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Conserved domains on  [gi|2038096249|ref|XP_022213449|]
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uncharacterized protein LOC111068343 isoform X1 [Drosophila obscura]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TLDc smart00584
domain in TBC and LysM domain containing proteins;
1200-1362 4.26e-74

domain in TBC and LysM domain containing proteins;


:

Pssm-ID: 214733  Cd Length: 165  Bit Score: 243.38  E-value: 4.26e-74
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249  1200 TEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMARLESPVLIVIEDTDNNVFGALTSCSLHVSDHFYG 1279
Cdd:smart00584    1 SSILSEEILALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTLLIIKDTDGEVFGAYASQAWRVSDHFYG 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249  1280 TGESLLYKFNPSFKVFHWTGENM-YFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQHCSTYGNEPL-APQEDFVIKTLE 1357
Cdd:smart00584   81 TGESFLFQLNPKFVVYDWTGKNKyYYINGTPDSLPIGGGGGGFGLWIDEDLNHGSSSHCKTFGNPPLsTKQEDFLILDIE 160


                    ....*
gi 2038096249  1358 CWAFV 1362
Cdd:smart00584  161 VWGFG 165
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
247-370 4.80e-14

LysM repeat [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 71.28  E-value: 4.80e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249  247 VPDNFKNRSRRASQDVSSLSRSVDNLAIPVRRSKSRSVDHGLAAPFDLDSLRSKVEQRFESVDKLSRQKSSLPTIPTISY 326
Cdd:COG1388     33 VALLLLAALAPAGLSLAAALNGEALLLLLPAAAAAAKAALAAAPEAAAAAAARYTVKSGDTLSGIARRYGAAAAPSPVTY 112

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2038096249  327 TVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVPDK 370
Cdd:COG1388    113 TVKKGDTLWSIARRYGVSVEELKRWNGLSSDTIRPGQKLKIPAS 156
 
Name Accession Description Interval E-value
TLDc smart00584
domain in TBC and LysM domain containing proteins;
1200-1362 4.26e-74

domain in TBC and LysM domain containing proteins;


Pssm-ID: 214733  Cd Length: 165  Bit Score: 243.38  E-value: 4.26e-74
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249  1200 TEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMARLESPVLIVIEDTDNNVFGALTSCSLHVSDHFYG 1279
Cdd:smart00584    1 SSILSEEILALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTLLIIKDTDGEVFGAYASQAWRVSDHFYG 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249  1280 TGESLLYKFNPSFKVFHWTGENM-YFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQHCSTYGNEPL-APQEDFVIKTLE 1357
Cdd:smart00584   81 TGESFLFQLNPKFVVYDWTGKNKyYYINGTPDSLPIGGGGGGFGLWIDEDLNHGSSSHCKTFGNPPLsTKQEDFLILDIE 160


                    ....*
gi 2038096249  1358 CWAFV 1362
Cdd:smart00584  161 VWGFG 165
TLD pfam07534
TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It ...
 1226-1362 1.59e-44

TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices.


Pssm-ID: 429519  Cd Length: 139  Bit Score: 157.77  E-value: 1.59e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249 1226 LIFSTSQHGFALNSLYRKMARlESPVLIVIEDTDNNVFGALTSCSLHVSDH-FYGTGESLLYKFNPSFKVFHWTGENMYF 1304
Cdd:pfam07534    1 LLYSTSRDGSSYQTFLEKIDN-KGPTLLIIKDNDGYIFGAFASQPWKVSGKkFYGDGESFLFSLSPQFDPYKWTGKNNAY 79

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249 1305 IKGNMESLSIGAGDGRFGLWLDGDLNQGRSQHCSTYGNEPLAP--QEDFVIKTLECWAFV 1362
Cdd:pfam07534   80 FNCTSDGLGFGGGQPKFDLWIDSDLEFGYSRHCETFGNGQLSGsgQERFKIDDVEVWGLG 139
OXR1 COG5142
Oxidation resistance protein [DNA replication, recombination, and repair];
1178-1359 2.15e-31

Oxidation resistance protein [DNA replication, recombination, and repair];


Pssm-ID: 227471  Cd Length: 212  Bit Score: 122.69  E-value: 2.15e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249 1178 KTSLFATGSFDLDFPIPDLIG-----KTEILTEEHREKLCSHLPARAEGY-SWSLIFSTSQHGFALNSLYRKMARLESPV 1251
Cdd:COG5142      7 KDYLFDSSLPDLPELQFDLMHdgksyKASLLTEEIVTRIRESLPDRYKYStSWRLLYSLFENGFSLRTFYESFGENEWPF 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249 1252 -----LIVIEDTDNNVFGALTSCSLHVSDHFYGTGESLLYKFNP---------SFKVFHWTGENMYFIKGNMESLSIGAG 1317
Cdd:COG5142     87 rrvgfVLACRDKDGDLFGAFFEDRIRPARHYYGRDEMFLWKAARrpadrladkEVAVYPISGGKGFGIYCTPDFLAFGCG 166

