYRLVSVVSHFGSSPNSGHYVS----DVYDFQKqaWLLYSDVQVFESSDPSIQENRlnsGYIFFY 830
Cdd:cd02658   251 KYELIAFISHKGTSVHSGHYVAhikkEIDGEGK--WVLFNDEKVVASQDPPEMKKL---GYIYFY 310
COG5533 super family cl35014
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
539-830 4.99e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5533:

Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 49.03  E-value: 4.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 539 NISSHCHENRKLPFpLANTSPDVSQGMMPGIFNQSMLsKKVISESCDPM--------VLQVGSSVDAEIQSFQIMYEDED 610
Cdd:COG5533     4 NLGNTCFMNSVLQI-LALYLPKLDELLDDLSKELKVL-KNVIRKPEPDLnqeealklFTALWSSKEHKVGWIPPMGSQED 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 611 ASEeqqqrgLESGSM--LEPELVKTENRILRQKTSLATDSMMGDgysfLPMLCEPLSIQDPGLAEMGLQEVPENPEFKNY 688
Cdd:COG5533    82 AHE------LLGKLLdeLKLDLVNSFTIRIFKTTKDKKKTSTGD----WFDIIIELPDQTWVNNLKTLQEFIDNMEELVD 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 689 EKINIYGKSDGRTNTELSKLYQNHGSRIKGLfLPASLASVSSQEDPEKdlsrsPELQEDDPHSFAFGSDDSKDGEMGddl 768
Cdd:COG5533   152 DETGVKAKENEELEVQAKQEYEVSFVKLPKI-LTIQLKRFANLGGNQK-----IDTEVDEKFELPVKHDQILNIVKE--- 222
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039779470 769 QNYRLVSVVSHFGSSpNSGHYVSDVYdfQKQAWLLYSDVQVFESSDPSIQENRLNSGYIFFY 830
Cdd:COG5533   223 TYYDLVGFVLHQGSL-EGGHYIAYVK--KGGKWEKANDSDVTPVSEEEAINEKAKNAYLYFY 281
 
Name Accession Description Interval E-value
PH_USP37_like cd13312
Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here ...
11-116 3.59e-41

Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here include USP37, USP29, and USP26. All of these contain a single PH-like domain. USP37 (also called ubiquitin carboxyl-terminal hydrolase 37, ubiquitin thiolesterase 37, deubiquitinating enzyme 37, and tmp_locus_50) is a deubiquitinase that antagonizes the anaphase-promoting complex (APC/C) during G1/S transition by mediating deubiquitination of cyclin-A (CCNA1 and CCNA2), resulting in promoting S phase entry. USP37 mediates deubiquitination of 'Lys-11'-linked polyubiquitin chains, a specific ubiquitin-linkage type mediated by the APC/C complex and 'Lys-48'-linked polyubiquitin chains in vitro. Phosphorylation at Ser-628 during G1/S phase maximizes the deubiquitinase activity, leading to prevent degradation of cyclin-A (CCNA1 and CCNA2). USP29 (also called ubiquitin carboxyl-terminal hydrolase 29, ubiquitin thiolesterase 29, deubiquitinating enzyme 29, and HOM-TES-84/86) plays a role in apoptosis and oxidative stress. In response to oxidative stress, JTV1 dissociates from the ARS complex, translocates to the nucleus, associates with far upstream element binding protein (FBP) and co-activates the transcription of USP29 which binds to, cleaves poly-ubiquitin chains from, and stabilizes p53 leading to apoptosis. The X-linked deubiquitination enzyme USP26 (also called ubiquitin carboxyl-terminal hydrolase 26, ubiquitin thiolesterase 26, and deubiquitinating enzyme 26) is a regulator of androgen receptor (AR) signaling. It binds to AR using three nuclear receptor interaction motifs (LXXLL, FXXLF and FXXFF) and modulates AR ubiquitination. Polymorphism of Usp26 correlates with idiopathic male infertility. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270122  Cd Length: 103  Bit Score: 146.30  E-value: 3.59e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470  11 LKINGLVQIRSTNrskhTRASQWKEAVIEIVERKQKVNLVVSFKLEERRRVFQLGDNVTGVVVSGEL-GLYHLDLTLRDD 89
Cdd:cd13312     1 LKIHGFVQIWSKK----TGMTKWKEAFIEIVEGKKKVKLVVYFKTGGKPKTFQLSNNIKSVVLRSYGgNQNHLHLTLKNN 76
                          90       100
                  ....*....|....*....|....*..
gi 1039779470  90 TSLLIDKLSSADVEHLKSFLDSSTPCE 116
Cdd:cd13312    77 SFLFIDKLSSTDAEQLKEFLDKVHQKK 103
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
297-544 3.02e-39

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 147.97  E-value: 3.02e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFaKDLLTQGIPW-EKVSYDDLIMPLSQLLVL-----KDIRDVEIKGELLtsvKKSIS 370
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPF-RDYLLRISPLsEDSRYNKDINLLCALRDLfkalqKNSKSSSVSPKMF---KKSLG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 371 TVADTFSGNEQNDAHEFLSLCLDQLKLNMEKVNamwdterrntcagsagTKRFVCPVGANFEFELHSSIICEGCGEATIK 450
Cdd:pfam00443  78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNH----------------STENESLITDLFRGQLKSRLKCLSCGEVSET 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 451 TEVSNYLSIDLH-HGTKTHPLSIQKSFDLFFTPEKIEHN----CEKCKNKNSVLK-YTLRRLPRVLIVHLKRYQVTTDlL 524
Cdd:pfam00443 142 FEPFSDLSLPIPgDSAELKTASLQICFLQFSKLEELDDEekyyCDKCGCKQDAIKqLKISRLPPVLIIHLKRFSYNRS-T 220
                         250       260
                  ....*....|....*....|
gi 1039779470 525 PVKSEQPVEISKYLNISSHC 544
Cdd:pfam00443 221 WEKLNTEVEFPLELDLSRYL 240
UCH_N pfam16674
N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the ...
10-111 5.06e-36

N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the N-terminus of ubiquitin carboxyl-terminal hydrolase 37 or 26. The function is not known.


