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Conserved domains on  [gi|567727145|ref|YP_008758445|]
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cytochrome b (mitochondrion) [Heptranchias perlo]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 3-381 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 680.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   3 MNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRN 82
Cdd:MTH00131   2 ASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  83 IHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLV 162
Cdd:MTH00131  82 LHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 163 QWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILILIL 242
Cdd:MTH00131 162 QWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 243 LTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRPFT 322
Cdd:MTH00131 242 LALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLT 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 567727145 323 QLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLFSWYENKMLNLN 381
Cdd:MTH00131 322 QFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 3-381 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 680.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   3 MNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRN 82
Cdd:MTH00131   2 ASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  83 IHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLV 162
Cdd:MTH00131  82 LHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 163 QWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILILIL 242
Cdd:MTH00131 162 QWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 243 LTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRPFT 322
Cdd:MTH00131 242 LALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLT 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 567727145 323 QLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLFSWYENKMLNLN 381
Cdd:MTH00131 322 QFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
10-374 1.02e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 377.59  E-value: 1.02e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  10 PLFKIINHaLIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGAS 89
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  90 LFFICIYLHIARGLYYGSYllKE----TWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWI 165
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 166 WGGFSVDNATLTRFFTLH-FLLPFLIIAMTMMHLLFLHETGSNNPLG----LNSDMDKISFHPYFLQKDISGFFILILIL 240
Cdd:COG1290  176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVF 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 241 ILLTLFLPNLltDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSIMILMFIPLLHISKQQSSIF 318
Cdd:COG1290  256 ALLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRY 333

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 567727145 319 RPFTQLTFWMFITDTIILTWIGGQPVeqPFILVGQIASILYFSLILIMMPLFSWYE 374
Cdd:COG1290  334 RPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.92e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 273.09  E-value: 1.92e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  10 PLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  90 LFFICIYLHIARGLYYGSY--LLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 567727145 168 GFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.90e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 257.31  E-value: 1.90e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   19 LIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGASLFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   99 IARGLYYG--SYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWIWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 567727145  177 TRFFTLHFLLPFLIIAMTMMHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-340 8.58e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.11  E-value: 8.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLL-HISKQQSSIFRPFTQLtfwMFITDTIILT 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATT---VFLFGTVVAL 141


                  ...
gi 567727145  338 WIG 340
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 3-381 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 680.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   3 MNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRN 82
Cdd:MTH00131   2 ASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  83 IHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLV 162
Cdd:MTH00131  82 LHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 163 QWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILILIL 242
Cdd:MTH00131 162 QWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 243 LTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRPFT 322
Cdd:MTH00131 242 LALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLT 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 567727145 323 QLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLFSWYENKMLNLN 381
Cdd:MTH00131 322 QFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
CYTB MTH00119
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 669.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   1 MTMNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  81 RNIHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 161 LVQWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILIL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 241 ILLTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 321 FTQLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLFSWYENKMLNL 380
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00074
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 647.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   1 MTMNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLI 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  81 RNIHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNT 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 161 LVQWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILIL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 241 ILLTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 321 FTQLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLFSWYENKMLNL 380
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00100
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 647.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   1 MTmNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLI 80
Cdd:MTH00100   1 MT-NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWII 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  81 RNIHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNT 160
Cdd:MTH00100  80 RYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 161 LVQWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILIL 240
Cdd:MTH00100 160 LVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 241 ILLTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRP 320
Cdd:MTH00100 240 MLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRP 319

