|
Name |
Accession |
Description |
Interval |
E-value |
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
145-1662 |
0e+00 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 891.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 145 LPLKVKYRLRF--------HSIKNTPWftellfpvnpSRGPRNPSSTEGgspDYYKGGFLLVQHALDKAIIvyhngRAAE 216
Cdd:TIGR01257 563 LPPHVKYKIRMdidvvektNKIKDRYW----------DSGPRADPVEDF---RYIWGGFAYLQDMVEQGIT-----RSQM 624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 217 MLFANVNIFVSRFPYPTYYKDNFFLSFLSLFPLAVLLIFSLTELTLIRTIVMEKETRLKEYQFMIGLSNGMLWASYFV-T 295
Cdd:TIGR01257 625 QAEPPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLdS 704
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 296 FLLMFLIIVCILCVVLFVKIvpvvvLQNSDPSLIFVFFLCFVVATITFGFLITTFFDKTSLAVSIGGFLFFLTFFPFVVV 375
Cdd:TIGR01257 705 FSIMSMSIFLLTIFIMHGRI-----LHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILC 779
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 376 ITMYGMLSRTGKLASCLLSNIAVALGITTISKLEIKEYGAKWNNFLSRVSPDDELTLAHIMGMLLFDAFLYGLLAWYIDA 455
Cdd:TIGR01257 780 FAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQ 859
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 456 VFPGKYGVPKPWYFFMQKGYWLG-KATSIRKKEDM----PVTNTVQN---------AYFEEEPVGLIAGIRIQHLYKEFT 521
Cdd:TIGR01257 860 VFPGDYGTPLPWYFLLQESYWLGgEGCSTREERALektePLTEEMEDpehpegindSFFERELPGLVPGVCVKNLVKIFE 939
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 522 LQNMTvlAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLCPQDDILFHH 601
Cdd:TIGR01257 940 PSGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHH 1017
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 602 LTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR 681
Cdd:TIGR01257 1018 LTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR 1097
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 682 RFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGSTIFLKKVYGVGYHLIIVK------------DHHC 749
Cdd:TIGR01257 1098 RSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRkmkniqsqrggcEGTC 1177
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 750 --------------------------DVKEISELIKYHIPEARLENNVAAELSFVLP-KEYTDR-FKALFTEMEDRQEEL 801
Cdd:TIGR01257 1178 sctskgfstrcparvdeitpeqvldgDVNELMDLVYHHVPEAKLVECIGQELIFLLPnKNFKQRaYASLFRELEETLADL 1257
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 802 GIASFGISITTMEEVFIRVSQ---SNNQILQTLKNEDESEDTNQNMNVPRNFERSYASSNLN------------------ 860
Cdd:TIGR01257 1258 GLSSFGISDTPLEEIFLKVTEdadSGSLFAGGAQQKRENANLRHPCSGPTEKAGQTPQASHTcspgqpaahpegqpppep 1337
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 861 ERSNITLNTGWALYSQQFFAMFMKRAMFSWRNwNLILLQILALLGIFYFLMSDVELSIGEEDLDREMDLE--QYGQTIVP 938
Cdd:TIGR01257 1338 EDPGVPLNTGARLILQHVQALLVKRFQHTIRS-HKDFLAQIVLPATFVFLALMLSIIIPPFGEYPALTLHpwMYGQQYTF 1416
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 939 FSIS--------------------GNS--------EF---------TTNFVKNLEILLKAKK------------------ 963
Cdd:TIGR01257 1417 FSMDepnsehlevladvllnkpgfGNRclkeewlpEYpcgnstpwkTPSVSPNITHLFQKQKwtaahpspscrcstrekl 1496
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 964 -------------------QKLHEVKGDL----------KTY------------LVDSQKciYSCI--------IAFSIE 994
Cdd:TIGR01257 1497 tmlpecpegagglpppqrtQRSTEILQDLtdrnisdflvKTYpalirsslkskfWVNEQR--YGGIsiggklpaIPITGE 1574
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 995 --------------VNG-------------------NENTVNFWFNDEAYHSSPLSLAVLDNVIFMSLSGPDAS-----I 1036
Cdd:TIGR01257 1575 alvgflsdlgqmmnVSGgpvtreaskempdflkhleTEDNIKVWFNNKGWHALVSFLNVAHNAILRASLPKDRDpeeygI 1654
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1037 TVVNKPQPVRSASSGPKYSMMTGTQ--IALNLYFGVSILVSGFCLLTVNERVTKAKHIQFLSGVYALNFWLSALLWDFLI 1114
Cdd:TIGR01257 1655 TVISQPLNLTKEQLSEITVLTTSVDavVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMN 1734
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1115 FFISCCLLLVVFTFSDLKILVTGYRLLDTLFIFMVFGWAVIPFMYLISFLFSSHTSAYAKLVifnyCAGIFGAVADVTIS 1194
Cdd:TIGR01257 1735 YAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALS----CANLFIGINSSAIT 1810
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1195 SIQGEEAASKSLL-LNAMMvlpihnfgmsisRHYDIQHTKFaCTSKEKVSSVMncSKAVT--------ERSIYTLEYDAV 1265
Cdd:TIGR01257 1811 FVLELFENNRTLLrFNAML------------RKLLIVFPHF-CLGRGLIDLAL--SQAVTdvyaqfgeEHSANPFQWDLI 1875
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1266 GRYLLAMAVTGllfllliflletTLWKVKTFVFRYILFgifkksnKDRVSKELSGE---SEDEDVQNERNRILDNPQESl 1342
Cdd:TIGR01257 1876 GKNLVAMAVEG------------VVYFLLTLLIQHHFF-------LSRWIAEPAKEpifDEDDDVAEERQRIISGGNKT- 1935
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1343 nSIVLIKELIKVY--FSKPvvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVR 1420
Cdd:TIGR01257 1936 -DILRLNELTKVYsgTSSP---AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVH 2011
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1421 SKIGYCPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSV 1500
Cdd:TIGR01257 2012 QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL 2091
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1501 IFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNKFGNVYILKVKI 1580
Cdd:TIGR01257 2092 VLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKI 2171
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1581 NI--DENKDKLEHFKTFVETAFPGSELKDENRGIINYYVPSknNSWGKMFGILEKAKEEFNLEDYSISQITLEQVFLTFA 1658
Cdd:TIGR01257 2172 KSpkDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSS--SSLARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFA 2249
|
....
gi 1387244451 1659 GSQN 1662
Cdd:TIGR01257 2250 KQQT 2253
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
511-732 |
1.75e-109 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 346.80 E-value: 1.75e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFtlQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:cd03263 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGSTIFLK 732
Cdd:cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
1346-1567 |
3.37e-100 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 320.61 E-value: 3.37e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1346 VLIKELIKVYfSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGY 1425
Cdd:cd03263 1 LQIRNLTKTY-KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDE 1505
Cdd:cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1506 PSTGMDPVARRLLWNAVTRTReSGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLK 1567
Cdd:cd03263 160 PTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
511-728 |
1.17e-80 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 265.39 E-value: 1.17e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:COG1131 1 IEVRGLTKRYG----DKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:COG1131 77 YVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHK-ENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:COG1131 157 EPTSGLDPEARRELWELLRELAaEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTP 215
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
1348-1570 |
6.74e-75 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 248.83 E-value: 6.74e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPvvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCP 1427
Cdd:COG1131 3 VRGLTKRYGDKT---ALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1428 QFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPS 1507
Cdd:COG1131 80 QEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 1508 TGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNKF 1570
Cdd:COG1131 160 SGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
511-732 |
2.31e-64 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 218.01 E-value: 2.31e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:cd03265 1 IEVENLVKKYG----DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKE--NRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGSTIFLK 732
Cdd:cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEefGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
511-722 |
4.91e-64 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 215.34 E-value: 4.91e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:cd03230 1 IEVRNLSKRYG----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYfycvikgvppeiqskeinkmlisfgliekhdalaksLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03230 77 YLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILD 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKH-KENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03230 121 EPTSGLDPESRREFWELLRELkKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
528-820 |
2.32e-60 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 209.94 E-value: 2.32e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 528 LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLCPQDDILFHHLTVSEH 607
Cdd:TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDV 687
Cdd:TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 688 LQKHKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGSTIFLKKVYGvGYHLIIVKDHHCDVKEISELIKYHIPEAR 766
Cdd:TIGR01188 167 IRALKEeGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG-KDTLESRPRDIQSLKVEVSMLIAELGETG 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 767 LENNVAAELSfvlpkeytDRfKALFTEMEDRQ----------EELGIASFGISITTMEEVFIRV 820
Cdd:TIGR01188 246 LGLLAVTVDS--------DR-IKILVPDGDETvpeiveaairNGIRIRSISTERPSLDDVFLKL 300
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
511-722 |
2.52e-59 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 204.71 E-value: 2.52e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:COG4555 2 IEVENLSKKYG----KVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:COG4555 78 VLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHK-ENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:COG4555 158 EPTNGLDVMARRLLREILRALKkEGKTVLFSSHIMQEVEALCDRVVILHKGKV 210
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
1346-1567 |
1.83e-57 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 198.36 E-value: 1.83e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1346 VLIKELIKVYFSkpvVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGY 1425
Cdd:cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDE 1505
Cdd:cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 1506 PSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLK 1567
Cdd:cd03265 158 PTIGLDPQTRAHVWEYIEKlKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1348-1572 |
3.08e-54 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 190.07 E-value: 3.08e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPvvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCP 1427
Cdd:COG4555 4 VENLSKKYGKVP---ALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1428 QFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPS 1507
Cdd:COG4555 81 DERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1508 TGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNKFGN 1572
Cdd:COG4555 161 NGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGE 225
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
1348-1557 |
1.44e-53 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 185.29 E-value: 1.44e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPvvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCP 1427
Cdd:cd03230 3 VRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1428 QFDALLDYMTAREimimyarlwgipetkinnyvkksmealNLEsyadkyiytYSGGNKRRLSTAIALMGKPSVIFLDEPS 1507
Cdd:cd03230 80 EEPSLYENLTVRE---------------------------NLK---------LSGGMKQRLALAQALLHDPELLILDEPT 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1508 TGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKF 1557
Cdd:cd03230 124 SGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
529-726 |
1.85e-52 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 183.55 E-value: 1.85e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGqITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLCPQDDILFHHLTVSEHL 608
Cdd:cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 609 YFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR-RFTwDV 687
Cdd:cd03264 94 DYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERiRFR-NL 172
|
170 180 190
....*....|....*....|....*....|....*....
gi 1387244451 688 LQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCG 726
Cdd:cd03264 173 LSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
468-826 |
1.32e-49 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 194.85 E-value: 1.32e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 468 YFFM----QKGYWLGKATSIRKKEdmPVTNtvQNAYFEEEPVGLIAG------IRIQHLYKEFTlqNMTVLAVQDLSLNL 537
Cdd:TIGR01257 1889 YFLLtlliQHHFFLSRWIAEPAKE--PIFD--EDDDVAEERQRIISGgnktdiLRLNELTKVYS--GTSSPAVDRLCVGV 1962
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 538 YEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLCPQDDILFHHLTVSEHLYFYCVIKGV 617
Cdd:TIGR01257 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV 2042
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 618 PPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK-HKENRT 696
Cdd:TIGR01257 2043 PAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSiIREGRA 2122
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 697 VLLTTHHMDEADVLGDRIAIMAKGTLQCCGSTIFLKKVYGVGYhLIIVK------DHHCDVKEISELIKYHIPEARLENN 770
Cdd:TIGR01257 2123 VVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGY-IVTMKikspkdDLLPDLNPVEQFFQGNFPGSVQRER 2201
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 771 VAAELSFVLPKEYTDRfkaLFTEMEDRQEELGIASFGISITTMEEVFIRVSQSNNQ 826
Cdd:TIGR01257 2202 HYNMLQFQVSSSSLAR---IFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTE 2254
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
511-826 |
8.62e-49 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 176.07 E-value: 8.62e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDmvqVRKSLG 590
Cdd:COG4152 2 LELKGLTKRFG----DKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPE---DRRRIG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:COG4152 75 YLPEERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKEN-RTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGSTIFLKKVYGVGYHLIIVKDhhc 749
Cdd:COG4152 155 EPFSGLDPVNVELLKDVIRELAAKgTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNTLRLEADG--- 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 750 DVKEISELikyhiPEARLENNVAAELSFVLPKEYTDRfkALFTEMEDRQEelgIASFGISITTMEEVFIRVSQSNNQ 826
Cdd:COG4152 232 DAGWLRAL-----PGVTVVEEDGDGAELKLEDGADAQ--ELLRALLARGP---VREFEEVRPSLNEIFIEVVGEKAE 298
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
511-728 |
1.22e-48 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 173.29 E-value: 1.22e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYkeFTLQNmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS-KDMVQVRKSL 589
Cdd:COG1122 1 IELENLS--FSYPG-GTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITkKNLRELRRKV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQ--DDILFhHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVV 667
Cdd:COG1122 78 GLVFQnpDDQLF-APTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 668 ILDEPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:COG1122 157 VLDEPTAGLDPRGRRELLELLKRlNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTP 218
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
511-720 |
1.55e-48 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 172.55 E-value: 1.55e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKE-NRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRAlGKCILFSTHIMQEVERLCDRVVVLHRG 212
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
520-721 |
1.79e-48 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 172.27 E-value: 1.79e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 520 FTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMV-QVRKSLGLCPQ--DD 596
Cdd:cd03225 7 FSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLkELRRKVGLVFQnpDD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 597 ILFHHlTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:cd03225 87 QFFGP-TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1387244451 677 DPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGT 721
Cdd:cd03225 166 DPAGRRELLELLKKlKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1345-1561 |
3.78e-44 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 159.84 E-value: 3.78e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1345 IVLIKELIKVY-FSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKI 1423
Cdd:cd03266 1 MITADALTKRFrDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1424 GYCPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFL 1503
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1504 DEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLG 1561
Cdd:cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
511-714 |
5.72e-44 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 159.18 E-value: 5.72e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFtlQNMTVLAvqDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:COG4133 3 LEAENLSCRR--GERLLFS--GLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPPEiqSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:COG4133 79 YLGHADGLKPELTVRENLRFWAALYGLRAD--REAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKEN-RTVLLTTHhmDEADVLGDRI 714
Cdd:COG4133 157 EPFTALDAAGVALLAELIAAHLARgGAVLLTTH--QPLELAAARV 199
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1362-1566 |
6.31e-44 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 162.67 E-value: 6.31e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1362 LAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCPQFDALLDYMTAREI 1441
Cdd:PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVREN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNA 1521
Cdd:PRK13537 101 LLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1387244451 1522 VTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK13537 181 LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1348-1662 |
8.35e-44 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 161.81 E-value: 8.35e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKpvvLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKnilKVRSKIGYCP 1427
Cdd:COG4152 4 LKGLTKRFGDK---TAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDP---EDRRRIGYLP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1428 QFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPS 1507
Cdd:COG4152 78 EERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1508 TGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNKFGNVyilKVKINIDENKD 1587
Cdd:COG4152 158 SGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRN---TLRLEADGDAG 234
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1588 KLEhfktfvetAFPGSELKDENRGIINYYVPSKNNSWgkmfGILEKAKEEFNLEDYSISQITLEQVFLTFAGSQN 1662
Cdd:COG4152 235 WLR--------ALPGVTVVEEDGDGAELKLEDGADAQ----ELLRALLARGPVREFEEVRPSLNEIFIEVVGEKA 297
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
511-720 |
1.12e-43 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 158.21 E-value: 1.12e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDmvqVRKSLG 590
Cdd:cd03269 1 LEVENVTKRFG----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA---ARNRIG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKEN-RTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:cd03269 154 EPFSGLDPVNVELLKDVIRELARAgKTVILSTHQMELVEELCDRVLLLNKG 204
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
1348-1558 |
2.83e-43 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 157.35 E-value: 2.83e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKpvvLAVRNISVAIQKQeCFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCP 1427
Cdd:cd03264 3 LENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1428 QFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPS 1507
Cdd:cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1508 TGMDPVARRLLWNAVTRTREsGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:cd03264 159 AGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
511-726 |
4.61e-43 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 156.53 E-value: 4.61e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQvRKSLG 590
Cdd:cd03259 1 LELKGLSKTYG----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE-RRNIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQK-HKENR-TVLLTTHHMDEADVLGDRIAIMAKGTLQCCG 726
Cdd:cd03259 156 EPLSALDAKLREELREELKElQRELGiTTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
511-719 |
4.85e-43 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 156.86 E-value: 4.85e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydisKDMVQVRKSLG 590
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG----EPVTGPGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMAK 719
Cdd:cd03293 157 EPFSALDALTREQLQEELLDiwRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1353-1566 |
5.30e-43 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 161.15 E-value: 5.30e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1353 KVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCPQFDAL 1432
Cdd:PRK13536 49 KSYGDKAVV---NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1433 LDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDP 1512
Cdd:PRK13536 126 DLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1513 VARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK13536 206 HARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
1350-1577 |
1.20e-42 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 155.95 E-value: 1.20e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFS-KPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT-KNILKVRSKIGYCP 1427
Cdd:COG1122 2 ELENLSFSyPGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITkKNLRELRRKVGLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1428 QF-DALLDYMTAREiMIMYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDE 1505
Cdd:COG1122 82 QNpDDQLFAPTVEE-DVAFGpENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDE 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1506 PSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLknkFGNVYILK 1577
Cdd:COG1122 161 PTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV---FSDYELLE 229
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
530-674 |
1.35e-42 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 152.80 E-value: 1.35e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ-VRKSLGLCPQDDILFHHLTVSEHL 608
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKsLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 609 YFYCVIKGVPPEIQSKEINKMLISFGLIEKHD----ALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTS 674
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADrpvgERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
509-720 |
1.36e-42 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 157.17 E-value: 1.36e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 509 AGIRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISkdmvQVRKS 588
Cdd:COG1116 6 PALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVT----GPGPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 589 LGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVI 668
Cdd:COG1116 82 RGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 669 LDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:COG1116 162 MDEPFGALDALTRERLQDELLRlwQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
1363-1556 |
3.73e-42 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 154.16 E-value: 3.73e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK-VRSKIGYCPQF--DALLDYMTAR 1439
Cdd:cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKeLRRKVGLVFQNpdDQFFGPTVEE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1440 EIMImYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLW 1519
Cdd:cd03225 96 EVAF-GLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL 174
|
170 180 190
....*....|....*....|....*....|....*..
gi 1387244451 1520 NAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:cd03225 175 ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
511-722 |
9.97e-42 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 152.76 E-value: 9.97e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNmtvlAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDmVQVRKSLG 590
Cdd:cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPpeiqSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 671 EPTSGMDPVS----RRFtwdVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03268 152 EPTNGLDPDGikelREL---ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
1348-1558 |
5.24e-41 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 150.45 E-value: 5.24e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNIlKVRSKIGYCP 1427
Cdd:cd03268 3 TNDLTKTYGKKRVL---DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNI-EALRRIGALI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1428 QFDALLDYMTAREIMIMYARLWGIPETKINnyvkKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPS 1507
Cdd:cd03268 79 EAPGFYPNLTARENLRLLARLLGIRKKRID----EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1508 TGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:cd03268 155 NGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
1361-1561 |
3.93e-40 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 148.20 E-value: 3.93e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITkniLKVRSKIGYCPQFDALLDYMTARE 1440
Cdd:cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD---IAARNRIGYLPEERGLYPKMKVID 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1441 IMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWN 1520
Cdd:cd03269 90 QLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKD 169
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1387244451 1521 AVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLG 1561
Cdd:cd03269 170 VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
511-722 |
1.04e-39 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 147.25 E-value: 1.04e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMVQVR 586
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKlsekELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 -KSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:cd03255 81 rRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 666 VVILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADvLGDRIAIMAKGTL 722
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRElnKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
518-721 |
1.67e-39 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 144.31 E-value: 1.67e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 518 KEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQdd 596
Cdd:cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKlPLEELRRRIGYVPQ-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 597 ilfhhltvsehlyfycvikgvppeiqskeinkmlisfgliekhdalaksLSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:cd00267 81 -------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGL 111
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1387244451 677 DPVSRRFTWDVLQKH-KENRTVLLTTHHMDEADVLGDRIAIMAKGT 721
Cdd:cd00267 112 DPASRERLLELLRELaEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
511-722 |
1.66e-38 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 144.19 E-value: 1.66e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI---SKDMVQVR- 586
Cdd:cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLlklSRRLRKIRr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDI--LFHHLTVSEHLY--FYCVIKGVPPEIQSKEINKMLISFGLIEKH-DALAKSLSGGMKRKLSIIIALI 661
Cdd:cd03257 82 KEIQMVFQDPMssLNPRMTIGEQIAepLRIHGKLSKKEARKEAVLLLLVGVGLPEEVlNRYPHELSGGQRQRVAIARALA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 662 GGSKVVILDEPTSGMDPVSRRFTWDVLQKHKE--NRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEelGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
505-754 |
5.59e-38 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 145.33 E-value: 5.59e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 505 VGLIAGIRIQHLYKEFTLQnmtvLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ 584
Cdd:PRK13537 2 PMSVAPIDFRNVEKRYGDK----LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 585 VRKSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEiQSKEINKMLISFGLIE-KHDALAKSLSGGMKRKLSIIIALIGG 663
Cdd:PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA-AARALVPPLLEFAKLEnKADAKVGELSGGMKRRLTLARALVND 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 664 SKVVILDEPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGtlqccgstiflKKVYGVGYHLI 742
Cdd:PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSlLARGKTILLTTHFMEEAERLCDRLCVIEEG-----------RKIAEGAPHAL 225
|
250
....*....|..
gi 1387244451 743 IVKDHHCDVKEI 754
Cdd:PRK13537 226 IESEIGCDVIEI 237
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
511-727 |
1.03e-37 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 142.26 E-value: 1.03e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFtlQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQVR 586
Cdd:cd03261 1 IELRGLTKSF--GGRTVL--KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISglseAELYRLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISF-GLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAvGLRGAEDLYPAELSGGMKKRVALARALALDPE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 666 VVILDEPTSGMDPVSRRFTWDVLQKHKE--NRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKelGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
511-722 |
1.25e-37 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 140.72 E-value: 1.25e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLykEFTLQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSL 589
Cdd:COG4619 1 LELEGL--SFRVGGKPIL--SPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAmPPPEWRRQV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQDDILFHHlTVSEHLYFYCVIKGVPPeiQSKEINKMLISFGLieKHDALAKS---LSGGMKRKLSIIIALIGGSKV 666
Cdd:COG4619 77 AYVPQEPALWGG-TVRDNLPFPFQLRERKF--DRERALELLERLGL--PPDILDKPverLSGGERQRLALIRALLLQPDV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 667 VILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:COG4619 152 LLLDEPTSALDPENTRRVEELLREylAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
511-722 |
1.78e-37 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 141.42 E-value: 1.78e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:cd03219 1 LEVRGLTKRFG----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LC-----PQddiLFHHLTVSEHL---------YFYCVIKGVPPEIQSKE-INKMLISFGLIEKHDALAKSLSGGMKRKLS 655
Cdd:cd03219 77 IGrtfqiPR---LFPELTVLENVmvaaqartgSGLLLARARREEREARErAEELLERVGLADLADRPAGELSYGQQRRLE 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 656 IIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRElRERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
511-728 |
4.89e-37 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 147.74 E-value: 4.89e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNM-TVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQV 585
Cdd:COG1123 261 LEVRNLSKRYPVRGKgGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTklsrRSLREL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 586 RKSLGLCPQD--DILFHHLTVSEHLYFYCVIKGVPPEIQSKE-INKMLISFGLIEKH-DALAKSLSGGMKRKLSIIIALI 661
Cdd:COG1123 341 RRRVQMVFQDpySSLNPRMTVGDIIAEPLRLHGLLSRAERRErVAELLERVGLPPDLaDRYPHELSGGQRQRVAIARALA 420
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 662 GGSKVVILDEPTSGMDPVSRRftwDVLQ-----KHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:COG1123 421 LEPKLLILDEPTSALDVSVQA---QILNllrdlQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPT 489
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
511-727 |
5.11e-37 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 140.51 E-value: 5.11e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFtlqNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSL 589
Cdd:cd03295 1 IEFENVTKRY---GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREqDPVELRRKI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKH--DALAKSLSGGMKRKLSIIIALIGGSKVV 667
Cdd:cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEfaDRYPHELSGGQQQRVGVARALAADPPLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 668 ILDEPTSGMDPVSRrftwDVLQK-----HKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:cd03295 158 LMDEPFGALDPITR----DQLQEefkrlQQElGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
530-722 |
5.80e-37 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 139.99 E-value: 5.80e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLC--PQDDILFHHLTVSEH 607
Cdd:cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGylPQEASIFRKLTVEEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDV 687
Cdd:cd03218 96 ILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKI 175
|
170 180 190
....*....|....*....|....*....|....*.
gi 1387244451 688 LQKHKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03218 176 IKILKDrGIGVLITDHNVRETLSITDRAYIIYEGKV 211
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
511-720 |
8.13e-37 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 139.25 E-value: 8.13e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQVR 586
Cdd:cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTllsgKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKV 666
Cdd:cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 667 VILDEPTSGMDPVSRRFTWDVLQK-HKE-NRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:cd03258 162 LLCDEATSALDPETTQSILALLRDiNRElGLTIVLITHEMEVVKRICDRVAVMEKG 217
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1365-1537 |
1.55e-36 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 137.61 E-value: 1.55e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCPQFDALLDYMTAREIMIM 1444
Cdd:COG4133 19 SGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYLGHADGLKPELTVRENLRF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1445 YARLWGIPETKINnyVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTR 1524
Cdd:COG4133 99 WAALYGLRADREA--IDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAA 176
|
170
....*....|...
gi 1387244451 1525 TRESGKAIIITSH 1537
Cdd:COG4133 177 HLARGGAVLLTTH 189
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
527-726 |
2.95e-36 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 138.93 E-value: 2.95e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 527 VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQVR-KSLGLCPQDDILFHH 601
Cdd:cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAamsrKELRELRrKKISMVFQSFALLPH 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 602 LTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR 681
Cdd:cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1387244451 682 RFTWDV---LQKhKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCG 726
Cdd:cd03294 197 REMQDEllrLQA-ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
511-720 |
8.87e-36 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 134.05 E-value: 8.87e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYkeFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSL 589
Cdd:cd03228 1 IEFKNVS--FSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQDDILFhHLTVSEHLyfycvikgvppeiqskeinkmlisfgliekhdalaksLSGGMKRKLSIIIALIGGSKVVIL 669
Cdd:cd03228 79 AYVPQDPFLF-SGTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILIL 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 670 DEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADvLGDRIAIMAKG 720
Cdd:cd03228 121 DEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR-DADRIIVLDDG 170
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
519-726 |
9.02e-36 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 136.25 E-value: 9.02e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 519 EFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRP---TSGKVYISGYDISKDmvQVRKSLGLCPQD 595
Cdd:cd03234 12 KAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQPRKPD--QFQKCVAYVRQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 596 DILFHHLTVSEHLYFYCVIKGvpPEIQSKEINKMLISFGLIeKHDALA-------KSLSGGMKRKLSIIIALIGGSKVVI 668
Cdd:cd03234 90 DILLPGLTVRETLTYTAILRL--PRKSSDAIRKKRVEDVLL-RDLALTriggnlvKGISGGERRRVSIAVQLLWDPKVLI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 669 LDEPTSGMDPVSRRFTWDVLQKH-KENRTVLLTTHHmDEADV--LGDRIAIMAKGTLQCCG 726
Cdd:cd03234 167 LDEPTSGLDSFTALNLVSTLSQLaRRNRIVILTIHQ-PRSDLfrLFDRILLLSSGEIVYSG 226
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
511-727 |
2.41e-35 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 135.49 E-value: 2.41e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQVR 586
Cdd:COG1127 6 IEVRNLTKSFG--DRVVL--DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITglseKELYELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEiqsKEINKM----LISFGLIEKHDALAKSLSGGMKRKLSIIIALIG 662
Cdd:COG1127 82 RRIGMLFQGGALFDSLTVFENVAFPLREHTDLSE---AEIRELvlekLELVGLPGAADKMPSELSGGMRKRVALARALAL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 663 GSKVVILDEPTSGMDPVSRRFTWDVLQKHKENR--TVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:COG1127 159 DPEILLYDEPTAGLDPITSAVIDELIRELRDELglTSVVVTHDLDSAFAIADRVAVLADGKIIAEGT 225
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
512-727 |
2.89e-35 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 135.94 E-value: 2.89e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 512 RIQHLYKEF-TLQnmtvlAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:COG0411 6 EVRGLTKRFgGLV-----AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LC-----PQddiLFHHLTVSEHL-----------YFYCVIKGVPPEIQSKEINK----MLISFGLIEKHDALAKSLSGGM 650
Cdd:COG0411 81 IArtfqnPR---LFPELTVLENVlvaaharlgrgLLAALLRLPRARREEREAREraeeLLERVGLADRADEPAGNLSYGQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 651 KRKLSIIIALIGGSKVVILDEPTSGMDPV-SRRFTwDVLQKHKENR--TVLLTTHHMDEadVLG--DRIAIMAKGTLQCC 725
Cdd:COG0411 158 QRRLEIARALATEPKLLLLDEPAAGLNPEeTEELA-ELIRRLRDERgiTILLIEHDMDL--VMGlaDRIVVLDFGRVIAE 234
|
..
gi 1387244451 726 GS 727
Cdd:COG0411 235 GT 236
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
511-721 |
2.92e-35 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 133.08 E-value: 2.92e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQV---RK 587
Cdd:cd03229 1 LELKNVSKRYG----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELpplRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 588 SLGLCPQDDILFHHLTVSEHlyfycvikgvppeiqskeinkmlISFGliekhdalaksLSGGMKRKLSIIIALIGGSKVV 667
Cdd:cd03229 77 RIGMVFQDFALFPHLTVLEN-----------------------IALG-----------LSGGQQQRVALARALAMDPDVL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 668 ILDEPTSGMDPVSRRFTWDVLQKHKEN--RTVLLTTHHMDEADVLGDRIAIMAKGT 721
Cdd:cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQlgITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
509-727 |
8.43e-35 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 137.54 E-value: 8.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 509 AGIRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydisKDMVQV--- 585
Cdd:COG3842 4 PALELENVSKRYG----DVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDG----RDVTGLppe 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 586 RKSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:COG3842 76 KRNVGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPR 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 666 VVILDEPTSGMDPVSRRFTWDVLQK-HKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:COG3842 156 VLLLDEPLSALDAKLREEMREELRRlQRElGITFIYVTHDQEEALALADRIAVMNDGRIEQVGT 219
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1348-1556 |
1.39e-34 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 130.06 E-value: 1.39e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK-VRSKIGYC 1426
Cdd:cd00267 2 IENLSFRYGGRTAL---DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEeLRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1427 PQFdalldymtareimimyarlwgipetkinnyvkksmealnlesyadkyiytySGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:cd00267 79 PQL---------------------------------------------------SGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1507 STGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:cd00267 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
1351-1568 |
1.81e-34 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 132.67 E-value: 1.81e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1351 LIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSK--IGYCPQ 1428
Cdd:cd03218 6 LSKRYGKRKVV---NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARlgIGYLPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 FDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPST 1508
Cdd:cd03218 83 EASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1509 GMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:cd03218 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
511-722 |
2.97e-34 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 131.75 E-value: 2.97e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQnmtvLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVqvrKSLG 590
Cdd:TIGR03740 1 LETKNLSKRFGKQ----TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDL---HKIG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPpeiqSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKEN-RTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:TIGR03740 150 EPTNGLDPIGIQELRELIRSFPEQgITVILSSHILSEVQQLADHIGIISEGVL 202
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
511-723 |
6.70e-34 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 130.56 E-value: 6.70e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFtlqNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMVQVR 586
Cdd:COG2884 2 IRFENVSKRY---PGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRlkrrEIPYLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKV 666
Cdd:COG2884 79 RRIGVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPEL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 667 VILDEPTSGMDP-VSRRFtWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQ 723
Cdd:COG2884 159 LLADEPTGNLDPeTSWEI-MELLEEiNRRGTTVLIATHDLELVDRMPKRVLELEDGRLV 216
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
511-722 |
3.04e-33 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 129.32 E-value: 3.04e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNmtvlAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:TIGR04406 2 LVAENLIKSYKKRK----VVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 L--CPQDDILFHHLTVSEHLyfYCV---IKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:TIGR04406 78 IgyLPQEASIFRKLTVEENI--MAVleiRKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPK 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 666 VVILDEPTSGMDPVSrrfTWDV--LQKHKENRT--VLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:TIGR04406 156 FILLDEPFAGVDPIA---VGDIkkIIKHLKERGigVLITDHNVRETLDICDRAYIISDGKV 213
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1361-1565 |
3.34e-33 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 129.44 E-value: 3.34e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERlsitKNILKVRSKIGYCPQFDAL-LDY-MTA 1438
Cdd:COG1121 19 RPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFG----KPPRRARRRIGYVPQRAEVdWDFpITV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1439 REIMIM--YAR--LWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVA 1514
Cdd:COG1121 95 RDVVLMgrYGRrgLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAAT 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1515 RRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKfVCLGSPQH 1565
Cdd:COG1121 175 EEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGL-VAHGPPEE 224
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
511-722 |
3.62e-33 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 128.62 E-value: 3.62e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQVR 586
Cdd:COG1136 5 LELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISslseRELARLR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 -KSLGLCPQDdilFH---HLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIG 662
Cdd:COG1136 85 rRHIGFVFQF---FNllpELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 663 GSKVVILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADvLGDRIAIMAKGTL 722
Cdd:COG1136 162 RPKLILADEPTGNLDSKTGEEVLELLRElnRELGTTIVMVTHDPELAA-RADRVIRLRDGRI 222
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
529-720 |
4.16e-33 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 128.32 E-value: 4.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMvqVRKSLGLCPQDDILFHHLTV 604
Cdd:cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGlpphER--ARAGIGYVPEGRRIFPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHL--YFYCVIKGVPPEIqskeINKMLISF-GLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR 681
Cdd:cd03224 93 EENLllGAYARRRAKRKAR----LERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIV 168
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 682 RFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:cd03224 169 EEIFEAIRElRDEGVTILLVEQNARFALEIADRAYVLERG 208
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
526-723 |
8.44e-33 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 127.83 E-value: 8.44e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 526 TVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLC-PQDDILFHHLTV 604
Cdd:cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVfGQKTQLWWDLPV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS---- 680
Cdd:cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAqeni 192
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1387244451 681 RRFTWDVLQKHKEnrTVLLTTHHMDEADVLGDRIAIMAKGTLQ 723
Cdd:cd03267 193 RNFLKEYNRERGT--TVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
511-763 |
9.65e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 128.96 E-value: 9.65e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYkeFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMV-QVRKSL 589
Cdd:PRK13632 8 IKVENVS--FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLkEIRKKI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQD-DILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVI 668
Cdd:PRK13632 86 GIIFQNpDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 669 LDEPTSGMDPVSRRftwDVLQ-----KHKENRTVLLTTHHMDEAdVLGDRIAIMAKGTLQCCGSTiflkkvygvgyhLII 743
Cdd:PRK13632 166 FDESTSMLDPKGKR---EIKKimvdlRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKP------------KEI 229
|
250 260
....*....|....*....|
gi 1387244451 744 VKDhhcdvKEISELIKYHIP 763
Cdd:PRK13632 230 LNN-----KEILEKAKIDSP 244
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
530-766 |
1.82e-32 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 130.34 E-value: 1.82e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLCPQDDILFHHLTVSEHLY 609
Cdd:PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 610 FYCVIKGVPPEiQSKEINKMLISFGLIE-KHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVL 688
Cdd:PRK13536 137 VFGRYFGMSTR-EIEAVIPSLLEFARLEsKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 689 QK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGtlqccgstiflKKVYGVGYHLIIVKDHHCDVKEI--------SELIK 759
Cdd:PRK13536 216 RSlLARGKTILLTTHFMEEAERLCDRLCVLEAG-----------RKIAEGRPHALIDEHIGCQVIEIyggdphelSSLVK 284
|
....*..
gi 1387244451 760 yhiPEAR 766
Cdd:PRK13536 285 ---PYAR 288
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
1348-1568 |
4.92e-32 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 125.85 E-value: 4.92e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSK--IGY 1425
Cdd:TIGR04406 4 AENLIKSYKKRKVV---NDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARlgIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQFDALLDYMTARE-IMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLD 1504
Cdd:TIGR04406 81 LPQEASIFRKLTVEEnIMAVLEIRKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1505 EPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:TIGR04406 161 EPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVA 224
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
1346-1558 |
5.22e-32 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 124.94 E-value: 5.22e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1346 VLIKELIKVYFSKPvvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITkNILKVRSKIGY 1425
Cdd:cd03259 1 LELKGLSKTYGSVR---ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT-GVPPERRNIGM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQFDALLDYMTAREiMIMYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLD 1504
Cdd:cd03259 77 VFQDYALFPHLTVAE-NIAFGlKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1505 EPSTGMDPVARRLLWNAVTRT-RESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:cd03259 156 EPLSALDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
511-722 |
7.62e-32 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 124.44 E-value: 7.62e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQVR 586
Cdd:cd03292 1 IEFINVTKTYP---NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSdlrgRAIPYLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKV 666
Cdd:cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 667 VILDEPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKiNKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
1350-1568 |
8.52e-32 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 124.92 E-value: 8.52e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFS--KPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNI----LKVRSKI 1423
Cdd:cd03261 2 ELRGLTKSfgGRTVL--KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSeaelYRLRRRM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1424 GYCPQFDALLDYMTARE----IMIMYARLwgiPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPS 1499
Cdd:cd03261 80 GMLFQSGALFDSLTVFEnvafPLREHTRL---SEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1500 VIFLDEPSTGMDPVARRLLWNAVTRTRES-GKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
511-723 |
2.08e-31 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 123.13 E-value: 2.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISkDMVQVRKSLG 590
Cdd:cd03301 1 VELENVTKRFG----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT-DLPPKDRDIA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPP-EIQSK--EINKMLisfgLIEKH-DALAKSLSGGMKRKLSIIIALIGGSKV 666
Cdd:cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKdEIDERvrEVAELL----QIEHLlDRKPKQLSGGQRQRVALGRAIVREPKV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 667 VILDEPTSGMDPVSRRFTWDVLQK-HKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTLQ 723
Cdd:cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRlQQRlGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
511-748 |
2.16e-31 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 124.39 E-value: 2.16e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLykEFTLQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSL 589
Cdd:COG1120 2 LEAENL--SVGYGGRPVL--DDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASlSRRELARRI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQDDILFHHLTVSE--------HLYFYcvikGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALI 661
Cdd:COG1120 78 AYVPQEPPAPFGLTVRElvalgrypHLGLF----GRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 662 GGSKVVILDEPTSGMDPvsrRFTWDVLQ-----KHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST--IF---- 730
Cdd:COG1120 154 QEPPLLLLDEPTSHLDL---AHQLEVLEllrrlARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPeeVLtpel 230
|
250
....*....|....*...
gi 1387244451 731 LKKVYGVgyHLIIVKDHH 748
Cdd:COG1120 231 LEEVYGV--EARVIEDPV 246
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1348-1566 |
2.85e-31 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 123.60 E-value: 2.85e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSK--IGY 1425
Cdd:COG1137 6 AENLVKSYGKRTVV---KDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARlgIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQFDALLDYMTARE-IMIMyARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLD 1504
Cdd:COG1137 83 LPQEASIFRKLTVEDnILAV-LELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1505 EPSTGMDPVA----RRLlwnaVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:COG1137 162 EPFAGVDPIAvadiQKI----IRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEI 223
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
511-728 |
3.79e-31 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 130.02 E-value: 3.79e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLykEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPT---SGKVYISGYDISKDMVQVR- 586
Cdd:COG1123 5 LEVRDL--SVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQD-DILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:COG1123 83 RRIGMVFQDpMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 666 VVILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:COG1123 163 LLIADEPTTALDVTTQAEILDLLRElqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPP 227
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
509-735 |
4.03e-31 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 123.22 E-value: 4.03e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 509 AGIRIQHLYKEFtlQNMTVlaVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKD-MVQ-VR 586
Cdd:COG1137 2 MTLEAENLVKSY--GKRTV--VKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLpMHKrAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDILFHHLTVSEHLyfYCV--IKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGS 664
Cdd:COG1137 78 LGIGYLPQEASIFRKLTVEDNI--LAVleLRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 665 KVVILDEPTSGMDPVSrrftwdV--LQK---HKENR--TVLLTTHHMDEAdvLG--DRIAIMAKGTLQCCGSTIFL---- 731
Cdd:COG1137 156 KFILLDEPFAGVDPIA------VadIQKiirHLKERgiGVLITDHNVRET--LGicDRAYIISEGKVLAEGTPEEIlnnp 227
|
....*.