Pssm-ID: 465227  Cd Length: 102  Bit Score: 131.58  E-value: 5.06e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470  10 HLKINGLVQIRSTNrskhTRASQWKEAVIEIVERKQKVNLVVSFKLEErRRVFQLGDNVTGVVVSGELG-LYHLDLTLRD 88
Cdd:pfam16674   1 PLKVHGFVQIWSKK----TGMSKWKEAFIEIVEKKKKVKLVVYFNTGG-PKTFQLNNNIKSVVLRSYGEkQNRLHLTLKN 75
                          90       100
                  ....*....|....*....|...
gi 1039779470  89 DTSLLIDKLSSADVEHLKSFLDS 111
Cdd:pfam16674  76 NSFLFIDKLSSTDAEELKMFLDR 98
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
297-553 5.63e-29

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 116.43  E-value: 5.63e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFgiptfakdlltqgipwekvsyddlimplsqllvlkdirdveikgelltsvkksistvadtf 376
Cdd:cd02257     1 GLNNLGNTCYLNSVLQALF------------------------------------------------------------- 19
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 377 sgNEQNDAHEFLSLCLDQLKLNMEKVNAMWDTERRNTCagsagtkrfvcPVGANFEFELHSSIICEGCGEATIKTEVSNY 456
Cdd:cd02257    20 --SEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKS-----------LIHDLFGGKLESTIVCLECGHESVSTEPELF 86
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 457 LSIDLHhGTKTHPLSIQKSFDLFFTPEKIEHN----CEKCKNKNSVLKYTLRRLPRVLIVHLKRYQVTTDLLPVKSEQPV 532
Cdd:cd02257    87 LSLPLP-VKGLPQVSLEDCLEKFFKEEILEGDncykCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKV 165
                         250       260
                  ....*....|....*....|.
gi 1039779470 533 EISKYLNISSHCHENRKLPFP 553
Cdd:cd02257   166 SFPLELDLSPYLSEGEKDSDS 186
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
297-533 3.04e-10

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 62.13  E-value: 3.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQS-VFGIPtfakdlltqgipwekvSYDDLIMPLS-QLLVLKD-IRD------VEIKGELLTSVKK 367
Cdd:COG5533     1 GLPNLGNTCFMNSVLQIlALYLP----------------KLDELLDDLSkELKVLKNvIRKpepdlnQEEALKLFTALWS 64
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 368 SIST-VADTFSGNEQNDAHEFLSLCLDQLKLNMEKVNamwdtERRNTCAGSAGTKRFVCPVganfefelHSSIIcegcgE 446
Cdd:COG5533    65 SKEHkVGWIPPMGSQEDAHELLGKLLDELKLDLVNSF-----TIRIFKTTKDKKKTSTGDW--------FDIII-----E 126
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 447 ATIKTEVSNylsidlhhgTKThplsIQKSFDLF--FTPEKIEHNCEKCKNKNSVLK----YTLRRLPRVLIVHLKRYqvT 520
Cdd:COG5533   127 LPDQTWVNN---------LKT----LQEFIDNMeeLVDDETGVKAKENEELEVQAKqeyeVSFVKLPKILTIQLKRF--A 191
                         250
                  ....*....|...
gi 1039779470 521 TDLLPVKSEQPVE 533
Cdd:COG5533   192 NLGGNQKIDTEVD 204
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
770-830 1.02e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 57.72  E-value: 1.02e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039779470 770 NYRLVSVVSHFGSSPNSGHYVS----DVYDFQKqaWLLYSDVQVFESSDPSIQENRlnsGYIFFY 830
Cdd:cd02658   251 KYELIAFISHKGTSVHSGHYVAhikkEIDGEGK--WVLFNDEKVVASQDPPEMKKL---GYIYFY 310
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
539-830 4.99e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 49.03  E-value: 4.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 539 NISSHCHENRKLPFpLANTSPDVSQGMMPGIFNQSMLsKKVISESCDPM--------VLQVGSSVDAEIQSFQIMYEDED 610
Cdd:COG5533     4 NLGNTCFMNSVLQI-LALYLPKLDELLDDLSKELKVL-KNVIRKPEPDLnqeealklFTALWSSKEHKVGWIPPMGSQED 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 611 ASEeqqqrgLESGSM--LEPELVKTENRILRQKTSLATDSMMGDgysfLPMLCEPLSIQDPGLAEMGLQEVPENPEFKNY 688
Cdd:COG5533    82 AHE------LLGKLLdeLKLDLVNSFTIRIFKTTKDKKKTSTGD----WFDIIIELPDQTWVNNLKTLQEFIDNMEELVD 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 689 EKINIYGKSDGRTNTELSKLYQNHGSRIKGLfLPASLASVSSQEDPEKdlsrsPELQEDDPHSFAFGSDDSKDGEMGddl 768
Cdd:COG5533   152 DETGVKAKENEELEVQAKQEYEVSFVKLPKI-LTIQLKRFANLGGNQK-----IDTEVDEKFELPVKHDQILNIVKE--- 222
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039779470 769 QNYRLVSVVSHFGSSpNSGHYVSDVYdfQKQAWLLYSDVQVFESSDPSIQENRLNSGYIFFY 830
Cdd:COG5533   223 TYYDLVGFVLHQGSL-EGGHYIAYVK--KGGKWEKANDSDVTPVSEEEAINEKAKNAYLYFY 281
 
