NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|255929148|ref|YP_003097460|]
View 

conserved hypothetical cyanobacterial protein [Synechococcus phage S-RSM4]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CP12 super family cl14670
CP12 domain; The function of this domain is unknown, it does contain three conserved cysteines ...
 41-70 2.29e-10

CP12 domain; The function of this domain is unknown, it does contain three conserved cysteines and a histidine, that suggests this may be a zinc binding domain (Bateman A pers. observation). This domain is found associated with CBS domains in some proteins pfam00571.


The actual alignment was detected with superfamily member COG5761:

Pssm-ID: 472702  Cd Length: 74  Bit Score: 50.69  E-value: 2.29e-10
                        10        20        30
                ....*....|....*....|....*....|
gi 255929148 41 RHPEDHHDPSSLELYCDNNPSAPECLVYDD 70
Cdd:COG5761  45 HQRQAKPRKTSLEQYCDENPDAPECRIYDD 74
 
Name Accession Description Interval E-value
Cp12 COG5761
Cyanobacterial/chloroplast protein CP12, regulates Calvin cycle by forming a complex with ...
 41-70 2.29e-10

Cyanobacterial/chloroplast protein CP12, regulates Calvin cycle by forming a complex with GAPDH and phosphoribulokinase [Energy production and conversion];


Pssm-ID: 444471  Cd Length: 74  Bit Score: 50.69  E-value: 2.29e-10
                        10        20        30
                ....*....|....*....|....*....|
gi 255929148 41 RHPEDHHDPSSLELYCDNNPSAPECLVYDD 70
Cdd:COG5761  45 HQRQAKPRKTSLEQYCDENPDAPECRIYDD 74
CP12 smart01093
CP12 domain;
4-70 3.14e-09

CP12 domain;


Pssm-ID: 198161  Cd Length: 72  Bit Score: 47.78  E-value: 3.14e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 255929148    4 IEQHIEADKEEL----ANPQLSPQRRRHIEGELEELEAYAERHPED-HHDPSSLELYCDNNPSAPECLVYDD 70
Cdd:smart01093  1 IDEHIQKAISEAraacAQYGGDSAKCRAAWDEVEELQAEASHHPDDkHKDPTSLELYCDENPDADECRVYDD 72
CP12 pfam02672
CP12 domain; The function of this domain is unknown, it does contain three conserved cysteines ...
 42-69 1.43e-07

CP12 domain; The function of this domain is unknown, it does contain three conserved cysteines and a histidine, that suggests this may be a zinc binding domain (Bateman A pers. observation). This domain is found associated with CBS domains in some proteins pfam00571.


Pssm-ID: 426915  Cd Length: 68  Bit Score: 43.36  E-value: 1.43e-07
                         10        20
                 ....*....|....*....|....*....
gi 255929148  42 HPED-HHDPSSLELYCDNNPSAPECLVYD 69
Cdd:pfam02672 40 HQRDkKHDKTSLEEYCDENPEAPECRIYD 68
 
Name Accession Description Interval E-value
Cp12 COG5761
Cyanobacterial/chloroplast protein CP12, regulates Calvin cycle by forming a complex with ...
 41-70 2.29e-10

Cyanobacterial/chloroplast protein CP12, regulates Calvin cycle by forming a complex with GAPDH and phosphoribulokinase [Energy production and conversion];


Pssm-ID: 444471  Cd Length: 74  Bit Score: 50.69  E-value: 2.29e-10
                        10        20        30
                ....*....|....*....|....*....|
gi 255929148 41 RHPEDHHDPSSLELYCDNNPSAPECLVYDD 70
Cdd:COG5761  45 HQRQAKPRKTSLEQYCDENPDAPECRIYDD 74
CP12 smart01093
CP12 domain;
4-70 3.14e-09

CP12 domain;


Pssm-ID: 198161  Cd Length: 72  Bit Score: 47.78  E-value: 3.14e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 255929148    4 IEQHIEADKEEL----ANPQLSPQRRRHIEGELEELEAYAERHPED-HHDPSSLELYCDNNPSAPECLVYDD 70
Cdd:smart01093  1 IDEHIQKAISEAraacAQYGGDSAKCRAAWDEVEELQAEASHHPDDkHKDPTSLELYCDENPDADECRVYDD 72
CP12 pfam02672
CP12 domain; The function of this domain is unknown, it does contain three conserved cysteines ...
 42-69 1.43e-07

CP12 domain; The function of this domain is unknown, it does contain three conserved cysteines and a histidine, that suggests this may be a zinc binding domain (Bateman A pers. observation). This domain is found associated with CBS domains in some proteins pfam00571.


Pssm-ID: 426915  Cd Length: 68  Bit Score: 43.36  E-value: 1.43e-07
                         10        20
                 ....*....|....*....|....*....
gi 255929148  42 HPED-HHDPSSLELYCDNNPSAPECLVYD 69
Cdd:pfam02672 40 HQRDkKHDKTSLEEYCDENPEAPECRIYD 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH