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Conserved domains on  [gi|67473371|ref|XP_652452|]
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ribosomal protein S29, putative [Entamoeba histolytica HM-1:IMSS]

Protein Classification

40S ribosomal protein S29( domain architecture ID 10015282)

40S ribosomal protein S29 is essential for rRNA processing and ribosome biogenesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 3-56 3.70e-25

40S ribosomal protein S29; Provisional


:

Pssm-ID: 185518  Cd Length: 54  Bit Score: 87.05  E-value: 3.70e-25
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 67473371   3 SYSIYNAHPRNYGNGSRTCRKCGARKGLIRKYGLDLCRRCFREKAVEIGFQKLD 56
Cdd:PTZ00218  1 MGHLFNTHPRTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
 
Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 3-56 3.70e-25

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 87.05  E-value: 3.70e-25
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 67473371   3 SYSIYNAHPRNYGNGSRTCRKCGARKGLIRKYGLDLCRRCFREKAVEIGFQKLD 56
Cdd:PTZ00218  1 MGHLFNTHPRTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 8-54 3.34e-06

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 38.93  E-value: 3.34e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 67473371    8 NAHPRNY--GNGSRTCRKCGARKGLIRKYGLdlCRRCFREKAVE---IGFQK 54
Cdd:pfam00253  3 QKLPRNSspTRIRNRCRLTGRPRGVIRKFGL--CRICFRELALKgeiPGVKK 52
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 21-47 6.11e-03

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 30.75  E-value: 6.11e-03
                       10        20
               ....*....|....*....|....*..
gi 67473371 21 CRKCGARKGLIRKYGLdlCRRCFREKA 47
Cdd:COG0199 23 CELTGRPRGYYRKFGL--CRICFRELA 47
 
Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 3-56 3.70e-25

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 87.05  E-value: 3.70e-25
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 67473371   3 SYSIYNAHPRNYGNGSRTCRKCGARKGLIRKYGLDLCRRCFREKAVEIGFQKLD 56
Cdd:PTZ00218  1 MGHLFNTHPRTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 10-56 2.79e-15

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 61.83  E-value: 2.79e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 67473371  10 HPRNYGNGSRTCRKCGARKGLIRKYGLDLCRRCFREKAVEIGFQKLD 56
Cdd:PRK05766  6 KKRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPKLGFKKYS 52
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 8-54 3.34e-06

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 38.93  E-value: 3.34e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 67473371    8 NAHPRNY--GNGSRTCRKCGARKGLIRKYGLdlCRRCFREKAVE---IGFQK 54
Cdd:pfam00253  3 QKLPRNSspTRIRNRCRLTGRPRGVIRKFGL--CRICFRELALKgeiPGVKK 52
rpsN PRK08061
type Z 30S ribosomal protein S14;
21-47 4.31e-03

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 31.38  E-value: 4.31e-03
                        10        20
                ....*....|....*....|....*..
gi 67473371  21 CRKCGARKGLIRKYGLdlCRRCFREKA 47
Cdd:PRK08061 24 CERCGRPHSVYRKFGL--CRICFRELA 48
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 21-47 6.11e-03

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 30.75  E-value: 6.11e-03
                       10        20
               ....*....|....*....|....*..
gi 67473371 21 CRKCGARKGLIRKYGLdlCRRCFREKA 47
Cdd:COG0199 23 CELTGRPRGYYRKFGL--CRICFRELA 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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