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 2038096249 1318 DGRFGLWLDGDLNQGRSQHCSTYGNEPLAPQEDFV-IKTLECW 1359
Cdd:COG5142    167 GGRYGLLIDKSLLDGESHPVETFGNCLLSSKGHFFrIVYLELW 209
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
247-370 4.80e-14

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 71.28  E-value: 4.80e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249  247 VPDNFKNRSRRASQDVSSLSRSVDNLAIPVRRSKSRSVDHGLAAPFDLDSLRSKVEQRFESVDKLSRQKSSLPTIPTISY 326
Cdd:COG1388     33 VALLLLAALAPAGLSLAAALNGEALLLLLPAAAAAAKAALAAAPEAAAAAAARYTVKSGDTLSGIARRYGAAAAPSPVTY 112

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2038096249  327 TVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVPDK 370
Cdd:COG1388    113 TVKKGDTLWSIARRYGVSVEELKRWNGLSSDTIRPGQKLKIPAS 156
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 326-368 5.07e-12

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 61.64  E-value: 5.07e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 2038096249  326 YTVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVP 368
Cdd:pfam01476    1 YTVKKGDTLSSIAKRYGITVEQLAELNGLSSPNLYVGQKLKIP 43
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 324-367 1.47e-07

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 49.02  E-value: 1.47e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 2038096249  324 ISYTVGNRDTLTSVAARFDTTPSELTHLNRL-NSSFIYPGQQLLV 367
Cdd:cd00118      1 KTYTVKPGDTLWSIAKKYGVTVEELAAANPLiNPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
326-367 3.50e-07

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 47.83  E-value: 3.50e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 2038096249   326 YTVGNRDTLTSVAARFDTTPSELTHLNR-LNSSFIYPGQQLLV 367
Cdd:smart00257    2 YTVKKGDTLSSIARRYGISVSDLLELNNiLDPDNLQVGQKLKI 44
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
326-383 1.09e-04

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 46.61  E-value: 1.09e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2038096249  326 YTVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVPDKSAKDEDGASSSTN 383
Cdd:PRK06347   408 YTVVKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKVSAGSTSNTNTSKPSTN 465
 
Name Accession Description Interval E-value
TLDc smart00584
domain in TBC and LysM domain containing proteins;
1200-1362 4.26e-74

domain in TBC and LysM domain containing proteins;


Pssm-ID: 214733  Cd Length: 165  Bit Score: 243.38  E-value: 4.26e-74
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249  1200 TEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMARLESPVLIVIEDTDNNVFGALTSCSLHVSDHFYG 1279
Cdd:smart00584    1 SSILSEEILALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTLLIIKDTDGEVFGAYASQAWRVSDHFYG 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249  1280 TGESLLYKFNPSFKVFHWTGENM-YFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQHCSTYGNEPL-APQEDFVIKTLE 1357
Cdd:smart00584   81 TGESFLFQLNPKFVVYDWTGKNKyYYINGTPDSLPIGGGGGGFGLWIDEDLNHGSSSHCKTFGNPPLsTKQEDFLILDIE 160


                    ....*
gi 2038096249  1358 CWAFV 1362
Cdd:smart00584  161 VWGFG 165
TLD pfam07534
TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It ...
 1226-1362 1.59e-44

TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices.


Pssm-ID: 429519  Cd Length: 139  Bit Score: 157.77  E-value: 1.59e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249 1226 LIFSTSQHGFALNSLYRKMARlESPVLIVIEDTDNNVFGALTSCSLHVSDH-FYGTGESLLYKFNPSFKVFHWTGENMYF 1304
Cdd:pfam07534    1 LLYSTSRDGSSYQTFLEKIDN-KGPTLLIIKDNDGYIFGAFASQPWKVSGKkFYGDGESFLFSLSPQFDPYKWTGKNNAY 79

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249 1305 IKGNMESLSIGAGDGRFGLWLDGDLNQGRSQHCSTYGNEPLAP--QEDFVIKTLECWAFV 1362
Cdd:pfam07534   80 FNCTSDGLGFGGGQPKFDLWIDSDLEFGYSRHCETFGNGQLSGsgQERFKIDDVEVWGLG 139
OXR1 COG5142
Oxidation resistance protein [DNA replication, recombination, and repair];
1178-1359 2.15e-31

