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Conserved domains on  [gi|667699502|ref|YP_009047124|]
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58 kDa Movement Protein [Blueberry mosaic associated virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
30K_MP_core super family cl39189
Core domain of 30K viral movement proteins; This entry represents the core domain found in ...
 105-246 3.66e-34

Core domain of 30K viral movement proteins; This entry represents the core domain found in viral movement proteins (MP) of the 30K type. The core domain is conserved among MPs of 30K sharing the same predicted secondary structure which consists of 1 alpha-helix and 7 predicted beta-strands. The only sequence feature common to all 30K MPs is a short region between beta-strands 1 and 2, which contains several conserved hydrophobic positions, and a nearly-invariant aspartate which constitutes the sequence signature of the superfamily. This signature aspartate has a conserved role in essential for viral cell-to-cell movement.


The actual alignment was detected with superfamily member pfam17644:

Pssm-ID: 375225  Cd Length: 138  Bit Score: 125.61  E-value: 3.66e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699502  105 IATMGRVVNLFKKATG-NEMPFVKFEKVQVMYIPLFQKTNEEDDpdkkipSMTVALVDKGQEEAGGDGIIQSITFRADEM 183
Cdd:pfam17644   1 LGTLKSITDKLRKLGGeSSQPFIQFYKVQCMYIPLFSRVDGDNG------EITVSLIDDGKEAAGQDPIIQSITFDASQM 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 667699502  184 ALMELSMNFFVTRKDIEKIVVDACVDEIPVEGRAYGAMTIAFFVHEDYVPLRTELKPSTLMYI 246
Cdd:pfam17644  75 AMVELSMNFFVEKKDMDFIGIHVSAENVPVQDRAYGSINLAFFTNEQSVPMMQEEKKSSYLMI 137
 
Name Accession Description Interval E-value
30K_MP_core pfam17644
Core domain of 30K viral movement proteins; This entry represents the core domain found in ...
 105-246 3.66e-34

Core domain of 30K viral movement proteins; This entry represents the core domain found in viral movement proteins (MP) of the 30K type. The core domain is conserved among MPs of 30K sharing the same predicted secondary structure which consists of 1 alpha-helix and 7 predicted beta-strands. The only sequence feature common to all 30K MPs is a short region between beta-strands 1 and 2, which contains several conserved hydrophobic positions, and a nearly-invariant aspartate which constitutes the sequence signature of the superfamily. This signature aspartate has a conserved role in essential for viral cell-to-cell movement.


Pssm-ID: 375225  Cd Length: 138  Bit Score: 125.61  E-value: 3.66e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699502  105 IATMGRVVNLFKKATG-NEMPFVKFEKVQVMYIPLFQKTNEEDDpdkkipSMTVALVDKGQEEAGGDGIIQSITFRADEM 183
Cdd:pfam17644   1 LGTLKSITDKLRKLGGeSSQPFIQFYKVQCMYIPLFSRVDGDNG------EITVSLIDDGKEAAGQDPIIQSITFDASQM 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 667699502  184 ALMELSMNFFVTRKDIEKIVVDACVDEIPVEGRAYGAMTIAFFVHEDYVPLRTELKPSTLMYI 246
Cdd:pfam17644  75 AMVELSMNFFVEKKDMDFIGIHVSAENVPVQDRAYGSINLAFFTNEQSVPMMQEEKKSSYLMI 137
 
Name Accession Description Interval E-value
30K_MP_core pfam17644
Core domain of 30K viral movement proteins; This entry represents the core domain found in ...
 105-246 3.66e-34

Core domain of 30K viral movement proteins; This entry represents the core domain found in viral movement proteins (MP) of the 30K type. The core domain is conserved among MPs of 30K sharing the same predicted secondary structure which consists of 1 alpha-helix and 7 predicted beta-strands. The only sequence feature common to all 30K MPs is a short region between beta-strands 1 and 2, which contains several conserved hydrophobic positions, and a nearly-invariant aspartate which constitutes the sequence signature of the superfamily. This signature aspartate has a conserved role in essential for viral cell-to-cell movement.


Pssm-ID: 375225  Cd Length: 138  Bit Score: 125.61  E-value: 3.66e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699502  105 IATMGRVVNLFKKATG-NEMPFVKFEKVQVMYIPLFQKTNEEDDpdkkipSMTVALVDKGQEEAGGDGIIQSITFRADEM 183
Cdd:pfam17644   1 LGTLKSITDKLRKLGGeSSQPFIQFYKVQCMYIPLFSRVDGDNG------EITVSLIDDGKEAAGQDPIIQSITFDASQM 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 667699502  184 ALMELSMNFFVTRKDIEKIVVDACVDEIPVEGRAYGAMTIAFFVHEDYVPLRTELKPSTLMYI 246
Cdd:pfam17644  75 AMVELSMNFFVEKKDMDFIGIHVSAENVPVQDRAYGSINLAFFTNEQSVPMMQEEKKSSYLMI 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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