Name Accession Description Interval E-value
PH_USP37_like cd13312
Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here ...
11-116 3.59e-41

Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here include USP37, USP29, and USP26. All of these contain a single PH-like domain. USP37 (also called ubiquitin carboxyl-terminal hydrolase 37, ubiquitin thiolesterase 37, deubiquitinating enzyme 37, and tmp_locus_50) is a deubiquitinase that antagonizes the anaphase-promoting complex (APC/C) during G1/S transition by mediating deubiquitination of cyclin-A (CCNA1 and CCNA2), resulting in promoting S phase entry. USP37 mediates deubiquitination of 'Lys-11'-linked polyubiquitin chains, a specific ubiquitin-linkage type mediated by the APC/C complex and 'Lys-48'-linked polyubiquitin chains in vitro. Phosphorylation at Ser-628 during G1/S phase maximizes the deubiquitinase activity, leading to prevent degradation of cyclin-A (CCNA1 and CCNA2). USP29 (also called ubiquitin carboxyl-terminal hydrolase 29, ubiquitin thiolesterase 29, deubiquitinating enzyme 29, and HOM-TES-84/86) plays a role in apoptosis and oxidative stress. In response to oxidative stress, JTV1 dissociates from the ARS complex, translocates to the nucleus, associates with far upstream element binding protein (FBP) and co-activates the transcription of USP29 which binds to, cleaves poly-ubiquitin chains from, and stabilizes p53 leading to apoptosis. The X-linked deubiquitination enzyme USP26 (also called ubiquitin carboxyl-terminal hydrolase 26, ubiquitin thiolesterase 26, and deubiquitinating enzyme 26) is a regulator of androgen receptor (AR) signaling. It binds to AR using three nuclear receptor interaction motifs (LXXLL, FXXLF and FXXFF) and modulates AR ubiquitination. Polymorphism of Usp26 correlates with idiopathic male infertility. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270122  Cd Length: 103  Bit Score: 146.30  E-value: 3.59e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470  11 LKINGLVQIRSTNrskhTRASQWKEAVIEIVERKQKVNLVVSFKLEERRRVFQLGDNVTGVVVSGEL-GLYHLDLTLRDD 89
Cdd:cd13312     1 LKIHGFVQIWSKK----TGMTKWKEAFIEIVEGKKKVKLVVYFKTGGKPKTFQLSNNIKSVVLRSYGgNQNHLHLTLKNN 76
                          90       100
                  ....*....|....*....|....*..
gi 1039779470  90 TSLLIDKLSSADVEHLKSFLDSSTPCE 116
Cdd:cd13312    77 SFLFIDKLSSTDAEQLKEFLDKVHQKK 103
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
297-544 3.02e-39

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 147.97  E-value: 3.02e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFaKDLLTQGIPW-EKVSYDDLIMPLSQLLVL-----KDIRDVEIKGELLtsvKKSIS 370
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPF-RDYLLRISPLsEDSRYNKDINLLCALRDLfkalqKNSKSSSVSPKMF---KKSLG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 371 TVADTFSGNEQNDAHEFLSLCLDQLKLNMEKVNamwdterrntcagsagTKRFVCPVGANFEFELHSSIICEGCGEATIK 450
Cdd:pfam00443  78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNH----------------STENESLITDLFRGQLKSRLKCLSCGEVSET 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 451 TEVSNYLSIDLH-HGTKTHPLSIQKSFDLFFTPEKIEHN----CEKCKNKNSVLK-YTLRRLPRVLIVHLKRYQVTTDlL 524
Cdd:pfam00443 142 FEPFSDLSLPIPgDSAELKTASLQICFLQFSKLEELDDEekyyCDKCGCKQDAIKqLKISRLPPVLIIHLKRFSYNRS-T 220
                         250       260
                  ....*....|....*....|
gi 1039779470 525 PVKSEQPVEISKYLNISSHC 544
Cdd:pfam00443 221 WEKLNTEVEFPLELDLSRYL 240
UCH_N pfam16674
N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the ...
10-111 5.06e-36

N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the N-terminus of ubiquitin carboxyl-terminal hydrolase 37 or 26. The function is not known.