Oxidation resistance protein [DNA replication, recombination, and repair];


Pssm-ID: 227471  Cd Length: 212  Bit Score: 122.69  E-value: 2.15e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249 1178 KTSLFATGSFDLDFPIPDLIG-----KTEILTEEHREKLCSHLPARAEGY-SWSLIFSTSQHGFALNSLYRKMARLESPV 1251
Cdd:COG5142      7 KDYLFDSSLPDLPELQFDLMHdgksyKASLLTEEIVTRIRESLPDRYKYStSWRLLYSLFENGFSLRTFYESFGENEWPF 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249 1252 -----LIVIEDTDNNVFGALTSCSLHVSDHFYGTGESLLYKFNP---------SFKVFHWTGENMYFIKGNMESLSIGAG 1317
Cdd:COG5142     87 rrvgfVLACRDKDGDLFGAFFEDRIRPARHYYGRDEMFLWKAARrpadrladkEVAVYPISGGKGFGIYCTPDFLAFGCG 166

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 2038096249 1318 DGRFGLWLDGDLNQGRSQHCSTYGNEPLAPQEDFV-IKTLECW 1359
Cdd:COG5142    167 GGRYGLLIDKSLLDGESHPVETFGNCLLSSKGHFFrIVYLELW 209
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
247-370 4.80e-14

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 71.28  E-value: 4.80e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249  247 VPDNFKNRSRRASQDVSSLSRSVDNLAIPVRRSKSRSVDHGLAAPFDLDSLRSKVEQRFESVDKLSRQKSSLPTIPTISY 326
Cdd:COG1388     33 VALLLLAALAPAGLSLAAALNGEALLLLLPAAAAAAKAALAAAPEAAAAAAARYTVKSGDTLSGIARRYGAAAAPSPVTY 112

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2038096249  327 TVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVPDK 370
Cdd:COG1388    113 TVKKGDTLWSIARRYGVSVEELKRWNGLSSDTIRPGQKLKIPAS 156
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 326-368 5.07e-12

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 61.64  E-value: 5.07e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 2038096249  326 YTVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVP 368
Cdd:pfam01476    1 YTVKKGDTLSSIAKRYGITVEQLAELNGLSSPNLYVGQKLKIP 43
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 324-367 1.47e-07

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 49.02  E-value: 1.47e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 2038096249  324 ISYTVGNRDTLTSVAARFDTTPSELTHLNRL-NSSFIYPGQQLLV 367
Cdd:cd00118      1 KTYTVKPGDTLWSIAKKYGVTVEELAAANPLiNPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
326-367 3.50e-07

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 47.83  E-value: 3.50e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 2038096249   326 YTVGNRDTLTSVAARFDTTPSELTHLNR-LNSSFIYPGQQLLV 367
Cdd:smart00257    2 YTVKKGDTLSSIARRYGISVSDLLELNNiLDPDNLQVGQKLKI 44
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
326-383 1.09e-04

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 46.61  E-value: 1.09e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2038096249  326 YTVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVPDKSAKDEDGASSSTN 383
Cdd:PRK06347   408 YTVVKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKVSAGSTSNTNTSKPSTN 465
mltD PRK10783
membrane-bound lytic murein transglycosylase D; Provisional
 325-382 1.44e-04

membrane-bound lytic murein transglycosylase D; Provisional


Pssm-ID: 182727 [Multi-domain]  Cd Length: 456  Bit Score: 45.88  E-value: 1.44e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2038096249  325 SYTVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVPDKSAKDE--DGASSST 382
Cdd:PRK10783   345 SYKVRSGDTLSGIASRLNVSTKDLQQWNNLRGSKLKVGQTLTIGAGSSAQRlaNNSDSIT 404
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 316-371 7.15e-04

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 41.92  E-value: 7.15e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2038096249  316 SSLPTIPTISYTVGNRDTLTSVAARFDTTPS---ELTHLNRL---NSSFIYPGQQLLVPDKS 371
Cdd:COG1652    102 AELAPDAPKTYTVKPGDTLWGIAKRFYGDPArwpEIAEANRDqikNPDLIYPGQVLRIPALE 163
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
307-384 7.42e-04

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 43.92  E-value: 7.42e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2038096249  307 SVDKLSRQKSSLPTIPTISYTVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVPDKSAKDEDGAS-SSTNE 384
Cdd:PRK06347   463 STNTNTSKPSTNTNTNAKVYTVAKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKVSAGSTTNNTNTAkPSTNK 541
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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