gi 1387244451 732 --KKVY 735
Cdd:COG1137 228 lvRKVY 233
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
511-727 |
9.31e-31 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 121.96 E-value: 9.31e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydisKDMVQV---RK 587
Cdd:cd03300 1 IELENVSKFYG----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG----KDITNLpphKR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 588 SLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVV 667
Cdd:cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 668 ILDEPTSGMDPVSR---RFTWDVLQKhKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:cd03300 153 LLDEPLGALDLKLRkdmQLELKRLQK-ELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
501-722 |
9.44e-31 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 131.11 E-value: 9.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 501 EEEPVGLIAGIRIQHLYKEFTLQNMT-------VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYI 573
Cdd:COG2274 455 PPEREEGRSKLSLPRLKGDIELENVSfrypgdsPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILI 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 574 SGYDISK-DMVQVRKSLGLCPQDDILFHHlTVSEHLYFYCvikgvpPEIQSKEINKMLISFGL---IEKH----DAL--- 642
Cdd:COG2274 535 DGIDLRQiDPASLRRQIGVVLQDVFLFSG-TIRENITLGD------PDATDEEIIEAARLAGLhdfIEALpmgyDTVvge 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 643 -AKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTH---HMDEAdvlgDRIAIMA 718
Cdd:COG2274 608 gGSNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHrlsTIRLA----DRIIVLD 683
|
....
gi 1387244451 719 KGTL 722
Cdd:COG2274 684 KGRI 687
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
528-722 |
1.27e-30 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 120.82 E-value: 1.27e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 528 LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMvqVRKSLGLCPQD--DILFHHlTVS 605
Cdd:cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE--RRKSIGYVMQDvdYQLFTD-SVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 606 EHLYFycVIKGVPPEIQskEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS-RRFT 684
Cdd:cd03226 91 EELLL--GLKELDAGNE--QAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNmERVG 166
|
170 180 190
....*....|....*....|....*....|....*...
gi 1387244451 685 WDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03226 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
521-742 |
1.33e-30 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 121.73 E-value: 1.33e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 521 TLQNMTV-----LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDmvqvRKSLGLCPQD 595
Cdd:COG1121 8 ELENLTVsyggrPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRA----RRRIGYVPQR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 596 ---DILFHhLTVSE----HLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVI 668
Cdd:COG1121 84 aevDWDFP-ITVRDvvlmGRYGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 669 LDEPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTLqCCGST--IF----LKKVYGVGYHL 741
Cdd:COG1121 163 LDEPFAGVDAATEEALYELLRElRREGKTILVVTHDLGAVREYFDRVLLLNRGLV-AHGPPeeVLtpenLSRAYGGPVAL 241
|
.
gi 1387244451 742 I 742
Cdd:COG1121 242 L 242
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
1348-1566 |
4.19e-30 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 120.48 E-value: 4.19e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPVvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIGYC 1426
Cdd:cd03295 3 FENVTKRYGGGKK--AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREqDPVELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1427 PQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLE--SYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLD 1504
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDpaEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 1505 EPSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:cd03295 161 EPFGALDPITRDQLQEEFKRlQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
1364-1508 |
6.07e-30 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 116.59 E-value: 6.07e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK-VRSKIGYCPQFDALLDYMTAREIM 1442
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKsLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1443 IMYARLWGIPETKINNYVKKSMEALNLESYADKYI----YTYSGGNKRRLSTAIALMGKPSVIFLDEPST 1508
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVgerpGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
511-722 |
8.42e-30 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 122.49 E-value: 8.42e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQVR 586
Cdd:COG1135 2 IELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTalseRELRAAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDILFHHLTVSEHLYFYCVIKGVP-PEIQSKeINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:COG1135 82 RKIGMIFQHFNLLSSRTVAENVALPLEIAGVPkAEIRKR-VAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 666 VVILDEPTSGMDPVSrrfTWDVLQKHKE-NR----TVLLTTHHMdeaDV---LGDRIAIMAKGTL 722
Cdd:COG1135 161 VLLCDEATSALDPET---TRSILDLLKDiNRelglTIVLITHEM---DVvrrICDRVAVLENGRI 219
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
511-759 |
1.05e-29 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 121.73 E-value: 1.05e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEF-----------TLQNM------TVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYI 573
Cdd:COG4586 2 IEVENLSKTYrvyekepglkgALKGLfrreyrEVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 574 SGYDISKDMVQVRKSLGLC-PQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKR 652
Cdd:COG4586 82 LGYVPFKRRKEFARRIGVVfGQRSQLWWDLPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQLSLGQRM 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 653 KLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENR--TVLLTTHHMDEADVLGDRIAIMAKGTLQCCGSTIF 730
Cdd:COG4586 162 RCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERgtTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEE 241
|
250 260
....*....|....*....|....*....
gi 1387244451 731 LKKVYGVGYHLIIVKDHHCDVKEISELIK 759
Cdd:COG4586 242 LKERFGPYKTIVLELAEPVPPLELPRGGE 270
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
530-722 |
1.20e-29 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 117.27 E-value: 1.20e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGL--YRPTSGKVYISGYDISKDmvQVRKSLGLCPQDDILFHHLTVSEH 607
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRrtGLGVSGEVLINGRPLDKR--SFRKIIGYVPQDDILHPTLTVRET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFycvikgvppeiqskeinkmlisfgliekhDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDV 687
Cdd:cd03213 103 LMF-----------------------------AAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL 153
|
170 180 190
....*....|....*....|....*....|....*..
gi 1387244451 688 LQK-HKENRTVLLTTHH-MDEADVLGDRIAIMAKGTL 722
Cdd:cd03213 154 LRRlADTGRTIICSIHQpSSEIFELFDKLLLLSQGRV 190
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
509-741 |
1.25e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 126.42 E-value: 1.25e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 509 AGIRIQHLYkeFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRK 587
Cdd:COG4987 332 PSLELEDVS--FRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDlDEDDLRR 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 588 SLGLCPQDDILFHHlTVSEHLYFYCvikgvpPEIQSKEINKMLISFGLiekHDALAK--------------SLSGGMKRK 653
Cdd:COG4987 410 RIAVVPQRPHLFDT-TLRENLRLAR------PDATDEELWAALERVGL---GDWLAAlpdgldtwlgeggrRLSGGERRR 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 654 LSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADvLGDRIAIMAKGTLQCCGSTIFLKK 733
Cdd:COG4987 480 LALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLE-RMDRILVLEDGRIVEQGTHEELLA 558
|
....*...
gi 1387244451 734 VYGVGYHL 741
Cdd:COG4987 559 QNGRYRQL 566
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1355-1564 |
2.93e-29 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 118.22 E-value: 2.93e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1355 YFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKniLKVRS---KIGYCPQFDA 1431
Cdd:COG1120 11 YGGRPVL---DDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLAS--LSRRElarRIAYVPQEPP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1432 LLDYMTAREIMIM----YARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPS 1507
Cdd:COG1120 86 APFGLTVRELVALgrypHLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPT 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1508 TGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQ 1564
Cdd:COG1120 166 SHLDLAHQLEVLELLRRlARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPE 223
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
511-733 |
3.12e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 119.35 E-value: 3.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLykEFTLQNMT---VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS-----KDM 582
Cdd:PRK13634 3 ITFQKV--EHRYQYKTpfeRRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknKKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 583 VQVRKSLGlcpqddILF----HHL---TVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEkhDALAKS---LSGGMKR 652
Cdd:PRK13634 81 KPLRKKVG------IVFqfpeHQLfeeTVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE--ELLARSpfeLSGGQMR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 653 KLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK-HKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS--T 728
Cdd:PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKlHKEkGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTprE 232
|
....*
gi 1387244451 729 IFLKK 733
Cdd:PRK13634 233 IFADP 237
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
1361-1568 |
3.94e-29 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 117.54 E-value: 3.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKniLK----VRSKIGYCPQFDALLDYM 1436
Cdd:cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITG--LPpheiARLGIGRTFQIPRLFPEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TARE-IMI---------MYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:cd03219 91 TVLEnVMVaaqartgsgLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1507 STGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:cd03219 171 AAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1348-1568 |
4.39e-29 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 117.39 E-value: 4.39e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT----KNILKVRSKI 1423
Cdd:COG1127 8 VRNLTKSFGDRVVL---DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITglseKELYELRRRI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1424 GYCPQFDALLDYMTARE-I---MIMYARLwgiPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPS 1499
Cdd:COG1127 85 GMLFQGGALFDSLTVFEnVafpLREHTDL---SEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1500 VIFLDEPSTGMDPVARRLLWNAVTRTRES-GKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:COG1127 162 ILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
522-720 |
4.40e-29 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 116.48 E-value: 4.40e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 522 LQNMTV-----LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDmvqvRKSLGLCPQ-D 595
Cdd:cd03235 2 VEDLTVsygghPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE----RKRIGYVPQrR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 596 DILFHH-LTVSE----HLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03235 78 SIDRDFpISVRDvvlmGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:cd03235 158 EPFAGVDPKTQEDIYELLRElRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
519-720 |
4.92e-29 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 116.53 E-value: 4.92e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 519 EFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDI 597
Cdd:cd03245 9 SFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYVPQDVT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 598 LFHHlTVSEHLYFYCvikgvpPEIQSKEINKMLISFGL---IEKH-DALA-------KSLSGGMKRKLSIIIALIGGSKV 666
Cdd:cd03245 89 LFYG-TLRDNITLGA------PLADDERILRAAELAGVtdfVNKHpNGLDlqigergRGLSGGQRQAVALARALLNDPPI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 667 VILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMdEADVLGDRIAIMAKG 720
Cdd:cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRP-SLLDLVDRIIVMDSG 214
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
527-720 |
6.66e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 116.62 E-value: 6.66e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 527 VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ--VRKSLGLCPQDDILFHHLTV 604
Cdd:COG0410 16 IHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHriARLGIGYVPEGRRIFPSLTV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHL----YFYCVIKGVPPEIQskEInkmlisFG----LIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:COG0410 96 EENLllgaYARRDRAEVRADLE--RV------YElfprLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGL 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1387244451 677 DPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:COG0410 168 APLIVEEIFEIIRRlNREGVTILLVEQNARFALEIADRAYVLERG 212
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1352-1558 |
1.02e-28 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 116.07 E-value: 1.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1352 IKVYFS--KPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV---ERLSITKNILKVRSK-IGY 1425
Cdd:cd03257 7 LSVSFPtgGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFdgkDLLKLSRRLRKIRRKeIQM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQ--FDALLDYMTAREIMIMYARLWGIP--ETKINNYVKKSMEALNL-ESYADKYIYTYSGGNKRRLSTAIALMGKPSV 1500
Cdd:cd03257 87 VFQdpMSSLNPRMTIGEQIAEPLRIHGKLskKEARKEAVLLLLVGVGLpEEVLNRYPHELSGGQRQRVAIARALALNPKL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1501 IFLDEPSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:cd03257 167 LIADEPTSALDVSVQAQILDLLKKlQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
1348-1540 |
1.10e-28 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 115.66 E-value: 1.10e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFS-KPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVE-----RLSITKNILKVRS 1421
Cdd:cd03255 3 LKNLSKTYGGgGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDgtdisKLSEKELAAFRRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1422 KIGYCPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVI 1501
Cdd:cd03255 83 HIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKII 162
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 1502 FLDEPSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSME 1540
Cdd:cd03255 163 LADEPTGNLDSETGKEVMELLRElNKEAGTTIVVVTHDPE 202
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
509-727 |
1.20e-28 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 119.41 E-value: 1.20e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 509 AGIRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KD--- 581
Cdd:COG3839 2 ASLELENVSKSYG----GVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTdlppKDrni 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 582 -MVqvrkslglcPQDDILFHHLTVSEHLYFYCVIKGVPP-EIQSK--EINKMLisfGLIEKHDALAKSLSGGMKRKLSII 657
Cdd:COG3839 78 aMV---------FQSYALYPHMTVYENIAFPLKLRKVPKaEIDRRvrEAAELL---GLEDLLDRKPKQLSGGQRQRVALG 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 658 IALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK-HKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:COG3839 146 RALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRlHRRlGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGT 217
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
511-722 |
1.57e-28 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 114.93 E-value: 1.57e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI---SKDMVQVRK 587
Cdd:cd03262 1 IEIKNLHKSFG--DFHVL--KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtddKKNINELRQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 588 SLGLCPQDDILFHHLTVSEHLYFYCV-IKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKV 666
Cdd:cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIkVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 667 VILDEPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03262 157 MLFDEPTSALDPELVGEVLDVMKDlAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
511-720 |
1.60e-28 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 115.74 E-value: 1.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFtlqNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQVR 586
Cdd:cd03256 1 IEVENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINklkgKALRQLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDILFHHLTVSE--------HLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIII 658
Cdd:cd03256 78 RQIGMIFQQFNLIERLSVLEnvlsgrlgRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIAR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 659 ALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRinREEGITVIVSLHQVDLAREYADRIVGLKDG 221
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1348-1566 |
1.75e-28 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 121.93 E-value: 1.75e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKP--VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT----KNILKVRS 1421
Cdd:COG1123 263 VRNLSKRYPVRGkgGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTklsrRSLRELRR 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1422 KIGYCPQ--FDALLDYMTAREIMIMYARLWGI-PETKINNYVKKSMEALNL-ESYADKYIYTYSGGNKRRLSTAIALMGK 1497
Cdd:COG1123 343 RVQMVFQdpYSSLNPRMTVGDIIAEPLRLHGLlSRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIARALALE 422
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1498 PSVIFLDEPSTGMDP-VARRLLwNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:COG1123 423 PKLLILDEPTSALDVsVQAQIL-NLLRDlQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEV 492
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
517-722 |
3.64e-28 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 114.74 E-value: 3.64e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 517 YKEFTLQNmtvlavqdLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISkDMVQVRKSLGLCPQDD 596
Cdd:cd03299 10 WKEFKLKN--------VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT-NLPPEKRDISYVPQNY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 597 ILFHHLTVSEHLYFYCVIKGVP-PEIQSK--EINKML-ISFGLIEKhdalAKSLSGGMKRKLSIIIALIGGSKVVILDEP 672
Cdd:cd03299 81 ALFPHMTVYKNIAYGLKKRKVDkKEIERKvlEIAEMLgIDHLLNRK----PETLSGGEQQRVAIARALVVNPKILLLDEP 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 673 TSGMDPVSRRFTWDVLQK-HKENR-TVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03299 157 FSALDVRTKEKLREELKKiRKEFGvTVLHVTHDFEEAWALADKVAIMLNGKL 208
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1363-1577 |
3.83e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 115.92 E-value: 3.83e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK---VRSKIGYCPQFD--ALLDYMT 1437
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKlsdIRKKVGLVFQYPeyQLFEETI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1438 AREIMIMYARLwGIPETKINNYVKKSMEALNL--ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVAR 1515
Cdd:PRK13637 102 EKDIAFGPINL-GLSEEEIENRVKRAMNIVGLdyEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 1516 RLLWNAVTRTRESGK-AIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLknkFGNVYILK 1577
Cdd:PRK13637 181 DEILNKIKELHKEYNmTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV---FKEVETLE 240
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
512-726 |
4.62e-28 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 112.53 E-value: 4.62e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 512 RIQHLYkeFTLQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLG 590
Cdd:cd03214 1 EVENLS--VGYGGRTVL--DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASlSPKELARKIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQddilfhhltvsehlyfycvikgvppeiqskeinkMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03214 77 YVPQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLD 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCG 726
Cdd:cd03214 123 EPTSHLDIAHQIELLELLRRlaRERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
511-722 |
5.85e-28 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 114.52 E-value: 5.85e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS-KDMVQVRKSL 589
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTrRRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQDDIL-FH-HLTVSEHLYFYCVIKGVPPeiQSKEINKMLISFGLiekHDALAK----SLSGGMKRKLSIIIALIGG 663
Cdd:COG1124 82 QMVFQDPYAsLHpRHTVDRILAEPLRIHGLPD--REERIAELLEQVGL---PPSFLDryphQLSGGQRQRVAIARALILE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 664 SKVVILDEPTSGMDPVSRRFTWDVLQ--KHKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:COG1124 157 PELLLLDEPTSALDVSVQAEILNLLKdlREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRI 217
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
511-728 |
5.97e-28 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 113.81 E-value: 5.97e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLY-----RPTSGKVYISG---YDISKDM 582
Cdd:cd03260 1 IELRDLNVYYG----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGkdiYDLDVDV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 583 VQVRKSLGLCPQDDILFHhLTVSEHLYFYCVIKGVPPEIQSKEI-NKMLISFGLIE--KHDALAKSLSGGMKRKLSIIIA 659
Cdd:cd03260 77 LELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDERvEEALRKAALWDevKDRLHALGLSGGQQQRLCLARA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 660 LIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
511-723 |
1.46e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 112.00 E-value: 1.46e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLqnmtvlavqDLSLNLyEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISG---YDISKDM---VQ 584
Cdd:cd03297 4 VDIEKRLPDFTL---------KIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlFDSRKKInlpPQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 585 VRKsLGLCPQDDILFHHLTVSEHLYFycVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGS 664
Cdd:cd03297 74 QRK-IGLVFQQYALFPHLNVRENLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQP 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 665 KVVILDEPTSGMDPVSRRFTWDVLQKHKE--NRTVLLTTHHMDEADVLGDRIAIMAKGTLQ 723
Cdd:cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKnlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
489-727 |
1.70e-27 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 117.06 E-value: 1.70e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 489 MPVTNTVQNAY--FEEEPVGLIAGIRiQHLYKEFTLQNMTV-LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYR 565
Cdd:PRK10070 1 MAIKLEIKNLYkiFGEHPQRAFKYIE-QGLSKEQILEKTGLsLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 566 PTSGKVYISGYDISK----DMVQV-RKSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHD 640
Cdd:PRK10070 80 PTRGQVLIDGVDIAKisdaELREVrRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 641 ALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMA 718
Cdd:PRK10070 160 SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKlqAKHQRTIVFISHDLDEAMRIGDRIAIMQ 239
|
....*....
gi 1387244451 719 KGTLQCCGS 727
Cdd:PRK10070 240 NGEVVQVGT 248
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1354-1566 |
2.16e-27 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 118.47 E-value: 2.16e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1354 VYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTG---EEVASSGDVFVERLSITKNILKVRSK-IGYCPQ- 1428
Cdd:COG1123 12 VRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGllpHGGRISGEVLLDGRDLLELSEALRGRrIGMVFQd 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 FDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPST 1508
Cdd:COG1123 92 PMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDLLIADEPTT 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1509 GMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:COG1123 172 ALDVTTQAEILDLLRElQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEI 230
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1354-1561 |
2.34e-27 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 111.47 E-value: 2.34e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1354 VYFSKPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVerlsITKNILKVRSKIGYCPQ-FDAL 1432
Cdd:cd03235 7 VSYGGHPVL--EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV----FGKPLEKERKRIGYVPQrRSID 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1433 LDY-MTAREIMIM--YARLWGIPETKINNYvKKSMEAL---NLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:cd03235 81 RDFpISVRDVVLMglYGHKGLFRRLSKADK-AKVDEALervGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1507 STGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKlAIMVKGKFVCLG 1561
Cdd:cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
511-720 |
2.91e-27 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 113.19 E-value: 2.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYkeFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMV-QVRKSL 589
Cdd:PRK13635 6 IRVEHIS--FRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVwDVRRQV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQD-DILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSI--IIALigGSKV 666
Cdd:PRK13635 84 GMVFQNpDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIagVLAL--QPDI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 667 VILDEPTSGMDPVSRRFTWDVLQKHKENR--TVLLTTHHMDEAdVLGDRIAIMAKG 720
Cdd:PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKgiTVLSITHDLDEA-AQADRVIVMNKG 216
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
521-727 |
2.94e-27 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 118.71 E-value: 2.94e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 521 TLQNMTVL------AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCP 593
Cdd:COG4988 338 ELEDVSFSypggrpALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDlDPASWRRQIAWVP 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 594 QDDILFhHLTVSEHLYFYCvikgvpPEIQSKEINKMLISFGLIEKHDAL-----------AKSLSGGMKRKLSIIIALIG 662
Cdd:COG4988 418 QNPYLF-AGTIRENLRLGR------PDASDEELEAALEAAGLDEFVAALpdgldtplgegGRGLSGGQAQRLALARALLR 490
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 663 GSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEAdVLGDRIAIMAKGTLQCCGS 727
Cdd:COG4988 491 DAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALL-AQADRILVLDDGRIVEQGT 554
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
510-727 |
3.21e-27 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 112.05 E-value: 3.21e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 510 GIRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKsL 589
Cdd:cd03296 2 SIEVRNVSKRFG----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN-V 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQDDILFHHLTVSEHLYFYCVIKGV---PPEIQSKE-INKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRserPPEAEIRAkVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 666 VVILDEPTSGMDPVSRR--FTWdVLQKHKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:cd03296 157 VLLLDEPFGALDAKVRKelRRW-LRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
1360-1558 |
4.11e-27 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 111.66 E-value: 4.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1360 VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYC-PQFDALLDYMTA 1438
Cdd:cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVfGQKTQLWWDLPV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1439 REIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLL 1518
Cdd:cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1387244451 1519 WNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:cd03267 193 RNFLKEyNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1345-1572 |
5.42e-27 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 111.13 E-value: 5.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1345 IVLIKELIKVYFSKP-VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT----KNILKV 1419
Cdd:cd03258 1 MIELKNVSKVFGDTGgKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTllsgKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1420 RSKIGYCPQFDALLDYMTAREiMIMYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKP 1498
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFE-NVALPlEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1499 SVIFLDEPSTGMDP-----VARRLLwnavTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLknkFGN 1572
Cdd:cd03258 160 KVLLCDEATSALDPettqsILALLR----DINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV---FAN 231
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1348-1574 |
6.15e-27 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 111.43 E-value: 6.15e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPV-VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKV-RSKIGY 1425
Cdd:COG1124 4 VRNLSVSYGQGGRrVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAfRRRVQM 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQ--FDALLDYMTAREIMIMYARLWGIPEtkINNYVKKSMEALNL-ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIF 1502
Cdd:COG1124 84 VFQdpYASLHPRHTVDRILAEPLRIHGLPD--REERIAELLEQVGLpPSFLDRYPHQLSGGQRQRVAIARALILEPELLL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 1503 LDEPSTGMDPVARRLLWNAVTRTR-ESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNKFGNVY 1574
Cdd:COG1124 162 LDEPTSALDVSVQAEILNLLKDLReERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPKHPY 234
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
511-722 |
6.28e-27 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 108.67 E-value: 6.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISkdmvqvrkslG 590
Cdd:cd03216 1 LELRGITKRFG----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS----------F 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDdilfhhltvSEHLYFYCVikgvppeIQskeinkmlisfgliekhdalaksLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03216 67 ASPRD---------ARRAGIAMV-------YQ-----------------------LSVGERQMVEIARALARNARLLILD 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 671 EPTSGMDP--VSRRFtwDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03216 108 EPTAALTPaeVERLF--KVIRRlRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
511-722 |
6.52e-27 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 114.13 E-value: 6.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI----SKDMVQVR 586
Cdd:PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLtalsEKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLcpqddiLFHHL------TVSEHLYFYCVIKGVP-PEIQSKeINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIA 659
Cdd:PRK11153 82 RQIGM------IFQHFnllssrTVFDNVALPLELAGTPkAEIKAR-VTELLELVGLSDKADRYPAQLSGGQKQRVAIARA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 660 LIGGSKVVILDEPTSGMDPVSrrfTWDVLQKHKE-NR----TVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:PRK11153 155 LASNPKVLLCDEATSALDPAT---TRSILELLKDiNRelglTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1360-1653 |
6.55e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 113.26 E-value: 6.55e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1360 VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV-------ERLSITKNILKV---RSKigycpqf 1429
Cdd:COG4586 34 EVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVlgyvpfkRRKEFARRIGVVfgqRSQ------- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1430 daLLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTG 1509
Cdd:COG4586 107 --LWWDLPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIG 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1510 MDPVARRLLWNAVTRT-RESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNKFGNVYILKVKINIDENKDK 1588
Cdd:COG4586 185 LDVVSKEAIREFLKEYnRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKERFGPYKTIVLELAEPVPPLE 264
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1589 LEHFKTFVEtafpgselKDENRGIINyyVPSKNNswgkMFGILEKAKEEFNLEDYSISQITLEQV 1653
Cdd:COG4586 265 LPRGGEVIE--------REGNRVRLE--VDPRES----LAEVLARLLARYPVRDLTIEEPPIEEV 315
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
528-720 |
1.13e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 111.72 E-value: 1.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 528 LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS--KDMVQVRKSLGLCPQD-DILFHHLTV 604
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSdeENLWDIRNKAGMVFQNpDNQIVATIV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFT 684
Cdd:PRK13633 104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREV 183
|
170 180 190
....*....|....*....|....*....|....*...
gi 1387244451 685 WDVLQK--HKENRTVLLTTHHMDEAdVLGDRIAIMAKG 720
Cdd:PRK13633 184 VNTIKElnKKYGITIILITHYMEEA-VEADRIIVMDSG 220
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
529-717 |
1.72e-26 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 118.30 E-value: 1.72e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI-SKDMvQVRKSLGLCPQDDILFHHLTVSEH 607
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVdAGDI-ATRRRVGYMSQAFSLYGELTVRQN 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR-RFtWD 686
Cdd:NF033858 360 LELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARdMF-WR 438
|
170 180 190
....*....|....*....|....*....|...
gi 1387244451 687 VLQK--HKENRTVLLTTHHMDEADvLGDRIAIM 717
Cdd:NF033858 439 LLIElsREDGVTIFISTHFMNEAE-RCDRISLM 470
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1364-1558 |
2.50e-26 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 109.79 E-value: 2.50e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSG---DVFVERLSITkNILKVRSKIGYC-PQF-DALLDYMTA 1438
Cdd:COG1119 19 LDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGndvRLFGERRGGE-DVWELRKRIGLVsPALqLRFPRDETV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1439 REIMI--MYA--RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVA 1514
Cdd:COG1119 98 LDVVLsgFFDsiGLYREPTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGA 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1387244451 1515 RRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:COG1119 178 RELLLALLDKlAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVV 222
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
511-720 |
3.89e-26 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 114.74 E-value: 3.89e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISG--YDISKDMVQVRKS 588
Cdd:COG3845 6 LELRGITKRFG----GVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGkpVRIRSPRDAIALG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 589 LGLCPQDDILFHHLTVSEHlyfycVIKGVPPE----IQSKEINKMLISfgLIEKH------DALAKSLSGGMKRKLSIII 658
Cdd:COG3845 82 IGMVHQHFMLVPNLTVAEN-----IVLGLEPTkggrLDRKAARARIRE--LSERYgldvdpDAKVEDLSVGEQQRVEILK 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 659 ALIGGSKVVILDEPTSGMDP--------VSRRFTwdvlqkhKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:COG3845 155 ALYRGARILILDEPTAVLTPqeadelfeILRRLA-------AEGKSIIFITHKLREVMAIADRVTVLRRG 217
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1363-1571 |
4.33e-26 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 116.76 E-value: 4.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVfveRL---SITKNILKVRSKIGYCPQFDALLDYMTAR 1439
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEA---WLfgqPVDAGDIATRRRVGYMSQAFSLYGELTVR 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1440 EIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVAR---- 1515
Cdd:NF033858 358 QNLELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARdmfw 437
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1516 RLLwnaVTRTRESGKAIIITSHSMEE---CDalctKLAIMVKGKFVCLGSPQHLKNKFG 1571
Cdd:NF033858 438 RLL---IELSREDGVTIFISTHFMNEaerCD----RISLMHAGRVLASDTPAALVAARG 489
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
522-706 |
7.49e-26 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 108.25 E-value: 7.49e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 522 LQNMTV-----LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGK-VYISGYDISK-DMVQVRKSLGLCPQ 594
Cdd:COG1119 6 LRNVTVrrggkTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNdVRLFGERRGGeDVWELRKRIGLVSP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 595 DdiLFHHLTVSEHLY------FYCVIkGV---PPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:COG1119 86 A--LQLRFPRDETVLdvvlsgFFDSI-GLyrePTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDPE 162
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1387244451 666 VVILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDE 706
Cdd:COG1119 163 LLILDEPTAGLDLGARELLLALLDKlaAEGAPTLVLVTHHVEE 205
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1344-1566 |
7.65e-26 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 108.06 E-value: 7.65e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1344 SIVLIKELIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSK- 1422
Cdd:PRK10895 2 ATLTAKNLAKAYKGRRVV---EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1423 -IGYCPQ----------FDALLDYMTAREIMIMYARlwgipetkiNNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTA 1491
Cdd:PRK10895 79 gIGYLPQeasifrrlsvYDNLMAVLQIRDDLSAEQR---------EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1492 IALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1343-1540 |
8.63e-26 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 107.44 E-value: 8.63e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1343 NSIVLIKELIKVYFSKPV-VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKniLKV-- 1419
Cdd:COG1136 2 SPLLELRNLTKSYGTGEGeVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISS--LSEre 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1420 -----RSKIGYCPQFDALLDYMTARE-IMIMyARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIA 1493
Cdd:COG1136 80 larlrRRHIGFVFQFFNLLPELTALEnVALP-LLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARA 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1387244451 1494 LMGKPSVIFLDEPsTG-MDPVARRLLWNAVTR-TRESGKAIIITSHSME 1540
Cdd:COG1136 159 LVNRPKLILADEP-TGnLDSKTGEEVLELLRElNRELGTTIVMVTHDPE 206
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
1362-1569 |
9.72e-26 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 107.32 E-value: 9.72e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1362 LAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITkNILKVRSKIGYCPQFDALLDYMTAREI 1441
Cdd:cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT-NLPPHKRPVNTVFQNYALFPHLTVFEN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNA 1521
Cdd:cd03300 93 IAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1387244451 1522 VTRT-RESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNK 1569
Cdd:cd03300 173 LKRLqKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
1346-1552 |
1.06e-25 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 106.79 E-value: 1.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1346 VLIKELIKVYFSK-PVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKnilkVRSKIG 1424
Cdd:cd03293 1 LEVRNVSKTYGGGgGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1425 YCPQFDALLDYMTAREiMIMYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFL 1503
Cdd:cd03293 77 YVFQQDALLPWLTVLD-NVALGlELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1504 DEPSTGMDPVARRLLWNAVTRT-RESGKAIIITSHSMEECDALCTKLAIM 1552
Cdd:cd03293 156 DEPFSALDALTREQLQEELLDIwRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1361-1564 |
1.22e-25 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 107.82 E-value: 1.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKniLK----VRSKIGYCPQFDALLDYM 1436
Cdd:COG0411 17 LVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITG--LPphriARLGIARTFQNPRLFPEL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TARE-IMI-MYARL-------------WGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVI 1501
Cdd:COG0411 95 TVLEnVLVaAHARLgrgllaallrlprARREEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIARALATEPKLL 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1502 FLDEPSTGMDPVARRLLWNAVTRTR-ESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQ 1564
Cdd:COG0411 175 LLDEPAAGLNPEETEELAELIRRLRdERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPA 238
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
529-722 |
1.96e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 107.86 E-value: 1.96e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS---KDMVQVRKSLGLCPQ--DDILFHHlT 603
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKydkKSLLEVRKTVGIVFQnpDDQLFAP-T 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 604 VSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRF 683
Cdd:PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 684 TWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:PRK13639 176 IMKLLYDlNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
532-722 |
2.84e-25 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 105.27 E-value: 2.84e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 532 DLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKdMVQVRKSLGLCPQDDILFHHLTVSEHlyfy 611
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA-APPADRPVSMLFQENNLFAHLTVEQN---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 612 cVIKGVPP-----EIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWD 686
Cdd:cd03298 91 -VGLGLSPglkltAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD 169
|
170 180 190
....*....|....*....|....*....|....*...
gi 1387244451 687 -VLQKHKENR-TVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03298 170 lVLDLHAETKmTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
1350-1556 |
3.01e-25 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 104.19 E-value: 3.01e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT---KNILKVRSKIGYC 1426
Cdd:cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTdleDELPPLRRRIGMV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1427 PQFDALLDYMTAREImIMYArlwgipetkinnyvkksmealnlesyadkyiytYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:cd03229 82 FQDFALFPHLTVLEN-IALG---------------------------------LSGGQQQRVALARALAMDPDVLLLDEP 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1507 STGMDPVARR----LLwnaVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:cd03229 128 TSALDPITRRevraLL---KSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
1361-1575 |
3.31e-25 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 106.96 E-value: 3.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT----KNILKVRSK-IGYCPQFDALLDY 1435
Cdd:cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAamsrKELRELRRKkISMVFQSFALLPH 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1436 MTAREIMIMYARLWGIPEtkiNNYVKKSMEALN---LESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDP 1512
Cdd:cd03294 117 RTVLENVAFGLEVQGVPR---AEREERAAEALElvgLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1513 VARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNKFGNVYI 1575
Cdd:cd03294 194 LIRREMQDELLRlQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYV 257
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
530-720 |
4.22e-25 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 105.63 E-value: 4.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK---DMVQVRKSLGLCPQddilfhhLTVSE 606
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEpgpDRMVVFQNYSLLPW-------LTVRE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 607 HLYFY--CVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR-RF 683
Cdd:TIGR01184 74 NIALAvdRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRgNL 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 1387244451 684 TWDVLQKHKENR-TVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:TIGR01184 154 QEELMQIWEEHRvTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
1365-1557 |
4.56e-25 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 104.90 E-value: 4.56e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIGYCPQFDALLDyMTAREIMi 1443
Cdd:COG4619 17 SPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAmPPPEWRRQVAYVPQEPALWG-GTVRDNL- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1444 myARLWGIPETKIN-NYVKKSMEALNL-ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNA 1521
Cdd:COG4619 95 --PFPFQLRERKFDrERALELLERLGLpPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSALDPENTRRVEEL 172
|
170 180 190
....*....|....*....|....*....|....*..
gi 1387244451 1522 VTRTR-ESGKAIIITSHSMEECDALCTKLAIMVKGKF 1557
Cdd:COG4619 173 LREYLaEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
529-727 |
5.15e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 107.06 E-value: 5.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ---VRKSLGLCPQ--DDILFHHlT 603
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKlsdIRKKVGLVFQypEYQLFEE-T 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 604 VSEHLYFYCVIKGVPPEIQSKEINKMLISFGLiEKHDALAKS---LSGGMKRKLSI--IIALigGSKVVILDEPTSGMDP 678
Cdd:PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGL-DYEDYKDKSpfeLSGGQKRRVAIagVVAM--EPKILILDEPTAGLDP 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 679 VSRRftwDVLQK----HKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:PRK13637 178 KGRD---EILNKikelHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
530-727 |
5.92e-25 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 105.36 E-value: 5.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS--KDMVQVRKSLGLCPQDDILFHHLTVSEH 607
Cdd:PRK10895 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARARRGIGYLPQEASIFRRLSVYDN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFYCVI-KGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWD 686
Cdd:PRK10895 99 LMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR 178
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1387244451 687 VLQKHKENRT-VLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:PRK10895 179 IIEHLRDSGLgVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
510-727 |
1.25e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 105.60 E-value: 1.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 510 GIRIQHLykEFTLQNMTVL---AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS-----KD 581
Cdd:PRK13649 2 GINLQNV--SYTYQAGTPFegrALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknKD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 582 MVQVRKSLGLCPQ--DDILFHHlTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEkhDALAKS---LSGGMKRKLSI 656
Cdd:PRK13649 80 IKQIRKKVGLVFQfpESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE--SLFEKNpfeLSGGQMRRVAI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 657 IIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKlHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1325-1564 |
2.18e-24 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 109.51 E-value: 2.18e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1325 EDVQNERNRILDNPqeslnsIVLIKELIKVYFS--KPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASS 1402
Cdd:TIGR03269 265 SEVEKECEVEVGEP------IIKVRNVSKRYISvdRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1403 GDVFV----ERLSITKN--ILKVRSK--IGYCPQFDAL------LDYMT---AREIMIMYARLWGIPETKINNYVKKSMe 1465
Cdd:TIGR03269 339 GEVNVrvgdEWVDMTKPgpDGRGRAKryIGILHQEYDLyphrtvLDNLTeaiGLELPDELARMKAVITLKMVGFDEEKA- 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1466 alnlESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRES-GKAIIITSHSMEECDA 1544
Cdd:TIGR03269 418 ----EEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLD 493
|
250 260
....*....|....*....|
gi 1387244451 1545 LCTKLAIMVKGKFVCLGSPQ 1564
Cdd:TIGR03269 494 VCDRAALMRDGKIVKIGDPE 513
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
529-762 |
2.24e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 105.25 E-value: 2.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI---SKDMV--QVRKSLGLCPQ--DDILFHH 601
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIthkTKDKYirPVRKRIGMVFQfpESQLFED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 602 lTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLieKHDALAKS---LSGGMKRKLSIIIALIGGSKVVILDEPTSGMDP 678
Cdd:PRK13646 102 -TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF--SRDVMSQSpfqMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 679 VSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMAKGTL--QCCGSTIFLKKVYgvgyhliiVKDHHCDVKEI 754
Cdd:PRK13646 179 QSKRQVMRLLKSlqTDENKTIILVSHDMNEVARYADEVIVMKEGSIvsQTSPKELFKDKKK--------LADWHIGLPEI 250
|
250
....*....|...
gi 1387244451 755 SEL-----IKYHI 762
Cdd:PRK13646 251 VQLqydfeQKYQT 263
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
529-720 |
3.89e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 104.05 E-value: 3.89e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ-VRKSLGLCPQ--DDILFhHLTVS 605
Cdd:PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKwVRSKVGLVFQdpDDQVF-SSTVW 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 606 EHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTW 685
Cdd:PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178
|
170 180 190
....*....|....*....|....*....|....*.
