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Conserved domains on  [gi|1381394824|ref|YP_009480334|]
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cytochrome b (mitochondrion) [Bradypus tridactylus]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 713.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   1 MTNIRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  81 HLHANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 161 VEWIWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTL 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 241 TLTLLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPI 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1381394824 321 SQCLFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILMPTAGLIENNLMKW 379
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 713.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   1 MTNIRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  81 HLHANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 161 VEWIWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTL 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 241 TLTLLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPI 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1381394824 321 SQCLFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILMPTAGLIENNLMKW 379
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-373 1.07e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 374.90  E-value: 1.07e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  11 LKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGASMF 90
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  91 FMCLYLHIGRNLYYGSYSY---LeTWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGG 167
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 168 FSIEKATLTRFFTLH-FITPFITLALVLTHLLFLHETGSNNPLGI----SSNSDKIPFHPYHTTKDILGllIMILTTLTL 242
Cdd:COG1290   179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFG--FFVFLGVFA 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 243 TLLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAP--SKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPI 320
Cdd:COG1290   257 LLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1381394824 321 SQCLFWILVADLLTLTWIGGQPmdPPFTTIGQLASTLYFSTILILMPTAGLIE 373
Cdd:COG1290   337 RTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 1.07e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 286.19  E-value: 1.07e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   9 PLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  89 MFFMCLYLHIGRNLYYGSYS--YLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1381394824 167 GFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSN 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 2.43e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 264.63  E-value: 2.43e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  18 LIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGASMFFMCLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  98 IGRNLYYGSYSYL--ETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSIEKATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1381394824 176 TRFFTLHFITPFITLALVLTHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 713.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   1 MTNIRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  81 HLHANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 161 VEWIWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTL 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 241 TLTLLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPI 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1381394824 321 SQCLFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILMPTAGLIENNLMKW 379
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 658.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   1 MTNIRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00119    2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  81 HLHANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDL 160
Cdd:MTH00119   82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 161 VEWIWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTL 240
Cdd:MTH00119  162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 241 TLTLLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPI 320
Cdd:MTH00119  242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1381394824 321 SQCLFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILMPTAGLIENNLMKW 379
Cdd:MTH00119  322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 643.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   1 MTNIRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00131    1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  81 HLHANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDL 160
Cdd:MTH00131   81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 161 VEWIWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTL 240
Cdd:MTH00131  161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 241 TLTLLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPI 320
Cdd:MTH00131  241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1381394824 321 SQCLFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILMPTAGLIENNLMKW 379
Cdd:MTH00131  321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 621.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   1 MTNIRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00074    2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  81 HLHANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDL 160
Cdd:MTH00074   82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 161 VEWIWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTL 240
Cdd:MTH00074  162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 241 TLTLLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPI 320
Cdd:MTH00074  242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1381394824 321 SQCLFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILMPTAGLIENNLMKW 379
Cdd:MTH00074  322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 4-367 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 598.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   4 IRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLH 83
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  84 ANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEW 163
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 164 IWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTLTLT 243
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 244 LLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPISQC 323
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1381394824 324 LFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILMP 367
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364
CYTB MTH00156
cytochrome b; Provisional
 11-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 585.98  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  11 LKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGASMF 90
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  91 FMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSI 170
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 171 EKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTLTLTLLHPDLL 250
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 251 GDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPISQCLFWILVA 330
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1381394824 331 DLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILM 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 566.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   1 MTNIRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00145    2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  81 HLHANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDL 160
Cdd:MTH00145   82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 161 VEWIWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTL 240
Cdd:MTH00145  162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 241 TLTLLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPI 320
Cdd:MTH00145  242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1381394824 321 SQCLFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILIL 365
Cdd:MTH00145  322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL 366
CYTB MTH00034
cytochrome b; Validated
 4-376 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 560.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   4 IRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLH 83
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  84 ANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEW 163
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 164 IWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTLTLT 243
Cdd:MTH00034  164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 244 LLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPISQC 323
Cdd:MTH00034  244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1381394824 324 LFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILMPTAGLIENNL 376
Cdd:MTH00034  324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKL 376
CYTB MTH00016
cytochrome b; Validated
 4-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 540.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   4 IRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLH 83
Cdd:MTH00016    5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  84 ANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEW 163
Cdd:MTH00016   85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 164 IWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTLTLT 243
Cdd:MTH00016  165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 244 LLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPISQC 323
Cdd:MTH00016  245 LLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQI 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1381394824 324 LFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFStILILMPTAGLIENNLMK 378
Cdd:MTH00016  325 LFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 4-378 3.93e-180

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 505.01  E-value: 3.93e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   4 IRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLH 83
Cdd:MTH00022    3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  84 ANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEW 163
Cdd:MTH00022   83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 164 IWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTLTLT 243
Cdd:MTH00022  163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 244 LLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPISQC 323
Cdd:MTH00022  243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1381394824 324 LFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILMPTAGLIENNLMK 378
Cdd:MTH00022  323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 4-378 5.84e-180