Pssm-ID: 465227  Cd Length: 102  Bit Score: 131.58  E-value: 5.06e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470  10 HLKINGLVQIRSTNrskhTRASQWKEAVIEIVERKQKVNLVVSFKLEErRRVFQLGDNVTGVVVSGELG-LYHLDLTLRD 88
Cdd:pfam16674   1 PLKVHGFVQIWSKK----TGMSKWKEAFIEIVEKKKKVKLVVYFNTGG-PKTFQLNNNIKSVVLRSYGEkQNRLHLTLKN 75
                          90       100
                  ....*....|....*....|...
gi 1039779470  89 DTSLLIDKLSSADVEHLKSFLDS 111
Cdd:pfam16674  76 NSFLFIDKLSSTDAEELKMFLDR 98
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
297-553 5.63e-29

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 116.43  E-value: 5.63e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFgiptfakdlltqgipwekvsyddlimplsqllvlkdirdveikgelltsvkksistvadtf 376
Cdd:cd02257     1 GLNNLGNTCYLNSVLQALF------------------------------------------------------------- 19
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 377 sgNEQNDAHEFLSLCLDQLKLNMEKVNAMWDTERRNTCagsagtkrfvcPVGANFEFELHSSIICEGCGEATIKTEVSNY 456
Cdd:cd02257    20 --SEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKS-----------LIHDLFGGKLESTIVCLECGHESVSTEPELF 86
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 457 LSIDLHhGTKTHPLSIQKSFDLFFTPEKIEHN----CEKCKNKNSVLKYTLRRLPRVLIVHLKRYQVTTDLLPVKSEQPV 532
Cdd:cd02257    87 LSLPLP-VKGLPQVSLEDCLEKFFKEEILEGDncykCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKV 165
                         250       260
                  ....*....|....*....|.
gi 1039779470 533 EISKYLNISSHCHENRKLPFP 553
Cdd:cd02257   166 SFPLELDLSPYLSEGEKDSDS 186
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-534 9.30e-25

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 105.87  E-value: 9.30e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTF------------------AKDLLTQgipWEKVSYDDLIMPLSQLLVLKDIRDVEIK 358
Cdd:cd02658     1 GLRNLGNSCYLNSVLQVLFSIPSFqwryddlenkfpsdvvdpANDLNCQ---LIKLADGLLSGRYSKPASLKSENDPYQV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 359 GELLTSVKKSISTVADTFSGNEQNDAHEFLSLCLDQLklnmekvnamwdtERRNTCAGSAGTKRfvcpvgaNFEFELHSS 438
Cdd:cd02658    78 GIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKL-------------DRESFKNLGLNPND-------LFKFMIEDR 137
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 439 IICEGCGEATIKTEVSNYLSIDL--------HHGTKTH-PLSIQKSFDLFFTPEKIEHNCEKCKNKNSVLKYT-LRRLPR 508
Cdd:cd02658   138 LECLSCKKVKYTSELSEILSLPVpkdeatekEEGELVYePVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTgFKTFPD 217
                         250       260
                  ....*....|....*....|....*.
gi 1039779470 509 VLIVHLKRYQVTTDLLPVKSEQPVEI 534
Cdd:cd02658   218 YLVINMKRFQLLENWVPKKLDVPIDV 243
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-544 6.69e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 91.67  E-value: 6.69e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFAKDLLTQGIpwekvSYDDLIMPLSQLLV--LKDI-RDVEIKGE--------LLTSV 365
Cdd:cd02660     2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRH-----SCTCLSCSPNSCLScaMDEIfQEFYYSGDrspygpinLLYLS 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 366 KKSISTVAdtfsGNEQNDAHEFLSLCLDQLKLNMEKvnamwdteRRNTCAGSAGTKrfvCPVGANFEFELHSSIICEGCG 445
Cdd:cd02660    77 WKHSRNLA----GYSQQDAHEFFQFLLDQLHTHYGG--------DKNEANDESHCN---CIIHQTFSGSLQSSVTCQRCG 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 446 EATIKTEVSNYLSIDLHHGTK----------THPLSIQKSFDLFFTPEKIE---HNCEKCKNKNSVLK-YTLRRLPRVLI 511
Cdd:cd02660   142 GVSTTVDPFLDLSLDIPNKSTpswalgesgvSGTPTLSDCLDRFTRPEKLGdfaYKCSGCGSTQEATKqLSIKKLPPVLC 221
                         250       260       270
                  ....*....|....*....|....*....|...
gi 1039779470 512 VHLKRYQVTTDLLPVKSEQPVEISKYLNISSHC 544
Cdd:cd02660   222 FQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYT 254
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-518 2.75e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 86.93  E-value: 2.75e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFAKDLLTQgIPWEKVSYDDLIMPLSQLLVLK---DIRDVEIKgELLTSVKKSISTVA 373
Cdd:cd02659     4 GLKNQGATCYMNSLLQQLYMTPEFRNAVYSI-PPTEDDDDNKSVPLALQRLFLFlqlSESPVKTT-ELTDKTRSFGWDSL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 374 DTFsgnEQNDAHEFLSLCLDQLKlnmekvNAMWDTERRNTcagsagTKRFvcpvganFEFELHSSIICEGCGEATIKTEV 453
Cdd:cd02659    82 NTF---EQHDVQEFFRVLFDKLE------EKLKGTGQEGL------IKNL-------FGGKLVNYIICKECPHESEREEY 139
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 454 SNYLSIDLHHGTkthplSIQKSFDLFFTPEKIE----HNCEKCKNKNSVLKYT-LRRLPRVLIVHLKRYQ 518
Cdd:cd02659   140 FLDLQVAVKGKK-----NLEESLDAYVQGETLEgdnkYFCEKCGKKVDAEKGVcFKKLPPVLTLQLKRFE 204
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
300-520 1.75e-17