gi 1387244451 686 DVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK13647 179 EILDRlHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
512-728 |
4.37e-24 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 102.53 E-value: 4.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 512 RIQHLYKEFTLQnmtvlavQDLSLNlyEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRkslgl 591
Cdd:COG3840 6 DLTYRYGDFPLR-------FDLTIA--AGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAER----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 592 cP-----QDDILFHHLTVSEHLYFycvikGVPP-----EIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALI 661
Cdd:COG3840 72 -PvsmlfQENNLFPHLTVAQNIGL-----GLRPglkltAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLV 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 662 GGSKVVILDEPTSGMDPVSRRFTWDVLQK-HKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:COG3840 146 RKRPILLLDEPFSALDPALRQEMLDLVDElCRErGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPT 214
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
511-717 |
5.26e-24 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 107.80 E-value: 5.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:COG1129 5 LEMRGISKSFG----GVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 --LCPQDDILFHHLTVSEHLYFycvikGVPPE----IQSKEIN----KMLISFGLIEKHDALAKSLSGGMKRKLSIIIAL 660
Cdd:COG1129 81 iaIIHQELNLVPNLSVAENIFL-----GREPRrgglIDWRAMRrrarELLARLGLDIDPDTPVGDLSVAQQQLVEIARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 661 IGGSKVVILDEPTSGMDP--VSRRFtwDVLQKHK-ENRTVLLTTHHMDEADVLGDRIAIM 717
Cdd:COG1129 156 SRDARVLILDEPTASLTEreVERLF--RIIRRLKaQGVAIIYISHRLDEVFEIADRVTVL 213
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
1363-1568 |
7.29e-24 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 101.74 E-value: 7.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKniLK----VRSKIGYCPQFDALLDYMTA 1438
Cdd:cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITG--LPpherARAGIGYVPEGRRIFPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1439 REIMIMYARLWGIPEtkinnyVKKSMEAL-----NLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPV 1513
Cdd:cd03224 93 EENLLLGAYARRRAK------RKARLERVyelfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1514 ARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:cd03224 167 IVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
511-720 |
8.12e-24 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 102.86 E-value: 8.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEF---TLQNMTVLavQDLSLNLYEGQ-ITVLlGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKdMVQVR 586
Cdd:COG1101 2 LELKNLSKTFnpgTVNEKRAL--DGLNLTIEEGDfVTVI-GSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTK-LPEYK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KS-----------LGLCPqddilfhHLTVSEHL-------YFYCVIKGVPPEiQSKEINKMLISFGL-IEKH-DALAKSL 646
Cdd:COG1101 78 RAkyigrvfqdpmMGTAP-------SMTIEENLalayrrgKRRGLRRGLTKK-RRELFRELLATLGLgLENRlDTKVGLL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 647 SGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFtwdVLQK-----HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:COG1101 150 SGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAAL---VLELtekivEENNLTTLMVTHNMEQALDYGNRLIMMHEG 225
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
511-732 |
1.07e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 102.96 E-value: 1.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLykEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTS---GKVYISGYDI-SKDMVQVR 586
Cdd:PRK13640 6 VEFKHV--SFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLtAKTVWDIR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQD-DILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:PRK13640 84 EKVGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 666 VVILDEPTSGMDPVSRRFTWDVLQKHKE--NRTVLLTTHHMDEAdVLGDRIAIMAKGTLQCCGS--TIFLK 732
Cdd:PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKknNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSpvEIFSK 233
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
1364-1561 |
1.21e-23 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 99.82 E-value: 1.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVerlsitknilkvrskigycpqFDALLDYMTAREImi 1443
Cdd:cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL---------------------DGKDLASLSPKEL-- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1444 myARLWGipetkinnYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDP--------VAR 1515
Cdd:cd03214 72 --ARKIA--------YVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIahqielleLLR 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1387244451 1516 RLlwnavtrTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLG 1561
Cdd:cd03214 142 RL-------ARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
529-727 |
1.24e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 101.73 E-value: 1.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMVQV---RKSlglcpQDDILFHH 601
Cdd:COG4674 25 ALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGldehEIARLgigRKF-----QKPTVFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 602 LTVSEHLYF-YCVIKGV-------PPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPT 673
Cdd:COG4674 100 LTVFENLELaLKGDRGVfaslfarLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKLLLLDEPV 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 674 SGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:COG4674 180 AGMTDAETERTAELLKSLAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGS 233
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1364-1561 |
1.26e-23 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 99.93 E-value: 1.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTG--EEVASSGDVFVERLSITKNilKVRSKIGYCPQFDALLDYMTAREI 1441
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPLDKR--SFRKIIGYVPQDDILHPTLTVRET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYARLWGIpetkinnyvkksmealnlesyadkyiytySGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNA 1521
Cdd:cd03213 103 LMFAAKLRGL-----------------------------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1387244451 1522 VTRTRESGKAIIITSH----SMEEcdaLCTKLAIMVKGKFVCLG 1561
Cdd:cd03213 154 LRRLADTGRTIICSIHqpssEIFE---LFDKLLLLSQGRVIYFG 194
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
511-722 |
1.67e-23 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 106.81 E-value: 1.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEF-TLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ----- 584
Cdd:TIGR03269 280 IKVRNVSKRYiSVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKpgpdg 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 585 ---VRKSLGLCPQDDILFHHLTVSEHLYFYCVIKgVPPEIQSKEINKMLISFGLIEKH-----DALAKSLSGGMKRKLSI 656
Cdd:TIGR03269 360 rgrAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE-LPDELARMKAVITLKMVGFDEEKaeeilDKYPDELSEGERHRVAL 438
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 657 IIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKE--NRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:TIGR03269 439 AQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREemEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
509-720 |
2.13e-23 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 101.48 E-value: 2.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 509 AGIRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydiskdmVQVRKS 588
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDG-------VPVTGP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 589 ---LGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:COG4525 75 gadRGVVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPR 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 666 VVILDEPTSGMDPvsrrFTWDVLQ------KHKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:COG4525 155 FLLMDEPFGALDA----LTREQMQellldvWQRTGKGVFLITHSVEEALFLATRLVVMSPG 211
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
529-721 |
2.79e-23 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 100.38 E-value: 2.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTVSEH 607
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDiSRKSLRSMIGVVLQDTFLFSG-TIMEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 lyfycvIKGVPPEIQSKEINKMLISFG---LIEK-----HDAL---AKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:cd03254 97 ------IRLGRPNATDEEVIEAAKEAGahdFIMKlpngyDTVLgenGGNLSQGERQLLAIARAMLRDPKILILDEATSNI 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 677 DPVSRRFTWDVLQKHKENRTVLLTTHHM------DEADVLgDRIAIMAKGT 721
Cdd:cd03254 171 DTETEKLIQEALEKLMKGRTSIIIAHRLstiknaDKILVL-DDGKIIEEGT 220
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1348-1564 |
3.30e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 101.31 E-value: 3.30e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPV-VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT---KNILKVRSKI 1423
Cdd:PRK13639 1 ILETRDLKYSYPDgTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKydkKSLLEVRKTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1424 GYCPQF-DALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIF 1502
Cdd:PRK13639 81 GIVFQNpDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1503 LDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQ 1564
Cdd:PRK13639 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
520-730 |
3.53e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 100.98 E-value: 3.53e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 520 FTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS-KDMVQVRKSLGLCPQD-DI 597
Cdd:PRK13648 15 FQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITdDNFEKLRKHIGIVFQNpDN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 598 LFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMD 677
Cdd:PRK13648 95 QFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 678 PVSRRFTWDVLQKHKENR--TVLLTTHHMDEAdVLGDRIAIMAKGTLQCCGS--TIF 730
Cdd:PRK13648 175 PDARQNLLDLVRKVKSEHniTIISITHDLSEA-MEADHVIVMNKGTVYKEGTptEIF 230
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
511-720 |
3.56e-23 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 100.59 E-value: 3.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQnmTVLAVQDLSLNlyEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKD--------- 581
Cdd:PRK11264 4 IEVKNLVKKFHGQ--TVLHGIDLEVK--PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTArslsqqkgl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 582 MVQVRKSLGLCPQDDILFHHLTVSEHLYFYCVI-KGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIAL 660
Cdd:PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIvKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 661 IGGSKVVILDEPTSGMDPvsrRFTWDVL----QKHKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11264 160 AMRPEVILFDEPTSALDP---ELVGEVLntirQLAQEKRTMVIVTHEMSFARDVADRAIFMDQG 220
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
1350-1558 |
3.88e-23 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 99.25 E-value: 3.88e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFS-KPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKnilKVRSK-IGYCP 1427
Cdd:cd03226 1 RIENISFSyKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKsIGYVM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1428 QfDalLDYM----TAREIMIMYARLWGIPETKINNYVKKsmeaLNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFL 1503
Cdd:cd03226 78 Q-D--VDYQlftdSVREELLLGLKELDAGNEQAETVLKD----LDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIF 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1504 DEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:cd03226 151 DEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
1364-1570 |
4.01e-23 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 100.10 E-value: 4.01e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITkNILKVRSKIGYCPQFDALLDYMTAREiMI 1443
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT-NLPPEKRDISYVPQNYALFPHMTVYK-NI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1444 MYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAV 1522
Cdd:cd03299 93 AYGlKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 1523 TRTR-ESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQ----HLKNKF 1570
Cdd:cd03299 173 KKIRkEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEevfkKPKNEF 225
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
1361-1561 |
4.05e-23 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 99.65 E-value: 4.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTG---EEVASSGDVFVERLSITKNilKVRSKIGYCPQFDALLDYMT 1437
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGrveGGGTTSGQILFNGQPRKPD--QFQKCVAYVRQDDILLPGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1438 AREIMIMYARLWGiPETKINNYVKK-----SMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDP 1512
Cdd:cd03234 98 VRETLTYTAILRL-PRKSSDAIRKKrvedvLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1513 VARRLLWNAVTRTRESGKAIIITSHS-MEECDALCTKLAIMVKGKFVCLG 1561
Cdd:cd03234 177 FTALNLVSTLSQLARRNRIVILTIHQpRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
1346-1561 |
7.47e-23 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 98.48 E-value: 7.47e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1346 VLIKELIKVYFSKPvvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSkIGY 1425
Cdd:cd03301 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRD-IAM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDE 1505
Cdd:cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 1506 PSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLG 1561
Cdd:cd03301 157 PLSNLDAKLRVQMRAELKRlQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
529-703 |
1.48e-22 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 103.98 E-value: 1.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI-SKDMVQVRKSLGLCPQDDILFHHlTVSEH 607
Cdd:TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVsSLDQDEVRRRVSVCAQDAHLFDT-TVREN 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFYCvikgvpPEIQSKEINKMLISFGLIEKHDAL-----------AKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:TIGR02868 429 LRLAR------PDATDEELWAALERVGLADWLRALpdgldtvlgegGARLSGGERQRLALARALLADAPILLLDEPTEHL 502
|
170 180
....*....|....*....|....*..
gi 1387244451 677 DPVSRRFTWDVLQKHKENRTVLLTTHH 703
Cdd:TIGR02868 503 DAETADELLEDLLAALSGRTVVLITHH 529
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
529-733 |
2.17e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 99.15 E-value: 2.17e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI---SKDMVQVRKSLGLCPQD-DILFHHLTV 604
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdysRKGLMKLRESVGMVFQDpDNQLFSASV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFT 684
Cdd:PRK13636 101 YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 685 WDVLQKHKE--NRTVLLTTHHMDEADVLGDRIAIMAKGT--LQCCGSTIFLKK 733
Cdd:PRK13636 181 MKLLVEMQKelGLTIIIATHDIDIVPLYCDNVFVMKEGRviLQGNPKEVFAEK 233
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
511-722 |
2.27e-22 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 95.84 E-value: 2.27e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLykEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:cd03247 1 LSINNV--SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLIS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFhhltvSEHLYfycvikgvppeiqskeinkmlisfgliekhDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03247 79 VLNQRPYLF-----DTTLR------------------------------NNLGRRFSGGERQRLALARILLQDAPIVLLD 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADVLgDRIAIMAKGTL 722
Cdd:cd03247 124 EPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHM-DKILFLENGKI 174
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1363-1575 |
3.48e-22 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 97.41 E-value: 3.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRsKIGYCPQFDALLDYMTAREIM 1442
Cdd:cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQER-NVGFVFQHYALFRHMTVFDNV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1443 I----MYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLL 1518
Cdd:cd03296 96 AfglrVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1519 WNAVTRTR-ESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNKFGNVYI 1575
Cdd:cd03296 176 RRWLRRLHdELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFV 233
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
511-717 |
6.00e-22 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 98.59 E-value: 6.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRP---TSGKVYISGYDIS----KDMV 583
Cdd:COG0444 2 LEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLklseKELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 584 QVR-KSLGLCPQD----------------DILFHHltvsehlyfycviKGVPPEIQSKEINKMLISFGLIEKHDALAK-- 644
Cdd:COG0444 82 KIRgREIQMIFQDpmtslnpvmtvgdqiaEPLRIH-------------GGLSKAEARERAIELLERVGLPDPERRLDRyp 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 645 -SLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENR--TVLLTTHHMDEADVLGDRIAIM 717
Cdd:COG0444 149 hELSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELglAILFITHDLGVVAEIADRVAVM 224
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1343-1566 |
7.08e-22 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 99.02 E-value: 7.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1343 NSIVLIKELIKvYFSKPVVlaVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSk 1422
Cdd:PRK11432 4 KNFVVLKNITK-RFGSNTV--IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1423 IGYCPQFDALLDYMTAREiMIMYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVI 1501
Cdd:PRK11432 80 ICMVFQSYALFPHMSLGE-NVGYGlKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1502 FLDEPSTGMDPVARRllwNAVTRTRESGKAIIITS----HSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK11432 159 LFDEPLSNLDANLRR---SMREKIRELQQQFNITSlyvtHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1362-1583 |
7.36e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 97.47 E-value: 7.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1362 LAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERL--SITKNILKVRSKIGYCPQF-DALLDYMTA 1438
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLdtSDEENLWDIRNKAGMVFQNpDNQIVATIV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1439 REIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLL 1518
Cdd:PRK13633 104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREV 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1519 WNAVTR-TRESGKAIIITSHSMEECdALCTKLAIMVKGKFVCLGSPqhlKNKFGNVYILKvKINID 1583
Cdd:PRK13633 184 VNTIKElNKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTP---KEIFKEVEMMK-KIGLD 244
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1326-1575 |
7.86e-22 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 100.11 E-value: 7.86e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1326 DVQNERNRILDNPQESLNSIV--LIKELI--KVYFSkpvvLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVAS 1401
Cdd:PRK10070 6 EIKNLYKIFGEHPQRAFKYIEqgLSKEQIleKTGLS----LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1402 SGDVFVERLSITK----NILKVR-SKIGYCPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKY 1476
Cdd:PRK10070 82 RGQVLIDGVDIAKisdaELREVRrKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1477 IYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTR-ESGKAIIITSHSMEECDALCTKLAIMVKG 1555
Cdd:PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQaKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241
|
250 260
....*....|....*....|
gi 1387244451 1556 KFVCLGSPQHLKNKFGNVYI 1575
Cdd:PRK10070 242 EVVQVGTPDEILNNPANDYV 261
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1361-1570 |
1.21e-21 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 98.63 E-value: 1.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERlsitKNILKV---RSKIGYCPQFDALLDYMT 1437
Cdd:COG3842 18 VTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDG----RDVTGLppeKRNVGMVFQDYALFPHLT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1438 AREImIMYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVAR- 1515
Cdd:COG3842 94 VAEN-VAFGlRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDAKLRe 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1516 -------RLLwnavtrtRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL----KNKF 1570
Cdd:COG3842 173 emreelrRLQ-------RELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEIyerpATRF 231
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
529-731 |
1.47e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 96.00 E-value: 1.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILT--GLYRP---TSGKVYISGYDI---SKDMVQVRKSLGLCPQDDILFH 600
Cdd:PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDLNPevtITGSIVYNGHNIyspRTDTVDLRKEIGMVFQQPNPFP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 601 hLTVSEHLYFYCVIKGVP-PEIQSKEINKMLISFGLIEK-----HDAlAKSLSGGMKRKLSIIIALIGGSKVVILDEPTS 674
Cdd:PRK14239 100 -MSIYENVVYGLRLKGIKdKQVLDEAVEKSLKGASIWDEvkdrlHDS-ALGLSGGQQQRVCIARVLATSPKIILLDEPTS 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 675 GMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST--IFL 731
Cdd:PRK14239 178 ALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTkqMFM 236
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
511-722 |
1.94e-21 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 94.56 E-value: 1.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMtvlAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMVQVR 586
Cdd:PRK10908 2 IRFEHVSKAYLGGRQ---ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRlknrEVPFLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKV 666
Cdd:PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 667 VILDEPTSGMDPVsrrFTWDVLQKHKE-NR---TVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:PRK10908 159 LLADEPTGNLDDA---LSEGILRLFEEfNRvgvTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
511-720 |
2.14e-21 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 98.37 E-value: 2.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNmtvlAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISkDMVQVRKSLG 590
Cdd:PRK11607 20 LEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS-HVPPYQRPIN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVPP-EIQSKeINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVIL 669
Cdd:PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKaEIASR-VNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 670 DEPTSGMDPVSR-RFTWDVLQ-KHKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11607 174 DEPMGALDKKLRdRMQLEVVDiLERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
525-732 |
2.41e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 96.03 E-value: 2.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 525 MTVLAVQDLSlNLYEGQITVL---------------LGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMV-QVRKS 588
Cdd:PRK13652 1 MHLIETRDLC-YSYSGSKEALnninfiaprnsriavIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIrEVRKF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 589 LGLCPQ--DDILFHHlTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKV 666
Cdd:PRK13652 80 VGLVFQnpDDQIFSP-TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 667 VILDEPTSGMDPVSRRFTWDVLQKHKEN--RTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST--IFLK 732
Cdd:PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETygMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVeeIFLQ 228
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
518-710 |
2.48e-21 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 94.09 E-value: 2.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 518 KEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRP---TSGKVYISGYDISKDMVQVRKsLGLCPQ 594
Cdd:COG4136 5 ENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNGRRLTALPAEQRR-IGILFQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 595 DDILFHHLTVSEHLYFycvikGVPPEIQSKE----INKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:COG4136 84 DDLLFPHLSVGENLAF-----ALPPTIGRAQrrarVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLD 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1387244451 671 EPTSGMDPV----SRRFTWDvlQKHKENRTVLLTTHhmDEADVL 710
Cdd:COG4136 159 EPFSKLDAAlraqFREFVFE--QIRQRGIPALLVTH--DEEDAP 198
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1337-1580 |
2.79e-21 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 97.98 E-value: 2.79e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1337 NPQESLNSIVLIKELIKVYFSKPvvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITkNI 1416
Cdd:PRK11607 11 KTRKALTPLLEIRNLTKSFDGQH---AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS-HV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1417 LKVRSKIGYCPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMG 1496
Cdd:PRK11607 87 PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1497 KPSVIFLDEPSTGMDPVAR-RLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSP----QHLKNKFG 1571
Cdd:PRK11607 167 RPKLLLLDEPMGALDKKLRdRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPeeiyEHPTTRYS 246
|
....*....
gi 1387244451 1572 NVYILKVKI 1580
Cdd:PRK11607 247 AEFIGSVNV 255
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
526-726 |
4.07e-21 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 93.75 E-value: 4.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 526 TVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydiskdmvQVRKSLGLcpqdDILFH-HLTV 604
Cdd:cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG--------RVSSLLGL----GGGFNpELTG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHLYFYCVIKGV-PPEIQSK--EInkmlISFGLIEKH-DALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS 680
Cdd:cd03220 102 RENIYLNGRLLGLsRKEIDEKidEI----IEFSELGDFiDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1387244451 681 RRFTWDVLQKHKEN-RTVLLTTHHMDEADVLGDRIAIMAKGTLQCCG 726
Cdd:cd03220 178 QEKCQRRLRELLKQgKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
523-720 |
6.21e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 94.80 E-value: 6.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 523 QNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMV-QVRKSLGLCPQD-DILFH 600
Cdd:PRK13650 16 EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVwDIRHKIGMVFQNpDNQFV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 601 HLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS 680
Cdd:PRK13650 96 GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1387244451 681 RRFTWDVLQKHKE--NRTVLLTTHHMDEAdVLGDRIAIMAKG 720
Cdd:PRK13650 176 RLELIKTIKGIRDdyQMTVISITHDLDEV-ALSDRVLVMKNG 216
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
532-722 |
6.34e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 94.90 E-value: 6.34e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 532 DLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI-----SKDMVQVRKSLGLCPQ--DDILFHHlTV 604
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItpetgNKNLKKLRKKVSLVFQfpEAQLFEN-TV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEkhDALAKS---LSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR 681
Cdd:PRK13641 104 LKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE--DLISKSpfeLSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1387244451 682 RFTWDVLQKH-KENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:PRK13641 182 KEMMQLFKDYqKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
529-720 |
7.32e-21 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 99.08 E-value: 7.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFhHLTVSEh 607
Cdd:COG1132 355 VLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDlTLESLRRQIGVVPQDTFLF-SGTIRE- 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 lyfycvikgvppeiqskeiNkmlISFGLIEKHD-----ALAK-----------------------SLSGGMKRKLSIIIA 659
Cdd:COG1132 433 -------------------N---IRYGRPDATDeeveeAAKAaqahefiealpdgydtvvgergvNLSGGQRQRIAIARA 490
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 660 LIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTH------HMdeadvlgDRIAIMAKG 720
Cdd:COG1132 491 LLKDPPILILDEATSALDTETEALIQEALERLMKGRTTIVIAHrlstirNA-------DRILVLDDG 550
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
529-727 |
7.42e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 94.80 E-value: 7.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS-----KDMVQVRKSLGLCPQ--DDILFHH 601
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSstskqKEIKPVRKKVGVVFQfpESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 602 lTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKH-DALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS 680
Cdd:PRK13643 101 -TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFwEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1387244451 681 RRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:PRK13643 180 RIEMMQLFESiHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
520-722 |
1.07e-20 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 91.34 E-value: 1.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 520 FTLQNMTV-LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ--VRKSLGLCPQD- 595
Cdd:cd03215 5 LEVRGLSVkGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRdaIRAGIAYVPEDr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 596 --DILFHHLTVSEHLyfycvikgvppeiqskeinkmlisfgliekhdALAKSLSGGMKRKLSIIIALIGGSKVVILDEPT 673
Cdd:cd03215 85 krEGLVLDLSVAENI--------------------------------ALSSLLSGGNQQKVVLARWLARDPRVLILDEPT 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1387244451 674 SGMDPVSRRFTWDVLQKHK-ENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:cd03215 133 RGVDVGAKAEIYRLIRELAdAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
511-728 |
1.29e-20 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 92.84 E-value: 1.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQN------------------MTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVY 572
Cdd:COG1134 5 IEVENVSKSYRLYHepsrslkelllrrrrtrrEEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 573 ISGYdISkdmvqvrkSL-----GlcpqddilFH-HLTVSEHLYFYCVIKGVPPeiqsKEINKML---ISFGLIEKH-DAL 642
Cdd:COG1134 85 VNGR-VS--------ALlelgaG--------FHpELTGRENIYLNGRLLGLSR----KEIDEKFdeiVEFAELGDFiDQP 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 643 AKSLSGGMKRKL--SIIIALigGSKVVILDEPTSGMDPV-----SRRFTwdvlQKHKENRTVLLTTHHMDEADVLGDRIA 715
Cdd:COG1134 144 VKTYSSGMRARLafAVATAV--DPDILLVDEVLAVGDAAfqkkcLARIR----ELRESGRTVIFVSHSMGAVRRLCDRAI 217
|
250
....*....|...
gi 1387244451 716 IMAKGTLQCCGST 728
Cdd:COG1134 218 WLEKGRLVMDGDP 230
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1345-1552 |
1.34e-20 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 93.23 E-value: 1.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1345 IVLIKELIKVYFSKP-VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERlsitKNILKVRSKI 1423
Cdd:COG1116 7 ALELRGVSKRFPTGGgGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDG----KPVTGPGPDR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1424 GYCPQFDALLDYMTAREiMIMYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIF 1502
Cdd:COG1116 83 GVVFQEPALLPWLTVLD-NVALGlELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1503 LDEPSTGMDPVARRLLWNAVTRT-RESGKAIIITSHSMEECDALCTKLAIM 1552
Cdd:COG1116 162 MDEPFGALDALTRERLQDELLRLwQETGKTVLFVTHDVDEAVFLADRVVVL 212
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1350-1540 |
1.45e-20 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 92.04 E-value: 1.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFS-KPVVLAVRNISVAIQKQE-CFgLLGLNGAGKTTTFEILTGEEVASSGDVFVE-----RLSiTKNILKVRSK 1422
Cdd:COG2884 3 RFENVSKRyPGGREALSDVSLEIEKGEfVF-LTGPSGAGKSTLLKLLYGEERPTSGQVLVNgqdlsRLK-RREIPYLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1423 IGYCPQfDA-LLDYMTAREiMIMYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSV 1500
Cdd:COG2884 81 IGVVFQ-DFrLLPDRTVYE-NVALPlRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPEL 158
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 1501 IFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSME 1540
Cdd:COG2884 159 LLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLE 198
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
511-726 |
1.50e-20 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 97.55 E-value: 1.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK--DMVQVRKS 588
Cdd:PRK09700 6 ISMAGIGKSFG----PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKldHKLAAQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 589 LGLCPQDDILFHHLTVSEHLYF-------YCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALI 661
Cdd:PRK09700 82 IGIIYQELSVIDELTVLENLYIgrhltkkVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 662 GGSKVVILDEPTSGMDPVSRRFTWDVL-QKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCG 726
Cdd:PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMnQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1348-1565 |
2.06e-20 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 94.37 E-value: 2.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKP-VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT----KNILKVRSK 1422
Cdd:COG1135 4 LENLSKTFPTKGgPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTalseRELRAARRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1423 IGYCPQFDALLDYMTAREiMIMYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVI 1501
Cdd:COG1135 84 IGMIFQHFNLLSSRTVAE-NVALPlEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1502 FLDEPSTGMDPvarrllwnAVTRT---------RESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGS-------PQH 1565
Cdd:COG1135 163 LCDEATSALDP--------ETTRSildllkdinRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPvldvfanPQS 234
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
530-722 |
2.63e-20 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 94.40 E-value: 2.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKslgLCP--QDDILFHHLTVSEH 607
Cdd:PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD---ICMvfQSYALFPHMSLGEN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDV 687
Cdd:PRK11432 99 VGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK 178
|
170 180 190
....*....|....*....|....*....|....*...
gi 1387244451 688 ---LQKhKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:PRK11432 179 ireLQQ-QFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
533-703 |
3.32e-20 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 90.50 E-value: 3.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 533 LSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLCPQDDILFHHLTVSEHLYFYC 612
Cdd:TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKPELSALENLHFWA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 613 VIKGVppeiQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS-RRFTWDVLQKH 691
Cdd:TIGR01189 99 AIHGG----AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGvALLAGLLRAHL 174
|
170
....*....|..
gi 1387244451 692 KENRTVLLTTHH 703
Cdd:TIGR01189 175 ARGGIVLLTTHQ 186
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
997-1225 |
4.26e-20 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 93.61 E-value: 4.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 997 GNENTVNFWFNDEAYHSSPLSLAVLDNVIFM---SLSGPDASITVVNKPQPVRSASSGPKYSMMTGTQIALNLYFGVSIL 1073
Cdd:pfam12698 96 GESATVTVYINSSNLLVSKLILNALQSLLQQlnaSALVLLLEALSTSAPIPVESTPLFNPQSGYAYYLVGLILMIIILIG 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1074 VSGFCLLTVNERVTKAKHIQFLSGVYALNFWLSALLWDFLIFFISCCLLLVVFtfsdLKILVTGYRLLDTLFIFMVFGWA 1153
Cdd:pfam12698 176 AAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGDFLVGLLQLLIILLLL----FGIGIPFGNLGLLLLLFLLYGLA 251
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1154 VIPFMYLISFLFSSHTSAYAKLVIFNYCAGIFGAVAdVTISSIQgeeaaskSLLLNAMMVLPIHNFGMSISR 1225
Cdd:pfam12698 252 YIALGYLLGSLFKNSEDAQSIIGIVILLLSGFFGGL-FPLEDPP-------SFLQWIFSIIPFFSPIDGLLR 315
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1348-1558 |
5.32e-20 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 88.64 E-value: 5.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYfskPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERLSITknilkvrskigy 1425
Cdd:cd03216 3 LRGITKRF---GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVdgKEVSFA------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 cpqfdalldymTAREimimyARLWGIpetkinnyvkkSMealnlesyadkyIYTYSGGNKRRLSTAIALMGKPSVIFLDE 1505
Cdd:cd03216 68 -----------SPRD-----ARRAGI-----------AM------------VYQLSVGERQMVEIARALARNARLLILDE 108
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 1506 PSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:cd03216 109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
530-722 |
6.21e-20 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 88.81 E-value: 6.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTVSEHL 608
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVGYLPQDDELFSG-SIAENI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 609 yfycvikgvppeiqskeinkmlisfgliekhdalaksLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVL 688
Cdd:cd03246 97 -------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
|
170 180 190
....*....|....*....|....*....|....*
gi 1387244451 689 QKHKE-NRTVLLTTHHMdEADVLGDRIAIMAKGTL 722
Cdd:cd03246 140 AALKAaGATRIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
1363-1586 |
9.69e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 91.61 E-value: 9.69e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKV------RSKIGYCPQFDALLDYM 1436
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIkevkrlRKEIGLVFQFPEYQLFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TAREIMIMYARLwGIPETKINNYvKKSMEALNL----ESYADKYIYTYSGGNKRRLSTA--IALMGKPSVifLDEPSTGM 1510
Cdd:PRK13645 106 ETIEKDIAFGPV-NLGENKQEAY-KKVPELLKLvqlpEDYVKRSPFELSGGQKRRVALAgiIAMDGNTLV--LDEPTGGL 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 1511 DPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLknkFGNVYILKvKINIDENK 1586
Cdd:PRK13645 182 DPKGEEDFINLFERlNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI---FSNQELLT-KIEIDPPK 254
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
528-727 |
1.26e-19 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 89.48 E-value: 1.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 528 LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTVSE 606
Cdd:cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKiGLHDLRSRISIIPQDPVLFSG-TIRS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 607 HLYFYCvikgvppEIQSKEINKMLISFGLIEKHDALAKSL-----------SGGMKRKLSIIIALIGGSKVVILDEPTSG 675
Cdd:cd03244 97 NLDPFG-------EYSDEELWQALERVGLKEFVESLPGGLdtvveeggenlSVGQRQLLCLARALLRKSKILVLDEATAS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 676 MDPVSRRFTWDVLQKHKENRTVLLTTHHMDE-ADVlgDRIAIMAKGTLQCCGS 727
Cdd:cd03244 170 VDPETDALIQKTIREAFKDCTVLTIAHRLDTiIDS--DRILVLDKGRVVEFDS 220
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
528-727 |
1.31e-19 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 89.85 E-value: 1.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 528 LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTVSE 606
Cdd:cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQVGVVLQENVLFNR-SIRD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 607 HLyfyCVIKGVPPEIQSKEINKMLISFGLI----EKHDAL----AKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDP 678
Cdd:cd03252 95 NI---ALADPGMSMERVIEAAKLAGAHDFIselpEGYDTIvgeqGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDY 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1387244451 679 VSRRFTWDVLQKHKENRTVLLTTHHMdEADVLGDRIAIMAKGTLQCCGS 727
Cdd:cd03252 172 ESEHAIMRNMHDICAGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGS 219
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1352-1506 |
1.40e-19 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 94.36 E-value: 1.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1352 IKVYFSKPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVfverlSITKNIlkvrsKIGYCPQFDA 1431
Cdd:COG0488 4 LSKSFGGRPLL--DDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEV-----SIPKGL-----RIGYLPQEPP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1432 LLDYMTAREIMIM-YARLWGI-------------PETKINNY------------------VKKSMEALNL-ESYADKYIY 1478
Cdd:COG0488 72 LDDDLTVLDTVLDgDAELRALeaeleeleaklaePDEDLERLaelqeefealggweaearAEEILSGLGFpEEDLDRPVS 151
|
170 180
....*....|....*....|....*...
gi 1387244451 1479 TYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:COG0488 152 ELSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
527-708 |
1.51e-19 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 95.58 E-value: 1.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 527 VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydisKDMVQVRKSLGLCPQddI--------- 597
Cdd:NF033858 14 TVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLG----GDMADARHRRAVCPR--Iaympqglgk 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 598 -LFHHLTVSEHLYFYCVIKGvppeiQSKE-----INKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDE 671
Cdd:NF033858 88 nLYPTLSVFENLDFFGRLFG-----QDAAerrrrIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDE 162
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 672 PTSGMDPVSRRFTWDVLQKHKENR---TVLLTTHHMDEAD 708
Cdd:NF033858 163 PTTGVDPLSRRQFWELIDRIRAERpgmSVLVATAYMEEAE 202
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
533-722 |
1.57e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 90.54 E-value: 1.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 533 LSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMV-QVRKSLGLCPQD-DILFHHLTVSEHLYF 610
Cdd:PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVwNLRRKIGMVFQNpDNQFVGATVEDDVAF 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 611 YCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSI--IIALigGSKVVILDEPTSGMDPVSRRFTWDVL 688
Cdd:PRK13642 106 GMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVagIIAL--RPEIIILDESTSMLDPTGRQEIMRVI 183
|
170 180 190
....*....|....*....|....*....|....*.
gi 1387244451 689 Q--KHKENRTVLLTTHHMDEAdVLGDRIAIMAKGTL 722
Cdd:PRK13642 184 HeiKEKYQLTVLSITHDLDEA-ASSDRILVMKAGEI 218
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
529-722 |
1.70e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 90.43 E-value: 1.70e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS--KDMVQVRKSLGLCPQD-DILFHHLTVS 605
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGdfSKLQGIRKLVGIVFQNpETQFVGRTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 606 EHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTW 685
Cdd:PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
|
170 180 190
....*....|....*....|....*....|....*...
gi 1387244451 686 DVLQK-HKENRTVLLTTHHMDEADVlGDRIAIMAKGTL 722
Cdd:PRK13644 177 ERIKKlHEKGKTIVYITHNLEELHD-ADRIIVMDRGKI 213
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
511-727 |
1.75e-19 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 92.10 E-value: 1.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLqnmtvlavqDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISG---YDISK--DMVQV 585
Cdd:TIGR02142 3 ARFSKRLGDFSL---------DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGrtlFDSRKgiFLPPE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 586 RKSLGLCPQDDILFHHLTVSEHLyFYCVIKGVPPE--IQSKEINKMLisfGLIEKHDALAKSLSGGMKRKLSIIIALIGG 663
Cdd:TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNL-RYGMKRARPSErrISFERVIELL---GIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 664 SKVVILDEPTSGMDPVSRRFTWDVLQK-HKENRT-VLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERlHAEFGIpILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
530-739 |
2.01e-19 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 88.35 E-value: 2.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGL--YRPTSGKVYISGYDIsKDM---VQVRKSLGLCPQDdilfhhltv 604
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDI-TDLppeERARLGIFLAFQY--------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 sehlyfycvikgvPPEIQSKEINKMLISfgliekhdaLAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFT 684
Cdd:cd03217 86 -------------PPEIPGVKNADFLRY---------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 685 WDVLQK-HKENRTVLLTTHHMDEAD-VLGDRIAIMAKGTLQCCGSTIFLKKVYGVGY 739
Cdd:cd03217 144 AEVINKlREEGKSVLIITHYQRLLDyIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
511-720 |
2.08e-19 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 89.21 E-value: 2.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLykEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSL 589
Cdd:cd03251 1 VEFKNV--TFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQDDILFHHlTVSEHLYFycvikGVpPEIQSKEINKMLisfGLIEKHDALAK--------------SLSGGMKRKLS 655
Cdd:cd03251 79 GLVSQDVFLFND-TVAENIAY-----GR-PGATREEVEEAA---RAANAHEFIMElpegydtvigergvKLSGGQRQRIA 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 656 IIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHM---DEAdvlgDRIAIMAKG 720
Cdd:cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLstiENA----DRIVVLEDG 212
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1346-1570 |
2.32e-19 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 91.67 E-value: 2.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1346 VLIKELIKVYFSKPvvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVErlsiTKNILKVRSK--- 1422
Cdd:COG3839 4 LELENVSKSYGGVE---ALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIG----GRDVTDLPPKdrn 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1423 IGYCPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIF 1502
Cdd:COG3839 77 IAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1503 LDEPSTGMDPVARrllwnAVTRT------RESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL----KNKF 1570
Cdd:COG3839 157 LDEPLSNLDAKLR-----VEMRAeikrlhRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEELydrpANLF 229
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
1437-1664 |
2.37e-19 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 91.72 E-value: 2.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARR 1516
Cdd:NF000106 102 SGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRN 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1517 LLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNKFGNvYILKVKINIDENKDKLehFKTFV 1596
Cdd:NF000106 182 EVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVGG-RTLQIRPAHAAELDRM--VGAIA 258
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1597 ETAFPG--SELKDENRGIINYYVPSkNNSWGKMFGILekAKEEFNLEDYSISQITLEQVFLTFAGSQNPE 1664
Cdd:NF000106 259 QAGLDGiaGATADHEDGVVNVPIVS-DEQLSAVVGML--GERGFTISGHQHPSAQL*EVFLAITGQKTSE 325
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1342-1569 |
2.82e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 89.79 E-value: 2.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1342 LNSIVLIKELikVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT-KNILKVR 1420
Cdd:PRK13647 1 MDNIIEVEDL--HFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNaENEKWVR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1421 SKIGYCPQF-DALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPS 1499
Cdd:PRK13647 79 SKVGLVFQDpDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1500 VIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNK 1569
Cdd:PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
1366-1537 |
3.32e-19 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 87.30 E-value: 3.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1366 NISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVAS--SGDVFVERLSITKNILKVrskIGYCPQFDALLDYMTAREIMI 1443
Cdd:cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGviTGEILINGRPLDKNFQRS---TGYVEQQDVHSPNLTVREALR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1444 MYARLWGipetkinnyvkksmeaLNLEsyadkyiytysggNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVT 1523
Cdd:cd03232 102 FSALLRG----------------LSVE-------------QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK 152
|
170
....*....|....
gi 1387244451 1524 RTRESGKAIIITSH 1537
Cdd:cd03232 153 KLADSGQAILCTIH 166
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
524-742 |
3.41e-19 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 88.75 E-value: 3.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 524 NMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ-VRKSLGLCPQDDILFHhL 602
Cdd:cd03249 15 DVPIL--KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRwLRSQIGLVSQEPVLFD-G 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 603 TVSEHLYFycvikGVPPEIQSKEIN---KMLI-SF--GLIEKHDAL----AKSLSGGMKRKLSIIIALIGGSKVVILDEP 672
Cdd:cd03249 92 TIAENIRY-----GKPDATDEEVEEaakKANIhDFimSLPDGYDTLvgerGSQLSGGQKQRIAIARALLRNPKILLLDEA 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 673 TSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMdeADVLG-DRIAIMAKGTLQCCGSTIFLKKVYGVGYHLI 742
Cdd:cd03249 167 TSALDAESEKLVQEALDRAMKGRTTIVIAHRL--STIRNaDLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1321-1549 |
3.73e-19 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 93.21 E-value: 3.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1321 ESEDEDVQNERNRI-LDNPQESLNSIVLIKELIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEV 1399
Cdd:COG0488 290 EREEPPRRDKTVEIrFPPPERLGKKVLELEGLSKSYGDKTLL---DDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1400 ASSGDVfverlSITKNIlkvrsKIGYCPQFDALLDY-MTAREIMIMYARlwGIPETKINNYvkksMEALNL-ESYADKYI 1477
Cdd:COG0488 367 PDSGTV-----KLGETV-----KIGYFDQHQEELDPdKTVLDELRDGAP--GGTEQEVRGY----LGRFLFsGDDAFKPV 430
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1478 YTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTreSGkAIIITSHSMEECDALCTKL 1549
Cdd:COG0488 431 GVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEEALDDF--PG-TVLLVSHDRYFLDRVATRI 499
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
511-727 |
4.00e-19 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 93.35 E-value: 4.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLykEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSL 589
Cdd:PRK11160 339 LTLNNV--SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADySEAALRQAI 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQDDILFHHlTVSEHLYFYCvikgvpPEIQSKEINKMLISFGL---IEKHDAL-------AKSLSGGMKRKLSIIIA 659
Cdd:PRK11160 417 SVVSQRVHLFSA-TLRDNLLLAA------PNASDEALIEVLQQVGLeklLEDDKGLnawlgegGRQLSGGEQRRLGIARA 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 660 LIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTH------HMdeadvlgDRIAIMAKGTLQCCGS 727
Cdd:PRK11160 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHrltgleQF-------DRICVMDNGQIIEQGT 556
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
514-722 |
5.25e-19 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 87.91 E-value: 5.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 514 QHLYKEFTLQNMT--------VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQ 584
Cdd:cd03248 6 DHLKGIVKFQNVTfayptrpdTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQyEHKY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 585 VRKSLGLCPQDDILFHHlTVSEHLYFYcvIKGVPPEIQSKEINK-------MLISFGLIEKHDALAKSLSGGMKRKLSII 657
Cdd:cd03248 86 LHSKVSLVGQEPVLFAR-SLQDNIAYG--LQSCSFECVKEAAQKahahsfiSELASGYDTEVGEKGSQLSGGQKQRVAIA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 658 IALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADvLGDRIAIMAKGTL 722
Cdd:cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
531-703 |
5.41e-19 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 87.17 E-value: 5.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 531 QDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKdmvqVRKSLglcpQDDILF--HH------L 602
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRR----QRDEY----HQDLLYlgHQpgikteL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 603 TVSEHLYFYCVIKGvppEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKlsiiIAL----IGGSKVVILDEP-----T 673
Cdd:PRK13538 90 TALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRR----VALarlwLTRAPLWILDEPftaidK 162
|
170 180 190
....*....|....*....|....*....|.
