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Conserved domains on  [gi|1207168299|ref|XP_021326441|]
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transcriptional enhancer factor TEF-3-like [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YBD super family cl39255
YAP binding domain; TEA domain transcription factors contain an N-terminal TEA domain ...
 95-173 4.15e-16

YAP binding domain; TEA domain transcription factors contain an N-terminal TEA domain pfam01285 and a C-terminal YAP binding domain (YBD). This entry corresponds to the YBD that binds to the oncoproteins YAP and TAZ. The structure of the YBD shows that it has an Ig-like beta sandwich fold.


The actual alignment was detected with superfamily member pfam17725:

Pssm-ID: 435993  Cd Length: 202  Bit Score: 72.13  E-value: 4.15e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1207168299  95 RLRLLEFSAFLEQPqdpETVNKHLFVHIAQsnptYSDPYLEAVDIRQIYDKFPEKkggLKELFEKGPTNAFFLVKFWHN 173
Cdd:pfam17725   2 RLALDGFSAYVDYP---MTAGRHDFVEITG----FADPPLECIDLSQIADKFPRE---LRELFLAGPPDAFFLVKCWAN 70
 
Name Accession Description Interval E-value
YBD pfam17725
YAP binding domain; TEA domain transcription factors contain an N-terminal TEA domain ...
 95-173 4.15e-16

YAP binding domain; TEA domain transcription factors contain an N-terminal TEA domain pfam01285 and a C-terminal YAP binding domain (YBD). This entry corresponds to the YBD that binds to the oncoproteins YAP and TAZ. The structure of the YBD shows that it has an Ig-like beta sandwich fold.


Pssm-ID: 435993  Cd Length: 202  Bit Score: 72.13  E-value: 4.15e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1207168299  95 RLRLLEFSAFLEQPqdpETVNKHLFVHIAQsnptYSDPYLEAVDIRQIYDKFPEKkggLKELFEKGPTNAFFLVKFWHN 173
Cdd:pfam17725   2 RLALDGFSAYVDYP---MTAGRHDFVEITG----FADPPLECIDLSQIADKFPRE---LRELFLAGPPDAFFLVKCWAN 70
 
Name Accession Description Interval E-value
YBD pfam17725
YAP binding domain; TEA domain transcription factors contain an N-terminal TEA domain ...
 95-173 4.15e-16

YAP binding domain; TEA domain transcription factors contain an N-terminal TEA domain pfam01285 and a C-terminal YAP binding domain (YBD). This entry corresponds to the YBD that binds to the oncoproteins YAP and TAZ. The structure of the YBD shows that it has an Ig-like beta sandwich fold.


Pssm-ID: 435993  Cd Length: 202  Bit Score: 72.13  E-value: 4.15e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1207168299  95 RLRLLEFSAFLEQPqdpETVNKHLFVHIAQsnptYSDPYLEAVDIRQIYDKFPEKkggLKELFEKGPTNAFFLVKFWHN 173
Cdd:pfam17725   2 RLALDGFSAYVDYP---MTAGRHDFVEITG----FADPPLECIDLSQIADKFPRE---LRELFLAGPPDAFFLVKCWAN 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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