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 82.34  E-value: 1.75e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 300 NLGNTCYMNSILQSVFgiptfakdlltqgipwekvsyddlimplsqllvlkdirdveikgelltsvkksistvadtfsgN 379
Cdd:cd02674     4 NLGNTCYMNSILQCLS---------------------------------------------------------------A 20
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 380 EQNDAHEFLSLCLDQLKlnmekvnamwdterrntcagSAgtkrfvcpVGANFEFELHSSIICEGCGEATIKTEVSNYLSI 459
Cdd:cd02674    21 DQQDAQEFLLFLLDGLH--------------------SI--------IVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSL 72
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039779470 460 DL-HHGTKTHPLSIQKSFDLFFTPEKIEHN----CEKCKNKNSVLKY-TLRRLPRVLIVHLKRYQVT 520
Cdd:cd02674    73 PIpSGSGDAPKVTLEDCLRLFTKEETLDGDnawkCPKCKKKRKATKKlTISRLPKVLIIHLKRFSFS 139
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-541 2.31e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 80.78  E-value: 2.31e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFAKDLLTQGIPWEKVSYDDLIMPLSQLLVlkdIRDVEIKGELLTSVKKS--ISTVAD 374
Cdd:cd02661     3 GLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHV---ERALASSGPGSAPRIFSsnLKQISK 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 375 TFSGNEQNDAHEFLSLCLDQlklnMEKVNAMwdtERRNTCAGSAGTKRfVCPVGANFEFELHSSIICEGCGEATIKTEVS 454
Cdd:cd02661    80 HFRIGRQEDAHEFLRYLLDA----MQKACLD---RFKKLKAVDPSSQE-TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPF 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 455 NYLSIDLHHGTkthplSIQKSFDLFFTPEKIE----HNCEKCKNKNSVLK-YTLRRLPRVLIVHLKRYQVTTDllpVKSE 529
Cdd:cd02661   152 LDLSLDIKGAD-----SLEDALEQFTKPEQLDgenkYKCERCKKKVKASKqLTIHRAPNVLTIHLKRFSNFRG---GKIN 223
                         250
                  ....*....|..
gi 1039779470 530 QPVEISKYLNIS 541
Cdd:cd02661   224 KQISFPETLDLS 235
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-551 1.38e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 78.20  E-value: 1.38e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSvfgiptfakdlltqgipwekvsyddlimpLSQLLVLKDIrdveIKG---ELLTSVKKSistvA 373
Cdd:cd02667     1 GLSNLGNTCFFNAVMQN-----------------------------LSQTPALREL----LSEtpkELFSQVCRK----A 43
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 374 DTFSGNEQNDAHEFLSLCLDQLKLNMEKVnamwdterrntcagsagtkrfvcpvganFEFELHSSIICEGCGeaTIKTEV 453
Cdd:cd02667    44 PQFKGYQQQDSHELLRYLLDGLRTFIDSI----------------------------FGGELTSTIMCESCG--TVSLVY 93
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 454 SNYLSIDLHHGTK-THPLSIQKSFDLFFTPEKIEHNCE-KCKN-KNSVLKYTLRRLPRVLIVHLKRYQVTTDLLPVKSEQ 530
Cdd:cd02667    94 EPFLDLSLPRSDEiKSECSIESCLKQFTEVEILEGNNKfACENcTKAKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSR 173
                         250       260
                  ....*....|....*....|.
gi 1039779470 531 PVEISKYLNISSHCHENRKLP 551
Cdd:cd02667   174 HVSFPEILDLAPFCDPKCNSS 194
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-518 2.80e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 65.59  E-value: 2.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFAKDLLTQGIPWEKvsyDDLIMPLSQLLVLkdirdveikGELLTSVKKSISTVADTF 376
Cdd:cd02664     1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLG---DSQSVMKKLQLLQ---------AHLMHTQRRAEAPPDYFL 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 377 SGN--------EQNDAHEFLSLCLDQLKLNMEKVnamwdterrntcagsagtkrfvcpvganFEFELHSSIICEGCGEAT 448
Cdd:cd02664    69 EASrppwftpgSQQDCSEYLRYLLDRLHTLIEKM----------------------------FGGKLSTTIRCLNCNSTS 120
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039779470 449 IKTEVSNYLSIdlhhgtkTHPlSIQKSFDLFFTPEKI----EHNCEKC-KNKNSVLKYTLRRLPRVLIVHLKRYQ 518
Cdd:cd02664   121 ARTERFRDLDL-------SFP-SVQDLLNYFLSPEKLtgdnQYYCEKCaSLQDAEKEMKVTGAPEYLILTLLRFS 187
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
297-533 3.04e-10