gi 1387244451 674 SGMDPVSRRFtwdvlQKHKENR-TVLLTTHH 703
Cdd:PRK13538 163 QGVARLEALL-----AQHAEQGgMVILTTHQ 188
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
511-727 |
5.88e-19 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 90.53 E-value: 5.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKsLG 590
Cdd:PRK10851 3 IEIANIKKSFG--RTQVL--NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK-VG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYcvIKGVP------PEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGS 664
Cdd:PRK10851 78 FVFQHYALFRHMTVFDNIAFG--LTVLPrrerpnAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 665 KVVILDEPTSGMDPVSRR--FTWdVLQKHKENR-TVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:PRK10851 156 QILLLDEPFGALDAQVRKelRRW-LRQLHEELKfTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
1351-1556 |
6.40e-19 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 87.59 E-value: 6.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1351 LIKVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERlsitknilKVRSKIGYCPQFD 1430
Cdd:cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG--------RVSSLLGLGGGFN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1431 ALLdymTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEP-STG 1509
Cdd:cd03220 97 PEL---TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVlAVG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1510 ----MDPVARRLlwnavTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:cd03220 174 daafQEKCQRRL-----RELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
533-703 |
7.35e-19 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 86.78 E-value: 7.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 533 LSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLCPQDDILFHHLTVSEHLYFYC 612
Cdd:cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWH 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 613 VIKGvppeiqSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS-RRFTWDVLQKH 691
Cdd:cd03231 99 ADHS------DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGvARFAEAMAGHC 172
|
170
....*....|..
gi 1387244451 692 KENRTVLLTTHH 703
Cdd:cd03231 173 ARGGMVVLTTHQ 184
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
1348-1539 |
8.21e-19 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 86.81 E-value: 8.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKvYFSKPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT---KNILKVRSKIG 1424
Cdd:cd03262 3 IKNLHK-SFGDFHVL--KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTddkKNINELRQKVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1425 YCPQFDALLDYMTARE-IMIMYARLWGIPETKInnyVKKSMEALN---LESYADKYIYTYSGGNKRRLSTAIALMGKPSV 1500
Cdd:cd03262 80 MVFQQFNLFPHLTVLEnITLAPIKVKGMSKAEA---EERALELLEkvgLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156
|
170 180 190
....*....|....*....|....*....|....*....
gi 1387244451 1501 IFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSM 1539
Cdd:cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1363-1566 |
8.27e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 88.75 E-value: 8.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSI---TKNILKVRSKIGYCPQF-DALLDYMTA 1438
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdysRKGLMKLRESVGMVFQDpDNQLFSASV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1439 REIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLL 1518
Cdd:PRK13636 101 YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1387244451 1519 WNAVTRT-RESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK13636 181 MKLLVEMqKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
511-727 |
9.34e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 89.14 E-value: 9.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEF-TLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYI----SGYDIS------ 579
Cdd:PRK13631 22 LRVKNLYCVFdEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyIGDKKNnhelit 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 580 -------KDMVQVRKSLGLCPQ--DDILFHHlTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLieKHDALAKS---LS 647
Cdd:PRK13631 102 npyskkiKNFKELRRRVSMVFQfpEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGL--DDSYLERSpfgLS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 648 GGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWD-VLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCG 726
Cdd:PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQlILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
.
gi 1387244451 727 S 727
Cdd:PRK13631 259 T 259
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
511-721 |
1.08e-18 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 86.72 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTL--QNMTVL-AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYI-SGY---DISK--- 580
Cdd:COG4778 5 LEVENLSKTFTLhlQGGKRLpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrHDGgwvDLAQasp 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 581 -DMVQVRKS-LGLCPQ----------DDIlfhhltVSEHLyfycVIKGVPPEIQSKEINKMLISFGLIEK-HDALAKSLS 647
Cdd:COG4778 85 rEILALRRRtIGYVSQflrviprvsaLDV------VAEPL----LERGVDREEARARARELLARLNLPERlWDLPPATFS 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 648 GGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLT-THHMDEADVLGDRIAIMAKGT 721
Cdd:COG4778 155 GGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGiFHDEEVREAVADRVVDVTPFS 229
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
511-727 |
1.39e-18 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 89.62 E-value: 1.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFtlQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKsLG 590
Cdd:PRK09452 15 VELRGISKSF--DGKEVI--SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH-VN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQDDILFHHLTVSEHLYFYCVIKGVP-PEIQS--KEINKM--LISFGLIEKHDalaksLSGGMKRKLSIIIALIGGSK 665
Cdd:PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPaAEITPrvMEALRMvqLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPK 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 666 VVILDEPTSGMDPVSRR---FTWDVLQKhKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:PRK09452 165 VLLLDESLSALDYKLRKqmqNELKALQR-KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
527-720 |
1.44e-18 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 86.86 E-value: 1.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 527 VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ--VRKSLGLCPQDDILFHHLTV 604
Cdd:PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAkiMREAVAIVPEGRRVFSRMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHLyfycVIKGVPPEIQ--SKEINKMLISFG-LIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR 681
Cdd:PRK11614 98 EENL----AMGGFFAERDqfQERIKWVYELFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 682 RFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11614 174 QQIFDTIEQlREQGMTIFLVEQNANQALKLADRGYVLENG 213
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1343-1582 |
1.56e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 87.35 E-value: 1.56e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1343 NSIVLIKeLIKVYFSKP--VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKV 1419
Cdd:PRK13632 3 NKSVMIK-VENVSFSYPnsENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKeNLKEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1420 RSKIGYC---P--QF-------D---ALLDYMTAREIMimyarlwgipETKINNYVKKsmeaLNLESYADKYIYTYSGGN 1484
Cdd:PRK13632 82 RKKIGIIfqnPdnQFigatvedDiafGLENKKVPPKKM----------KDIIDDLAKK----VGMEDYLDKEPQNLSGGQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1485 KRRLSTAIALMGKPSVIFLDEpSTGM-DPVARRLLWNAVTRTRESG-KAIIITSHSMEECdALCTKLAIMVKGKFVCLGS 1562
Cdd:PRK13632 148 KQRVAIASVLALNPEIIIFDE-STSMlDPKGKREIKKIMVDLRKTRkKTLISITHDMDEA-ILADKVIVFSEGKLIAQGK 225
|
250 260
....*....|....*....|.
gi 1387244451 1563 PQH-LKNKfgnVYILKVKINI 1582
Cdd:PRK13632 226 PKEiLNNK---EILEKAKIDS 243
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
526-722 |
1.63e-18 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 86.69 E-value: 1.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 526 TVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI---SKDMVQVRKSLGLCPQDDILFHHL 602
Cdd:PRK09493 15 QVL--HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVndpKVDERLIRQEAGMVFQQFYLFPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 603 TVSEHLYFYCV-IKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR 681
Cdd:PRK09493 93 TALENVMFGPLrVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1387244451 682 RFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:PRK09493 173 HEVLKVMQDlAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
1363-1566 |
1.71e-18 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 86.47 E-value: 1.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT----KNILKVRSKIGYCPQFDALLDYMTA 1438
Cdd:cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINklkgKALRQLRRQIGMIFQQFNLIERLSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1439 REiMIMYARL------WGI-----PETKINNYvkKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPS 1507
Cdd:cd03256 96 LE-NVLSGRLgrrstwRSLfglfpKEEKQRAL--AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1508 TGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:cd03256 173 ASLDPASSRQVMDLLKRiNREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1363-1566 |
2.19e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 87.17 E-value: 2.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIGYCPQF--DALLDYMTAR 1439
Cdd:PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKeNIREVRKFVGLVFQNpdDQIFSPTVEQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1440 EIMIMYARLwGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLW 1519
Cdd:PRK13652 99 DIAFGPINL-GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1387244451 1520 NAVTRTRES-GKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK13652 178 DFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
529-720 |
2.69e-18 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 86.22 E-value: 2.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISG--YDIS-----KDMVQVRKSLGLCPQDDILFHH 601
Cdd:PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGnhFDFSktpsdKAIRELRRNVGMVFQQYNLWPH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 602 LTVSEHLYFY-CVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPvs 680
Cdd:PRK11124 97 LTVQQNLIEApCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP-- 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1387244451 681 rRFTWDVLQKHKE----NRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11124 175 -EITAQIVSIIRElaetGITQVIVTHEVEVARKTASRVVYMENG 217
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
1363-1566 |
2.93e-18 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 85.70 E-value: 2.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTG-----EEVASSGDVFV---ERLSITKNILKVRSKIGYCPQFDALLD 1434
Cdd:cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndliPGAPDEGEVLLdgkDIYDLDVDVLELRRRVGMVFQKPNPFP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1435 yMTAREIMIMYARLWGIPETKINNY-VKKSMEALNL-ESYADKYIYTY-SGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:cd03260 95 -GSIYDNVAYGLRLHGIKLKEELDErVEEALRKAALwDEVKDRLHALGlSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1512 PVARRLLWNAVTRTRESgKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:cd03260 174 PISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
529-708 |
3.60e-18 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 90.04 E-value: 3.60e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTVSEH 607
Cdd:TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADaDADSWRDQIAWVPQHPFLFAG-TIAEN 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFYCvikgvpPEIQSKEINKMLISFGLIEKHDAL-----------AKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:TIGR02857 416 IRLAR------PDASDAEIREALERAGLDEFVAALpqgldtpigegGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL 489
|
170 180 190
....*....|....*....|....*....|....*
gi 1387244451 677 DPVSRRFTWDVLQKHKENRTVLLTTH---HMDEAD 708
Cdd:TIGR02857 490 DAETEAEVLEALRALAQGRTVLLVTHrlaLAALAD 524
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
531-710 |
3.68e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 84.54 E-value: 3.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 531 QDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIskDMVQVRKS---LGlcpQDDILFHHLTVSEH 607
Cdd:PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI--DDPDVAEAchyLG---HRNAMKPALTVAEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFYCVIKGVPPEiqskEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS-RRFTwD 686
Cdd:PRK13539 94 LEFWAAFLGGEEL----DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAvALFA-E 168
|
170 180
....*....|....*....|....*...
gi 1387244451 687 VLQKH-KENRTVLLTTHH---MDEADVL 710
Cdd:PRK13539 169 LIRAHlAQGGIVIAATHIplgLPGAREL 196
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1333-1563 |
3.74e-18 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 85.90 E-value: 3.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1333 RILDNPQESLNSIVLIKELIKvyfsKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVfverlsi 1412
Cdd:COG1134 15 RLYHEPSRSLKELLLRRRRTR----REEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1413 tknilKVRSKIGycpqfdALLDY-------MTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNK 1485
Cdd:COG1134 84 -----EVNGRVS------ALLELgagfhpeLTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELGDFIDQPVKTYSSGMR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1486 RRLSTAIALMGKPSVIFLDEP-STGmDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSP 1563
Cdd:COG1134 153 ARLAFAVATAVDPDILLVDEVlAVG-DAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDP 230
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1361-1568 |
3.80e-18 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 85.42 E-value: 3.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKniLK----VRSKIGYCPQFDALLDYM 1436
Cdd:COG0410 16 IHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITG--LPphriARLGIGYVPEGRRIFPSL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TARE--IMIMYARlwgipetKINNYVKKSMEAlnlesyadkyIYTY---------------SGGNKRRLSTAIALMGKPS 1499
Cdd:COG0410 94 TVEEnlLLGAYAR-------RDRAEVRADLER----------VYELfprlkerrrqragtlSGGEQQMLAIGRALMSRPK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1500 VIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:COG0410 157 LLLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLA 225
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
1373-1556 |
3.80e-18 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 85.04 E-value: 3.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1373 KQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVE-------RLSItkNILKVRSKIGYCPQFDALLDYMTAREiMIMY 1445
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNgtvlfdsRKKI--NLPPQQRKIGLVFQQYALFPHLNVRE-NLAF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1446 ArLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRT 1525
Cdd:cd03297 99 G-LKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQI 177
|
170 180 190
....*....|....*....|....*....|..
gi 1387244451 1526 RES-GKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:cd03297 178 KKNlNIPVIFVTHDLSEAEYLADRIVVMEDGR 209
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
1366-1624 |
5.04e-18 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 90.11 E-value: 5.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1366 NISVAIQKQECFGLLGLNGAGKTT-----TFEILTGEEVasSGDVFVERLSITKNILKVRSkiGYCPQFDALLDYMTARE 1440
Cdd:TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTlmnalAFRSPKGVKG--SGSVLLNGMPIDAKEMRAIS--AYVQQDDLFIPTLTVRE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1441 IMIMYARLW---GIPETKINNYVKKSMEALNLESYADKYIYT------YSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:TIGR00955 119 HLMFQAHLRmprRVTKKEKRERVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1512 PVARRLLWNAVTRTRESGKAIIITSHS-MEECDALCTKLAIMVKGKFVCLGSPQHLKNKFGnvyilKVKINIDENKDKLE 1590
Cdd:TIGR00955 199 SFMAYSVVQVLKGLAQKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQAVPFFS-----DLGHPCPENYNPAD 273
|
250 260 270
....*....|....*....|....*....|....*..
gi 1387244451 1591 HFKTFVETAfPGSELK--DENRGII-NYYVPSKNNSW 1624
Cdd:TIGR00955 274 FYVQVLAVI-PGSENEsrERIEKICdSFAVSDIGRDM 309
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
511-727 |
5.20e-18 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 85.45 E-value: 5.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFtlQNMTVlaVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSL 589
Cdd:PRK11231 3 LRTENLTVGY--GTKRI--LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMlSSRQLARRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQddilfHHLTV-------------SEHLYFYCVIKGVPPEIQSKEINKMlisfGLIEKHDALAKSLSGGMKRKLSI 656
Cdd:PRK11231 79 ALLPQ-----HHLTPegitvrelvaygrSPWLSLWGRLSAEDNARVNQAMEQT----RINHLADRRLTDLSGGQRQRAFL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 657 IIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKEN-RTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQgKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1359-1557 |
5.90e-18 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 83.25 E-value: 5.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1359 PVVLAVRNISVA---------IQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVF-----VERLSITKNIlkvRSKIG 1424
Cdd:cd03215 2 EPVLEVRGLSVKgavrdvsfeVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITldgkpVTRRSPRDAI---RAGIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1425 YCP---QFDALLDYMTAREIMIMYARLwgipetkinnyvkksmealnlesyadkyiytySGGNKRRLSTAIALMGKPSVI 1501
Cdd:cd03215 79 YVPedrKREGLVLDLSVAENIALSSLL--------------------------------SGGNQQKVVLARWLARDPRVL 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1502 FLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKF 1557
Cdd:cd03215 127 ILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
1363-1541 |
5.92e-18 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 83.82 E-value: 5.92e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERlsitknilkvRSKIGYCPQFDALLDYM--TARE 1440
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG----------GARVAYVPQRSEVPDSLplTVRD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1441 IMIM--YAR--LWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARR 1516
Cdd:NF040873 77 LVAMgrWARrgLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAESRE 156
|
170 180
....*....|....*....|....*
gi 1387244451 1517 LLWNAVTRTRESGKAIIITSHSMEE 1541
Cdd:NF040873 157 RIIALLAEEHARGATVVVVTHDLEL 181
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
529-722 |
6.58e-18 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 89.39 E-value: 6.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ-VRKSLGLCPQDDILFHHlTVSEH 607
Cdd:TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAsLRRQVALVSQDVVLFND-TIANN 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFycvikGVPPEIQSKEINKMLISFGLIEKHDALAKS-----------LSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:TIGR02203 426 IAY-----GRTEQADRAEIERALAAAYAQDFVDKLPLGldtpigengvlLSGGQRQRLAIARALLKDAPILILDEATSAL 500
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1387244451 677 DPVSRRFTWDVLQKHKENRTVLLTTHHMDEADVlGDRIAIMAKGTL 722
Cdd:TIGR02203 501 DNESERLVQAALERLMQGRTTLVIAHRLSTIEK-ADRIVVMDDGRI 545
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
528-703 |
6.89e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 83.85 E-value: 6.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 528 LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLCPQDDILFHHLTVSEH 607
Cdd:PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFycvikGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDV 687
Cdd:PRK13540 95 CLY-----DIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITK 169
|
170
....*....|....*..
gi 1387244451 688 LQKH-KENRTVLLTTHH 703
Cdd:PRK13540 170 IQEHrAKGGAVLLTSHQ 186
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
528-721 |
8.57e-18 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 85.04 E-value: 8.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 528 LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI---SKDMVqVRKSLGLCPQDDILFHHLTV 604
Cdd:PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIeglPGHQI-ARMGVVRTFQHVRLFREMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHL-----------YFYCVIKgvPPEIQSKEINKM------LISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVV 667
Cdd:PRK11300 98 IENLlvaqhqqlktgLFSGLLK--TPAFRRAESEALdraatwLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEIL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 668 ILDEPTSGMDPvsrRFTWDVLQ-----KHKENRTVLLTTHHMDEADVLGDRIAIMAKGT 721
Cdd:PRK11300 176 MLDEPAAGLNP---KETKELDEliaelRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1363-1563 |
9.40e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 85.56 E-value: 9.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTG-----EEVASSGDVFVERLSITKNILKVRSKIGYCPQF-DALLDYM 1436
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGllqptEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFpESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TAREIMIMYARLWGIPETKINNYVKKSMEALNL-ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVAR 1515
Cdd:PRK13643 101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLaDEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1387244451 1516 RLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSP 1563
Cdd:PRK13643 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
529-678 |
9.88e-18 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 84.29 E-value: 9.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS-------KDMVQVRKSLGLCPQDDILFHH 601
Cdd:COG4161 17 ALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDfsqkpseKAIRLLRQKVGMVFQQYNLWPH 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 602 LTVSEHLYFY-CVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDP 678
Cdd:COG4161 97 LTVMENLIEApCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1363-1568 |
1.22e-17 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 84.30 E-value: 1.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDvfverLSIT------------KNILKVRSKIGYCPQFD 1430
Cdd:PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT-----LNIAgnhfdfsktpsdKAIRELRRNVGMVFQQY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1431 ALLDYMTAREIMIMY-ARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTG 1509
Cdd:PRK11124 92 NLWPHLTVQQNLIEApCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1510 MDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:PRK11124 172 LDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
1363-1579 |
1.29e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 85.18 E-value: 1.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT-----KNILKVRSKIGYCPQF-DALLDYM 1436
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknKDIKQIRKKVGLVFQFpESQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TAREIMIMYARLWGIPETKInnyVKKSMEALNL----ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDP 1512
Cdd:PRK13649 102 TVLKDVAFGPQNFGVSQEEA---EALAREKLALvgisESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 1513 VARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPqhlKNKFGNVYILKVK 1579
Cdd:PRK13649 179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP---KDIFQDVDFLEEK 242
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
1350-1558 |
1.36e-17 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 83.41 E-value: 1.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFSKP--VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIGYC 1426
Cdd:cd03245 4 EFRNVSFSYPnqEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1427 PQfDALLDYMTAREIMIMyarlwGIPETKiNNYVKKSMEALNLESYADKYIYTY-----------SGGNKRRLSTAIALM 1495
Cdd:cd03245 84 PQ-DVTLFYGTLRDNITL-----GAPLAD-DERILRAAELAGVTDFVNKHPNGLdlqigergrglSGGQRQAVALARALL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1496 GKPSVIFLDEPSTGMDPVARRLLWNAVTRTReSGKAIIITSH--SMeecDALCTKLAIMVKGKFV 1558
Cdd:cd03245 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHrpSL---LDLVDRIIVMDSGRIV 217
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
537-735 |
1.62e-17 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 88.57 E-value: 1.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 537 LYEGQITVLLGHNGAGKTTTLSILTGlYRPT----SGKVYISGYDISKDMVQVRKslGLCPQDDILFHHLTVSEHLYFYC 612
Cdd:TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAF-RSPKgvkgSGSVLLNGMPIDAKEMRAIS--AYVQQDDLFIPTLTVREHLMFQA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 613 VIK---GVPPEIQSKEINKMLISFGLIEKHDAL------AKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRF 683
Cdd:TIGR00955 125 HLRmprRVTKKEKRERVDEVLQALGLRKCANTRigvpgrVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 684 TWDVLQKHKENRTVLLTTHHMDEADV--LGDRIAIMAkgtlqcCGSTIFLKKVY 735
Cdd:TIGR00955 205 VVQVLKGLAQKGKTIICTIHQPSSELfeLFDKIILMA------EGRVAYLGSPD 252
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
1350-1540 |
1.62e-17 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 83.23 E-value: 1.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFSKP-VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT----KNILKVRSKIG 1424
Cdd:cd03292 2 EFINVTKTYPnGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSdlrgRAIPYLRRKIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1425 YCPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLD 1504
Cdd:cd03292 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 1387244451 1505 EPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSME 1540
Cdd:cd03292 162 EPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
1358-1556 |
2.13e-17 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 81.49 E-value: 2.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1358 KPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIGYCPQFDALLDYM 1436
Cdd:cd03246 14 EPPVL--RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVGYLPQDDELFSGS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TAREIMimyarlwgipetkinnyvkksmealnlesyadkyiytySGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARR 1516
Cdd:cd03246 92 IAENIL--------------------------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER 133
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 1517 LLWNAVTRTRESGKAIIITSHSMEECdALCTKLAIMVKGK 1556
Cdd:cd03246 134 ALNQAIAALKAAGATRIVIAHRPETL-ASADRILVLEDGR 172
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
531-720 |
2.23e-17 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 83.43 E-value: 2.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 531 QDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFH--------- 600
Cdd:cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvTLDSLRRAIGVVPQDTVLFNdtigyniry 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 601 -HLTVS-EHLYFYCVIKGVPPEIQS--KEINKMLISFGLiekhdalakSLSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:cd03253 98 gRPDATdEEVIEAAKAAQIHDKIMRfpDGYDTIVGERGL---------KLSGGEKQRVAIARAILKNPPILLLDEATSAL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1387244451 677 DPVSRRFTWDVLQKHKENRTVLLTTHHMDEAdVLGDRIAIMAKG 720
Cdd:cd03253 169 DTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VNADKIIVLKDG 211
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
529-730 |
2.64e-17 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 82.80 E-value: 2.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRP----TSGKVYISGYDISKDMVQVRKsLGLCPQDDI-LFHHL- 602
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLDGRPLLPLSIRGRH-IATIMQNPRtAFNPLf 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 603 TVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAK---SLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPV 679
Cdd:TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKypfQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 680 SRRFTWDVLQKHKENR--TVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS--TIF 730
Cdd:TIGR02770 160 NQARVLKLLRELRQLFgtGILLITHDLGVVARIADEVAVMDDGRIVERGTvkEIF 214
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1345-1563 |
2.71e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 84.90 E-value: 2.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1345 IVLIKELIKVYFSKPV--VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSI---------- 1412
Cdd:PRK13631 21 ILRVKNLYCVFDEKQEneLVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIgdkknnheli 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1413 -------TKNILKVRSKIGYCPQFDALLDYMTAREIMIMYARL-WGIPETKINNYVKKSMEALNL-ESYADKYIYTYSGG 1483
Cdd:PRK13631 101 tnpyskkIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVaLGVKKSEAKKLAKFYLNKMGLdDSYLERSPFGLSGG 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1484 NKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSP 1563
Cdd:PRK13631 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP 260
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
1348-1622 |
3.17e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 84.37 E-value: 3.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSK-PVVL-AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDV------------------FV 1407
Cdd:PRK13651 5 VKNIVKIFNKKlPTELkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewifkdeknkkktkekekVL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1408 ERLSIT-------KNILKVRSKIGYCPQF-DALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNL-ESYADKYIY 1478
Cdd:PRK13651 85 EKLVIQktrfkkiKKIKEIRRRVGVVFQFaEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLdESYLQRSPF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1479 TYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEecDAL-CTKLAIMVK-GK 1556
Cdd:PRK13651 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD--NVLeWTKRTIFFKdGK 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1557 FVclgspqhlknKFGNVY-ILKVKINIDENKDKLEHFKTFVEtafpgselKDENRGI--------------INYYVPSKN 1621
Cdd:PRK13651 243 II----------KDGDTYdILSDNKFLIENNMEPPKLLNFVN--------KLEKKGIdvpkvtsieelaseINMYLEKKN 304
|
.
gi 1387244451 1622 N 1622
Cdd:PRK13651 305 K 305
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
529-720 |
3.53e-17 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 83.21 E-value: 3.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQvrksLGLCPQDDILFHHLTVSEHL 608
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE----RGVVFQNEGLLPWRNVQDNV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 609 YFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVL 688
Cdd:PRK11248 92 AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLL 171
|
170 180 190
....*....|....*....|....*....|....
gi 1387244451 689 QK--HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11248 172 LKlwQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
530-728 |
4.49e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 82.79 E-value: 4.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYR------PTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHL 602
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQiDAIKLRKEVGMVFQQPNPFPHL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 603 TVSEHLYFYCVIKGVPPEIQSKEI-NKMLISFGLI-EKHDAL---AKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMD 677
Cdd:PRK14246 106 SIYDNIAYPLKSHGIKEKREIKKIvEECLRKVGLWkEVYDRLnspASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 678 PVSRRFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:PRK14246 186 IVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1348-1565 |
4.88e-17 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 83.95 E-value: 4.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELiKVYF--SKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTG---EEVASSGDVFVERLSIT----KNILK 1418
Cdd:COG0444 4 VRNL-KVYFptRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpPPGITSGEILFDGEDLLklseKELRK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1419 VRSK-IGYCPQfDAL--LD-YMTAREIMI-MYARLWGIPETKINNYVKKSMEALNL---ESYADKYIYTYSGGNKRRLST 1490
Cdd:COG0444 83 IRGReIQMIFQ-DPMtsLNpVMTVGDQIAePLRIHGGLSKAEARERAIELLERVGLpdpERRLDRYPHELSGGMRQRVMI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1491 AIALMGKPSVIFLDEPSTGMDPVARR----LLwnaVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGS---- 1562
Cdd:COG0444 162 ARALALEPKLLIADEPTTALDVTIQAqilnLL---KDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPveel 238
|
....*.
gi 1387244451 1563 ---PQH 1565
Cdd:COG0444 239 fenPRH 244
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
1350-1556 |
6.05e-17 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 80.12 E-value: 6.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFSKP--VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIGYC 1426
Cdd:cd03228 2 EFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNIAYV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1427 PQfDALLDYMTAREimimyarlwgipetkinnyvkksmealNLesyadkyiytYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:cd03228 82 PQ-DPFLFSGTIRE---------------------------NI----------LSGGQRQRIAIARALLRDPPILILDEA 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1507 STGMDPVARRLLWNAVTRTREsGKAIIITSHSMEECDaLCTKLAIMVKGK 1556
Cdd:cd03228 124 TSALDPETEALILEALRALAK-GKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
526-702 |
1.08e-16 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 85.93 E-value: 1.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 526 TVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMVQVRKS-LGLCPQDDILFH 600
Cdd:PRK10535 20 QVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATldadALAQLRREhFGFIFQRYHLLS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 601 HLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS 680
Cdd:PRK10535 100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
|
170 180
....*....|....*....|...
gi 1387244451 681 RRFTWDVL-QKHKENRTVLLTTH 702
Cdd:PRK10535 180 GEEVMAILhQLRDRGHTVIIVTH 202
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
530-720 |
1.12e-16 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 80.38 E-value: 1.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGL---YRPTSGKVYISGYDISKDMVQVRKSLGLCPQDDILFHHLTVSE 606
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRtegNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 607 HLYFYCVIKGvppeiqskeinkmlisfgliekhDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSrrfTWD 686
Cdd:cd03233 103 TLDFALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST---ALE 156
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 687 VLQK-----HKENRTVLLTTHHM-DEADVLGDRIAIMAKG 720
Cdd:cd03233 157 ILKCirtmaDVLKTTTFVSLYQAsDEIYDLFDKVLVLYEG 196
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1348-1565 |
1.43e-16 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 82.93 E-value: 1.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVY-FSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT----KNILKVRSK 1422
Cdd:PRK11153 4 LKNISKVFpQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTalseKELRKARRQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1423 IGYCPQFDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIF 1502
Cdd:PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1503 LDEPSTGMDPvarrllwnAVTRT---------RESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGS-------PQH 1565
Cdd:PRK11153 164 CDEATSALDP--------ATTRSilellkdinRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTvsevfshPKH 234
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1359-1558 |
1.43e-16 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 84.68 E-value: 1.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1359 PVVLAVRNISVA---------IQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERLSITKNILKVRSKIGYCP 1427
Cdd:COG1129 254 EVVLEVEGLSVGgvvrdvsfsVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLdgKPVRIRSPRDAIRAGIAYVP 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1428 ---QFDALLDYMTAREIMIM-----YARLWGIPETKINNYVKKSMEALNLE-SYADKYIYTYSGGNKRRLSTAIALMGKP 1498
Cdd:COG1129 334 edrKGEGLVLDLSIRENITLasldrLSRGGLLDRRRERALAEEYIKRLRIKtPSPEQPVGNLSGGNQQKVVLAKWLATDP 413
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1499 SVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:COG1129 414 KVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAVIVISSELPELLGLSDRILVMREGRIV 473
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
511-740 |
1.52e-16 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 81.36 E-value: 1.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYkeFTLQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQVR 586
Cdd:PRK13548 3 LEARNLS--VRLGGRTLL--DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAdwspAELARRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLglcPQDDILFHHLTVSEhlyfycVIkgvppeiqskeinKM-LISFGLIEKHD------ALAK------------SLS 647
Cdd:PRK13548 79 AVL---PQHSSLSFPFTVEE------VV-------------AMgRAPHGLSRAEDdalvaaALAQvdlahlagrdypQLS 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 648 GGMK------RKLSIIIALIGGSKVVILDEPTSGMDP--------VSRRFTwdvlqkHKENRTVLLTTHHMDEADVLGDR 713
Cdd:PRK13548 137 GGEQqrvqlaRVLAQLWEPDGPPRWLLLDEPTSALDLahqhhvlrLARQLA------HERGLAVIVVLHDLNLAARYADR 210
|
250 260 270
....*....|....*....|....*....|....*..
gi 1387244451 714 IAIMAKGTLQCCGS------TIFLKKVYG----VGYH 740
Cdd:PRK13548 211 IVLLHQGRLVADGTpaevltPETLRRVYGadvlVQPH 247
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
511-728 |
1.54e-16 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 84.72 E-value: 1.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLG 590
Cdd:PRK15439 12 LCARSISKQYS----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 --LCPQDDILFHHLTVSEHLYFycvikGVP-PEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVV 667
Cdd:PRK15439 88 iyLVPQEPLLFPNLSVKENILF-----GLPkRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 668 ILDEPTSGMDPV-SRRFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:PRK15439 163 ILDEPTASLTPAeTERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKT 224
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
1366-1584 |
1.86e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 81.80 E-value: 1.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1366 NISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT-----KNILKVRSKIGYCPQF-DALLDYMTAR 1439
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgnKNLKKLRKKVSLVFQFpEAQLFENTVL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1440 EIMIMYARLWGIPETKINNYVKKSMEALNL-ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLL 1518
Cdd:PRK13641 105 KDVEFGPKNFGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1519 WNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPqhlKNKFGNVYILKvKINIDE 1584
Cdd:PRK13641 185 MQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP---KEIFSDKEWLK-KHYLDE 246
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1344-1566 |
1.94e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 81.70 E-value: 1.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1344 SIVLIKELIKVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT-KNILKVRSK 1422
Cdd:PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTeENVWDIRHK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1423 IGYCPQF-DALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVI 1501
Cdd:PRK13650 83 IGMVFQNpDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1502 FLDEPSTGMDPVARRLLWNAVTRTRES-GKAIIITSHSMEECdALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK13650 163 ILDEATSMLDPEGRLELIKTIKGIRDDyQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPREL 227
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1363-1564 |
2.00e-16 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 82.89 E-value: 2.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERLSITkniLKVR-SKIGYCPQFDALLDYMTAR 1439
Cdd:COG1118 17 LLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLngRDLFTN---LPPReRRVGFVFQHYALFPHMTVA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1440 EiMIMYA-RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLL 1518
Cdd:COG1118 94 E-NIAFGlRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEPFGALDAKVRKEL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1387244451 1519 WNAVTRT-RESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQ 1564
Cdd:COG1118 173 RRWLRRLhDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPD 219
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
530-706 |
2.08e-16 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 80.14 E-value: 2.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTVSEHL 608
Cdd:PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTlKPEIYRQQVSYCAQTPTLFGD-TVYDNL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 609 YFYCVIKGVPPEiqSKEINKMLISFGLIEkhDALAKS---LSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTW 685
Cdd:PRK10247 102 IFPWQIRNQQPD--PAIFLDDLERFALPD--TILTKNiaeLSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177
|
170 180
....*....|....*....|...
gi 1387244451 686 DVLQKH--KENRTVLLTTHHMDE 706
Cdd:PRK10247 178 EIIHRYvrEQNIAVLWVTHDKDE 200
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1332-1576 |
2.08e-16 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 85.27 E-value: 2.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1332 NRILDNPQESLNSIVLIK--------ELIKVYFS----KPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEV 1399
Cdd:COG2274 449 DDILDLPPEREEGRSKLSlprlkgdiELENVSFRypgdSPPVL--DNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYE 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1400 ASSGDVFVERLSITK-NILKVRSKIGYCPQfDALLDYMTARE-ImimyaRLW--GIPETKInnyvkksMEALNLeSYADK 1475
Cdd:COG2274 527 PTSGRILIDGIDLRQiDPASLRRQIGVVLQ-DVFLFSGTIREnI-----TLGdpDATDEEI-------IEAARL-AGLHD 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1476 YIY---------------TYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVtRTRESGKAIIITSH--- 1537
Cdd:COG2274 593 FIEalpmgydtvvgeggsNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENL-RRLLKGRTVIIIAHrls 671
|
250 260 270
....*....|....*....|....*....|....*....
gi 1387244451 1538 SMEECDalctKLAIMVKGKFVCLGSPQHLKNKFGNVYIL 1576
Cdd:COG2274 672 TIRLAD----RIIVLDKGRIVEDGTHEELLARKGLYAEL 706
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
527-720 |
2.39e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 84.19 E-value: 2.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 527 VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISG----YDISKDMVQ-----VRKSLGLCPQddi 597
Cdd:PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGqemrFASTTAALAagvaiIYQELHLVPE--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 598 lfhhLTVSEHLYFycvikGVPPE----IQSKEINK----MLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVIL 669
Cdd:PRK11288 94 ----MTVAENLYL-----GQLPHkggiVNRRLLNYeareQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 670 DEPTSGMdpvSRRFTwDVL-----QKHKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11288 165 DEPTSSL---SAREI-EQLfrvirELRAEGRVILYVSHRMEEIFALCDAITVFKDG 216
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
516-723 |
2.41e-16 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 80.24 E-value: 2.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 516 LYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVR-----KSLG 590
Cdd:PRK11629 11 LCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKaelrnQKLG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 LCPQddilFHHL----TVSEHLYFYCVIKGVPP-EIQSKEInKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSK 665
Cdd:PRK11629 91 FIYQ----FHHLlpdfTALENVAMPLLIGKKKPaEINSRAL-EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 666 VVILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLgDRIAIMAKGTLQ 723
Cdd:PRK11629 166 LVLADEPTGNLDARNADSIFQLLGElnRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLT 224
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
529-727 |
2.87e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 81.21 E-value: 2.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS------KDMVQVRKSLGLCPQ--DDILFH 600
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPanlkkiKEVKRLRKEIGLVFQfpEYQLFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 601 HlTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAK-SLSGGMKRKLSI--IIALIGgsKVVILDEPTSGMD 677
Cdd:PRK13645 106 E-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPfELSGGQKRRVALagIIAMDG--NTLVLDEPTGGLD 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 678 PVSRRFTWDVLQKHKEN--RTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:PRK13645 183 PKGEEDFINLFERLNKEykKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
530-682 |
2.87e-16 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 83.96 E-value: 2.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISgydiskdmVQVRksLGLCPQD-DILFHHLTVSEHl 608
Cdd:COG0488 331 LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLG--------ETVK--IGYFDQHqEELDPDKTVLDE- 399
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 609 yfycvIKGVPPEIQSKEINKMLISFGLI-EKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRR 682
Cdd:COG0488 400 -----LRDGAPGGTEQEVRGYLGRFLFSgDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLE 469
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1341-1564 |
3.98e-16 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 82.30 E-value: 3.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1341 SLNSIVLIKELIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITkNILKVR 1420
Cdd:PRK09452 10 SLSPLVELRGISKSFDGKEVI---SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT-HVPAEN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1421 SKIGYCPQFDALLDYMTAREIMIMYARLWGIPETKINNYVkksMEAL---NLESYADKYIYTYSGGNKRRLSTAIALMGK 1497
Cdd:PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRV---MEALrmvQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1498 PSVIFLDEPSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQ 1564
Cdd:PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKAlQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
1362-1566 |
5.03e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 80.45 E-value: 5.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1362 LAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT-----KNILKVRSKIGYCPQF--DALLD 1434
Cdd:PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknKKLKPLRKKVGIVFQFpeHQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1435 YMTAREIMI--MYarlWGIPETKINNYVKKSMEALNL-ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PRK13634 101 ETVEKDICFgpMN---FGVSEEDAKQKAREMIELVGLpEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1512 PVARRLLWNAVTRT-RESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK13634 178 PKGRKEMMEMFYKLhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
511-720 |
7.42e-16 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 79.29 E-value: 7.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlQNMTVLAVqdlSLNLYEGQITVLLGHNGAGKTTTLSILTGLY---RPTSGKVYISGYDI------SKD 581
Cdd:PRK09984 5 IRVEKLAKTFN-QHQALHAV---DLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdKSAGSHIELLGRTVqregrlARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 582 MVQVRKSLGLCPQDDILFHHLTVSEHLYFYCVikGVPP----------EIQSKEINKMLISFGLIEKHDALAKSLSGGMK 651
Cdd:PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGAL--GSTPfwrtcfswftREQKQRALQALTRVGMVHFAHQRVSTLSGGQQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 652 RKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENR--TVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDgiTVVVTLHQVDYALRYCERIVALRQG 229
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
1363-1569 |
8.37e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 79.82 E-value: 8.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT-----KNILKVRSKIGYCPQF--DALLDY 1435
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIThktkdKYIRPVRKRIGMVFQFpeSQLFED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1436 MTAREImIMYARLWGIPETKINNYVKKSMEALNLE-SYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVA 1514
Cdd:PRK13646 102 TVEREI-IFGPKNFKMNLDEVKNYAHRLLMDLGFSrDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1515 RRLLWNAVTRTR-ESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNK 1569
Cdd:PRK13646 181 KRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
531-702 |
9.91e-16 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 82.42 E-value: 9.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 531 QDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydiskdmvqvRKSLGLCPQDDILFHHLTVSEHlyf 610
Cdd:COG0488 15 DDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK----------GLRIGYLPQEPPLDDDLTVLDT--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 611 ycVIKGVPP--------------------------EIQSK-----------EINKMLISFGL-IEKHDALAKSLSGGMKR 652
Cdd:COG0488 82 --VLDGDAElraleaeleeleaklaepdedlerlaELQEEfealggweaeaRAEEILSGLGFpEEDLDRPVSELSGGWRR 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 653 KLSIIIALIGGSKVVILDEPTSGMDPVSRRftW--DVLQKHKenRTVLLTTH 702
Cdd:COG0488 160 RVALARALLSEPDLLLLDEPTNHLDLESIE--WleEFLKNYP--GTVLVVSH 207
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
540-720 |
1.33e-15 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 76.90 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 540 GQITVLLGHNGAGKTTTLSILTGlyRPTSGKV----YISGYDISKDMvqvRKSLGLCPQDDILFHHLTVSEHLYFYCVIK 615
Cdd:cd03232 33 GTLTALMGESGAGKTTLLDVLAG--RKTAGVItgeiLINGRPLDKNF---QRSTGYVEQQDVHSPNLTVREALRFSALLR 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 616 GvppeiqskeinkmlisfgliekhdalaksLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSrrfTWDVLQKHK--- 692
Cdd:cd03232 108 G-----------------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA---AYNIVRFLKkla 155
|
170 180 190
....*....|....*....|....*....|.