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 567727145 321 FTQLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLFSWYENKML 378
Cdd:MTH00100 320 LSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00191
cytochrome b; Provisional
 5-369 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 636.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   5 IRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  85 ANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 165 IWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILILILLT 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 245 LFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRPFTQL 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 567727145 325 TFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPL 369
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 5-379 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 594.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   5 IRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  85 ANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQW 164
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 165 IWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILILILLT 244
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 245 LFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRPFTQL 324
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 567727145 325 TFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLFSWYENKMLN 379
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 594.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  12 FKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGASLF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  92 FICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWIWGGFSV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 172 DNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILILILLTLFLPNLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 252 TDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRPFTQLTFWMFIT 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 567727145 332 DTIILTWIGGQPVEQPFILVGQIASILYFSLILIMM 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 586.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   1 MTMNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLI 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  81 RNIHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNT 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 161 LVQWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILIL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 241 ILLTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 567727145 321 FTQLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFsLILIMMPLFSWYENKML 378
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF-LFFLILPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-375 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 543.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   1 MTMNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLI 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  81 RNIHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNT 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 161 LVQWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILIL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 241 ILLTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 567727145 321 FTQLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLFSWYEN 375
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDK 375
CYTB MTH00022
cytochrome b; Validated
 3-381 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 507.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   3 MNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRN 82
Cdd:MTH00022   1 MPLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  83 IHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLV 162
Cdd:MTH00022  81 LHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 163 QWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILILIL 242
Cdd:MTH00022 161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 243 LTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRPFT 322
Cdd:MTH00022 241 IVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLG 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 567727145 323 QLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLFSWYENKMLNLN 381
Cdd:MTH00022 321 RMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLFKN 379
CYTB MTH00053
cytochrome b; Provisional
 1-380 8.24e-180

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 504.24  E-value: 8.24e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   1 MTMNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLI 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  81 RNIHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNT 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 161 LVQWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILIL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 241 ILLTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 321 FTQLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLFSWYENKMLNL 380
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00224
cytochrome b; Provisional
 1-379 7.83e-175

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 491.74  E-value: 7.83e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   1 MTMNIRKTHPLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLI 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  81 RNIHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNT 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 161 LVQWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILIL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 241 ILLTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 567727145 321 FTQLTFWMFITDTIILTWIGGQPVEQPFILVGQIASILYFSLiLIMMPLFSWYENKMLN 379
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSY-FIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 3-381 3.68e-135

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 391.22  E-value: 3.68e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   3 MNIRKTHPLFKIinHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRN 82
Cdd:MTH00033   1 MRLRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRY 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  83 IHANGASLFFICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLV 162
Cdd:MTH00033  79 VHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIV 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 163 QWIWGGFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGFFILILILIL 242
Cdd:MTH00033 159 EWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVI 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 243 LTL--FLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRP 320
Cdd:MTH00033 239 IGIepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNP 318

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 567727145 321 FTQLTFWMFITDTIILTWIGGQPV-EQPFILVGQIASILYFSLILIMMPLFSWYENKMLNLN 381
Cdd:MTH00033 319 TGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFYEYN 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
10-374 1.02e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 377.59  E-value: 1.02e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  10 PLFKIINHaLIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGAS 89
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  90 LFFICIYLHIARGLYYGSYllKE----TWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWI 165
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 166 WGGFSVDNATLTRFFTLH-FLLPFLIIAMTMMHLLFLHETGSNNPLG----LNSDMDKISFHPYFLQKDISGFFILILIL 240
Cdd:COG1290  176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVF 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 241 ILLTLFLPNLltDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSIMILMFIPLLHISKQQSSIF 318
Cdd:COG1290  256 ALLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRY 333

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 567727145 319 RPFTQLTFWMFITDTIILTWIGGQPVeqPFILVGQIASILYFSLILIMMPLFSWYE 374
Cdd:COG1290  334 RPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 13-370 4.59e-125