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 62.13  E-value: 3.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQS-VFGIPtfakdlltqgipwekvSYDDLIMPLS-QLLVLKD-IRD------VEIKGELLTSVKK 367
Cdd:COG5533     1 GLPNLGNTCFMNSVLQIlALYLP----------------KLDELLDDLSkELKVLKNvIRKpepdlnQEEALKLFTALWS 64
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 368 SIST-VADTFSGNEQNDAHEFLSLCLDQLKLNMEKVNamwdtERRNTCAGSAGTKRFVCPVganfefelHSSIIcegcgE 446
Cdd:COG5533    65 SKEHkVGWIPPMGSQEDAHELLGKLLDELKLDLVNSF-----TIRIFKTTKDKKKTSTGDW--------FDIII-----E 126
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 447 ATIKTEVSNylsidlhhgTKThplsIQKSFDLF--FTPEKIEHNCEKCKNKNSVLK----YTLRRLPRVLIVHLKRYqvT 520
Cdd:COG5533   127 LPDQTWVNN---------LKT----LQEFIDNMeeLVDDETGVKAKENEELEVQAKqeyeVSFVKLPKILTIQLKRF--A 191
                         250
                  ....*....|...
gi 1039779470 521 TDLLPVKSEQPVE 533
Cdd:COG5533   192 NLGGNQKIDTEVD 204
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-523 3.46e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 61.94  E-value: 3.46e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFA--KDLLTQGIpwEKVSYDDLIMPLSQLLVLKdiRDVEIkgelltsvkksistvad 374
Cdd:cd02663     1 GLENFGNTCYCNSVLQALYFENLLTclKDLFESIS--EQKKRTGVISPKKFITRLK--RENEL----------------- 59
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 375 tFSGNEQNDAHEFLSLCLDQLKLNMEKvnamwdtERRNTCAGSAGTKRFVCPVGAN-----FEFELHSSIICEGCGEATI 449
Cdd:cd02663    60 -FDNYMHQDAHEFLNFLLNEIAEILDA-------ERKAEKANRKLNNNNNAEPQPTwvheiFQGILTNETRCLTCETVSS 131
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039779470 450 KTEVSNYLSIDLHHGTkthplSIQKSFDLFFTPEKIEHN----CEKCKNKNSVLK-YTLRRLPRVLIVHLKRYQVTTDL 523
Cdd:cd02663   132 RDETFLDLSIDVEQNT-----SITSCLRQFSATETLCGRnkfyCDECCSLQEAEKrMKIKKLPKILALHLKRFKYDEQL 205
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
368-545 3.66e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 61.39  E-value: 3.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 368 SISTVADTFSGNEQNDAHEFLSLCLdqlklnmEKVNAMWDTERRNTCAGSAGTKRfVCPVGAnFEFELHSSIICEGCGEA 447
Cdd:cd02673    20 SIGKINTEFDNDDQQDAHEFLLTLL-------EAIDDIMQVNRTNVPPSNIEIKR-LNPLEA-FKYTIESSYVCIGCSFE 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 448 TIKTEVSNYLSIDLHHGTKThplSIQKSFDLFFTPEKIEHNCEKCKNKNSVLKYTLRRLPRVLIVHLKRY--QVTTDLLP 525
Cdd:cd02673    91 ENVSDVGNFLDVSMIDNKLD---IDELLISNFKTWSPIEKDCSSCKCESAISSERIMTFPECLSINLKRYklRIATSDYL 167
                         170       180
                  ....*....|....*....|....*
gi 1039779470 526 VKSEQPV-----EISKYLNISSHCH 545
Cdd:cd02673   168 KKNEEIMkkycgTDAKYSLVAVICH 192
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-528 1.66e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 59.30  E-value: 1.66e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFakdlltqgipwekVSYDDLIMplsqllvlkdirdveikgelltsvkksistvadtf 376
Cdd:cd02662     1 GLVNLGNTCFMNSVLQALASLPSL-------------IEYLEEFL----------------------------------- 32
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 377 sgnEQNDAHEFLSLCLDQLKLNMekvnamwdterrntcagsagtkRFvcPvganFEFELHSSIICEGCGEAT---IKTEV 453
Cdd:cd02662    33 ---EQQDAHELFQVLLETLEQLL----------------------KF--P----FDGLLASRIVCLQCGESSkvrYESFT 81
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039779470 454 SNYLSIDLHHGtkTHPLSIQKSFDLFFTPEKIE-HNCEKCKNKnsvlkytLRRLPRVLIVHLKRYQVTTDLLPVKS 528
Cdd:cd02662    82 MLSLPVPNQSS--GSGTTLEHCLDDFLSTEIIDdYKCDRCQTV-------IVRLPQILCIHLSRSVFDGRGTSTKN 148
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
266-483 3.10e-09