gi 1387244451 693 -ENRTVLLTTHHmDEADVLG--DRIAIMAKG 720
Cdd:cd03232 156 dSGQAILCTIHQ-PSASIFEkfDRLLLLKRG 185
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
527-742 |
1.39e-15 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 82.46 E-value: 1.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 527 VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTVS 605
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQyDHHYLHRQVALVGQEPVLFSG-SVR 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 606 EHLYFYCvikgvppeiQSKEINKMLISFGLIEKHDALAK--------------SLSGGMKRKLSIIIALIGGSKVVILDE 671
Cdd:TIGR00958 573 ENIAYGL---------TDTPDEEIMAAAKAANAHDFIMEfpngydtevgekgsQLSGGQKQRIAIARALVRKPRVLILDE 643
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 672 PTSGMDPVSRRFTWDvlQKHKENRTVLLTTHHMDEADVlGDRIAIMAKGTLQCCGSTIFLKKVYGVGYHLI 742
Cdd:TIGR00958 644 ATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
523-721 |
3.64e-15 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 75.97 E-value: 3.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 523 QNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydiskdmvqvrkSLGLCPQ-------- 594
Cdd:cd03250 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQepwiqngt 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 595 --DDILFHHlTVSEHLYFyCVIK-------------GVPPEIQSKEINkmlisfgliekhdalaksLSGGMKRKLSIIIA 659
Cdd:cd03250 82 irENILFGK-PFDEERYE-KVIKacalepdleilpdGDLTEIGEKGIN------------------LSGGQKQRISLARA 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 660 LIGGSKVVILDEPTSGMDP-VSRRFTWDVLQKH-KENRTVLLTTHHMD---EAdvlgDRIAIMAKGT 721
Cdd:cd03250 142 VYSDADIYLLDDPLSAVDAhVGRHIFENCILGLlLNNKTRILVTHQLQllpHA----DQIVVLDNGR 204
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1362-1564 |
4.05e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 77.48 E-value: 4.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1362 LAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT-KNILKVRSKIGYCPQ------------ 1428
Cdd:PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITdDNFEKLRKHIGIVFQnpdnqfvgsivk 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 FD---ALLDYMtareimimyarlwgIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDE 1505
Cdd:PRK13648 103 YDvafGLENHA--------------VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1506 PSTGMDPVARRLLWNAVTRTRESGKAIIIT-SHSMEECdALCTKLAIMVKGKFVCLGSPQ 1564
Cdd:PRK13648 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISiTHDLSEA-MEADHVIVMNKGTVYKEGTPT 227
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1363-1566 |
4.25e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 77.33 E-value: 4.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT--KNILKVRSKIGYCPQF-DALLDYMTAR 1439
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGdfSKLQGIRKLVGIVFQNpETQFVGRTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1440 EIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLW 1519
Cdd:PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1387244451 1520 NAVTRTRESGKAIIITSHSMEECDAlCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK13644 177 ERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENV 222
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
521-720 |
5.04e-15 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 78.92 E-value: 5.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 521 TLQNMT-----VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydisKDMVQV---RKSLGLC 592
Cdd:PRK11000 5 TLRNVTkaygdVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE----KRMNDVppaERGVGMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 593 PQDDILFHHLTVSEHLYFYCVIKGV-PPEIQSK--EINKMLISFGLIEKHdalAKSLSGGMKRKLSIIIALIGGSKVVIL 669
Cdd:PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAkKEEINQRvnQVAEVLQLAHLLDRK---PKALSGGQRQRVAIGRTLVAEPSVFLL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 670 DEPTSGMDP---VSRRFTWDVLQKhKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11000 158 DEPLSNLDAalrVQMRIEISRLHK-RLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1342-1574 |
6.48e-15 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 76.59 E-value: 6.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1342 LNSIVLIKELIKVYFSKPVVLAVrniSVAIQKQECFGLLGLNGAGKTTTFE----ILTGEEVASS-----GDVFVERLSI 1412
Cdd:PRK09984 1 MQTIIRVEKLAKTFNQHQALHAV---DLNIHHGEMVALLGPSGSGKSTLLRhlsgLITGDKSAGShiellGRTVQREGRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1413 TKNILKVRSKIGYCPQFDALLDYMTAREIMIMYAR----------LWGIPETKINNYvkKSMEALNLESYADKYIYTYSG 1482
Cdd:PRK09984 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALgstpfwrtcfSWFTREQKQRAL--QALTRVGMVHFAHQRVSTLSG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1483 GNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRES-GKAIIITSHSMEECDALCTKLAIMVKGKFVCLG 1561
Cdd:PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNdGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
250
....*....|....
gi 1387244451 1562 SPQHLKN-KFGNVY 1574
Cdd:PRK09984 236 SSQQFDNeRFDHLY 249
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
513-722 |
6.58e-15 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 76.77 E-value: 6.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 513 IQHLYKEFTL----QNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMVQ 584
Cdd:TIGR02769 8 VTHTYRTGGLfgakQRAPVL--TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQldrkQRRA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 585 VRKSLGLCPQDDI----------------LFHHLTVSEhlyfycvikgvppEIQSKEINKMLISFGLIEKH-DALAKSLS 647
Cdd:TIGR02769 86 FRRDVQLVFQDSPsavnprmtvrqiigepLRHLTSLDE-------------SEQKARIAELLDMVGLRSEDaDKLPRQLS 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 648 GGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKE--NRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQafGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1342-1566 |
7.31e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 76.67 E-value: 7.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1342 LNSIVLIKELIKVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTG--EEVASSGDVFVERLSiTKNILKV 1419
Cdd:PRK13642 1 MNKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGlfEEFEGKVKIDGELLT-AENVWNL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1420 RSKIGYCPQF-DALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKP 1498
Cdd:PRK13642 80 RRKIGMVFQNpDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1499 SVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIIT-SHSMEECdALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSiTHDLDEA-ASSDRILVMKAGEIIKEAAPSEL 227
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1364-1564 |
9.53e-15 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 75.96 E-value: 9.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV----------ERLSITKNILkvrskigycPQFDALL 1433
Cdd:PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLngrpladwspAELARRRAVL---------PQHSSLS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1434 DYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALM------GKPSVIFLDEPS 1507
Cdd:PRK13548 89 FPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwepdGPPRWLLLDEPT 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1508 TGMDP--------VARRLlwnavtrTRESGKAIIITSHsmeecD----AL-CTKLAIMVKGKFVCLGSPQ 1564
Cdd:PRK13548 169 SALDLahqhhvlrLARQL-------AHERGLAVIVVLH-----DlnlaARyADRIVLLHQGRLVADGTPA 226
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1308-1545 |
1.03e-14 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 80.15 E-value: 1.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1308 KSNKDRV-SKELSGESEDEDVQNERNRILDNPQESLNSIVLIKEL---IKVYFSKPVVLavRNISVAIQKQECFGLLGLN 1383
Cdd:TIGR00956 721 ASNKNDIeAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLtyeVKIKKEKRVIL--NNVDGWVKPGTLTALMGAS 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1384 GAGKTTTFEILTGEE---VASSGDVFVERLSITKNIlkVRSkIGYCPQFDALLDYMTAREIMIMYARLW---GIPETKIN 1457
Cdd:TIGR00956 799 GAGKTTLLNVLAERVttgVITGGDRLVNGRPLDSSF--QRS-IGYVQQQDLHLPTSTVRESLRFSAYLRqpkSVSKSEKM 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1458 NYVKKSMEALNLESYADKYIYTYSGG----NKRRLSTAIALMGKP-SVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAI 1532
Cdd:TIGR00956 876 EYVEEVIKLLEMESYADAVVGVPGEGlnveQRKRLTIGVELVAKPkLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAI 955
|
250
....*....|....*...
gi 1387244451 1533 IITSHS-----MEECDAL 1545
Cdd:TIGR00956 956 LCTIHQpsailFEEFDRL 973
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
1364-1555 |
1.06e-14 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 75.19 E-value: 1.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKnilkvrskigycPQFD--------ALLDY 1435
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE------------PGPDrmvvfqnySLLPW 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1436 MTARE--IMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPV 1513
Cdd:TIGR01184 69 LTVREniALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1387244451 1514 ARRLLWNAVTRT-RESGKAIIITSHSMEECDALCTKLAIMVKG 1555
Cdd:TIGR01184 149 TRGNLQEELMQIwEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1359-1569 |
1.09e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 79.06 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1359 PVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSK--IGYCPQFDALLDYM 1436
Cdd:PRK09700 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQlgIGIIYQELSVIDEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TAREIM----IMYARLWGIPETKINNYVKKSMEAL---NLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTG 1509
Cdd:PRK09700 96 TVLENLyigrHLTKKVCGVNIIDWREMRVRAAMMLlrvGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1510 MDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKNK 1569
Cdd:PRK09700 176 LTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND 235
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1356-1566 |
1.28e-14 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 75.13 E-value: 1.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1356 FSKPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT---KNILKVRSKIGYCPQFDAL 1432
Cdd:PRK09493 11 FGPTQVL--HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNdpkVDERLIRQEAGMVFQQFYL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1433 LDYMTARE-IMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PRK09493 89 FPHLTALEnVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1512 PVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK09493 169 PELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
528-715 |
1.77e-14 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 75.59 E-value: 1.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 528 LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGL------YRpTSGKVYISG---YDISKDMVQVRKSLGLCPQDDIL 598
Cdd:PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLndlipgFR-VEGKVTFHGknlYAPDVDPVEVRRRIGMVFQKPNP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 599 FHHlTVSEHLYFYCVI---KGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSG 675
Cdd:PRK14243 103 FPK-SIYDNIAYGARIngyKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 676 MDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIA 715
Cdd:PRK14243 182 LDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTA 221
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1357-1552 |
1.97e-14 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 75.28 E-value: 1.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1357 SKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKnilkvrskigycP--------Q 1428
Cdd:COG4525 16 GGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG------------PgadrgvvfQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 FDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPST 1508
Cdd:COG4525 84 KDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFG 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1509 GMDPVARR-----LL--WnavtrtRESGKAIIITSHSMEECDALCTKLAIM 1552
Cdd:COG4525 164 ALDALTREqmqelLLdvW------QRTGKGVFLITHSVEEALFLATRLVVM 208
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
1364-1563 |
2.40e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 73.33 E-value: 2.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGE---EVaSSGDVFVERLSITKNILKVRSKIGycpqfdalldymtare 1440
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkyEV-TEGEILFKGEDITDLPPEERARLG---------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1441 IMIMYARLWGIPETKINNYVKksmeALNlesyadkyiYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWN 1520
Cdd:cd03217 79 IFLAFQYPPEIPGVKNADFLR----YVN---------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAE 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1387244451 1521 AVTRTRESGKAIIITSHSMEECDAL-CTKLAIMVKGKFVCLGSP 1563
Cdd:cd03217 146 VINKLREEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDK 189
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
510-736 |
3.01e-14 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 76.31 E-value: 3.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 510 GIRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTlSILTGLYRPTSGKVYISGYDISKDMVQVRKSL 589
Cdd:NF000106 13 AVEVRGLVKHFG----EVKAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGRRPWRF*TWCANRRALRRTI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLC-PQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVI 668
Cdd:NF000106 88 G*HrPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLY 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 669 LDEPTSGMDPVSRRFTWDVLQKH-KENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGSTIFLKKVYG 736
Cdd:NF000106 168 LDEPTTGLDPRTRNEVWDEVRSMvRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVG 236
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1364-1564 |
4.06e-14 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 74.28 E-value: 4.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSK-IGYCPQFDALLDYMTAREiM 1442
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARrLALLPQHHLTPEGITVRE-L 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1443 IMYAR-----LWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRL 1517
Cdd:PRK11231 97 VAYGRspwlsLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1387244451 1518 LWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQ 1564
Cdd:PRK11231 177 LMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPE 223
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1363-1561 |
5.05e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 74.15 E-value: 5.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKvrSKIGYCPQFDAL-LDYMTAREI 1441
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK--NLVAYVPQSEEVdWSFPVLVED 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYAR-----LWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARR 1516
Cdd:PRK15056 100 VVMMGRyghmgWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1387244451 1517 LLWNAVTRTRESGKAIIITSHSMEECDALCtKLAIMVKGKFVCLG 1561
Cdd:PRK15056 180 RIISLLRELRDEGKTMLVSTHNLGSVTEFC-DYTVMVKGTVLASG 223
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
1350-1564 |
5.99e-14 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 73.51 E-value: 5.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDV--------FVERLSiTKNILKVRS 1421
Cdd:COG4161 4 QLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLniaghqfdFSQKPS-EKAIRLLRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1422 KIGYCPQFDALLDYMTAREIMIMY-ARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSV 1500
Cdd:COG4161 83 KVGMVFQQYNLWPHLTVMENLIEApCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1501 IFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV------CLGSPQ 1564
Cdd:COG4161 163 LLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRIIeqgdasHFTQPQ 232
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
511-707 |
6.23e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 74.74 E-value: 6.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVL-AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMV------ 583
Cdd:PRK13651 3 IKVKNIVKIFNKKLPTELkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKtkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 584 -------------------QVRKSLGLCPQ--DDILFHHlTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHdaL 642
Cdd:PRK13651 83 vleklviqktrfkkikkikEIRRRVGVVFQfaEYQLFEQ-TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY--L 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 643 AKS---LSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEA 707
Cdd:PRK13651 160 QRSpfeLSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNlNKQGKTIILVTHDLDNV 228
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1378-1563 |
8.36e-14 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 73.50 E-value: 8.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1378 GLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERLSITKN-ILKVRSKIGYCPQF-DALLDYMTAREIMIMYARLWGIPE 1453
Cdd:PRK13638 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWqgKPLDYSKRgLLALRQQVATVFQDpEQQIFYTDIDSDIAFSLRNLGVPE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1454 TKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAII 1533
Cdd:PRK13638 111 AEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVI 190
|
170 180 190
....*....|....*....|....*....|
gi 1387244451 1534 ITSHSMEECDALCTKLAIMVKGKFVCLGSP 1563
Cdd:PRK13638 191 ISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
511-730 |
1.15e-13 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 72.76 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHL---YKEFtlqnmtvLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLY------RpTSGKVYISGYDI--- 578
Cdd:COG1117 12 IEVRNLnvyYGDK-------QALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNdlipgaR-VEGEILLDGEDIydp 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 579 SKDMVQVRKSLGLCPQ----------DDILFhhltvsehlyfycvikgvPPEIQ----SKEINKM----LISFGLIE--K 638
Cdd:COG1117 84 DVDVVELRRRVGMVFQkpnpfpksiyDNVAY------------------GLRLHgiksKSELDEIveesLRKAALWDevK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 639 H--DALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAI 716
Cdd:COG1117 146 DrlKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTHNMQQAARVSDYTAF 225
|
250
....*....|....*.
gi 1387244451 717 MAKGTLQCCGST--IF 730
Cdd:COG1117 226 FYLGELVEFGPTeqIF 241
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1345-1539 |
1.19e-13 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 72.33 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1345 IVLIKELIKvYFSKPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT---KNILKVRS 1421
Cdd:COG1126 1 MIEIENLHK-SFGDLEVL--KGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTdskKDINKLRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1422 KIGYCPQ-FdALLDYMTAREiMIMYA--RLWGIPETKInnyVKKSMEALN---LESYADKYIYTYSGGNKRRLSTAIALM 1495
Cdd:COG1126 78 KVGMVFQqF-NLFPHLTVLE-NVTLApiKVKKMSKAEA---EERAMELLErvgLADKADAYPAQLSGGQQQRVAIARALA 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1496 GKPSVIFLDEPSTGMDP--------VARRLlwnavtrtRESGKAIIITSHSM 1539
Cdd:COG1126 153 MEPKVMLFDEPTSALDPelvgevldVMRDL--------AKEGMTMVVVTHEM 196
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1363-1552 |
1.23e-13 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 72.08 E-value: 1.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV----ERLSITK----NILKVRSK-IGYCPQFdalL 1433
Cdd:COG4778 26 VLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrhdgGWVDLAQasprEILALRRRtIGYVSQF---L 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1434 DYM---TAREIMIMYARLWGIPETKINNYVKKSMEALNL-ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTG 1509
Cdd:COG4778 103 RVIprvSALDVVAEPLLERGVDREEARARARELLARLNLpERLWDLPPATFSGGEQQRVNIARGFIADPPLLLLDEPTAS 182
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1387244451 1510 MDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIM 1552
Cdd:COG4778 183 LDAANRAVVVELIEEAKARGTAIIGIFHDEEVREAVADRVVDV 225
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
529-720 |
1.24e-13 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 75.77 E-value: 1.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQ-VRKSLGLCPQDDILFHHlTVSEH 607
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAsLRRNIAVVFQDAGLFNR-SIEDN 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYfycvikgVPPEIQSKEinKMLISFGLIEKHDALAK--------------SLSGGMKRKLSIIIALIGGSKVVILDEPT 673
Cdd:PRK13657 429 IR-------VGRPDATDE--EMRAAAERAQAHDFIERkpdgydtvvgergrQLSGGERQRLAIARALLKDPPILILDEAT 499
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1387244451 674 SGMDPVSRRFTWDVLQKHKENRTVLLTTHHMD---EAdvlgDRIAIMAKG 720
Cdd:PRK13657 500 SALDVETEAKVKAALDELMKGRTTFIIAHRLStvrNA----DRILVFDNG 545
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1361-1558 |
1.24e-13 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 72.22 E-value: 1.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT--KNILKVRSKIGYCPQFDALLDYMTA 1438
Cdd:PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITdwQTAKIMREAVAIVPEGRRVFSRMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1439 REIMIMYArlWGIPETKINNYVKKSMEAL-NLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRL 1517
Cdd:PRK11614 98 EENLAMGG--FFAERDQFQERIKWVYELFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1387244451 1518 LWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:PRK11614 176 IFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
520-727 |
1.25e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 73.12 E-value: 1.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 520 FTLQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISG--YDISK-DMVQVRKSLGLCPQD- 595
Cdd:PRK13638 9 FRYQDEPVL--KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGkpLDYSKrGLLALRQQVATVFQDp 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 596 DILFHHLTVSEHLYFYCVIKGVPPEIQSKEINKMLIsfgLIE----KHDALaKSLSGGMKRKLSIIIALIGGSKVVILDE 671
Cdd:PRK13638 87 EQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT---LVDaqhfRHQPI-QCLSHGQKKRVAIAGALVLQARYLLLDE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 672 PTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:PRK13638 163 PTAGLDPAGRTQMIAIIRRiVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
1352-1556 |
1.29e-13 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 69.78 E-value: 1.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1352 IKVYFSKPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVfverlsitknILKVRSKIGYCPQFda 1431
Cdd:cd03221 6 LSKTYGGKLLL--KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV----------TWGSTVKIGYFEQL-- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1432 lldymtareimimyarlwgipetkinnyvkksmealnlesyadkyiytySGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:cd03221 72 -------------------------------------------------SGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1387244451 1512 PVARRLLWNAVTRTResgKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:cd03221 103 LESIEALEEALKEYP---GTVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
518-728 |
1.61e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 72.25 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 518 KEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYR-----PTSGKVYISGYDISK-DMVQVRKSLGL 591
Cdd:PRK14247 7 RDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElypeaRVSGEVYLDGQDIFKmDVIELRRRVQM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 592 CPQDDILFHHLTVSEH----LYFYCVIKGvPPEIQSK---EINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGS 664
Cdd:PRK14247 87 VFQIPNPIPNLSIFENvalgLKLNRLVKS-KKELQERvrwALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQP 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 665 KVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:PRK14247 166 EVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
529-742 |
2.15e-13 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 75.55 E-value: 2.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTVSEH 607
Cdd:TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDiDRHTLRQFINYLPQEPYIFSG-SILEN 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LyfycvIKGVPPEIQSKEINKML-----------ISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:TIGR01193 568 L-----LLGAKENVSQDEIWAACeiaeikddienMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNL 642
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 677 DPVSRRFTWDVLQKHKEnRTVLLTTHHMDEADvLGDRIAIMAKGTLQCCGSTIFLKKVYGVGYHLI 742
Cdd:TIGR01193 643 DTITEKKIVNNLLNLQD-KTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDRNGFYASLI 706
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
1379-1537 |
2.16e-13 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 76.04 E-value: 2.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1379 LLGLNGAGKTTTFEILTGEEVAS--SGDVfveRLSITKNILKVRSKI-GYCPQFDALLDYMTAREIMImYARLWGIP--- 1452
Cdd:PLN03140 911 LMGVSGAGKTTLMDVLAGRKTGGyiEGDI---RISGFPKKQETFARIsGYCEQNDIHSPQVTVRESLI-YSAFLRLPkev 986
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1453 --ETKINnYVKKSMEALNLESYADKY-----IYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRT 1525
Cdd:PLN03140 987 skEEKMM-FVDEVMELVELDNLKDAIvglpgVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065
|
170
....*....|..
gi 1387244451 1526 RESGKAIIITSH 1537
Cdd:PLN03140 1066 VDTGRTVVCTIH 1077
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
520-702 |
2.31e-13 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 75.06 E-value: 2.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 520 FTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDIL 598
Cdd:PRK11176 349 FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDyTLASLRNQVALVSQNVHL 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 599 FHHlTVSEHLYFYCVIKGVPPEIQskEINKMLISFGLIEKHD-AL-------AKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:PRK11176 429 FND-TIANNIAYARTEQYSREQIE--EAARMAYAMDFINKMDnGLdtvigenGVLLSGGQRQRIAIARALLRDSPILILD 505
|
170 180 190
....*....|....*....|....*....|..
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKENRTVLLTTH 702
Cdd:PRK11176 506 EATSALDTESERAIQAALDELQKNRTSLVIAH 537
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1359-1558 |
2.38e-13 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 74.67 E-value: 2.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1359 PVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERLSItKNILKVRSK-IGYCPQFDALLDY 1435
Cdd:COG1129 15 GGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLdgEPVRF-RSPRDAQAAgIAIIHQELNLVPN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1436 MTARE-IMI--MYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDP 1512
Cdd:COG1129 94 LSVAEnIFLgrEPRRGGLIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLILDEPTASLTE 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1387244451 1513 VARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:COG1129 174 REVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRLV 219
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
522-730 |
2.50e-13 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 71.65 E-value: 2.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 522 LQNMTVLA----VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRP----TSGKVYISGYDISKDMVQVRKSLGLCP 593
Cdd:PRK10418 7 LRNIALQAaqplVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPVAPCALRGRKIATIMQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 594 QDDILFHHL-TVSEHLYFYCVIKGVPPEIQSkeINKMLISFGLIEKHDAL---AKSLSGGMKRKLSIIIALIGGSKVVIL 669
Cdd:PRK10418 87 NPRSAFNPLhTMHTHARETCLALGKPADDAT--LTAALEAVGLENAARVLklyPFEMSGGMLQRMMIALALLCEAPFIIA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 670 DEPTSGMDPVSRRFTWDVLQKHKENRT--VLLTTHHMDEADVLGDRIAIMAKGTLQCCGS--TIF 730
Cdd:PRK10418 165 DEPTTDLDVVAQARILDLLESIVQKRAlgMLLVTHDMGVVARLADDVAVMSHGRIVEQGDveTLF 229
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1352-1564 |
2.67e-13 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 73.19 E-value: 2.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1352 IKVYFSKPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDV-F----VERLSItknilKVRsKIGYC 1426
Cdd:PRK10851 8 IKKSFGRTQVL--NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIrFhgtdVSRLHA-----RDR-KVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1427 PQFDALLDYMTAREiMIMYArLWGIPETK------INNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSV 1500
Cdd:PRK10851 80 FQHYALFRHMTVFD-NIAFG-LTVLPRRErpnaaaIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1501 IFLDEPSTGMDPVARRLLWNAVTRTRESGK--AIIITsHSMEECDALCTKLAIMVKGKFVCLGSPQ 1564
Cdd:PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKftSVFVT-HDQEEAMEVADRVVVMSQGNIEQAGTPD 222
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
527-722 |
2.79e-13 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 74.29 E-value: 2.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 527 VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLC--PQD---DILFHH 601
Cdd:COG3845 271 VPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGVAyiPEDrlgRGLVPD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 602 LTVSEHL---YFYCVIKGVPPEIQSKEINKMliSFGLIEKHD-------ALAKSLSGGMKRKLsiIIA--LIGGSKVVIL 669
Cdd:COG3845 351 MSVAENLilgRYRRPPFSRGGFLDRKAIRAF--AEELIEEFDvrtpgpdTPARSLSGGNQQKV--ILAreLSRDPKLLIA 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 670 DEPTSGMDPVSRRFTWDVLQKHKENRT-VLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:COG3845 427 AQPTRGLDVGAIEFIHQRLLELRDAGAaVLLISEDLDEILALSDRIAVMYEGRI 480
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1364-1556 |
3.29e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 74.05 E-value: 3.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERLSITKNILKVRSKIGYC----------PQFDA 1431
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLngKDISPRSPLDAVKKGMAYItesrrdngffPNFSI 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1432 LLDYMTAREIMIM-YARLWGI-PETKINNYVKKSMEALNLE-SYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPST 1508
Cdd:PRK09700 359 AQNMAISRSLKDGgYKGAMGLfHEVDEQRTAENQRELLALKcHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTR 438
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1387244451 1509 GMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:PRK09700 439 GIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGR 486
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
521-722 |
3.45e-13 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 74.32 E-value: 3.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 521 TLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQVRKSLGLC--PQDDIL 598
Cdd:PRK15439 270 TVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVylPEDRQS 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 599 fHHLTVSEHLYF--YCVIKGVPP-EIQSKEINKML--------ISFgliEKHDALAKSLSGGMKRKLSIIIALIGGSKVV 667
Cdd:PRK15439 350 -SGLYLDAPLAWnvCALTHNRRGfWIKPARENAVLeryrralnIKF---NHAEQAARTLSGGNQQKVLIAKCLEASPQLL 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 668 ILDEPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:PRK15439 426 IVDEPTRGVDVSARNDIYQLIRSiAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
529-723 |
3.70e-13 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 74.24 E-value: 3.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS-KDMVQVRKSLGLCPQDDILFHHLTVSEH 607
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTaEQPEDYRKLFSAVFTDFHLFDQLLGPEG 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 lyfycviKGVPPEIQSKEINKMLISFGL-IEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWD 686
Cdd:PRK10522 418 -------KPANPALVEKWLERLKMAHKLeLEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQ 490
|
170 180 190
....*....|....*....|....*....|....*....
gi 1387244451 687 VL--QKHKENRTVLLTTHHmDEADVLGDRIAIMAKGTLQ 723
Cdd:PRK10522 491 VLlpLLQEMGKTIFAISHD-DHYFIHADRLLEMRNGQLS 528
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1362-1566 |
4.16e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 71.58 E-value: 4.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1362 LAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT-KNILKVRSKIGYC---P--QFDAlldy 1435
Cdd:PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSeETVWDVRRQVGMVfqnPdnQFVG---- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1436 MTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVAR 1515
Cdd:PRK13635 97 ATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1516 RLLWNAVTRTRESGKAIIIT-SHSMEECdALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK13635 177 REVLETVRQLKEQKGITVLSiTHDLDEA-AQADRVIVMNKGEILEEGTPEEI 227
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1361-1558 |
4.27e-13 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 73.91 E-value: 4.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERLSITKNILKVRSKIGYCPQ-FdALLDYMT 1437
Cdd:COG3845 18 VVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIdgKPVRIRSPRDAIALGIGMVHQhF-MLVPNLT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1438 AREIMIMYA---RLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVA 1514
Cdd:COG3845 97 VAENIVLGLeptKGGRLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKALYRGARILILDEPTAVLTPQE 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1387244451 1515 RRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:COG3845 177 ADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKVV 220
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
511-702 |
4.98e-13 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 67.86 E-value: 4.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLykEFTLQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVyisgydiskdmvqvrkslg 590
Cdd:cd03221 1 IELENL--SKTYGGKLLL--KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 591 lcpqddilfhhltvsehlyfycvikgvppEIQSKeinkmlISFGLIEKhdalaksLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:cd03221 58 -----------------------------TWGST------VKIGYFEQ-------LSGGEKMRLALAKLLLENPNLLLLD 95
|
170 180 190
....*....|....*....|....*....|..
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKenRTVLLTTH 702
Cdd:cd03221 96 EPTNHLDLESIEALEEALKEYP--GTVILVSH 125
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
533-702 |
6.60e-13 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 69.49 E-value: 6.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 533 LSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQddiLFHHLTVSEHLYFY 611
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRgDRSRFMAYLGHLPG---LKADLSTLENLHFL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 612 CVIKGVPPeiQSKEINKMLIsFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKH 691
Cdd:PRK13543 107 CGLHGRRA--KQMPGSALAI-VGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183
|
170
....*....|..
gi 1387244451 692 -KENRTVLLTTH 702
Cdd:PRK13543 184 lRGGGAALVTTH 195
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1362-1568 |
6.78e-13 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 70.40 E-value: 6.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1362 LAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVF-------------VERLSITKNILKVRskigycpq 1428
Cdd:PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILlrgqhieglpghqIARMGVVRTFQHVR-------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 fdaLLDYMTARE-IMIMYAR------LWGIPETKinNYVKKSMEAL----------NLESYADKYIYTYSGGNKRRLSTA 1491
Cdd:PRK11300 91 ---LFREMTVIEnLLVAQHQqlktglFSGLLKTP--AFRRAESEALdraatwlervGLLEHANRQAGNLAYGQQRRLEIA 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1492 IALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTR-ESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRnEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1355-1555 |
9.49e-13 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 70.11 E-value: 9.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1355 YFSKPvvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGdvfverlSITKNILKVR---SKIGYCPQFDA 1431
Cdd:PRK11248 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG-------SITLDGKPVEgpgAERGVVFQNEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1432 LLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1387244451 1512 PVARRLLWNAVTRT-RESGKAIIITSHSMEECDALCTKLAIMVKG 1555
Cdd:PRK11248 161 AFTREQMQTLLLKLwQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
532-718 |
1.03e-12 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 70.18 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 532 DLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMVQVRKSLGLCPQDDILFHHLTVSEH 607
Cdd:PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAmsrsRLYTVRKRMSMLFQSGALFTDMNVFDN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFYCVIKG-VPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVsrrfTWD 686
Cdd:PRK11831 105 VAYPLREHTqLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPI----TMG 180
|
170 180 190
....*....|....*....|....*....|....*...
gi 1387244451 687 VLQK------HKENRTVLLTTHHMDEADVLGDRIAIMA 718
Cdd:PRK11831 181 VLVKliselnSALGVTCVVVSHDVPEVLSIADHAYIVA 218
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1364-1511 |
1.05e-12 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 69.46 E-value: 1.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK----NILKVRS-KIGYCPQFDALLDYMTA 1438
Cdd:PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKlssaAKAELRNqKLGFIYQFHHLLPDFTA 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 1439 REIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PRK11629 105 LENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
530-735 |
1.14e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 69.87 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYR-----PTSGKVYISGYDI-SKDM--VQVRKSLGLCPQDDILFHH 601
Cdd:PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElneeaRVEGEVRLFGRNIySPDVdpIEVRREVGMVFQYPNPFPH 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 602 LTVSEHLYFYCVIKGVppeIQSKEINKMLISFGLieKHDAL-----------AKSLSGGMKRKLSIIIALIGGSKVVILD 670
Cdd:PRK14267 100 LTIYDNVAIGVKLNGL---VKSKKELDERVEWAL--KKAALwdevkdrlndyPSNLSGGQRQRLVIARALAMKPKILLMD 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 671 EPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGSTiflKKVY 735
Cdd:PRK14267 175 EPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT---RKVF 236
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
540-680 |
1.18e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 72.99 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 540 GQITVLLGHNGAGKTTTLSILTGLYRPTS--GKVYISGYDISKdmvQVRKSLGLCPQDDILFHHLTVSEHLYFyCVIKGV 617
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTK---QILKRTGFVTQDDILYPHLTVRETLVF-CSLLRL 169
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 618 PPEIQSKEinKMLISFGLIEK-----------HDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS 680
Cdd:PLN03211 170 PKSLTKQE--KILVAESVISElgltkcentiiGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA 241
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
1363-1566 |
1.72e-12 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 72.11 E-value: 1.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK-VRSKIGYCPQfDALLDYMTAREi 1441
Cdd:COG4987 350 VLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDdLRRRIAVVPQ-RPHLFDTTLRE- 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYAR-------LWgipetkinnyvkKSMEALNLESYADKYIYTY-----------SGGNKRRLSTAIALMGKPSVIFL 1503
Cdd:COG4987 428 NLRLARpdatdeeLW------------AALERVGLGDWLAALPDGLdtwlgeggrrlSGGERRRLALARALLRDAPILLL 495
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1504 DEPSTGMDPVARRLLWNAVTRTREsGKAIIITSH---SMEECDALCtklaIMVKGKFVCLGSPQHL 1566
Cdd:COG4987 496 DEPTEGLDAATEQALLADLLEALA-GRTVLLITHrlaGLERMDRIL----VLEDGRIVEQGTHEEL 556
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
514-728 |
1.73e-12 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 68.84 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 514 QHLYKEFTLQnmtvlaVQDlslnlyeGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKdMVQVRKSLGLCP 593
Cdd:PRK10771 12 HHLPMRFDLT------VER-------GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTT-TPPSRRPVSMLF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 594 QDDILFHHLTVSEHLYFycvikGVPPEI-----QSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVI 668
Cdd:PRK10771 78 QENNLFSHLTVAQNIGL-----GLNPGLklnaaQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 669 LDEPTSGMDPVSRRFTWDVLQKHKENR--TVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:PRK10771 153 LDEPFSALDPALRQEMLTLVSQVCQERqlTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPT 214
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1366-1558 |
1.74e-12 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 69.45 E-value: 1.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1366 NISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK----NILKVRSKIGYCPQ--FDALLDYMTAR 1439
Cdd:TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQldrkQRRAFRRDVQLVFQdsPSAVNPRMTVR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1440 EIMIMYAR-LWGIPETKINNYVKKSMEALNLES-YADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRL 1517
Cdd:TIGR02769 109 QIIGEPLRhLTSLDESEQKARIAELLDMVGLRSeDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1387244451 1518 LWNAVTRTR-ESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:TIGR02769 189 ILELLRKLQqAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1359-1558 |
1.94e-12 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 71.87 E-value: 1.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1359 PVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVE---------RLSITKNILKVRSKIGYCPQf 1429
Cdd:PRK11288 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDgqemrfastTAALAAGVAIIYQELHLVPE- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1430 dalldyMT-AREIMI--MYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:PRK11288 94 ------MTvAENLYLgqLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEP 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1507 STGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:PRK11288 168 TSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1363-1570 |
1.98e-12 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 71.76 E-value: 1.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTG--EEVASSGDVfVERLSITKNILKVR--SKIGY-CPQ--------- 1428
Cdd:TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdQYEPTSGRI-IYHVALCEKCGYVErpSKVGEpCPVcggtlepee 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 -----FDALLDYMTAREIMIMYAR---LWGiPETKINNyVKKSMEALNLEsyADKYIYT--------------------Y 1480
Cdd:TIGR03269 94 vdfwnLSDKLRRRIRKRIAIMLQRtfaLYG-DDTVLDN-VLEALEEIGYE--GKEAVGRavdliemvqlshrithiardL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1481 SGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVC 1559
Cdd:TIGR03269 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEaVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249
|
250
....*....|.
gi 1387244451 1560 LGSPQHLKNKF 1570
Cdd:TIGR03269 250 EGTPDEVVAVF 260
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
520-722 |
2.28e-12 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 71.59 E-value: 2.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 520 FTLQNMTVL-AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISG--YDIS--KDMVqvRKSLGLCPQ 594
Cdd:COG1129 257 LEVEGLSVGgVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGkpVRIRspRDAI--RAGIAYVPE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 595 D---DILFHHLTVSEHLYFycvikgvppEIQSKEINKMLISFGLIEKH---------------DALAKSLSGGMKRKlsI 656
Cdd:COG1129 335 DrkgEGLVLDLSIRENITL---------ASLDRLSRGGLLDRRRERALaeeyikrlriktpspEQPVGNLSGGNQQK--V 403
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 657 IIA--LIGGSKVVILDEPTSGMDpVS---------RRFTwdvlqkhKENRTVLLTTHHMDEadVLG--DRIAIMAKGTL 722
Cdd:COG1129 404 VLAkwLATDPKVLILDEPTRGID-VGakaeiyrliRELA-------AEGKAVIVISSELPE--LLGlsDRILVMREGRI 472
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1365-1557 |
2.60e-12 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 71.24 E-value: 2.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIG--YCPQ--------FDALLD 1434
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGlvYLPEdrqssglyLDAPLA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1435 YMTAReimIMYARL-WGIPETKINNYVKKSMEALNLE-SYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDP 1512
Cdd:PRK15439 360 WNVCA---LTHNRRgFWIKPARENAVLERYRRALNIKfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1387244451 1513 VARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKF 1557
Cdd:PRK15439 437 SARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
533-723 |
2.86e-12 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 68.84 E-value: 2.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 533 LSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS--------------KDMVQVRKSLGLCPQDDIL 598
Cdd:PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlkvadkNQLRLLRTRLTMVFQHFNL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 599 FHHLTVSEHLYFYCV-IKGVPPEIQSKEINKMLISFGLIEK-HDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:PRK10619 104 WSHMTVLENVMEAPIqVLGLSKQEARERAVKYLAKVGIDERaQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1387244451 677 DPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQ 723
Cdd:PRK10619 184 DPELVGEVLRIMQQlAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
197-452 |
3.07e-12 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 70.11 E-value: 3.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 197 LVQHALDKAIIVYHNGRAAEMLFA-NVNIFVSRFPYPTYYKDNFFLSFLslFPLAVLLIFSLTELTLIRTIVMEKETRLK 275
Cdd:pfam12698 115 LILNALQSLLQQLNASALVLLLEAlSTSAPIPVESTPLFNPQSGYAYYL--VGLILMIIILIGAAIIAVSIVEEKESRIK 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 276 EYQFMIGLSNGMLWASYFVTFLLMFLIIVCILCVVLFVKIVPVvvlqnSDPSLIFVFFLCFVVATITFGFLITTFFDKTS 355
Cdd:pfam12698 193 ERLLVSGVSPLQYWLGKILGDFLVGLLQLLIILLLLFGIGIPF-----GNLGLLLLLFLLYGLAYIALGYLLGSLFKNSE 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 356 LAVSIGGFLFFLTFFPFVVVITMYGMLSRTGKLAScLLSNIAVALGITTISkleikeYGAKWNNFLSrvspddeltlahI 435
Cdd:pfam12698 268 DAQSIIGIVILLLSGFFGGLFPLEDPPSFLQWIFS-IIPFFSPIDGLLRLI------YGDSLWEIAP------------S 328
|
250
....*....|....*..