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 364.26  E-value: 4.59e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  13 KIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGASLFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  93 ICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWIWGGFSVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 173 NATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISGfFILILILILLTLFLPNLLT 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 253 DADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLhisKQQSSIFRPFTQLTFWMFITD 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 567727145 333 TIILTWIGGQPVEQPFILVGQIASILYFSLILIMMPLF 370
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLMLFLF 354
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.92e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 273.09  E-value: 1.92e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  10 PLFKIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  90 LFFICIYLHIARGLYYGSY--LLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 567727145 168 GFSVDNATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 13-365 8.56e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 266.85  E-value: 8.56e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  13 KIINHALIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGASLFF 92
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  93 ICIYLHIARGLYYGSYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWIWGGFSVD 172
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 173 NATLTRFFTLHFLLPFLIIAMTMMHLLFLHETGSNNPLGL-NSDMDKISFHPYFLQKDISGFFILILILILLTLFLPNLL 251
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 252 TDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLFSIMILMFIPllhiSKQQSSIFRPFTQLTFWMFIT 331
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVS 317

                        330       340       350
                 ....*....|....*....|....*....|....
gi 567727145 332 DTIILTWIGGQPVEQPFILVGQIASILYFSLILI 365
Cdd:MTH00046 318 LFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.90e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 257.31  E-value: 1.90e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   19 LIDLPAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGASLFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   99 IARGLYYG--SYLLKETWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWIWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 567727145  177 TRFFTLHFLLPFLIIAMTMMHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 7.52e-45

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 149.94  E-value: 7.52e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLLHISKQQSSIFRPFTQLTFWMFITDTIILTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 567727145  339 IGGQPVEQPFILVGQIASILY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-355 1.59e-43

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 148.18  E-value: 1.59e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 208 NPLGLNSDMDKISFHPYFLQKDISGFFILILILILLTLFLPNLLTDADNFIPANPLVTPPHIKPEWYFLFAYAILRSIPN 287
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 567727145 288 KLGGVLALLFSIMILMFIPLLHISKQQSSiFRPFTQLTFWMFITDTIILTWIGGQPVEQPFILVGQIA 355
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 5.36e-43

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 149.48  E-value: 5.36e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  23 PAPSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGASLFFICIYLHIARG 102
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 103 LYYGSYLLKE--TWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWIWGGFSVDNATLTRFF 180
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|.
gi 567727145 181 TLH-FLLPFLIIAMTMMHLLFLHETGSNNPL 210
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-232 2.48e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 145.85  E-value: 2.48e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145   89 SLFFICIYLHIARGLYYGSYLLKE--TWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 567727145  167 GGFSVDNATLTRFFTLHF-LLPFLIIAMTMMHLLFLHETGSNNPLGLNSDMDKISFHPYFLQKDISG 232
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLF 147
petB CHL00070
cytochrome b6
 25-210 3.42e-39

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 139.09  E-value: 3.42e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  25 PSNISIWWNFGSLMILCLMIQIVTGLFLAMHYTPDISMAFSSVMHICHDVNYGWLIRNIHANGASLFFICIYLHIARGLY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 105 YGSYLLKE--TWNIGVILLILLMATAFMGYVLPWGQMSFWGATVITNLMSALPYIGNTLVQWIWGGFSVDNATLTRFFTL 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 567727145 183 H-FLLPFLIIAMTMMHLLFLHETGSNNPL 210
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 259-340 5.51e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.40  E-value: 5.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLL-HISKQQSSIFRPFTQLtfwMFITDTIILT 337
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATT---VFLIGTAVAL 141


                 ...
gi 567727145 338 WIG 340
Cdd:CHL00058 142 WLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 259-340 1.99e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.04  E-value: 1.99e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145 259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLL-HISKQQSSIFRPftqLTFWMFITDTIILT 337
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRP---VATAVFLFGTLVTL 142


                 ...
gi 567727145 338 WIG 340
Cdd:COG5679  143 WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-340 8.58e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.11  E-value: 8.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567727145  259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIMILMFIPLL-HISKQQSSIFRPFTQLtfwMFITDTIILT 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATT---VFLFGTVVAL 141


                  ...
gi 567727145  338 WIG 340
Cdd:TIGR01156 142 WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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