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 60.67  E-value: 3.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 266 DRDVSIFGLEIITHNG---VQSLPDPYLNQLKRE----GFPNLGNTCYMNSILQSVFGIPTFAKDLLTQGipWEK----- 333
Cdd:COG5560   229 FEDRSVLLLSKITRNPdwlVDSIVDDHNRSINKEagtcGLRNLGNTCYMNSALQCLMHTWELRDYFLSDE--YEEsinee 306
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 334 ----------VSYDDLImplsqllvlKDIRDVEIKGELLTSVKKSISTVADTFSGNEQNDAHEFLSLCLDQLKLNMEKVN 403
Cdd:COG5560   307 nplgmhgsvaSAYADLI---------KQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRII 377
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 404 AMWDTERRNTCAGSAG-------------TKRFVCPVGANFEFELHSSIICEGCGEATIKTEVSNYLSIDLhhgtkthPL 470
Cdd:COG5560   378 KKPYTSKPDLSPGDDVvvkkkakecwwehLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPL-------PV 450
                         250
                  ....*....|...
gi 1039779470 471 SIQKSFDLFFTPE 483
Cdd:COG5560   451 SMVWKHTIVVFPE 463
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-517 1.01e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 57.82  E-value: 1.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFAKDLL---TQGIPWEKVSYDDliMPLSQLLVLKDIRdvEIKGELLTSVKKSI--ST 371
Cdd:cd02668     1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYecnSTEDAELKNMPPD--KPHEPQTIIDQLQ--LIFAQLQFGNRSVVdpSG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 372 VADTFSGN--EQNDAHEFLSLCLDQLKLNMEKVNamwDTERRNTcagsagtkrfvcpVGANFEFELHSSIICEGCGEATI 449
Cdd:cd02668    77 FVKALGLDtgQQQDAQEFSKLFLSLLEAKLSKSK---NPDLKNI-------------VQDLFRGEYSYVTQCSKCGRESS 140
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039779470 450 KteVSNYLSIDLH-HGTKThplsIQKSFDLFFTPEKIE----HNCEKCKNKNSVLKYT-LRRLPRVLIVHLKRY 517
Cdd:cd02668   141 L--PSKFYELELQlKGHKT----LEECIDEFLKEEQLTgdnqYFCESCNSKTDATRRIrLTTLPPTLNFQLLRF 208
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
770-830 1.02e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 57.72  E-value: 1.02e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039779470 770 NYRLVSVVSHFGSSPNSGHYVS----DVYDFQKqaWLLYSDVQVFESSDPSIQENRlnsGYIFFY 830
Cdd:cd02658   251 KYELIAFISHKGTSVHSGHYVAhikkEIDGEGK--WVLFNDEKVVASQDPPEMKKL---GYIYFY 310
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-517 2.02e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 56.83  E-value: 2.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFA---KDLLTQGIPWEKVSyddlimplSQLLVLKDIRDVEIKGELLTSVKKSISTVA 373
Cdd:cd02671    26 GLNNLGNTCYLNSVLQVLYFCPGFKhglKHLVSLISSVEQLQ--------SSFLLNPEKYNDELANQAPRRLLNALREVN 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 374 DTFSGNEQNDAHEFLSLCLDQLklnmekvnamwdterrntcagsagtKRFVCpvgANFEFELHSSIICEGCGEAT----- 448
Cdd:cd02671    98 PMYEGYLQHDAQEVLQCILGNI-------------------------QELVE---KDFQGQLVLRTRCLECETFTerred 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 449 -------------IKTEVSNYLSIDLHHGTKThplsIQKSFDLFFTPEKI----EHNCEKCKNKNSVLKYTL-RRLPRVL 510
Cdd:cd02671   150 fqdisvpvqeselSKSEESSEISPDPKTEMKT----LKWAISQFASVERIvgedKYFCENCHHYTEAERSLLfDKLPEVI 225

                  ....*..
gi 1039779470 511 IVHLKRY 517
Cdd:cd02671   226 TIHLKCF 232
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
770-830 9.05e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 54.07  E-value: 9.05e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039779470 770 NYRLVSVVSHFGSSPNSGHYVSDVYD-FQKQAWLLYSDVQVFESSDPSIQENRLNSGYIFFY 830
Cdd:cd02673   183 KYSLVAVICHLGESPYDGHYIAYTKElYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFY 244
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-518 2.10e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 53.49  E-value: 2.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGIPTFaKDLLTQGIPWEKVSYDDLIMPLSQLLVLKDIRDVEIK----GELLTSVKKSISTV 372
Cdd:cd02657     1 GLTNLGNTCYLNSTLQCLRSVPEL-RDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEpvppIEFLQLLRMAFPQF 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 373 ADTFSGN--EQNDAHEFLSLCLDQLklnmekvnamwdterRNTCAGSAGTKRFVCpvgANFEFELHSSIICEGCGEATIK 450
Cdd:cd02657    80 AEKQNQGgyAQQDAEECWSQLLSVL---------------SQKLPGAGSKGSFID---QLFGIELETKMKCTESPDEEEV 141
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039779470 451 TEVSNYlSIDLHHGTKTHPLSIQKSFDLFFTPEKIEHNCEKCKNKNSVLKYTLRRLPRVLIVHLKRYQ 518
Cdd:cd02657   142 STESEY-KLQCHISITTEVNYLQDGLKKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFF 208
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
297-401 4.58e-07

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 53.72  E-value: 4.58e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470  297 GFPNLGNTCYMNSILQSVFGIPTFAKDLLtqGIPWEKVSYDDLImplsQLLVLKDIRDVEIKGELLTSVKKSISTVADTF 376
Cdd:COG5077    195 GLRNQGATCYMNSLLQSLFFIAKFRKDVY--GIPTDHPRGRDSV----ALALQRLFYNLQTGEEPVDTTELTRSFGWDSD 268
                           90       100
                   ....*....|....*....|....*
gi 1039779470  377 SGNEQNDAHEFLSLCLDQLKLNMEK 401
Cdd:COG5077    269 DSFMQHDIQEFNRVLQDNLEKSMRG 293
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
771-830 7.92e-07