gi 1387244451 436 MGMLLFDAFLYGLLAWY 452
Cdd:pfam12698 329 LIILLLFAVVLLLLALL 345
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
507-715 |
6.03e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 67.75 E-value: 6.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 507 LIAGIRIQHLYKEFTLQNMtvlaVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTS-----GKVYISGYDISKD 581
Cdd:PRK14258 4 LIPAIKVNNLSFYYDTQKI----LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIYER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 582 MVQV---RKSLGLCPQDDILFHhLTVSEHLYFYCVIKGVPPEIQSKEINKMLISFGLI--EKHDALAKS---LSGGMKRK 653
Cdd:PRK14258 80 RVNLnrlRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLwdEIKHKIHKSaldLSGGQQQR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 654 LSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKH--KENRTVLLTTHHMDEADVLGDRIA 715
Cdd:PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLrlRSELTMVIVSHNLHQVSRLSDFTA 222
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1343-1572 |
6.67e-12 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 67.69 E-value: 6.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1343 NSIVLIKELIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVErlsiTKNILKVRSK 1422
Cdd:PRK10619 3 ENKLNVIDLHKRYGEHEVL---KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN----GQTINLVRDK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1423 IGYCPQFDA-LLDYMTAREIMIM-YARLWGIpETKINNYVKKSMEALNL-------------------ESYADKYIYTYS 1481
Cdd:PRK10619 76 DGQLKVADKnQLRLLRTRLTMVFqHFNLWSH-MTVLENVMEAPIQVLGLskqeareravkylakvgidERAQGKYPVHLS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1482 GGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLG 1561
Cdd:PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234
|
250
....*....|.
gi 1387244451 1562 SPQHLknkFGN 1572
Cdd:PRK10619 235 APEQL---FGN 242
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1365-1538 |
9.30e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 66.05 E-value: 9.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITknILKVRSKIGYCPQFDALLDYMTAREIMIM 1444
Cdd:PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID--DPDVAEACHYLGHRNAMKPALTVAENLEF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1445 YARLWGIPETKInnyvKKSMEALNLESYAD---KYIytySGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNA 1521
Cdd:PRK13539 97 WAAFLGGEELDI----AAALEAVGLAPLAHlpfGYL---SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAEL 169
|
170
....*....|....*..
gi 1387244451 1522 VTRTRESGKAIIITSHS 1538
Cdd:PRK13539 170 IRAHLAQGGIVIAATHI 186
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1350-1537 |
1.04e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 65.74 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCPQF 1429
Cdd:PRK13540 3 DVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1430 DALLDYMTAREIMimyarLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTG 1509
Cdd:PRK13540 83 SGINPYLTLRENC-----LYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157
|
170 180
....*....|....*....|....*...
gi 1387244451 1510 MDPVARRLLWNAVTRTRESGKAIIITSH 1537
Cdd:PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSH 185
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
521-702 |
1.25e-11 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 66.68 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 521 TLQNMTV-----LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVyisgydisKDMVQVRksLGLCPQ- 594
Cdd:PRK09544 6 SLENVSVsfgqrRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--------KRNGKLR--IGYVPQk 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 595 ---DDILfhHLTVSEHLYFYcvikgvpPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDE 671
Cdd:PRK09544 76 lylDTTL--PLTVNRFLRLR-------PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146
|
170 180 190
....*....|....*....|....*....|...
gi 1387244451 672 PTSGMDPVSRRFTWDVLQ--KHKENRTVLLTTH 702
Cdd:PRK09544 147 PTQGVDVNGQVALYDLIDqlRRELDCAVLMVSH 179
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
536-714 |
1.26e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 66.66 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 536 NLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDmvqvrkslglcPQDDILFHHLTVSEHLYFYCVIK 615
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-----------PQYIKADYEGTVRDLLSSITKDF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 616 GVPPEIQSKEINKMlisfGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKEN- 694
Cdd:cd03237 90 YTHPYFKTEIAKPL----QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENn 165
|
170 180
....*....|....*....|.
gi 1387244451 695 -RTVLLTTHHMDEADVLGDRI 714
Cdd:cd03237 166 eKTAFVVEHDIIMIDYLADRL 186
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
529-720 |
1.41e-11 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 65.51 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTtlsILTGLYR---PTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTV 604
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKST---LILALFRfleAEEGKIEIDGIDISTiPLEDLRSSLTIIPQDPTLFSG-TI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHLYFYcvikgvpPEIQSKEINKML-ISFGliekhdalAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRF 683
Cdd:cd03369 99 RSNLDPF-------DEYSDEEIYGALrVSEG--------GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
|
170 180 190
....*....|....*....|....*....|....*...
gi 1387244451 684 TWDVLQKHKENRTVLLTTHHMDE-ADVlgDRIAIMAKG 720
Cdd:cd03369 164 IQKTIREEFTNSTILTIAHRLRTiIDY--DKILVMDAG 199
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
1363-1537 |
1.44e-11 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 65.46 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCPQFDALLDYMTAREIM 1442
Cdd:TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKPELSALENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1443 IMYARLWGIPETKINNyvkkSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAV 1522
Cdd:TIGR01189 95 HFWAAIHGGAQRTIED----ALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAGLL 170
|
170
....*....|....*
gi 1387244451 1523 TRTRESGKAIIITSH 1537
Cdd:TIGR01189 171 RAHLARGGIVLLTTH 185
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
1362-1558 |
2.06e-11 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 64.26 E-value: 2.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1362 LAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCPQFDALLDymtarei 1441
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 mimyarlwgipeTKINNYVKKSmealnlesyadkyiytYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNA 1521
Cdd:cd03247 89 ------------TTLRNNLGRR----------------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140
|
170 180 190
....*....|....*....|....*....|....*....
gi 1387244451 1522 VTRTRESGKAIIITSH--SMEECDALCtklaIMVKGKFV 1558
Cdd:cd03247 141 IFEVLKDKTLIWITHHltGIEHMDKIL----FLENGKII 175
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
1358-1564 |
3.44e-11 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 67.85 E-value: 3.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1358 KPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVfveRL------SITKNILkvRSKIGYCPQ--- 1428
Cdd:COG4618 345 RPIL---RGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSV---RLdgadlsQWDREEL--GRHIGYLPQdve 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 -FD-------ALLDYMTAREImIMYARLWGI-------P---ETKInnyvkkSMEALNLesyadkyiytySGGNKRRLST 1490
Cdd:COG4618 417 lFDgtiaeniARFGDADPEKV-VAAAKLAGVhemilrlPdgyDTRI------GEGGARL-----------SGGQRQRIGL 478
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 1491 AIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHS---MEECDalctKLAIMVKGKFVCLGSPQ 1564
Cdd:COG4618 479 ARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRpslLAAVD----KLLVLRDGRVQAFGPRD 551
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
513-720 |
4.44e-11 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 65.48 E-value: 4.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 513 IQHLYKEFTL----QNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMVQ 584
Cdd:PRK10419 9 LSHHYAHGGLsgkhQHQTVL--NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlnraQRKA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 585 VRKSLGLCPQDDI----------------LFHHLTVSEhlyfycvikgvppEIQSKEINKMLISFGLIEKH-DALAKSLS 647
Cdd:PRK10419 87 FRRDIQMVFQDSIsavnprktvreiirepLRHLLSLDK-------------AERLARASEMLRAVDLDDSVlDKRPPQLS 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 648 GGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKlqQQFGTACLFITHDLRLVERFCQRVMVMDNG 228
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
1363-1566 |
4.62e-11 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 67.48 E-value: 4.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK-VRSKIGYCPQfDALLDYMTAREI 1441
Cdd:COG4988 352 ALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPAsWRRQIAWVPQ-NPYLFAGTIREN 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYARlwGIPETKInnyvkksMEALNLeSYADKYIYTY---------------SGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:COG4988 431 LRLGRP--DASDEEL-------EAALEA-AGLDEFVAALpdgldtplgeggrglSGGQAQRLALARALLRDAPLLLLDEP 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1507 STGMDPVARRLLWNAVTRTREsGKAIIITSHSMEECdALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:COG4988 501 TAHLDAETEAEILQALRRLAK-GRTVILITHRLALL-AQADRILVLDDGRIVEQGTHEEL 558
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
1371-1537 |
4.83e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 67.53 E-value: 4.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1371 IQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVErlsitknilkvrSKIGYCPQfdalldYMTAREIMIMYARLWG 1450
Cdd:PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------LKISYKPQ------YIKPDYDGTVEDLLRS 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1451 IPETKINNYVKKS-MEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDpVARRLlwnAVTR----- 1524
Cdd:PRK13409 424 ITDDLGSSYYKSEiIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD-VEQRL---AVAKairri 499
|
170
....*....|...
gi 1387244451 1525 TRESGKAIIITSH 1537
Cdd:PRK13409 500 AEEREATALVVDH 512
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
519-722 |
5.21e-11 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 67.56 E-value: 5.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 519 EFTLQNMTVLAVQD------LSLNLYEGQITVLLGHNGAGKTTTLSILTGlYRPTSGKVYISGYDISK-DMVQVRKSLGL 591
Cdd:PRK11174 349 TIEAEDLEILSPDGktlagpLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRElDPESWRKHLSW 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 592 CPQDDILFHHlTVSEHLYFycvikgVPPEIQSKEINKMLISFGLIEKHDALAK-----------SLSGGMKRKLSIIIAL 660
Cdd:PRK11174 428 VGQNPQLPHG-TLRDNVLL------GNPDASDEQLQQALENAWVSEFLPLLPQgldtpigdqaaGLSVGQAQRLALARAL 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 661 IGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMDE-ADVlgDRIAIMAKGTL 722
Cdd:PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDlAQW--DQIWVMQDGQI 561
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
531-677 |
7.41e-11 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 64.62 E-value: 7.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 531 QDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHLTVSEhly 609
Cdd:PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHyASKEVARRIGLLAQNATTPGDITVQE--- 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 610 fyCVIKGVPP---------EIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMD 677
Cdd:PRK10253 101 --LVARGRYPhqplftrwrKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1371-1524 |
7.98e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 64.35 E-value: 7.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1371 IQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVErlsitknilkvRSKIGYCPQfdalldYMTAREIMIMYARLWG 1450
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE-----------LDTVSYKPQ------YIKADYEGTVRDLLSS 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1451 I-PETKINNYVKKS-MEALNLESYADKYIYTYSGGNKRRlsTAIAL-MGKPSVIFL-DEPSTGMDpVARRLLWNAVTR 1524
Cdd:cd03237 85 ItKDFYTHPYFKTEiAKPLQIEQILDREVPELSGGELQR--VAIAAcLSKDADIYLlDEPSAYLD-VEQRLMASKVIR 159
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1364-1564 |
8.25e-11 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 66.02 E-value: 8.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSK-IGYCPQFDALLDYMTAREIM 1442
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRrVASVPQDTSLSFEFDVRQVV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1443 IM-----YARLWGIPETKiNNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD------ 1511
Cdd:PRK09536 99 EMgrtphRSRFDTWTETD-RAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDinhqvr 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1512 --PVARRLLwnavtrtrESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQ 1564
Cdd:PRK09536 178 tlELVRRLV--------DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA 224
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
530-726 |
9.50e-11 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 66.02 E-value: 9.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI-SKDMVQVRKSLGLCPQDDILFHHLTVSEhl 608
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVeALSARAASRRVASVPQDTSLSFEFDVRQ-- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 609 yfyCVIKGVPP---------EIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPV 679
Cdd:PRK09536 97 ---VVEMGRTPhrsrfdtwtETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1387244451 680 SRRFTWDVLQKHKEN-RTVLLTTHHMDEADVLGDRIAIMAKGTLQCCG 726
Cdd:PRK09536 174 HQVRTLELVRRLVDDgKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1344-1565 |
1.06e-10 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 64.00 E-value: 1.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1344 SIVLIKELIKvYFSKPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKN-------- 1415
Cdd:PRK11264 2 SAIEVKNLVK-KFHGQTVL--HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTArslsqqkg 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1416 -ILKVRSKIGYCPQFDALLDYMTARE-IMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIA 1493
Cdd:PRK11264 79 lIRQLRQHVGFVFQNFNLFPHRTVLEnIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1494 LMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLG-------SPQH 1565
Cdd:PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGpakalfaDPQQ 237
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
1365-1563 |
1.12e-10 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 63.55 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTG---EEVaSSGDVFVERLSITKniLKV--RSK--IGYCPQ--------- 1428
Cdd:COG0396 17 KGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGhpkYEV-TSGSILLDGEDILE--LSPdeRARagIFLAFQypveipgvs 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 -FDALLDYMTAREIMIMYARLWgipetkiNNYVKKSMEALNL-ESYADKYI-YTYSGGNKRRLSTAIALMGKPSVIFLDE 1505
Cdd:COG0396 94 vSNFLRTALNARRGEELSAREF-------LKLLKEKMKELGLdEDFLDRYVnEGFSGGEKKRNEILQMLLLEPKLAILDE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1506 PSTGMDPVARRLLWNAVTRTRESGKAIIITSHS---MEECDAlcTKLAIMVKGKFVCLGSP 1563
Cdd:COG0396 167 TDSGLDIDALRIVAEGVNKLRSPDRGILIITHYqriLDYIKP--DFVHVLVDGRIVKSGGK 225
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
523-723 |
1.27e-10 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 64.07 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 523 QNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydiskDMVQVRKSLGLCPQddilfhhL 602
Cdd:PRK13546 33 KNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAISAGLSGQ-------L 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 603 TVSEHLYFYCVIKGVPPEiQSKEINKMLISFG-LIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR 681
Cdd:PRK13546 101 TGIENIEFKMLCMGFKRK-EIKAMTPKIIEFSeLGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFA 179
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1387244451 682 RFTWDVLQKHKE-NRTVLLTTHHMDEADVLGDRIAIMAKGTLQ 723
Cdd:PRK13546 180 QKCLDKIYEFKEqNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK 222
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
1354-1566 |
1.62e-10 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 63.01 E-value: 1.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1354 VYFS-KPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIGYCPQFDA 1431
Cdd:cd03254 8 VNFSyDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDiSRKSLRSMIGVVLQDTF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1432 LLdymtAREIM--IMYARLwGIPETKINNYVKKSMEALNLESYADKYiYTY--------SGGNKRRLSTAIALMGKPSVI 1501
Cdd:cd03254 88 LF----SGTIMenIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGY-DTVlgenggnlSQGERQLLAIARAMLRDPKIL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1502 FLDEPSTGMDPVARRLLWNAVTRTREsGKAIIITSH---SMEECDalctKLAIMVKGKFVCLGSPQHL 1566
Cdd:cd03254 162 ILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHrlsTIKNAD----KILVLDDGKIIEEGTHDEL 224
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
1364-1576 |
1.71e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 63.53 E-value: 1.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILT------GEEVASSGDVFVERLSITK-NILKVRSKIGYCPQFDALLDYM 1436
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNrlieiyDSKIKVDGKVLYFGKDIFQiDAIKLRKEVGMVFQQPNPFPHL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TAREIMIMYARLWGIPETK-INNYVKKSMEALNLESYADKYIYT----YSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PRK14246 106 SIYDNIAYPLKSHGIKEKReIKKIVEECLRKVGLWKEVYDRLNSpasqLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1512 PVARRLLWNAVTRTRESgKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL----KNKFGNVYIL 1576
Cdd:PRK14246 186 IVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIftspKNELTEKYVI 253
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1350-1568 |
1.78e-10 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 63.63 E-value: 1.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK----NILKVRSKIGY 1425
Cdd:PRK11831 9 DMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAmsrsRLYTVRKRMSM 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQFDALLDYMTA--------REimimYARLwgiPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRR--LSTAIALm 1495
Cdd:PRK11831 89 LFQSGALFTDMNVfdnvayplRE----HTQL---PAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRaaLARAIAL- 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1496 gKPSVIFLDEPSTGMDPVARRLLWNAVTRTRES-GKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:PRK11831 161 -EPDLIMFDEPFVGQDPITMGVLVKLISELNSAlGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
527-673 |
1.90e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 65.41 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 527 VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS----KDMVQVrkSLGLCPQDDILFHHL 602
Cdd:PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfngpKSSQEA--GIGIIHQELNLIPQL 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 603 TVSEHLYFYCVIKGVPPEIQSKEIN----KMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPT 673
Cdd:PRK10762 95 TIAENIFLGREFVNRFGRIDWKKMYaeadKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
526-720 |
2.16e-10 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 63.16 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 526 TVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVyISGydiSKDMVQVRKSLGLCPQDDILfhhltvs 605
Cdd:PRK11247 26 TVL--NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAG---TAPLAEAREDTRLMFQDARL------- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 606 ehLYFYCVIKGVPPEIQSK---EINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRR 682
Cdd:PRK11247 93 --LPWKKVIDNVGLGLKGQwrdAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1387244451 683 FTWDVL----QKHkeNRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11247 171 EMQDLIeslwQQH--GFTVLLVTHDVSEAVAMADRVLLIEEG 210
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
529-728 |
2.31e-10 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 63.36 E-value: 2.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMvqvRKSL-GLCPQD---DILFHHLT- 603
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQAL---QKNLvAYVPQSeevDWSFPVLVe 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 604 --VSEHLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR 681
Cdd:PRK15056 99 dvVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1387244451 682 RFTWDVLQKHK-ENRTVLLTTHHMDEADVLGDrIAIMAKGTLQCCGST 728
Cdd:PRK15056 179 ARIISLLRELRdEGKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPT 225
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1352-1561 |
2.96e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 62.55 E-value: 2.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1352 IKVYFSKPVVLavRNISVAIQKQECFGLLGLNGAGKTT---TFEILT--GEEVASSGDVFVERLSITK---NILKVRSKI 1423
Cdd:PRK14267 10 LRVYYGSNHVI--KGVDLKIPQNGVFALMGPSGCGKSTllrTFNRLLelNEEARVEGEVRLFGRNIYSpdvDPIEVRREV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1424 GYCPQFDALLDYMTAREIMIMYARLWGI--PETKINNYVKKSMEALNL-ESYADK---YIYTYSGGNKRRLSTAIALMGK 1497
Cdd:PRK14267 88 GMVFQYPNPFPHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALwDEVKDRlndYPSNLSGGQRQRLVIARALAMK 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1498 PSVIFLDEPSTGMDPVARRLLWNAVTRTRESgKAIIITSHSMEECDALCTKLAIMVKGKFVCLG 1561
Cdd:PRK14267 168 PKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
542-722 |
3.40e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 62.81 E-value: 3.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 542 ITVLLGHNGAGKTTTLSILTGL------YRpTSGKVYISGYDI--SKDMVQVRKSLGLCPQDDILFHHLTVSEHLYFYCV 613
Cdd:PRK14271 49 VTSLMGPTGSGKTTFLRTLNRMndkvsgYR-YSGDVLLGGRSIfnYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRA 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 614 IKGVPPEIQSKEINKMLISFGLIEK-HDALAKS---LSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQ 689
Cdd:PRK14271 128 HKLVPRKEFRGVAQARLTEVGLWDAvKDRLSDSpfrLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIR 207
|
170 180 190
....*....|....*....|....*....|...
gi 1387244451 690 KHKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:PRK14271 208 SLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
540-743 |
3.89e-10 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 65.13 E-value: 3.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 540 GQITVLLGHNGAGKTTTLSILTGlyRPTSGkvYISGYDIskdMVQVRK-------SLGLCPQDDILFHHLTVSEHLYFYC 612
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLNVLAE--RVTTG--VITGGDR---LVNGRPldssfqrSIGYVQQQDLHLPTSTVRESLRFSA 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 613 VIKgVPPEIQSKE----INKMLISFGLIEKHDAL----AKSLSGGMKRKLSIIIALIGGSKVVI-LDEPTSGMDPVSRRF 683
Cdd:TIGR00956 862 YLR-QPKSVSKSEkmeyVEEVIKLLEMESYADAVvgvpGEGLNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLDSQTAWS 940
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 684 TWDVLQKHKENRTVLLTTHHMDEADVLG--DRIAIMAKGtlqccGSTIFLKKVyGVGYHLII 743
Cdd:TIGR00956 941 ICKLMRKLADHGQAILCTIHQPSAILFEefDRLLLLQKG-----GQTVYFGDL-GENSHTII 996
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
1375-1537 |
4.29e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 64.52 E-value: 4.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1375 ECFGLLGLNGAGKTTTFEILTGEEVASS--GDVFVERLSITKNILKvrsKIGYCPQFDALLDYMTAREIMIMYARLwgip 1452
Cdd:PLN03211 95 EILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTKQILK---RTGFVTQDDILYPHLTVRETLVFCSLL---- 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1453 etKINNYVKKSMEALNLESY--------------ADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLL 1518
Cdd:PLN03211 168 --RLPKSLTKQEKILVAESViselgltkcentiiGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRL 245
|
170
....*....|....*....
gi 1387244451 1519 WNAVTRTRESGKAIIITSH 1537
Cdd:PLN03211 246 VLTLGSLAQKGKTIVTSMH 264
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1343-1577 |
4.42e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 62.51 E-value: 4.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1343 NSIVLIKELIKVYFSKPVVlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTG---EEVASSGDVFVERLSIT-KNILK 1418
Cdd:PRK13640 3 DNIVEFKHVSFTYPDSKKP-ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGlllPDDNPNSKITVDGITLTaKTVWD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1419 VRSKIGYCPQF-DALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGK 1497
Cdd:PRK13640 82 IREKVGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1498 PSVIFLDEPSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECdALCTKLAIMVKGKFVCLGSPQHLknkFGNVYIL 1576
Cdd:PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKlKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEI---FSKVEML 237
|
.
gi 1387244451 1577 K 1577
Cdd:PRK13640 238 K 238
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
532-720 |
4.53e-10 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 62.16 E-value: 4.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 532 DLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKV-YISGYDISKDMVQV---------RKSLGLCPQDDILFHH 601
Cdd:TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAtYIMRSGAELELYQLseaerrrlmRTEWGFVHQNPRDGLR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 602 LTVS------EHLY-----FYCVIKGVPPE-IQSKEINKMLIsfgliekhDALAKSLSGGMKRKLSIIIALIGGSKVVIL 669
Cdd:TIGR02323 101 MRVSaganigERLMaigarHYGNIRATAQDwLEEVEIDPTRI--------DDLPRAFSGGMQQRLQIARNLVTRPRLVFM 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 670 DEPTSGMD-PVSRRFTwDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:TIGR02323 173 DEPTGGLDvSVQARLL-DLLRGlvRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
1379-1537 |
4.57e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 60.97 E-value: 4.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1379 LLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYCPQFDALLDYMTAREIMIMYARLWGipetkiNN 1458
Cdd:cd03231 31 VTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHS------DE 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1459 YVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSH 1537
Cdd:cd03231 105 QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1365-1540 |
4.70e-10 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 61.68 E-value: 4.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK----NILKVRS-KIGYCPQFDALLDYMTAR 1439
Cdd:COG4181 29 KGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFAldedARARLRArHVGFVFQSFQLLPTLTAL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1440 EIMIMYARLWGIPETKinnyvKKSMEALN---LESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARR 1516
Cdd:COG4181 109 ENVMLPLELAGRRDAR-----ARARALLErvgLGHRLDHYPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGE 183
|
170 180
....*....|....*....|....*...
gi 1387244451 1517 ----LLWnavTRTRESGKAIIITSHSME 1540
Cdd:COG4181 184 qiidLLF---ELNRERGTTLVLVTHDPA 208
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
1363-1548 |
6.05e-10 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 63.76 E-value: 6.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERlsiTKNILKVRSkigycpqfdALLDYMTAREIM 1442
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG---SAALIAISS---------GLNGQLTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1443 IMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAV 1522
Cdd:PRK13545 107 ELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM 186
|
170 180
....*....|....*....|....*.
gi 1387244451 1523 TRTRESGKAIIITSHSMEECDALCTK 1548
Cdd:PRK13545 187 NEFKEQGKTIFFISHSLSQVKSFCTK 212
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
1378-1566 |
7.08e-10 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 62.82 E-value: 7.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1378 GLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKV-----RSKIGYCPQFDALLDYMTAREIMIMYARLWGIP 1452
Cdd:TIGR02142 27 AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIflppeKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1453 ETKINNyvKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD--------PVARRLlwnavtr 1524
Cdd:TIGR02142 107 ERRISF--ERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDdprkyeilPYLERL------- 177
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1387244451 1525 TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:TIGR02142 178 HAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
511-702 |
7.82e-10 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 60.95 E-value: 7.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMVQVR 586
Cdd:PRK10584 7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQmdeeARAKLR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 -KSLGLCPQDDILFHHLTVSEHLYFYCVIKGvPPEIQSKEINKMLIS-FGLIEKHDALAKSLSGGMKRKLSIIIALIGGS 664
Cdd:PRK10584 87 aKHVGFVFQSFMLIPTLNALENVELPALLRG-ESSRQSRNGAKALLEqLGLGKRLDHLPAQLSGGEQQRVALARAFNGRP 165
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 665 KVVILDEPTSGMDPVSRRFTWDVL--QKHKENRTVLLTTH 702
Cdd:PRK10584 166 DVLFADEPTGNLDRQTGDKIADLLfsLNREHGTTLILVTH 205
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
1365-1566 |
9.71e-10 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 61.16 E-value: 9.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK-VRSKIGYCPQFDALLDYMTAREIMI 1443
Cdd:PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKeVARRIGLLAQNATTPGDITVQELVA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1444 --------MYARlWgipETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVAR 1515
Cdd:PRK10253 104 rgryphqpLFTR-W---RKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQ 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1516 RLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK10253 180 IDLLELLSElNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1364-1556 |
9.73e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 63.10 E-value: 9.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK--VRSKIGYCPQ---FDALLDYMTA 1438
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQdgLANGIVYISEdrkRDGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1439 REIMIMYA-----RLWG-IPETKINNYVKKSMEALNLES-YADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PRK10762 348 KENMSLTAlryfsRAGGsLKHADEQQAVSDFIRLFNIKTpSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1387244451 1512 PVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:PRK10762 428 VGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
540-702 |
1.01e-09 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 63.71 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 540 GQITVLLGHNGAGKTTTLSILTGlyRPT----SGKVYISGYDISKDMVqVRKSlGLCPQDDILFHHLTVSEHLYFYCVIK 615
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLAG--RKTggyiEGDIRISGFPKKQETF-ARIS-GYCEQNDIHSPQVTVRESLIYSAFLR 981
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 616 gVPPEIQSKE----INKMLISFGLIEKHDALA-----KSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDP-----VSR 681
Cdd:PLN03140 982 -LPKEVSKEEkmmfVDEVMELVELDNLKDAIVglpgvTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAraaaiVMR 1060
|
170 180
....*....|....*....|...
gi 1387244451 682 --RFTWDVlqkhkeNRTVLLTTH 702
Cdd:PLN03140 1061 tvRNTVDT------GRTVVCTIH 1077
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
513-705 |
1.05e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 63.78 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 513 IQHLYKEFTLQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRpTSGKVYISGydISKDMV---QVRKSL 589
Cdd:TIGR01271 1220 VQGLTAKYTEAGRAVL--QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDG--VSWNSVtlqTWRKAF 1294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 590 GLCPQDDILFHHL-----------------TVSEHLYFYCVIKGVPpeiqsKEINKMLISFGLIekhdalaksLSGGMKR 652
Cdd:TIGR01271 1295 GVIPQKVFIFSGTfrknldpyeqwsdeeiwKVAEEVGLKSVIEQFP-----DKLDFVLVDGGYV---------LSNGHKQ 1360
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 653 KLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHHMD 705
Cdd:TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
526-728 |
1.27e-09 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 60.96 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 526 TVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKD----------MVQVRKSLGLCPQD 595
Cdd:PRK15112 25 TVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGdysyrsqrirMIFQDPSTSLNPRQ 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 596 DIlfhhltvSEHLYFYCVIK-GVPPEIQSKEINKMLISFGLIEKHDA-LAKSLSGGMKRKLSIIIALIGGSKVVILDEPT 673
Cdd:PRK15112 105 RI-------SQILDFPLRLNtDLEPEQREKQIIETLRQVGLLPDHASyYPHMLAPGQKQRLGLARALILRPKVIIADEAL 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 674 SGMDPVSRRFTWDVLQKHKENRTV--LLTTHHMDEADVLGDRIAIMAKGTLQCCGST 728
Cdd:PRK15112 178 ASLDMSMRSQLINLMLELQEKQGIsyIYVTQHLGMMKHISDQVLVMHQGEVVERGST 234
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
531-721 |
1.36e-09 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 59.97 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 531 QDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLY--RPTSGKVYISGYDISKDmvqvrkslglcpqddilfhhLTVSEHL 608
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQFGRE--------------------ASLIDAI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 609 YfycvIKGVPPeiQSKEInkmLISFGLIEKHDALAK--SLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWD 686
Cdd:COG2401 107 G----RKGDFK--DAVEL---LNAVGLSDAVLWLRRfkELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVAR 177
|
170 180 190
....*....|....*....|....*....|....*...
gi 1387244451 687 VLQK--HKENRTVLLTTHHMDEADVLG-DRIAIMAKGT 721
Cdd:COG2401 178 NLQKlaRRAGITLVVATHHYDVIDDLQpDLLIFVGYGG 215
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1310-1547 |
2.14e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 62.26 E-value: 2.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1310 NKDRVSK--ELSgeSEDEDVQNERNRILDNPQESLNSIVL-IKELIKVYFSKpvvLAVRNISVAIQKQECFGLLGLNGAG 1386
Cdd:TIGR03719 286 SKARLARyeELL--SQEFQKRNETAEIYIPPGPRLGDKVIeAENLTKAFGDK---LLIDDLSFKLPPGGIVGVIGPNGAG 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1387 KTTTFEILTGEEVASSGdvfveRLSITKNIlkvrsKIGYCPQF-DALLDYMTareimimyarLW-----GIPETKINNYV 1460
Cdd:TIGR03719 361 KSTLFRMITGQEQPDSG-----TIEIGETV-----KLAYVDQSrDALDPNKT----------VWeeisgGLDIIKLGKRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1461 KKS---MEALNLESyAD--KYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTreSGKAIIIt 1535
Cdd:TIGR03719 421 IPSrayVGRFNFKG-SDqqKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLNF--AGCAVVI- 496
|
250
....*....|..
gi 1387244451 1536 SHSMEECDALCT 1547
Cdd:TIGR03719 497 SHDRWFLDRIAT 508
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1361-1558 |
2.45e-09 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 61.97 E-value: 2.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSIT-KNILKVR-SKIGYCP---QFDALLDY 1435
Cdd:COG3845 271 VPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITgLSPRERRrLGVAYIPedrLGRGLVPD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1436 MTAREIMIM-------YARLWGIPETKINNYVKKSMEAL-----NLESYADkyiyTYSGGNKRRLSTAIALMGKPSVIFL 1503
Cdd:COG3845 351 MSVAENLILgryrrppFSRGGFLDRKAIRAFAEELIEEFdvrtpGPDTPAR----SLSGGNQQKVILARELSRDPKLLIA 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1504 DEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:COG3845 427 AQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIV 481
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
521-720 |
3.33e-09 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 60.63 E-value: 3.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 521 TLQNMT------VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKdmvqvrkslgLCPQ 594
Cdd:PRK11650 5 KLQAVRksydgkTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE----------LEPA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 595 D-DI--------LFHHLTVSEHLYFYCVIKGVP-PEIQSK--------EINKMLisfgliekhDALAKSLSGG------M 650
Cdd:PRK11650 75 DrDIamvfqnyaLYPHMSVRENMAYGLKIRGMPkAEIEERvaeaarilELEPLL---------DRKPRELSGGqrqrvaM 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 651 KRklsiiiALIGGSKVVILDEPTSGMDP---VSRRFTwdvLQK-HKE-NRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11650 146 GR------AIVREPAVFLFDEPLSNLDAklrVQMRLE---IQRlHRRlKTTSLYVTHDQVEAMTLADRVVVMNGG 211
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
531-704 |
3.41e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 61.97 E-value: 3.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 531 QDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKD--MVQVRKSLGLCPQDDILFHHLTVSEHL 608
Cdd:PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDinLKWWRSKIGVVSQDPLLFSNSIKNNIK 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 609 YFYCVIKGVppEIQSKEIN----------------------------KMLISFGLIE----------------------- 637
Cdd:PTZ00265 482 YSLYSLKDL--EALSNYYNedgndsqenknkrnscrakcagdlndmsNTTDSNELIEmrknyqtikdsevvdvskkvlih 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 638 --------KHDAL----AKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQ--KHKENRTVLLTTHH 703
Cdd:PTZ00265 560 dfvsalpdKYETLvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINnlKGNENRITIIIAHR 639
|
.
gi 1387244451 704 M 704
Cdd:PTZ00265 640 L 640
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
526-680 |
3.45e-09 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 60.49 E-value: 3.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 526 TVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI----SKDMVQVRKSLGLCPQDDI--LF 599
Cdd:PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLlgmkDDEWRAVRSDIQMIFQDPLasLN 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 600 HHLTVSEhlyfycvIKGVP-----PEIQSKEINK----MLISFGLIEK------HDalaksLSGGMKRKLSIIIALIGGS 664
Cdd:PRK15079 113 PRMTIGE-------IIAEPlrtyhPKLSRQEVKDrvkaMMLKVGLLPNlinrypHE-----FSGGQCQRIGIARALILEP 180
|
170
....*....|....*.
gi 1387244451 665 KVVILDEPTSGMDpVS 680
Cdd:PRK15079 181 KLIICDEPVSALD-VS 195
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
533-702 |
4.29e-09 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 60.97 E-value: 4.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 533 LSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKD-MVQVRKslglcpqddiLF------HHLTvs 605
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADnREAYRQ----------LFsavfsdFHLF-- 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 606 EHLYfycvikGVPPEIQSKEINKMLISFGLIEK----HDALAK-SLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVS 680
Cdd:COG4615 419 DRLL------GLDGEADPARARELLERLELDHKvsveDGRFSTtDLSQGQRKRLALLVALLEDRPILVFDEWAADQDPEF 492
|
170 180
....*....|....*....|....
gi 1387244451 681 RR-FTWDVLQKHKE-NRTVLLTTH 702
Cdd:COG4615 493 RRvFYTELLPELKArGKTVIAISH 516
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
531-720 |
4.82e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 60.70 E-value: 4.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 531 QDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISG--YDISKDMVQVRKSLGLCPQD---DILFHHLTVS 605
Cdd:PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGkpIDIRSPRDAIRAGIMLCPEDrkaEGIIPVHSVA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 606 E---------HLYFYCVI-KGVPPEIQSKEINKMLISfglIEKHDALAKSLSGGMKRKlsIIIA--LIGGSKVVILDEPT 673
Cdd:PRK11288 350 DninisarrhHLRAGCLInNRWEAENADRFIRSLNIK---TPSREQLIMNLSGGNQQK--AILGrwLSEDMKVILLDEPT 424
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1387244451 674 SGMDPVSRRFTWDVLQK-HKENRTVLLTTHhmDEADVLG--DRIAIMAKG 720
Cdd:PRK11288 425 RGIDVGAKHEIYNVIYElAAQGVAVLFVSS--DLPEVLGvaDRIVVMREG 472
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1350-1564 |
5.05e-09 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 58.97 E-value: 5.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFSKPVVLAvrNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVfvERlsitknilKVRSKIGYCPQ- 1428
Cdd:PRK09544 8 ENVSVSFGQRRVLS--DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--KR--------NGKLRIGYVPQk 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 --FDALLDYMTAREIMIMyarlwgiPETKINNyVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:PRK09544 76 lyLDTTLPLTVNRFLRLR-------PGTKKED-ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1507 STGMDPVARRLLWNAVTRTR-ESGKAIIITSHS----MEECD-ALCTKLAImvkgkfVCLGSPQ 1564
Cdd:PRK09544 148 TQGVDVNGQVALYDLIDQLRrELDCAVLMVSHDlhlvMAKTDeVLCLNHHI------CCSGTPE 205
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1359-1558 |
5.37e-09 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 60.71 E-value: 5.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1359 PVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTG--------EEVASSGDV----------------------FVE 1408
Cdd:PRK13549 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGvyphgtyeGEIIFEGEElqasnirdteragiaiihqelaLVK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1409 RLSITKNILkvrskIGYCPQFDALLDYMTareimiMYARlwgipetkinnyVKKSMEALNLESYADKYIYTYSGGNKRRL 1488
Cdd:PRK13549 96 ELSVLENIF-----LGNEITPGGIMDYDA------MYLR------------AQKLLAQLKLDINPATPVGNLGLGQQQLV 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1489 STAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
1355-1571 |
5.38e-09 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 58.71 E-value: 5.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1355 YFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIGYCPQFDALL 1433
Cdd:cd03249 10 YPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlNLRWLRSQIGLVSQEPVLF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1434 DyMTAREiMIMYARLWGIPETKINnyVKKSMEALN-LESYADKYiYT--------YSGGNKRRLSTAIALMGKPSVIFLD 1504
Cdd:cd03249 90 D-GTIAE-NIRYGKPDATDEEVEE--AAKKANIHDfIMSLPDGY-DTlvgergsqLSGGQKQRIAIARALLRNPKILLLD 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1505 EPSTGMDPVARRLLWNAVTRTREsGKAIIITSHSmeecdaLCT-----KLAIMVKGKFVCLGSPQHLKNKFG 1571
Cdd:cd03249 165 EATSALDAESEKLVQEALDRAMK-GRTTIVIAHR------LSTirnadLIAVLQNGQVVEQGTHDELMAQKG 229
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
542-720 |
5.38e-09 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 59.89 E-value: 5.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 542 ITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISG---YDISKDM---VQVRKsLGLCPQDDILFHHLTVSEHLYFycvik 615
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGrvlFDAEKGIclpPEKRR-IGYVFQDARLFPHYKVRGNLRY----- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 616 GVPPEIQSK--EINKMLisfGlIEKH-DALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK-- 690
Cdd:PRK11144 100 GMAKSMVAQfdKIVALL---G-IEPLlDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERla 175
|
170 180 190
....*....|....*....|....*....|
gi 1387244451 691 HKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11144 176 REINIPILYVSHSLDEILRLADRVVVLEQG 205
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1339-1556 |
5.39e-09 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 59.74 E-value: 5.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1339 QESLNSIVLIKELiKVYFSKP--VVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEeVASSGDVFVERLSITKNI 1416
Cdd:PRK09473 6 QQQADALLDVKDL-RVTFSTPdgDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL-LAANGRIGGSATFNGREI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1417 LKVRSKigycpqfdaLLDYMTAREI-MIMYArlwgiPETKINNYVKKS---MEALNLESYADK----------------- 1475
Cdd:PRK09473 84 LNLPEK---------ELNKLRAEQIsMIFQD-----PMTSLNPYMRVGeqlMEVLMLHKGMSKaeafeesvrmldavkmp 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1476 --------YIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD-PVARRL--LWNAVtrTRESGKAIIITSHSMEECDA 1544
Cdd:PRK09473 150 earkrmkmYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDvTVQAQImtLLNEL--KREFNTAIIMITHDLGVVAG 227
|
250
....*....|..
gi 1387244451 1545 LCTKLAIMVKGK 1556
Cdd:PRK09473 228 ICDKVLVMYAGR 239
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1363-1568 |
6.39e-09 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 58.59 E-value: 6.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK----NIlkVRSKIGYCPQ----FDALld 1434
Cdd:COG4674 25 ALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGldehEI--ARLGIGRKFQkptvFEEL-- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1435 ymTARE-IMIMYAR---LWGIPETKINNYVKKSMEAL----NLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:COG4674 101 --TVFEnLELALKGdrgVFASLFARLTAEERDRIEEVletiGLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKLLLLDEP 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1507 STGMDPVARRL---LWNAVTRTResgkAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHLKN 1568
Cdd:COG4674 179 VAGMTDAETERtaeLLKSLAGKH----SVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQA 239
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1367-1556 |
6.51e-09 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 58.25 E-value: 6.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1367 ISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSK-----IGYCPQFDALLDYMTAREI 1441
Cdd:PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKlrakhVGFVFQSFMLIPTLNALEN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD-PVARRLLWN 1520
Cdd:PRK10584 109 VELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDrQTGDKIADL 188
|
170 180 190
....*....|....*....|....*....|....*.
gi 1387244451 1521 AVTRTRESGKAIIITSHSmEECDALCTKLAIMVKGK 1556
Cdd:PRK10584 189 LFSLNREHGTTLILVTHD-LQLAARCDRRLRLVNGQ 223
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
1354-1574 |
6.63e-09 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 58.40 E-value: 6.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1354 VYFS-KPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK-VRSKIGYCPQ--- 1428
Cdd:cd03253 6 VTFAyDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDsLRRAIGVVPQdtv 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 -FDALLDYMtareimIMYARlWGIPETKINNYVKKSMEALNLESYADKY--------IYTySGGNKRRLSTAIALMGKPS 1499
Cdd:cd03253 86 lFNDTIGYN------IRYGR-PDATDEEVIEAAKAAQIHDKIMRFPDGYdtivgergLKL-SGGEKQRVAIARAILKNPP 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 1500 VIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITS--HSMEECDalctKLAIMVKGKFVCLGSPQHLKNKfGNVY 1574
Cdd:cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHrlSTIVNAD----KIIVLKDGRIVERGTHEELLAK-GGLY 229
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
520-722 |
8.37e-09 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 60.18 E-value: 8.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 520 FTLQNMT---VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDIS--KDMVQVRKSLGLCPQ 594
Cdd:PRK09700 266 FEVRNVTsrdRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprSPLDAVKKGMAYITE 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 595 ---DDILFHHLTVSEHLYFYCVIK--------GVPPEIQSKEI-----NKMLISFGLIEKHdalAKSLSGGMKRKLSIII 658
Cdd:PRK09700 346 srrDNGFFPNFSIAQNMAISRSLKdggykgamGLFHEVDEQRTaenqrELLALKCHSVNQN---ITELSGGNQQKVLISK 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 659 ALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK-HKENRTVLLTTHHMDEADVLGDRIAIMAKGTL 722
Cdd:PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQlADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1338-1556 |
8.78e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 59.84 E-value: 8.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1338 PQESLNSIVLIKELIKVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGE-EVASSGDVFVERLSI-TKN 1415
Cdd:TIGR02633 250 PHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAyPGKFEGNVFINGKPVdIRN 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1416 ILK-VRSKIGYCPQ---FDALLDYM-TAREIMIM----YARLWGIPETKINNYVKKSMEALNLESYA-DKYIYTYSGGNK 1485
Cdd:TIGR02633 330 PAQaIRAGIAMVPEdrkRHGIVPILgVGKNITLSvlksFCFKMRIDAAAELQIIGSAIQRLKVKTASpFLPIGRLSGGNQ 409
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1486 RRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
522-722 |
9.64e-09 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 60.02 E-value: 9.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 522 LQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDmvqvrkslglCPQD------ 595
Cdd:PRK10762 260 VDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTR----------SPQDglangi 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 596 ---------DILFHHLTVSEHL------YFycviKGVPPEIQSKEINKMLISFglIE-------KHDALAKSLSGGMKRK 653
Cdd:PRK10762 330 vyisedrkrDGLVLGMSVKENMsltalrYF----SRAGGSLKHADEQQAVSDF--IRlfniktpSMEQAIGLLSGGNQQK 403
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 654 LSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHK-ENRTVLLTTHHMDEadVLG--DRIAIMAKGTL 722
Cdd:PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKaEGLSIILVSSEMPE--VLGmsDRILVMHEGRI 473
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1378-1545 |
1.14e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 57.76 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1378 GLLGLNGAGKTTTFEILTGEEVASSGdvfverlsitknilkvrsKIGYCPQFDALLDYMTAREIMIMYARLWG------- 1450
Cdd:cd03236 30 GLVGPNGIGKSTALKILAGKLKPNLG------------------KFDDPPDWDEILDEFRGSELQNYFTKLLEgdvkviv 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1451 -------IPET---KINNYVKKS---------MEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:cd03236 92 kpqyvdlIPKAvkgKVGELLKKKdergkldelVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
170 180 190
....*....|....*....|....*....|....*
gi 1387244451 1512 pVARRLLWNAVTRTR-ESGKAIIITSHSMEECDAL 1545
Cdd:cd03236 172 -IKQRLNAARLIRELaEDDNYVLVVEHDLAVLDYL 205
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
1378-1566 |
1.51e-08 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 57.88 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1378 GLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERLSITKNILKVRsKIGYCPQFDALLDYMTAREIMIMYARLW----GI 1451
Cdd:PRK10575 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEILLdaQPLESWSSKAFAR-KVAYLPQQLPAAEGMTVRELVAIGRYPWhgalGR 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1452 PETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTR-TRESGK 1530
Cdd:PRK10575 120 FGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRlSQERGL 199
|
170 180 190
....*....|....*....|....*....|....*.
gi 1387244451 1531 AIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK10575 200 TVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1367-1556 |
1.57e-08 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 59.15 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1367 ISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERLSITKNILKVRSKIGYCPQ---FDALLDYMTAREI 1441
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLdgKPIDIRSPRDAIRAGIMLCPEdrkAEGIIPVHSVADN 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYARLWGIPetkINNYVKKSMEALNLESY----------ADKYIYTYSGGNK------RRLSTAIalmgkpSVIFLDE 1505
Cdd:PRK11288 352 INISARRHHLR---AGCLINNRWEAENADRFirslniktpsREQLIMNLSGGNQqkailgRWLSEDM------KVILLDE 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1506 PSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:PRK11288 423 PTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
530-723 |
1.61e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 59.07 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPT-SGKVYISGY--DISKDMVQVRKSLGLCPQDDI--------- 597
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKpvDIRNPAQAIRAGIAMVPEDRKrhgivpilg 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 598 LFHHLTVSEhLYFYCVIKGVPPEIQSKEINKMLISFGLIEKHDALA-KSLSGGMKRKLSIIIALIGGSKVVILDEPTSGM 676
Cdd:TIGR02633 356 VGKNITLSV-LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGV 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1387244451 677 DPVSRRFTWDVL-QKHKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQ 723
Cdd:TIGR02633 435 DVGAKYEIYKLInQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1358-1506 |
1.81e-08 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 58.20 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1358 KPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK----NILKVRSKIGYCPQ--FDA 1431
Cdd:COG4608 28 VGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGlsgrELRPLRRRMQMVFQdpYAS 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 1432 LLDYMTAREIM---IMYARLWgiPETKINNYVKKSMEALNL-ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:COG4608 108 LNPRMTVGDIIaepLRIHGLA--SKAERRERVAELLELVGLrPEHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEP 184
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
1364-1511 |
1.93e-08 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 56.12 E-value: 1.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTG---EEVASSGDVFVERLSITKNILKVRSKIGYCPQFDALLDYMTARE 1440
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANrteGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRE 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1441 IMIMYARLWGipetkiNNYVKKsmealnlesyadkyiytYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:cd03233 103 TLDFALRCKG------NEFVRG-----------------ISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
1365-1511 |
2.85e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 58.72 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERlsitknilKVRSKIGYCPQFDALldYMTAREIMIM 1444
Cdd:PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA--------KVRMAVFSQHHVDGL--DLSSNPLLYM 595
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 1445 YARLWGIPETKINNYVKKSMEALNLesyADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PLN03073 596 MRCFPGVPEQKLRAHLGSFGVTGNL---ALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1361-1558 |
2.96e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 58.30 E-value: 2.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTG---------------EEVASSGDVFVERlsitKNILKVRSKIGY 1425
Cdd:TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGvyphgtwdgeiywsgSPLKASNIRDTER----AGIVIIHQELTL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQFDALLDYMTAREIMI---------MYARlwgipetkinnyVKKSMEALNLESYAD-KYIYTYSGGNKRRLSTAIALM 1495
Cdd:TIGR02633 90 VPELSVAENIFLGNEITLpggrmaynaMYLR------------AKNLLRELQLDADNVtRPVGDYGGGQQQLVEIAKALN 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 1496 GKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
1363-1563 |
3.71e-08 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 55.50 E-value: 3.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNIL-KVRSKIGYCPQfDALLDYMTAREI 1441
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLeDLRSSLTIIPQ-DPTLFSGTIRSN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYARLwgiPETKINNYVKKSMEALNLesyadkyiytySGGNKRRLSTAIALMGKPSVIFLDEPSTGMDpVARRLLWNA 1521
Cdd:cd03369 102 LDPFDEY---SDEEIYGALRVSEGGLNL-----------SQGQRQLLCLARALLKRPRVLVLDEATASID-YATDALIQK 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1387244451 1522 VTRTRESGKAIIITSHSMEECdALCTKLAIMVKGKFVCLGSP 1563
Cdd:cd03369 167 TIREEFTNSTILTIAHRLRTI-IDYDKILVMDAGEVKEYDHP 207
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1364-1556 |
3.86e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 58.02 E-value: 3.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGE-EVASSGDVFVE---------RLSITKNILKV---RSKIGYCPQFD 1430
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAyPGRWEGEIFIDgkpvkirnpQQAIAQGIAMVpedRKRDGIVPVMG 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1431 -------ALLDYMTAREImimyarlwgIPETKINNYVKKSMEALNLE-SYADKYIYTYSGGNKRRLSTAIALMGKPSVIF 1502
Cdd:PRK13549 358 vgknitlAALDRFTGGSR---------IDDAAELKTILESIQRLKVKtASPELAIARLSGGNQQKAVLAKCLLLNPKILI 428
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1503 LDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:PRK13549 429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGK 482
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
520-704 |
3.88e-08 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 54.47 E-value: 3.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 520 FTLQNMTVLA------VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYIsgydiskdmvqvrkslglCP 593
Cdd:cd03223 1 IELENLSLATpdgrvlLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM------------------PE 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 594 QDDILFhhltVSEHLYFycvikgvPPeiqskeinkmlisfGLIEkhDALA----KSLSGGMKRKLSIIIALIGGSKVVIL 669
Cdd:cd03223 63 GEDLLF----LPQRPYL-------PL--------------GTLR--EQLIypwdDVLSGGEQQRLAFARLLLHKPKFVFL 115
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1387244451 670 DEPTSGMDPVSRRFTWDVLQKHK------ENRTVLLTTHHM 704
Cdd:cd03223 116 DEATSALDEESEDRLYQLLKELGitvisvGHRPSLWKFHDR 156
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1353-1511 |
4.16e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 58.02 E-value: 4.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1353 KVYFSKPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVErlsitKNIlkvrsKIGYCPQ---- 1428
Cdd:TIGR03719 12 KVVPPKKEIL--KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQ-----PGI-----KVGYLPQepql 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 -------------------------------------FDALLDYMTAREIMIMYARLWgipetKINNYVKKSMEALNLES 1471
Cdd:TIGR03719 80 dptktvrenveegvaeikdaldrfneisakyaepdadFDKLAAEQAELQEIIDAADAW-----DLDSQLEIAMDALRCPP 154
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 1472 YaDKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:TIGR03719 155 W-DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1351-1581 |
4.51e-08 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 57.35 E-value: 4.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1351 LIKVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERLSitkNILKVRSKIGYCPQ 1428
Cdd:PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIgeKRMN---DVPPAERGVGMVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 FDALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPST 1508
Cdd:PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1509 GMDPVARRLLWNAVTRT-RESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL----KNKFGNVYILKVKIN 1581
Cdd:PRK11000 163 NLDAALRVQMRIEISRLhKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELyhypANRFVAGFIGSPKMN 240
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1345-1571 |
5.33e-08 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 55.94 E-value: 5.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1345 IVLIKELiKVYFSKPVvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILT-----GEEVASSGDVFVERLSI---TKNI 1416
Cdd:PRK14239 5 ILQVSDL-SVYYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmndlNPEVTITGSIVYNGHNIyspRTDT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1417 LKVRSKIGYCPQ----FDalldyMTAREIMIMYARLWGIPETKI-NNYVKKSMEALNLESYADKYIYT----YSGGNKRR 1487
Cdd:PRK14239 82 VDLRKEIGMVFQqpnpFP-----MSIYENVVYGLRLKGIKDKQVlDEAVEKSLKGASIWDEVKDRLHDsalgLSGGQQQR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1488 LSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITsHSMEECDALCTKLAIMVKGKFVCLGS----- 1562
Cdd:PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT-RSMQQASRISDRTGFFLDGDLIEYNDtkqmf 235
|
250
....*....|....*..
gi 1387244451 1563 --PQH------LKNKFG 1571
Cdd:PRK14239 236 mnPKHketedyISGKFG 252
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
528-723 |
6.02e-08 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 57.42 E-value: 6.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 528 LAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQV-RKSLGLCPQD-----DILFHH 601
Cdd:PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVlRQGVAMVQQDpvvlaDTFLAN 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 602 LT----VSEHlyfycVIKGVPPEIQSKEINKMLiSFGLiekHDALAK---SLSGGMKRKLSIIIALIGGSKVVILDEPTS 674
Cdd:PRK10790 435 VTlgrdISEE-----QVWQALETVQLAELARSL-PDGL---YTPLGEqgnNLSVGQKQLLALARVLVQTPQILILDEATA 505
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 675 GMDPVSRRFTWDVLQKHKENRTVLLTTHHMD---EAD---VLgDRIAIMAKGTLQ 723
Cdd:PRK10790 506 NIDSGTEQAIQQALAAVREHTTLVVIAHRLStivEADtilVL-HRGQAVEQGTHQ 559
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1364-1515 |
6.61e-08 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 54.80 E-value: 6.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTG---EEVASSGDVFVERLSITKniLKV-RSKIGYCPQfDALL-DYMTA 1438
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGtlsPAFSASGEVLLNGRRLTA--LPAeQRRIGILFQ-DDLLfPHLSV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1439 REIMimyarLWGIPETkinnyVKKS------MEAL---NLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTG 1509
Cdd:COG4136 94 GENL-----AFALPPT-----IGRAqrrarvEQALeeaGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSK 163
|
....*.
gi 1387244451 1510 MDPVAR 1515
Cdd:COG4136 164 LDAALR 169
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
1368-1561 |
6.78e-08 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 54.81 E-value: 6.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1368 SVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSkIGYCPQFDALLDYMTArEIMIMYAR 1447
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP-VSMLFQENNLFAHLTV-EQNVGLGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1448 lwgIPETKINNYVKKSMEA----LNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVT 1523
Cdd:cd03298 96 ---SPGLKLTAEDRQAIEValarVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL 172
|
170 180 190
....*....|....*....|....*....|....*....
gi 1387244451 1524 RT-RESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLG 1561
Cdd:cd03298 173 DLhAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
529-720 |
6.82e-08 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 55.70 E-value: 6.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 529 AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKV-YISGYDISKDMVQ---------VRKSLGLCPQD--D 596
Cdd:PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVhYRMRDGQLRDLYAlseaerrrlLRTEWGFVHQHprD 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 597 ILfhHLTVS------EHLY-----FYCVIKGVPPE-IQSKEINKMLIsfgliekhDALAKSLSGGMKRKLSIIIALIGGS 664
Cdd:PRK11701 101 GL--RMQVSaggnigERLMavgarHYGDIRATAGDwLERVEIDAARI--------DDLPTTFSGGMQQRLQIARNLVTHP 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 665 KVVILDEPTSGMDpVS---------RRFTWDVlqkhkeNRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11701 171 RLVFMDEPTGGLD-VSvqarlldllRGLVREL------GLAVVIVTHDLAVARLLAHRLLVMKQG 228
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1363-1511 |
7.18e-08 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 54.88 E-value: 7.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVF-----VERLSiTKNILKVRSKIGYCPQFDALLDYMT 1437
Cdd:PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWfsghdITRLK-NREVPFLRRQIGMIFQDHHLLMDRT 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1438 AREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
533-720 |
7.26e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 57.68 E-value: 7.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 533 LSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTV------- 604
Cdd:PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfGLTDLRRVLSIIPQSPVLFSG-TVrfnidpf 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHlyfycVIKGVPPEIQSKEINKMLI--SFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRR 682
Cdd:PLN03232 1334 SEH-----NDADLWEALERAHIKDVIDrnPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408
|
170 180 190
....*....|....*....|....*....|....*...
gi 1387244451 683 FTWDVLQKHKENRTVLLTTHHMDEAdVLGDRIAIMAKG 720
Cdd:PLN03232 1409 LIQRTIREEFKSCTMLVIAHRLNTI-IDCDKILVLSSG 1445
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
1350-1566 |
9.27e-08 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 56.71 E-value: 9.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1350 ELIKVYFS----KPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIG 1424
Cdd:COG1132 341 EFENVSFSypgdRPVL---KDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDlTLESLRRQIG 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1425 YCPQfDALLDYMTAREiMIMYARLwGIPETKInnyvkksMEALNLeSYADKYI---------------YTYSGGNKRRLS 1489
Cdd:COG1132 418 VVPQ-DTFLFSGTIRE-NIRYGRP-DATDEEV-------EEAAKA-AQAHEFIealpdgydtvvgergVNLSGGQRQRIA 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1490 TAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTREsGKAIIITSH---SMEECDalctKLAIMVKGKFVCLGSPQHL 1566
Cdd:COG1132 487 IARALLKDPPILILDEATSALDTETEALIQEALERLMK-GRTTIVIAHrlsTIRNAD----RILVLDDGRIVEQGTHEEL 561
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1363-1566 |
9.29e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 56.64 E-value: 9.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTgEEVASSGDVF-----VERLSiTKNILKVRSKIGYCPQ--FDALLDY 1435
Cdd:PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALL-RLINSQGEIWfdgqpLHNLN-RRQLLPVRHRIQVVFQdpNSSLNPR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1436 MTAREIM-----IMYARLWGipeTKINNYVKKSMEALNLESYA-DKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTG 1509
Cdd:PRK15134 379 LNVLQIIeeglrVHQPTLSA---AQREQQVIAVMEEVGLDPETrHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1510 MD-PVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK15134 456 LDkTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
542-703 |
1.01e-07 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 54.15 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 542 ITVLLGHNGAGKTTTLS----ILTGLYRPTSgkvyiSGYDISKDMVQVRKSLGlcpQDDILF-------HHLTVSEHLYF 610
Cdd:cd03240 24 LTLIVGQNGAGKTTIIEalkyALTGELPPNS-----KGGAHDPKLIREGEVRA---QVKLAFenangkkYTITRSLAILE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 611 YCVIkgvppeIQSKEINKmlisfgLIEKHdalAKSLSGGMKRKLSIIIAL------IGGSKVVILDEPTSGMDPVSRRFT 684
Cdd:cd03240 96 NVIF------CHQGESNW------PLLDM---RGRCSGGEKVLASLIIRLalaetfGSNCGILALDEPTTNLDEENIEES 160
|
170 180
....*....|....*....|..
gi 1387244451 685 W-DVL--QKHKENRTVLLTTHH 703
Cdd:cd03240 161 LaEIIeeRKSQKNFQLIVITHD 182
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
511-720 |
1.18e-07 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 56.35 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGL--YRPTSGKV-YISGYDISKDMVQVRK 587
Cdd:TIGR03269 1 IEVKNLTKKFD----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIiYHVALCEKCGYVERPS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 588 SLGL-CPQ---------------DDILFHHLTVSEHLYFY---------CVIKGVP---PEIQSKEINKMLISFGLIEK- 638
Cdd:TIGR03269 77 KVGEpCPVcggtlepeevdfwnlSDKLRRRIRKRIAIMLQrtfalygddTVLDNVLealEEIGYEGKEAVGRAVDLIEMv 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 639 -------HdaLAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADV 709
Cdd:TIGR03269 157 qlshritH--IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEavKASGISMVLTSHWPEVIED 234
|
250
....*....|.
gi 1387244451 710 LGDRIAIMAKG 720
Cdd:TIGR03269 235 LSDKAIWLENG 245
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
520-737 |
1.39e-07 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 54.79 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 520 FTLQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDIL 598
Cdd:PRK10575 19 FRVPGRTLL--HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESwSSKAFARKVAYLPQQLPA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 599 FHHLTVSEhlyfyCVIKGVPP---------EIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVIL 669
Cdd:PRK10575 97 AEGMTVRE-----LVAIGRYPwhgalgrfgAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 670 DEPTSGMDPVSRRFTWDVLQKHKENR--TVLLTTHHMDEADVLGDRIAIMAKGTLQCCGSTI------FLKKVYGV 737
Cdd:PRK10575 172 DEPTSALDIAHQVDVLALVHRLSQERglTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAelmrgeTLEQIYGI 247
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1364-1541 |
1.41e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 54.66 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILT-----GEEVASSGDVFVERLSITK---NILKVRSKIGYC-PQFDalLD 1434
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNrmnelESEVRVEGRVEFFNQNIYErrvNLNRLRRQVSMVhPKPN--LF 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1435 YMTAREIMIMYARLWGI-PETKINNYVKKSMEALNL----ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTG 1509
Cdd:PRK14258 101 PMSVYDNVAYGVKIVGWrPKLEIDDIVESALKDADLwdeiKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180
|
170 180 190
....*....|....*....|....*....|...
gi 1387244451 1510 MDPVARRLLWNAVTRTR-ESGKAIIITSHSMEE 1541
Cdd:PRK14258 181 LDPIASMKVESLIQSLRlRSELTMVIVSHNLHQ 213
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
1363-1538 |
1.82e-07 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 55.83 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIGYCPQfDALLDYMTAREi 1441
Cdd:TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSlDQDEVRRRVSVCAQ-DAHLFDTTVRE- 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYARLWGIPETkinnyVKKSMEALNLESYADKYIYTY-----------SGGNKRRLSTAIALMGKPSVIFLDEPSTGM 1510
Cdd:TIGR02868 428 NLRLARPDATDEE-----LWAALERVGLADWLRALPDGLdtvlgeggarlSGGERQRLALARALLADAPILLLDEPTEHL 502
|
170 180 190
....*....|....*....|....*....|..
gi 1387244451 1511 DPVAR----RLLWNAvtrtrESGKAIIITSHS 1538
Cdd:TIGR02868 503 DAETAdellEDLLAA-----LSGRTVVLITHH 529
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
1363-1534 |
1.90e-07 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 53.77 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK-VRSKIGYCPQfDALLDYMTAREi 1441
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLAsLRRQIGLVSQ-DVFLFNDTVAE- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MIMYARLwGIPETKInnyvkksMEALNLeSYADKYI------Y---------TYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:cd03251 95 NIAYGRP-GATREEV-------EEAARA-ANAHEFImelpegYdtvigergvKLSGGQRQRIAIARALLKDPPILILDEA 165
|
170 180
....*....|....*....|....*...
gi 1387244451 1507 STGMDPVARRLLWNAVTRTRESGKAIII 1534
Cdd:cd03251 166 TSALDTESERLVQAALERLMKNRTTFVI 193
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
533-747 |
2.14e-07 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 53.78 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 533 LSLNLYEGQITVLLGHNGAGKTTTLSILTGLYrPTSGKVYISGYDISK----DMVQVRKSlgLCPQDDILF-----HHLT 603
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAwsaaELARHRAY--LSQQQTPPFampvfQYLT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 604 VSEHlyfycviKGVPPEIQSKEINKMLISFGLIEKHDALAKSLSGGMKRK-------LSIIIALIGGSKVVILDEPTSGM 676
Cdd:PRK03695 92 LHQP-------DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRvrlaavvLQVWPDINPAGQLLLLDEPMNSL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 677 DpVSRRFTWDVLQKH--KENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGST------IFLKKVYGVGYHLIIVKDH 747
Cdd:PRK03695 165 D-VAQQAALDRLLSElcQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRdevltpENLAQVFGVNFRRLDVEGH 242
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
513-720 |
2.37e-07 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 55.48 E-value: 2.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 513 IQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKT-TTLSILTGLyrPTSGKVYisgydiskdmvqvrkslgl 591
Cdd:PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLL--PSPPVVY------------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 592 cPQDDILFH----------------------------------HlTVSEHLYFYCVI-KGVPPEIQSKEINKMLISFGLI 636
Cdd:PRK15134 67 -PSGDIRFHgesllhaseqtlrgvrgnkiamifqepmvslnplH-TLEKQLYEVLSLhRGMRREAARGEILNCLDRVGIR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 637 EKHDALAK---SLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKE--NRTVLLTTHHMDEADVLG 711
Cdd:PRK15134 145 QAAKRLTDyphQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQelNMGLLFITHNLSIVRKLA 224
|
....*....
gi 1387244451 712 DRIAIMAKG 720
Cdd:PRK15134 225 DRVAVMQNG 233
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
511-720 |
2.54e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 55.22 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYrPT---SGKVYISGYDISKDMVQ--V 585
Cdd:TIGR02633 2 LEMKGIVKTFG----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHgtwDGEIYWSGSPLKASNIRdtE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 586 RKSLGLCPQDDILFHHLTVSEHLYFYCVIKGVPPEIQSKEI----NKMLISFGLIEKHDALAKS-LSGGMKRKLSIIIAL 660
Cdd:TIGR02633 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMylraKNLLRELQLDADNVTRPVGdYGGGQQQLVEIAKAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 661 IGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKE-NRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAhGVACVYISHKLNEVKAVCDTICVIRDG 217
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1378-1566 |
2.65e-07 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 54.72 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1378 GLLGLNGAGKTTTFEILTGEEVASSGDVFV--ERL-SITKNI-LKV-RSKIGYCPQFDALLDYMTAREiMIMYARlWGIP 1452
Cdd:COG4148 29 ALFGPSGSGKTTLLRAIAGLERPDSGRIRLggEVLqDSARGIfLPPhRRRIGYVFQEARLFPHLSVRG-NLLYGR-KRAP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1453 ETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTR-TRESGKA 1531
Cdd:COG4148 107 RAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPYLERlRDELDIP 186
|
170 180 190
....*....|....*....|....*....|....*
gi 1387244451 1532 IIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:COG4148 187 ILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEV 221
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
1378-1537 |
2.95e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 55.18 E-value: 2.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1378 GLLGLNGAGKTTTFEILTGEEVASSGDV--------FVERLSIT------KNILKVRSKIGYCPQF-DALLDYM--TARE 1440
Cdd:COG1245 103 GILGPNGIGKSTALKILSGELKPNLGDYdeepswdeVLKRFRGTelqdyfKKLANGEIKVAHKPQYvDLIPKVFkgTVRE 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1441 ImimyarLWGIPETKINNYVkksMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWN 1520
Cdd:COG1245 183 L------LEKVDERGKLDEL---AEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVAR 253
|
170
....*....|....*..
gi 1387244451 1521 AVTRTRESGKAIIITSH 1537
Cdd:COG1245 254 LIRELAEEGKYVLVVEH 270
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
1365-1540 |
3.37e-07 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 52.47 E-value: 3.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVErlsitknilkvrSKIGYCPQFdALLDYMTARE-Imi 1443
Cdd:cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP------------GSIAYVSQE-PWIQNGTIREnI-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1444 myarLWGIP--ETKINNYVK--------KSMEALNLESYADKYIyTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDP- 1512
Cdd:cd03250 87 ----LFGKPfdEERYEKVIKacalepdlEILPDGDLTEIGEKGI-NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAh 161
|
170 180
....*....|....*....|....*...
gi 1387244451 1513 VARRLLWNAVTRTRESGKAIIITSHSME 1540
Cdd:cd03250 162 VGRHIFENCILGLLLNNKTRILVTHQLQ 189
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1348-1545 |
4.79e-07 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 53.17 E-value: 4.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELIKVYFSKPV--VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKniLKV--RSK- 1422
Cdd:COG1101 4 LKNLSKTFNPGTVneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTK--LPEykRAKy 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1423 ---------IGYCPQfdalldyMTAREIMIM-YAR------LWGIPETKINNYvKKSMEALN--LESYADKYIYTYSGGN 1484
Cdd:COG1101 82 igrvfqdpmMGTAPS-------MTIEENLALaYRRgkrrglRRGLTKKRRELF-RELLATLGlgLENRLDTKVGLLSGGQ 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1485 KRRLSTAIALMGKPSVIFLDEPSTGMDP-VARRLLwnAVTRTRESGK---AIIITsHSMEecDAL 1545
Cdd:COG1101 154 RQALSLLMATLTKPKLLLLDEHTAALDPkTAALVL--ELTEKIVEENnltTLMVT-HNME--QAL 213
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1361-1537 |
5.66e-07 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 54.34 E-value: 5.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK------NILKvRSKIGYCPQFDALLD 1434
Cdd:PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATldadalAQLR-REHFGFIFQRYHLLS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1435 YMTAR---EIMIMYArlwGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PRK10535 100 HLTAAqnvEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
|
170 180
....*....|....*....|....*.
gi 1387244451 1512 PVARRLLWNAVTRTRESGKAIIITSH 1537
Cdd:PRK10535 177 SHSGEEVMAILHQLRDRGHTVIIVTH 202
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1353-1506 |
6.07e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 54.35 E-value: 6.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1353 KVYFSKPVVLavRNISVAiqkqecF------GLLGLNGAGKTTTFEILTGEEVASSGDVFVerlsiTKNIlkvrsKIGYC 1426
Cdd:PRK11819 14 KVVPPKKQIL--KDISLS------FfpgakiGVLGLNGAGKSTLLRIMAGVDKEFEGEARP-----APGI-----KVGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1427 PQ-----------------------------------------FDALLDYMTAREIMIMYARLWgipetKINNYVKKSME 1465
Cdd:PRK11819 76 PQepqldpektvrenveegvaevkaaldrfneiyaayaepdadFDALAAEQGELQEIIDAADAW-----DLDSQLEIAMD 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1387244451 1466 ALNLESyADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:PRK11819 151 ALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
532-705 |
7.20e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 51.41 E-value: 7.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 532 DLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK----DMVQVRKSLGLCPQddilfhhLTVSEH 607
Cdd:PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNiakpYCTYIGHNLGLKLE-------MTVFEN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 608 LYFYCVIKGvppeiQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDV 687
Cdd:PRK13541 91 LKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNL 165
|
170
....*....|....*...
gi 1387244451 688 LQKHKENRTVLLTTHHMD 705
Cdd:PRK13541 166 IVMKANSGGIVLLSSHLE 183
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
537-714 |
7.59e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 54.04 E-value: 7.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 537 LYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISgYDIS-KdmvqvrkslglcPQ---DDilfHHLTVSEHLyfyc 612
Cdd:PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISyK------------PQyikPD---YDGTVEDLL---- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 613 viKGVPPEIQSK----EINKMLisfGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDpVSRRFT-WDV 687
Cdd:PRK13409 422 --RSITDDLGSSyyksEIIKPL---QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD-VEQRLAvAKA 495
|
170 180
....*....|....*....|....*....
gi 1387244451 688 LQKHKENR--TVLLTTHHMDEADVLGDRI 714
Cdd:PRK13409 496 IRRIAEEReaTALVVDHDIYMIDYISDRL 524
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1361-1571 |
8.24e-07 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 53.98 E-value: 8.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFV---------ERLSitknilkVRSKIGYCPQfdA 1431
Cdd:NF033858 14 TVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVlggdmadarHRRA-------VCPRIAYMPQ--G 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1432 L---LdYMT--AREIMIMYARLWGIP----ETKINNYvkksMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIF 1502
Cdd:NF033858 85 LgknL-YPTlsVFENLDFFGRLFGQDaaerRRRIDEL----LRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1503 LDEPSTGMDPVARRLLWNAVTRTRES--GKAIIITSHSMEE---CDalctKLAIMVKGKFVCLGSPQHLKNKFG 1571
Cdd:NF033858 160 LDEPTTGVDPLSRRQFWELIDRIRAErpGMSVLVATAYMEEaerFD----WLVAMDAGRVLATGTPAELLARTG 229
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
1344-1541 |
9.69e-07 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 52.09 E-value: 9.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1344 SIVLIKELIKVYFSKpvVLAVRNISVAIQKQECFGLLGLNGAGKTTTF-------EILTGEEVasSGDVFVErlsiTKNI 1416
Cdd:PRK14243 8 ETVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILrcfnrlnDLIPGFRV--EGKVTFH----GKNL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1417 lkvrskigYCPQFDALldyMTAREIMIMYARLWGIPET---------KINNY-------VKKSM-EALNLESYADKYI-- 1477
Cdd:PRK14243 80 --------YAPDVDPV---EVRRRIGMVFQKPNPFPKSiydniaygaRINGYkgdmdelVERSLrQAALWDEVKDKLKqs 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1478 -YTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESgKAIIITSHSMEE 1541
Cdd:PRK14243 149 gLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQ 212
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
1363-1543 |
1.12e-06 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 53.44 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKV-RSKIGYCPQFDALLDYMTAREI 1441
Cdd:TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSwRDQIAWVPQHPFLFAGTIAENI 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MImyARLwGIPETKINNYVKKSmEALNLESYADKYIYT--------YSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPV 1513
Cdd:TIGR02857 417 RL--ARP-DASDAEIREALERA-GLDEFVAALPQGLDTpigeggagLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492
|
170 180 190
....*....|....*....|....*....|...
gi 1387244451 1514 ARRLLWNAVTRTREsGKAIIITSHS---MEECD 1543
Cdd:TIGR02857 493 TEAEVLEALRALAQ-GRTVLLVTHRlalAALAD 524
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
530-704 |
1.24e-06 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 51.18 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKDMVQV-----RKSLGLCPQDDILFHhLTV 604
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAtrsrnRYSVAYAAQKPWLLN-ATV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 605 SEHLYFycvikGVPPEIQ---------SKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSG 675
Cdd:cd03290 96 EENITF-----GSPFNKQrykavtdacSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSA 170
|
170 180 190
....*....|....*....|....*....|....
gi 1387244451 676 M-----DPVSRRFTWDVLQKHKenRTVLLTTHHM 704
Cdd:cd03290 171 LdihlsDHLMQEGILKFLQDDK--RTLVLVTHKL 202
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
520-720 |
1.53e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 52.94 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 520 FTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYisgydiSKDMVQVRKS---LGLCPQDD 596
Cdd:PRK10261 22 FMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ------CDKMLLRRRSrqvIELSEQSA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 597 ILFHHL--------------------TVSEHLYFYCVI-KGVPPEIQSKEINKMLISFGLIEKHDALAK---SLSGGMKR 652
Cdd:PRK10261 96 AQMRHVrgadmamifqepmtslnpvfTVGEQIAESIRLhQGASREEAMVEAKRMLDQVRIPEAQTILSRyphQLSGGMRQ 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 653 KLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWD---VLQKHKEnRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK10261 176 RVMIAMALSCRPAVLIADEPTTALDVTIQAQILQlikVLQKEMS-MGVIFITHDMGVVAEIADRVLVMYQG 245
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1359-1565 |
1.89e-06 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 51.24 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1359 PVVLaVRNISVAIQKQECFGLLGLNGAGKTTT----FEILTGEEVASSGDVFVERLSITKNILKVR--SKIGYCPQ--FD 1430
Cdd:PRK10418 15 AQPL-VHGVSLTLQRGRVLALVGGSGSGKSLTcaaaLGILPAGVRQTAGRVLLDGKPVAPCALRGRkiATIMQNPRsaFN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1431 ALLDyMTAREIMIMYARlwGIPETkiNNYVKKSMEALNLESYA---DKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPS 1507
Cdd:PRK10418 94 PLHT-MHTHARETCLAL--GKPAD--DATLTAALEAVGLENAArvlKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1508 TGMDPV--ARRL-LWNAVTRTRESGkaIIITSHSMEECDALCTKLAIMVKGKFVCLGS-------PQH 1565
Cdd:PRK10418 169 TDLDVVaqARILdLLESIVQKRALG--MLLVTHDMGVVARLADDVAVMSHGRIVEQGDvetlfnaPKH 234
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1361-1565 |
2.83e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 52.17 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVF-----VERLSITKnILKVRSKIGYCPQ--FDALL 1433
Cdd:PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIfngqrIDTLSPGK-LQALRRDIQFIFQdpYASLD 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1434 DYMTAREIMIMYARLWGIPETK-INNYVKKSMEALNLE-SYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKaAAARVAWLLERVGLLpEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1512 PVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLG-------SPQH 1565
Cdd:PRK10261 496 VSIRGQIINLLLDlQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGprravfeNPQH 557
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
509-703 |
3.05e-06 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 52.12 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 509 AGIRIQHLykEFTLQNMTVLaVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVyisgydiskdmvqvrks 588
Cdd:COG4178 361 GALALEDL--TLRTPDGRPL-LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRI----------------- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 589 lGLCPQDDILFhhltVSEHLYFycvIKG----------VPPEIQSKEINKMLISFGL---IEKHDALA---KSLSGGMKR 652
Cdd:COG4178 421 -ARPAGARVLF----LPQRPYL---PLGtlreallypaTAEAFSDAELREALEAVGLghlAERLDEEAdwdQVLSLGEQQ 492
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 653 KLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTVLLTTHH 703
Cdd:COG4178 493 RLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLREELPGTTVISVGHR 543
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
494-720 |
3.11e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 52.17 E-value: 3.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 494 TVQNAYFEEEPVgliagIRIQHLYKEFTLQN-------MTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRP 566
Cdd:PRK10261 302 IEQDTVVDGEPI-----LQVRNLVTRFPLRSgllnrvtREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 567 TSGKVYISGYDI----SKDMVQVRKSLGLCPQDDI--LFHHLTVS----EHLYFYCVIKGvppEIQSKEINKMLISFGLI 636
Cdd:PRK10261 377 QGGEIIFNGQRIdtlsPGKLQALRRDIQFIFQDPYasLDPRQTVGdsimEPLRVHGLLPG---KAAAARVAWLLERVGLL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 637 EKHD-ALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRTV--LLTTHHMDEADVLGDR 713
Cdd:PRK10261 454 PEHAwRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIayLFISHDMAVVERISHR 533
|
....*..
gi 1387244451 714 IAIMAKG 720
Cdd:PRK10261 534 VAVMYLG 540
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
1333-1556 |
3.19e-06 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 50.58 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1333 RILDNPQESLNSIVLIKELIKVYFskpvvlAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVfvERLSI 1412
Cdd:PRK13546 15 RIYRTNKERMKDALIPKHKNKTFF------ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV--DRNGE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1413 TkNILKVRSkigycpqfdALLDYMTAREIMIMYARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAI 1492
Cdd:PRK13546 87 V-SVIAISA---------GLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSI 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 1493 ALMGKPSVIFLDEP-STGMDPVARRLLwNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:PRK13546 157 NITVNPDILVIDEAlSVGDQTFAQKCL-DKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGK 220
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
511-706 |
3.82e-06 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 51.43 E-value: 3.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDL----------------SLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYIS 574
Cdd:PRK13545 5 VKFEHVTKKYKMYNKPFDKLKDLffrskdgeyhyalnniSFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 575 GydiSKDMVQVrkSLGLCPQddilfhhLTVSEHLYFYCVIKGVPPEiQSKEINKMLISFGLIEKH-DALAKSLSGGMKRK 653
Cdd:PRK13545 85 G---SAALIAI--SSGLNGQ-------LTGIENIELKGLMMGLTKE-KIKEIIPEIIEFADIGKFiYQPVKTYSSGMKSR 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 654 LSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKEN-RTVLLTTHHMDE 706
Cdd:PRK13545 152 LGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQgKTIFFISHSLSQ 205
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1358-1565 |
3.88e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 51.78 E-value: 3.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1358 KPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLsitknILKVRSK--IGYCPQFDALLDY 1435
Cdd:PRK10261 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM-----LLRRRSRqvIELSEQSAAQMRH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1436 MTAREIMIMYARlwgiPETKINNY-------------------------VKKSMEALNL---ESYADKYIYTYSGGNKRR 1487
Cdd:PRK10261 101 VRGADMAMIFQE----PMTSLNPVftvgeqiaesirlhqgasreeamveAKRMLDQVRIpeaQTILSRYPHQLSGGMRQR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1488 LSTAIALMGKPSVIFLDEPSTGMD-PVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGS---- 1562
Cdd:PRK10261 177 VMIAMALSCRPAVLIADEPTTALDvTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSveqi 256
|
....*.