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 51.13  E-value: 7.92e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 771 YRLVSVVSHFGSSpNSGHYVSDVYDFQKQAWLLYSDVQVfesSDPSIQENRLNSGYIFFY 830
Cdd:cd02674   174 YDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRV---TKVSESSVVSSSAYILFY 229
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
764-823 1.09e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 51.65  E-value: 1.09e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039779470 764 MGDDLQN--YRLVSVVSHFGSSPNSGHYVSDVYDFQKQAWLLYSDVQVFESSDPSIQENRLN 823
Cdd:cd02668   237 AESDEGSyvYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSE 298
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
539-830 4.99e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 49.03  E-value: 4.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 539 NISSHCHENRKLPFpLANTSPDVSQGMMPGIFNQSMLsKKVISESCDPM--------VLQVGSSVDAEIQSFQIMYEDED 610
Cdd:COG5533     4 NLGNTCFMNSVLQI-LALYLPKLDELLDDLSKELKVL-KNVIRKPEPDLnqeealklFTALWSSKEHKVGWIPPMGSQED 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 611 ASEeqqqrgLESGSM--LEPELVKTENRILRQKTSLATDSMMGDgysfLPMLCEPLSIQDPGLAEMGLQEVPENPEFKNY 688
Cdd:COG5533    82 AHE------LLGKLLdeLKLDLVNSFTIRIFKTTKDKKKTSTGD----WFDIIIELPDQTWVNNLKTLQEFIDNMEELVD 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 689 EKINIYGKSDGRTNTELSKLYQNHGSRIKGLfLPASLASVSSQEDPEKdlsrsPELQEDDPHSFAFGSDDSKDGEMGddl 768
Cdd:COG5533   152 DETGVKAKENEELEVQAKQEYEVSFVKLPKI-LTIQLKRFANLGGNQK-----IDTEVDEKFELPVKHDQILNIVKE--- 222
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039779470 769 QNYRLVSVVSHFGSSpNSGHYVSDVYdfQKQAWLLYSDVQVFESSDPSIQENRLNSGYIFFY 830
Cdd:COG5533   223 TYYDLVGFVLHQGSL-EGGHYIAYVK--KGGKWEKANDSDVTPVSEEEAINEKAKNAYLYFY 281
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
756-830 5.75e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 46.15  E-value: 5.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 756 SDDSKDGEmgddlQNYRLVSVVSHFGSSPNSGHYVSDVYdfQKQAWLLYSDVQVFESSDPSIQE-----NRLNSGYIFFY 830
Cdd:cd02663   227 TDDAENPD-----RLYELVAVVVHIGGGPNHGHYVSIVK--SHGGWLLFDDETVEKIDENAVEEffgdsPNQATAYVLFY 299
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
757-830 2.85e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 44.02  E-value: 2.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 757 DDSKDGEMGDDLQNYRLVSVVSHFGSSPNSGHYVS------------DVYDFQKQA--------WLLYSDVQVFESSDPS 816
Cdd:cd02664   229 ESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTyardqtdadstgQECPEPKDAeendesknWYLFNDSRVTFSSFES 308
                          90
                  ....*....|....*....
gi 1039779470 817 IQeNRLNSG-----YIFFY 830
Cdd:cd02664   309 VQ-NVTSRFpkdtpYILFY 326
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
771-831 3.48e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 43.42  E-value: 3.48e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039779470 771 YRLVSVVSHFGSSPNSGHYVSDVYDFQKQaWLLYSDVQVFESSdpsiQENRLNSG-YIFFYM 831
Cdd:cd02661   248 YKLYAVLVHSGFSPHSGHYYCYVKSSNGK-WYNMDDSKVSPVS----IETVLSQKaYILFYI 304
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
770-809 9.28e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 42.32  E-value: 9.28e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1039779470 770 NYRLVSVVSHFGSSPNSGHYVSDVYDFQKQAWLLYSDVQV 809
Cdd:cd02657   240 YYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKV 279
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
738-825 1.35e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 41.71  E-value: 1.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 738 LSRSPELQEDDPHSFAFGSDDSKDGEMG---DDLQN--YRLVSVVSHFGSSpNSGHYVSDVYDFQKQAWLLYSDVQVFES 812
Cdd:cd02666   243 LIREAIQSESSLVRQAQNELAELKHEIEkqfDDLKSygYRLHAVFIHRGEA-SSGHYWVYIKDFEENVWRKYNDETVTVV 321
                          90
                  ....*....|...
gi 1039779470 813 SDPSIQENRLNSG 825
Cdd:cd02666   322 PASEVFLFTLGNT 334
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
770-831 1.58e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 41.00  E-value: 1.58e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039779470 770 NYRLVSVVSHFGSSpNSGHYVSDVYDFQKQAWLLYSDVQVFESSDPSIQEN-----RLNSGYIFFYM 831
Cdd:cd02665   163 PYELHAVLVHEGQA-NAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDsfgggRNPSAYCLMYI 228
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
771-830 1.63e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 41.20  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 771 YRLVSVVSHFGsSPNSGHYV----SDVYDFQKQA----------------WLLYSDVQVFESsdpSIQENRLNSG-YIFF 829
Cdd:cd02662   163 YRLRAVVVHYG-SHSSGHYVcyrrKPLFSKDKEPgsfvrmregpsstshpWWRISDTTVKEV---SESEVLEQKSaYMLF 238

                  .
gi 1039779470 830 Y 830
Cdd:cd02662   239 Y 239
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
749-830 3.00e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 40.82  E-value: 3.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779470 749 PHSFAfGSDDSKDGEMGDDLQNYRLVSVVSHFGSSpNSGHYVSDVYDfQKQAWLLYSDVQVFESSDPSIQENRlnsGYIF 828
Cdd:cd02660   252 PYTSS-SIGDTQDSNSLDPDYTYDLFAVVVHKGTL-DTGHYTAYCRQ-GDGQWFKFDDAMITRVSEEEVLKSQ---AYLL 325

                  ..
gi 1039779470 829 FY 830
Cdd:cd02660   326 FY 327
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-317 7.54e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 39.40  E-value: 7.54e-03
                          10        20
                  ....*....|....*....|.
gi 1039779470 297 GFPNLGNTCYMNSILQSVFGI 317
Cdd:cd02666     3 GLDNIGNTCYLNSLLQYFFTI 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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