gi 1387244451 1563 ---PQH 1565
Cdd:PRK10261 257 fhaPQH 262
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
1361-1538 |
4.35e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 49.10 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1361 VLAVRNISVAIQKQECFGLL------------GLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILKVRSKIGYcpQ 1428
Cdd:PRK13541 1 MLSLHQLQFNIEQKNLFDLSitflpsaityikGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH--N 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1429 FDALLDyMTAREIMIMYARLWGIPETkinnyVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPST 1508
Cdd:PRK13541 79 LGLKLE-MTVFENLKFWSEIYNSAET-----LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152
|
170 180 190
....*....|....*....|....*....|
gi 1387244451 1509 GMDPVARRLLWNAVTRTRESGKAIIITSHS 1538
Cdd:PRK13541 153 NLSKENRDLLNNLIVMKANSGGIVLLSSHL 182
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
527-720 |
4.44e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 51.27 E-value: 4.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 527 VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDI----SKDMVQ-----VRKSLGLCPQddi 597
Cdd:PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIdfksSKEALEngismVHQELNLVLQ--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 598 lfhhLTVSEHLYF--YcVIKG--VPPEIQSKEINKMLISFGL-IEKHDALAKsLSGGMKRKLSIIIALIGGSKVVILDEP 672
Cdd:PRK10982 88 ----RSVMDNMWLgrY-PTKGmfVDQDKMYRDTKAIFDELDIdIDPRAKVAT-LSVSQMQMIEIAKAFSYNAKIVIMDEP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 673 TSGM--DPVSRRFTwdVLQKHKENRT-VLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK10982 162 TSSLteKEVNHLFT--IIRKLKERGCgIVYISHKMEEIFQLCDEITILRDG 210
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1344-1574 |
4.47e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 49.91 E-value: 4.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1344 SIVLIKELiKVYFSKPVVLavRNISVAIQKQECFGLLGLNGAGKTTTFEILTG-----EEVASSGDVFVERLSITK-NIL 1417
Cdd:PRK14247 2 NKIEIRDL-KVSFGQVEVL--DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRlielyPEARVSGEVYLDGQDIFKmDVI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1418 KVRSKIGYCPQFDALLDYMTAREIMIMYARLWGIPETK--INNYVKKSMEALNL----ESYADKYIYTYSGGNKRRLSTA 1491
Cdd:PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKkeLQERVRWALEKAQLwdevKDRLDAPAGKLSGGQQQRLCIA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1492 IALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESgKAIIITSHSMEECDALCTKLAIMVKGKFVCLG-------SPQ 1564
Cdd:PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGptrevftNPR 237
|
250
....*....|...
gi 1387244451 1565 H-LKNKF--GNVY 1574
Cdd:PRK14247 238 HeLTEKYvtGRLY 250
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1363-1556 |
4.68e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 51.27 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSItKN-------------ILKVRSKIGYCPQF 1429
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKI-NNhnaneainhgfalVTEERRSTGIYAYL 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1430 DALLDYMTAReiMIMYARLWGI-PETKINNYVKKSMEALNLESYADK-YIYTYSGGNKRRLSTAIALMGKPSVIFLDEPS 1507
Cdd:PRK10982 342 DIGFNSLISN--IRNYKNKVGLlDNSRMKSDTQWVIDSMRVKTPGHRtQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1387244451 1508 TGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:PRK10982 420 RGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
532-707 |
5.65e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 50.78 E-value: 5.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 532 DLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYrPTS--------GKVYISG---YDISKDMVQVRKSLGL-----CPQD 595
Cdd:PRK10938 278 NLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGysndltlfGRRRGSGetiWDIKKHIGYVSSSLHLdyrvsTSVR 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 596 DILFHHLTVSEHLYfycviKGVPpEIQSKEINKMLISFGLiekHDALAK----SLSGGMKRKLSIIIALIGGSKVVILDE 671
Cdd:PRK10938 357 NVILSGFFDSIGIY-----QAVS-DRQQKLAQQWLDILGI---DKRTADapfhSLSWGQQRLALIVRALVKHPTLLILDE 427
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1387244451 672 PTSGMDPVSR----RFTwDVLQKHKENRtVLLTTHHMDEA 707
Cdd:PRK10938 428 PLQGLDPLNRqlvrRFV-DVLISEGETQ-LLFVSHHAEDA 465
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
1367-1566 |
6.71e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 49.71 E-value: 6.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1367 ISVAIQKQECFGLLGLNGAGKTTTFEILT--GEEVAS---SGDVFVERLSI--TKNILKVRSKIGYCPQ---------FD 1430
Cdd:PRK14271 40 VSMGFPARAVTSLMGPTGSGKTTFLRTLNrmNDKVSGyrySGDVLLGGRSIfnYRDVLEFRRRVGMLFQrpnpfpmsiMD 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1431 ALLDYMTAREImimyarlwgIPETKINNYVKKSMEALNL-ESYADKYI---YTYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:PRK14271 120 NVLAGVRAHKL---------VPRKEFRGVAQARLTEVGLwDAVKDRLSdspFRLSGGQQQLLCLARTLAVNPEVLLLDEP 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1507 STGMDPVARRLLwNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:PRK14271 191 TSALDPTTTEKI-EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
1365-1545 |
8.68e-06 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 48.80 E-value: 8.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTGEE----VASSGDV----FVERLSITKNILKVRSkigycpqfdalldym 1436
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgtpVAGCVDVpdnqFGREASLIDAIGRKGD--------------- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 tareimimyarlwgipetkinnyVKKSMEALNLESYADKYIY-----TYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:COG2401 112 -----------------------FKDAVELLNAVGLSDAVLWlrrfkELSTGQKFRFRLALLLAERPKLLVIDEFCSHLD 168
|
170 180 190
....*....|....*....|....*....|....*
gi 1387244451 1512 P-VARRLLWNAVTRTRESGKAIIITSHSMEECDAL 1545
Cdd:COG2401 169 RqTAKRVARNLQKLARRAGITLVVATHHYDVIDDL 203
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
511-677 |
8.84e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 50.32 E-value: 8.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQnmtvLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGK------VYISGYDISKDMVQ 584
Cdd:TIGR03719 323 IEAENLTKAFGDK----LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTieigetVKLAYVDQSRDALD 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 585 VRKSL------GLcpqDDILFHHLTVSEHLY-----FycviKGVPpeiQSKEInkmlisfgliekhdalaKSLSGGMKRK 653
Cdd:TIGR03719 399 PNKTVweeisgGL---DIIKLGKREIPSRAYvgrfnF----KGSD---QQKKV-----------------GQLSGGERNR 451
|
170 180
....*....|....*....|....
gi 1387244451 654 LSIIIALIGGSKVVILDEPTSGMD 677
Cdd:TIGR03719 452 VHLAKTLKSGGNVLLLDEPTNDLD 475
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1379-1517 |
8.98e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 50.40 E-value: 8.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1379 LLGLNGAGKTTTFEILTGEEVAS-SGDV--FVERLSITKNILKVRSKIGYCPqfDAL-LDY---MTAREIMIM-YARLWG 1450
Cdd:PRK10938 291 IVGPNGAGKSTLLSLITGDHPQGySNDLtlFGRRRGSGETIWDIKKHIGYVS--SSLhLDYrvsTSVRNVILSgFFDSIG 368
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1451 IPETKINNYVKKSMEALNL----ESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRL 1517
Cdd:PRK10938 369 IYQAVSDRQQKLAQQWLDIlgidKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQL 439
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
1477-1543 |
9.07e-06 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 49.70 E-value: 9.07e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1477 IYTYSGGNKRRLSTAIALM---GKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECD 1543
Cdd:pfam13304 234 AFELSDGTKRLLALLAALLsalPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHSPLLLD 303
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
511-730 |
1.31e-05 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 49.68 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 511 IRIQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKT-TTLSILtGL----YRPTSGKVYISGYDIS----KD 581
Cdd:COG4172 7 LSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSIL-RLlpdpAAHPSGSILFDGQDLLglseRE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 582 MVQVR-KSLGLCPQD----------------DILFHHltvsehlyfycviKGVPPEIQSKEINKMLISFGLIEKHDALAK 644
Cdd:COG4172 86 LRRIRgNRIAMIFQEpmtslnplhtigkqiaEVLRLH-------------RGLSGAAARARALELLERVGIPDPERRLDA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 645 ---SLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRftwDVLQ-----KHKENRTVLLTTHhmDEADV--LGDRI 714
Cdd:COG4172 153 yphQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQA---QILDllkdlQRELGMALLLITH--DLGVVrrFADRV 227
|
250
....*....|....*...
gi 1387244451 715 AIMAKGTLQCCGST--IF 730
Cdd:COG4172 228 AVMRQGEIVEQGPTaeLF 245
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1479-1565 |
1.65e-05 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 48.38 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1479 TYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD-PVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKF 1557
Cdd:PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDvSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230
|
90
....*....|....*
gi 1387244451 1558 V-------CLGSPQH 1565
Cdd:PRK11701 231 VesgltdqVLDDPQH 245
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
545-677 |
1.67e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 50.12 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 545 LLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHHlTV-------SEH----LYfyc 612
Cdd:PLN03130 1270 IVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKfGLMDLRKVLGIIPQAPVLFSG-TVrfnldpfNEHndadLW--- 1345
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 613 vikgvppEIQSKEINKMLI---SFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMD 677
Cdd:PLN03130 1346 -------ESLERAHLKDVIrrnSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
516-708 |
1.79e-05 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 49.91 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 516 LYKEFTLQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydiskdmvqvrkSLGLCPQ- 594
Cdd:TIGR01271 430 FFSNFSLYVTPVL--KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQt 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 595 ---------DDILFhHLTVSEHLYfYCVIKGVPPE---IQSKEINKMLISFGLIekhdalakSLSGGMKRKLSIIIALIG 662
Cdd:TIGR01271 496 swimpgtikDNIIF-GLSYDEYRY-TSVIKACQLEediALFPEKDKTVLGEGGI--------TLSGGQRARISLARAVYK 565
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1387244451 663 GSKVVILDEPTSGMDPVSRRFTWD-VLQKHKENRTVLLTT---HHMDEAD 708
Cdd:TIGR01271 566 DADLYLLDSPFTHLDVVTEKEIFEsCLCKLMSNKTRILVTsklEHLKKAD 615
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
1346-1556 |
1.85e-05 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 48.14 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1346 VLIKELIKVYFSKPVVlavRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVerlsitknilkvrskiGY 1425
Cdd:PRK11247 13 LLLNAVSKRYGERTVL---NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA----------------GT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 CPQFDALLDymtaREIMIMYARLwgIPETKINNYV------------KKSMEALNLESYADKYIYTYSGGNKRRLSTAIA 1493
Cdd:PRK11247 74 APLAEARED----TRLMFQDARL--LPWKKVIDNVglglkgqwrdaaLQALAAVGLADRANEWPAALSGGQKQRVALARA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1494 LMGKPSVIFLDEPSTGMDPVAR-------RLLWnavtrtRESGKAIIITSHSMEECDALCTKLAIMVKGK 1556
Cdd:PRK11247 148 LIHRPGLLLLDEPLGALDALTRiemqdliESLW------QQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
568-704 |
1.85e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 49.64 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 568 SGKVYISGYDISK-DMVQVRKSLGLCPQDDILFHhLTVSEHLYFycvikgvPPEIQSKEINKMLISFGLIE--------K 638
Cdd:PTZ00265 1276 SGKILLDGVDICDyNLKDLRNLFSIVSQEPMLFN-MSIYENIKF-------GKEDATREDVKRACKFAAIDefieslpnK 1347
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 639 HDA----LAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQ--KHKENRTVLLTTHHM 704
Cdd:PTZ00265 1348 YDTnvgpYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVdiKDKADKTIITIAHRI 1419
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1366-1550 |
2.11e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 49.12 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1366 NISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVfverlSITKNIlkvrsKIGYC--PQFdALLDYMTAREIMI 1443
Cdd:PRK15064 19 NISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV-----SLDPNE-----RLGKLrqDQF-AFEEFTVLDTVIM 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1444 MYARLWGI----------PETKINNYvkksMEALNLES-YADKYIYT------------------YSG-------GNKRR 1487
Cdd:PRK15064 88 GHTELWEVkqerdriyalPEMSEEDG----MKVADLEVkFAEMDGYTaearagelllgvgipeeqHYGlmsevapGWKLR 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 1488 LSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNaVTRTRESgkAIIITSHSMEECDALCTKLA 1550
Cdd:PRK15064 164 VLLAQALFSNPDILLLDEPTNNLDINTIRWLED-VLNERNS--TMIIISHDRHFLNSVCTHMA 223
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
513-748 |
2.40e-05 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 48.26 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 513 IQHLYKEFTLQNMTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGL----YRPTSGKVYISGYDISK-DMVQVRK 587
Cdd:PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVtkdnWRVTADRMRFDDIDLLRlSPRERRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 588 SLGlcPQDDILFHH----LTVSEHLYFYcVIKGVPP-----------EIQSKEINKMLISFGlIEKHDALAKS----LSG 648
Cdd:PRK15093 86 LVG--HNVSMIFQEpqscLDPSERVGRQ-LMQNIPGwtykgrwwqrfGWRKRRAIELLHRVG-IKDHKDAMRSfpyeLTE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 649 GMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENR--TVLLTTHHMDEADVLGDRIAIMAkgtlqcCG 726
Cdd:PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNntTILLISHDLQMLSQWADKINVLY------CG 235
|
250 260
....*....|....*....|..
gi 1387244451 727 STiflkkVYGVGYHLIIVKDHH 748
Cdd:PRK15093 236 QT-----VETAPSKELVTTPHH 252
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1357-1537 |
2.45e-05 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 47.15 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1357 SKPVVLAVRNISVAIQKQECFGLL-------------GLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNilkVRSK- 1422
Cdd:PRK13543 7 TAPPLLAAHALAFSRNEEPVFGPLdfhvdageallvqGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRf 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1423 IGYCPQFDALLDYMTAREIMIMYARLWGIPETKINNyvkKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIF 1502
Cdd:PRK13543 84 MAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPG---SALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160
|
170 180 190
....*....|....*....|....*....|....*
gi 1387244451 1503 LDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSH 1537
Cdd:PRK13543 161 LDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
514-674 |
2.56e-05 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 48.77 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 514 QHLYKEFTlqnmTVLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYrPT---SGKVYISGYDIS----KDmvQVR 586
Cdd:PRK13549 9 KNITKTFG----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHgtyEGEIIFEGEELQasniRD--TER 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 587 KSLGLCPQDDILFHHLTVSEHLYFYCVI--KGVP--PEIQSkEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIG 662
Cdd:PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEItpGGIMdyDAMYL-RAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK 160
|
170
....*....|..
gi 1387244451 663 GSKVVILDEPTS 674
Cdd:PRK13549 161 QARLLILDEPTA 172
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
539-717 |
3.54e-05 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 48.65 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 539 EGQITVLLGHNGAGKTTTLSILTGLYRPTSGKV-----------YISG---YDISKDMVQVRKSLGLCPQD-DILFHHL- 602
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYeeepswdevlkRFRGtelQNYFKKLYNGEIKVVHKPQYvDLIPKVFk 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 603 -TVSEhlyfycVIKGVPPEIQSKEINKMLisfGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR 681
Cdd:PRK13409 178 gKVRE------LLKKVDERGKLDEVVERL---GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQR 248
|
170 180 190
....*....|....*....|....*....|....*.
gi 1387244451 682 RFTWDVLQKHKENRTVLLTTHHMDEADVLGDRIAIM 717
Cdd:PRK13409 249 LNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIA 284
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
1363-1558 |
4.24e-05 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 48.17 E-value: 4.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1363 AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITKNILK-VRSKIGYCPQFDALLDYMTAREI 1441
Cdd:TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAsLRRQVALVSQDVVLFNDTIANNI 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1442 MimYARLWGIPETKInnyvKKSMEALNLESYADKY---IYT--------YSGGNKRRLSTAIALMGKPSVIFLDEPSTGM 1510
Cdd:TIGR02203 427 A--YGRTEQADRAEI----ERALAAAYAQDFVDKLplgLDTpigengvlLSGGQRQRLAIARALLKDAPILILDEATSAL 500
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1511 DPVARRLLWNAVTRTREsGKAIIITSH---SMEECDalctKLAIMVKGKFV 1558
Cdd:TIGR02203 501 DNESERLVQAALERLMQ-GRTTLVIAHrlsTIEKAD----RIVVMDDGRIV 546
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
1379-1562 |
4.54e-05 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 47.56 E-value: 4.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1379 LLGLNGAGKTTTFEILTGEEVASSGdvfveRLSITKNIL-----KV-----RSKIGYCPQfdallDymtareimimyARL 1448
Cdd:PRK11144 29 IFGRSGAGKTSLINAISGLTRPQKG-----RIVLNGRVLfdaekGIclppeKRRIGYVFQ-----D-----------ARL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1449 WgiPETKIN---NY-VKKSMEA--------LNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD-PVAR 1515
Cdd:PRK11144 88 F--PHYKVRgnlRYgMAKSMVAqfdkivalLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDlPRKR 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1387244451 1516 RLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGS 1562
Cdd:PRK11144 166 ELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
1354-1538 |
5.05e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 45.78 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1354 VYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTT-TFEILTGE---EVASSGDVFVERLSITKNILKVRSKIGycpqf 1429
Cdd:cd03238 1 LTVSGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTlVNEGLYASgkaRLISFLPKFSRNKLIFIDQLQFLIDVG----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1430 dalLDYMTAREIMimyarlwgipetkinnyvkksmealnlesyadkyiYTYSGGNKRRLSTA--IALMGKPSVIFLDEPS 1507
Cdd:cd03238 76 ---LGYLTLGQKL-----------------------------------STLSGGELQRVKLAseLFSEPPGTLFILDEPS 117
|
170 180 190
....*....|....*....|....*....|.
gi 1387244451 1508 TGMDPVARRLLWNAVTRTRESGKAIIITSHS 1538
Cdd:cd03238 118 TGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
500-717 |
5.38e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 47.86 E-value: 5.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 500 FEEEPVgliagiriqHLYKE--FTLQNMTVLAvqdlslnlyEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKV------ 571
Cdd:COG1245 75 LEEDPV---------HRYGEngFRLYGLPVPK---------KGKVTGILGPNGIGKSTALKILSGELKPNLGDYdeepsw 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 572 -----YISG---YDISKDMVQVRKSLGLCPQ--DDI-LFHHLTVSEhlyfycVIKGVPPEIQSKEINKMLisfGLIEKHD 640
Cdd:COG1245 137 devlkRFRGtelQDYFKKLANGEIKVAHKPQyvDLIpKVFKGTVRE------LLEKVDERGKLDELAEKL---GLENILD 207
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 641 ALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDpVSRRFTW-DVLQK-HKENRTVLLTTHHMDEADVLGDRIAIM 717
Cdd:COG1245 208 RDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLD-IYQRLNVaRLIRElAEEGKYVLVVEHDLAILDYLADYVHIL 285
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1379-1511 |
6.35e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.18 E-value: 6.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1379 LLGLNGAGKTTTFEILTGEEVASSGDV--FVERLSITKNILK--VRSKIGYCPQFDALLDYMTAREIMIMYARLWGiPET 1454
Cdd:TIGR00956 92 VLGRPGSGCSTLLKTIASNTDGFHIGVegVITYDGITPEEIKkhYRGDVVYNAETDVHFPHLTVGETLDFAARCKT-PQN 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1455 KINN-----YVKKsMEALNLESYA----------DKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:TIGR00956 171 RPDGvsreeYAKH-IADVYMATYGlshtrntkvgNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
517-721 |
6.93e-05 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 46.77 E-value: 6.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 517 YKEFTLQNMTVLavQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydiskdmvqvrkSLGLCPQ-- 594
Cdd:cd03291 42 FSNLCLVGAPVL--KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------RISFSSQfs 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 595 --------DDILFhHLTVSEHLYfYCVIKGVPPE---IQSKEINKMLISFGLIekhdalakSLSGGMKRKLSIIIALIGG 663
Cdd:cd03291 108 wimpgtikENIIF-GVSYDEYRY-KSVVKACQLEediTKFPEKDNTVLGEGGI--------TLSGGQRARISLARAVYKD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387244451 664 SKVVILDEPTSGMDPVSRRFTWD-VLQKHKENRTVLLTTHHMDEADVlGDRIAIMAKGT 721
Cdd:cd03291 178 ADLYLLDSPFGYLDVFTEKEIFEsCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGS 235
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
530-733 |
7.00e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 48.05 E-value: 7.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPtsgkvyisgydISKDMVQVRKSLGLCPQDDILFHhLTVSEHLY 609
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-----------AETSSVVIRGSVAYVPQVSWIFN-ATVRENIL 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 610 FYCVIKgvpPEIQSKEINKMLIS--FGLIEKHDAL-----AKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRR 682
Cdd:PLN03232 701 FGSDFE---SERYWRAIDVTALQhdLDLLPGRDLTeigerGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAH 777
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 683 FTWDVLQKHK-ENRTVLLTTHHMDEADVLgDRIAIMAKGTLQCCGSTIFLKK 733
Cdd:PLN03232 778 QVFDSCMKDElKGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGTFAELSK 828
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
518-720 |
7.74e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 47.42 E-value: 7.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 518 KEFTLQ--NMTVL---AVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGYDISKD----------- 581
Cdd:PRK10982 247 GEVILEvrNLTSLrqpSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHnaneainhgfa 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 582 -MVQVRKSLGLCPQDDILFHHLTVSehlyfycvikgvppeiqskeINKMLISFGLIEK--------------------HD 640
Cdd:PRK10982 327 lVTEERRSTGIYAYLDIGFNSLISN--------------------IRNYKNKVGLLDNsrmksdtqwvidsmrvktpgHR 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 641 ALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDpVSRRFT--WDVLQKHKENRTVLLTTHHMDEADVLGDRIAIMA 718
Cdd:PRK10982 387 TQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID-VGAKFEiyQLIAELAKKDKGIIIISSEMPELLGITDRILVMS 465
|
..
gi 1387244451 719 KG 720
Cdd:PRK10982 466 NG 467
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
540-708 |
7.83e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 44.67 E-value: 7.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 540 GQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYIsgydiskdmvqvrkslglcpqddilfhhltvsehlyfycvikgvpp 619
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY---------------------------------------------- 35
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 620 eIQSKEINKMLISFGLIEKHDALAKSLSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSR-------RFTWDVLQKHK 692
Cdd:smart00382 36 -IDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEallllleELRLLLLLKSE 114
|
170
....*....|....*.
gi 1387244451 693 ENRTVLLTTHHMDEAD 708
Cdd:smart00382 115 KNLTVILTTNDEKDLG 130
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
1348-1565 |
8.43e-05 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 46.62 E-value: 8.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1348 IKELiKVYFS----------KPVVL-AVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVfverLSITKNI 1416
Cdd:PRK15079 11 VADL-KVHFDikdgkqwfwqPPKTLkAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV----AWLGKDL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1417 LK--------VRSKIGYCPQfDALLDY---MTAREIM-----IMYARLwgiPETKINNYVKKSMEALNL-ESYADKYIYT 1479
Cdd:PRK15079 86 LGmkddewraVRSDIQMIFQ-DPLASLnprMTIGEIIaeplrTYHPKL---SRQEVKDRVKAMMLKVGLlPNLINRYPHE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1480 YSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQlQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241
|
250
....*....|....
gi 1387244451 1559 CLGS-------PQH 1565
Cdd:PRK15079 242 ELGTydevyhnPLH 255
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1343-1547 |
8.62e-05 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 45.86 E-value: 8.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1343 NSIVLikELIKVYFSKPVVLAVRNISVAIQKQEcFGLL-GLNGAGKTTTFEILTGEEVASSGDVFVERLSI-TKNILKVR 1420
Cdd:PRK10247 4 NSPLL--QLQNVGYLAGDAKILNNISFSLRAGE-FKLItGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIsTLKPEIYR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1421 SKIGYCPQFDALLDYmTAREIMIMyarLWGI----PETKInnyVKKSMEALNL-ESYADKYIYTYSGGNKRRLSTAIALM 1495
Cdd:PRK10247 81 QQVSYCAQTPTLFGD-TVYDNLIF---PWQIrnqqPDPAI---FLDDLERFALpDTILTKNIAELSGGEKQRISLIRNLQ 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1496 GKPSVIFLDEPSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEE---CDALCT 1547
Cdd:PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRyVREQNIAVLWVTHDKDEinhADKVIT 209
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1364-1563 |
8.79e-05 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 46.36 E-value: 8.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGE--------EVASSGDVFVE----------RLSITKNILKVRSKigy 1425
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDltgggaprGARVTGDVTLNgeplaaidapRLARLRAVLPQAAQ--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1426 cPQFDalldyMTAREIMIM----YARLWGIPETKINNYVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIAL------- 1494
Cdd:PRK13547 94 -PAFA-----FSAREIVLLgrypHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLaqlwpph 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387244451 1495 --MGKPSVIFLDEPSTGMDPVAR-RLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSP 1563
Cdd:PRK13547 168 daAQPPRYLLLDEPTAALDLAHQhRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
644-702 |
9.96e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 44.66 E-value: 9.96e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 644 KSLSGGMKRKLSIIIAL----IGGSKVVILDEPTSGMDPVSRRFTWDVLQKH-KENRTVLLTTH 702
Cdd:cd03227 76 LQLSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQALAEAILEHlVKGAQVIVITH 139
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
1320-1540 |
1.06e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 47.21 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1320 GESEDEDVQNERNRILDNPQESLnsivlikelIKVYFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEV 1399
Cdd:TIGR01271 407 GELFEKIKQNNKARKQPNGDDGL---------FFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1400 ASSGDVfverlsitknilKVRSKIGYCPQFDALLDyMTAREIMImyarlWGIP--ETKINNYVKKSM--EALNLESYADK 1475
Cdd:TIGR01271 478 PSEGKI------------KHSGRISFSPQTSWIMP-GTIKDNII-----FGLSydEYRYTSVIKACQleEDIALFPEKDK 539
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1476 YIY-----TYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSME 1540
Cdd:TIGR01271 540 TVLgeggiTLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLE 609
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
531-677 |
2.82e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 45.65 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 531 QDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYIS-----GY---DISKD----------MVQVRKslglc 592
Cdd:PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSenaniGYyaqDHAYDfendltlfdwMSQWRQ----- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 593 PQDDILfhhltvsehlyfycVIKGVppeiqskeINKMLISFGLIEKHdalAKSLSGGMKRKLSIIIALIGGSKVVILDEP 672
Cdd:PRK15064 411 EGDDEQ--------------AVRGT--------LGRLLFSQDDIKKS---VKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465
|
....*
gi 1387244451 673 TSGMD 677
Cdd:PRK15064 466 TNHMD 470
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
1355-1577 |
3.08e-04 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 45.48 E-value: 3.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1355 YFSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERLSITK-NILKVRSKIGYCPQfDALL 1433
Cdd:TIGR00958 488 YPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQyDHHYLHRQVALVGQ-EPVL 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1434 DYMTAREiMIMYArLWGIPETKINNYVKKSMeALNLESYADKYIYT--------YSGGNKRRLSTAIALMGKPSVIFLDE 1505
Cdd:TIGR00958 567 FSGSVRE-NIAYG-LTDTPDEEIMAAAKAAN-AHDFIMEFPNGYDTevgekgsqLSGGQKQRIAIARALVRKPRVLILDE 643
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1506 PSTGMDPVARRLLWNavTRTRESGKAIIITS--HSMEECDalctKLAIMVKGKFVCLGSPQHLKNKFGNVYILK 1577
Cdd:TIGR00958 644 ATSALDAECEQLLQE--SRSRASRTVLLIAHrlSTVERAD----QILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
527-674 |
3.31e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 45.17 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 527 VLAVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYrPT---SGKVYISG-----YDIS----KDMVQVRKSLGLCPQ 594
Cdd:NF040905 14 VKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVY-PHgsyEGEILFDGevcrfKDIRdseaLGIVIIHQELALIPY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 595 ddilfhhLTVSEHLYF--YCVIKGVppeIQSKEINK----MLISFGLIEKHDALAKSLSGGMKRKLSIIIALiggSKVV- 667
Cdd:NF040905 93 -------LSIAENIFLgnERAKRGV---IDWNETNRrareLLAKVGLDESPDTLVTDIGVGKQQLVEIAKAL---SKDVk 159
|
....*....
gi 1387244451 668 --ILDEPTS 674
Cdd:NF040905 160 llILDEPTA 168
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
1364-1542 |
3.45e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 45.67 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTgEEVASSGDVFVERLSITKNIL-KVRSKIGYCPQfDALLDYMTAREIM 1442
Cdd:TIGR01271 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGVSWNSVTLqTWRKAFGVIPQ-KVFIFSGTFRKNL 1312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1443 IMYARlWGIPET-KINNYVK-KSMealnLESYADKYI-------YTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPV 1513
Cdd:TIGR01271 1313 DPYEQ-WSDEEIwKVAEEVGlKSV----IEQFPDKLDfvlvdggYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPV 1387
|
170 180 190
....*....|....*....|....*....|..
gi 1387244451 1514 ARRLLWNAVTRTReSGKAIIITSHSME---EC 1542
Cdd:TIGR01271 1388 TLQIIRKTLKQSF-SNCTVILSEHRVEallEC 1418
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
1364-1538 |
4.95e-04 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 42.53 E-value: 4.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1364 VRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVfverlsitknILKVRSKIGYCPQfdalLDYMTA---RE 1440
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI----------GMPEGEDLLFLPQ----RPYLPLgtlRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1441 IMImYArlWgipetkinnyvkksMEALnlesyadkyiytySGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWN 1520
Cdd:cd03223 83 QLI-YP--W--------------DDVL-------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
|
170
....*....|....*...
gi 1387244451 1521 AVtrtRESGKAIIITSHS 1538
Cdd:cd03223 133 LL---KELGITVISVGHR 147
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1365-1537 |
5.46e-04 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 42.87 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1365 RNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGDVFVERlsitKNILKVRSK-------IGYCPQFDALLdymT 1437
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG----EPIRRQRDEyhqdllyLGHQPGIKTEL---T 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1438 AREIMIMYARLWGIPETKInnyVKKSMEALNLESYADKYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPST-----GMDP 1512
Cdd:PRK13538 91 ALENLRFYQRLHGPGDDEA---LWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTaidkqGVAR 167
|
170 180
....*....|....*....|....*
gi 1387244451 1513 VARRLLWNAvtrtrESGKAIIITSH 1537
Cdd:PRK13538 168 LEALLAQHA-----EQGGMVILTTH 187
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
533-677 |
6.11e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 44.39 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 533 LSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYIS-----GYDISKDMVQVRKslglcpqDDILFHHLTvseh 607
Cdd:PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAkgiklGYFAQHQLEFLRA-------DESPLQHLA---- 399
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 608 lyfycvikGVPPEIQSKEINKMLISFGLI-EKHDALAKSLSGGMKRKLsiIIALIGGSK--VVILDEPTSGMD 677
Cdd:PRK10636 400 --------RLAPQELEQKLRDYLGGFGFQgDKVTEETRRFSGGEKARL--VLALIVWQRpnLLLLDEPTNHLD 462
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
521-727 |
6.25e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 44.94 E-value: 6.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 521 TLQNMTVLAVQD-------LSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYISGydiskdmvqvrkSLGLCP 593
Cdd:TIGR00957 638 TVHNATFTWARDlpptlngITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SVAYVP 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 594 QDDILfHHLTVSEHLYFYCVIKgvPPEIQSK-EINKMLISFGLIEKHDAL-----AKSLSGGMKRKLSIIIALIGGSKVV 667
Cdd:TIGR00957 706 QQAWI-QNDSLRENILFGKALN--EKYYQQVlEACALLPDLEILPSGDRTeigekGVNLSGGQKQRVSLARAVYSNADIY 782
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 668 ILDEPTSGMDPVSRRFTWDVLQKHK---ENRTVLLTTHHMD---EADVlgdrIAIMAKGTLQCCGS 727
Cdd:TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEgvlKNKTRILVTHGISylpQVDV----IIVMSGGKISEMGS 844
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
1356-1540 |
6.75e-04 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 43.69 E-value: 6.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1356 FSKPVVLAVRNISVAIQKQECFGLLGLNGAGKTTTFEILTGEEVASSGdvfverlsitknILKVRSKIGYCPQFDALLDy 1435
Cdd:cd03291 45 LCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG------------KIKHSGRISFSSQFSWIMP- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1436 MTAREIMImyarlWGIP--ETKINNYVKKSMEALNLESYADK-YI------YTYSGGNKRRLSTAIALMGKPSVIFLDEP 1506
Cdd:cd03291 112 GTIKENII-----FGVSydEYRYKSVVKACQLEEDITKFPEKdNTvlgeggITLSGGQRARISLARAVYKDADLYLLDSP 186
|
170 180 190
....*....|....*....|....*....|....
gi 1387244451 1507 STGMDPVARRLLWNAVTRTRESGKAIIITSHSME 1540
Cdd:cd03291 187 FGYLDVFTEKEIFESCVCKLMANKTRILVTSKME 220
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1310-1511 |
1.02e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 43.57 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1310 NKDRVSK--ELSgeSEDEDVQNERNRILDNPQESLNSIVL-IKELIKVYFSKpvvLAVRNISVAIQKQECFGLLGLNGAG 1386
Cdd:PRK11819 288 SKARLARyeELL--SEEYQKRNETNEIFIPPGPRLGDKVIeAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAG 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1387 KTTTFEILTGEEVASSGDVfveRLSITknilkVrsKIGYCPQF-DALLDYMTareimimyarLW-----GIPETKINNYV 1460
Cdd:PRK11819 363 KSTLFKMITGQEQPDSGTI---KIGET-----V--KLAYVDQSrDALDPNKT----------VWeeisgGLDIIKVGNRE 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1387244451 1461 KKS---MEALNLESyAD--KYIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMD 1511
Cdd:PRK11819 423 IPSrayVGRFNFKG-GDqqKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
1491-1569 |
1.08e-03 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 42.97 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1491 AIALMGKPSVIFLDEPSTGMDPVAR----RLLwNAVTRTResGKAIIITSHSMEECDALCTKLAIMVKGKFVCLGSPQHL 1566
Cdd:COG4170 170 AMAIANQPRLLIADEPTNAMESTTQaqifRLL-ARLNQLQ--GTSILLISHDLESISQWADTITVLYCGQTVESGPTEQI 246
|
...
gi 1387244451 1567 KNK 1569
Cdd:COG4170 247 LKS 249
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
545-677 |
1.12e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 43.70 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 545 LLGHNGAGKTTTLSILTGLYRPTSGKVYISGydiskdmvQVRksLGLCPQddilfHH-----LTVSEHLYFYCVIKGVPp 619
Cdd:PLN03073 540 MVGPNGIGKSTILKLISGELQPSSGTVFRSA--------KVR--MAVFSQ-----HHvdgldLSSNPLLYMMRCFPGVP- 603
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 620 eiqSKEINKMLISFGlIEKHDALAK--SLSGGMKRKLSIIIALIGGSKVVILDEPTSGMD 677
Cdd:PLN03073 604 ---EQKLRAHLGSFG-VTGNLALQPmyTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
1481-1566 |
1.17e-03 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 43.66 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1481 SGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVA-RRLLwnAVTRTRESGKAIIITSH---SMEECDALCtklaIMVKGK 1556
Cdd:PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETeRQIL--ELLAEHAQNKTVLMITHrltGLEQFDRIC----VMDNGQ 550
|
90
....*....|
gi 1387244451 1557 FVCLGSPQHL 1566
Cdd:PRK11160 551 IIEQGTHQEL 560
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1481-1558 |
1.54e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 43.24 E-value: 1.54e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 1481 SGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSHSMEECDALCTKLAIMVKGKFV 1558
Cdd:NF040905 406 SGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGRIT 483
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
1362-1574 |
2.37e-03 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 43.01 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1362 LAVRNISVAIQKQECFGLLGLNGAGKTTT----FEILTgeevASSGDVFVERLSITK-NILKVRSKIGYCPQfDALLDYM 1436
Cdd:TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLtlglFRINE----SAEGEIIIDGLNIAKiGLHDLRFKITIIPQ-DPVLFSG 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1437 TAREIMIMYARL------WGIPETKINNYVKKSMEALNLESYADKyiYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGM 1510
Cdd:TIGR00957 1375 SLRMNLDPFSQYsdeevwWALELAHLKTFVSALPDKLDHECAEGG--ENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387244451 1511 DPVARRLLwNAVTRTRESGKAIIITSHSMEECDALcTKLAIMVKGKFVCLGSPQHLKNKFGNVY 1574
Cdd:TIGR00957 1453 DLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPSNLLQQRGIFY 1514
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
530-702 |
2.41e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 42.30 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLyEGQITVLLGHNGAGKTTTLSILTGLYRPTSG-KVYISGYDISKDMVQVRKSLGLC---------------- 592
Cdd:COG3593 14 IKDLSIEL-SDDLTVLVGENNSGKSSILEALRLLLGPSSSrKFDEEDFYLGDDPDLPEIEIELTfgsllsrllrlllkee 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 593 PQDDILFHHLTVSEHL-------------YFYCVIKGVPPEIQSKEINKM----LISFGLIEKHDALAKSLSGGMKRKLS 655
Cdd:COG3593 93 DKEELEEALEELNEELkealkalnellseYLKELLDGLDLELELSLDELEdllkSLSLRIEDGKELPLDRLGSGFQRLIL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1387244451 656 IIIALI-------GGSKVVILDEPTSGMDPVSRRFTWDVLQKHKENRT-VLLTTH 702
Cdd:COG3593 173 LALLSAlaelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNqVIITTH 227
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
1481-1537 |
2.69e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 40.42 E-value: 2.69e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387244451 1481 SGGNKRRLSTAIAL----MGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIITSH 1537
Cdd:cd03227 79 SGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITH 139
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
530-727 |
2.86e-03 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 41.35 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 530 VQDLSLNLYEGQITVLLGHNGAGKTTTLSI----LTGLYRP----TSGKVYISGYDISK-DMVQVRKSLGLCPQDDILFH 600
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKAlagdLTGGGAPrgarVTGDVTLNGEPLAAiDAPRLARLRAVLPQAAQPAF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 601 HLTVSEhlyfyCVIKGVPPEIQ---SKEINKMLISFGLIEKHDALA------KSLSGGMKRKLSIIIAL---------IG 662
Cdd:PRK13547 97 AFSARE-----IVLLGRYPHARragALTHRDGEIAWQALALAGATAlvgrdvTTLSGGELARVQFARVLaqlwpphdaAQ 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 663 GSKVVILDEPTSGMDPVSRRFTWDVLQK--HKENRTVLLTTHHMDEADVLGDRIAIMAKGTLQCCGS 727
Cdd:PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRlaRDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
1476-1535 |
5.39e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 41.55 E-value: 5.39e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1476 YIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTRTRESGKAIIIT 1535
Cdd:PTZ00265 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1481-1537 |
5.67e-03 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 41.33 E-value: 5.67e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1387244451 1481 SGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVtRTRESGKAIIITSH 1537
Cdd:COG4178 487 SLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLL-REELPGTTVISVGH 542
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1476-1566 |
6.55e-03 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 40.56 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387244451 1476 YIYTYSGGNKRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNAVTR-TRESGKAIIITSHSMEECDALCTKLAIMVK 1554
Cdd:PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRlNQNNNTTILLISHDLQMLSQWADKINVLYC 234
|
90
....*....|..
gi 1387244451 1555 GKFVCLGSPQHL 1566
Cdd:PRK15093 235 GQTVETAPSKEL 246
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
646-720 |
6.64e-03 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 40.50 E-value: 6.64e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387244451 646 LSGGMKRKLSIIIALIGGSKVVILDEPTSGMDPVSRRFTWDV---LQKhKENRTVLLTTHHMDEADVLGDRIAIMAKG 720
Cdd:PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELlleLQQ-KENMALVLITHDLALVAEAAHKIIVMYAG 230
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
511-573 |
9.69e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 40.49 E-value: 9.69e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387244451 511 IRIQHLYKEFtlqNMTVLaVQDLSLNLYEGQITVLLGHNGAGKTTTLSILTGLYRPTSGKVYI 573
Cdd:PRK11819 325 IEAENLSKSF---GDRLL-IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| |