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 504.63  E-value: 5.84e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   4 IRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLH 83
Cdd:MTH00053    5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  84 ANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEW 163
Cdd:MTH00053   85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 164 IWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTLTLT 243
Cdd:MTH00053  165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 244 LLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPISQC 323
Cdd:MTH00053  245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1381394824 324 LFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFSTILILMPTAGLIENNLMK 378
Cdd:MTH00053  325 LFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 4-378 6.41e-170

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 479.03  E-value: 6.41e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   4 IRKTHPLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLH 83
Cdd:MTH00224    5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  84 ANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEW 163
Cdd:MTH00224   85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 164 IWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTLTLT 243
Cdd:MTH00224  165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 244 LLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPISQC 323
Cdd:MTH00224  245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1381394824 324 LFWILVADLLTLTWIGGQPMDPPFTTIGQLASTLYFsTILILMPTAGLIENNLMK 378
Cdd:MTH00224  325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF-SYFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 4-374 3.88e-135

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 391.22  E-value: 3.88e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   4 IRKTHpLLKSINhALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLH 83
Cdd:MTH00033    3 LRKTG-LLEPVN-DIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  84 ANGASMFFMCLYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEW 163
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 164 IWGGFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGLLIMILTTLTLT 243
Cdd:MTH00033  161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 244 L--LHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPIS 321
Cdd:MTH00033  241 IepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1381394824 322 QCLFWILVADLLTLTWIGGQPMDP-PFTTIGQLASTLYFSTILILMPTAGLIEN 374
Cdd:MTH00033  321 KFFFWFIVGDFIILTWIGSAPAGAdPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-373 1.07e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 374.90  E-value: 1.07e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  11 LKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGASMF 90
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  91 FMCLYLHIGRNLYYGSYSY---LeTWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGG 167
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 168 FSIEKATLTRFFTLH-FITPFITLALVLTHLLFLHETGSNNPLGI----SSNSDKIPFHPYHTTKDILGllIMILTTLTL 242
Cdd:COG1290   179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFG--FFVFLGVFA 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 243 TLLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAP--SKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPI 320
Cdd:COG1290   257 LLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1381394824 321 SQCLFWILVADLLTLTWIGGQPmdPPFTTIGQLASTLYFSTILILMPTAGLIE 373
Cdd:COG1290   337 RTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 14-366 5.50e-116

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 341.15  E-value: 5.50e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  14 INHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGASMFFMC 93
Cdd:MTH00086    3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  94 LYLHIGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSIEKA 173
Cdd:MTH00086   83 LYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 174 TLTRFFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILGlLIMILTTLTLTLLHPDLLGDP 253
Cdd:MTH00086  163 TLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDP 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 254 NNYTPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMThtaKQRSLAFRPISQCLFWILVADLL 333
Cdd:MTH00086  242 EMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNV 318

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1381394824 334 TLTWIGGQPMDPPFTTIGQLASTLYFSTILILM 366
Cdd:MTH00086  319 ILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 1.07e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 286.19  E-value: 1.07e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824   9 PLLKSINHALIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  89 MFFMCLYLHIGRNLYYGSYS--YLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1381394824 167 GFSIEKATLTRFFTLHFITPFITLALVLTHLLFLHETGSN 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 2.43e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 264.63  E-value: 2.43e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  18 LIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGASMFFMCLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  98 IGRNLYYGSYSYL--ETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSIEKATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1381394824 176 TRFFTLHFITPFITLALVLTHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 18-357 3.45e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 267.62  E-value: 3.45e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  18 LIDLPTPSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGASMFFMCLYLH 97
Cdd:MTH00046    9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  98 IGRNLYYGSYSYLETWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSIEKATLTR 177
Cdd:MTH00046   89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 178 FFTLHFITPFITLALVLTHLLFLHETGSNNPLGISSN-SDKIPFHPYHTTKDILGLLIMILTTLTLTLLHPDLLGDPNNY 256
Cdd:MTH00046  169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 257 TPANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGvLALICSILVLMIIPmthtAKQRSLAFRPISQCLFWILVADLLTLT 336
Cdd:MTH00046  249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLS 323

                         330       340
                  ....*....|....*....|.
gi 1381394824 337 WIGGQPMDPPFTTIGQLASTL 357
Cdd:MTH00046  324 YLGGCHPEYPYLLISQLFSVL 344
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 9.97e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 156.27  E-value: 9.97e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 207 NPLGISSNSDKIPFHPYHTTKDILGLLIMILTTLTLTLLHPDLLGDPNNYTPANPLNTPPHIKPEWYFLFAYTILRSAPS 286
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1381394824 287 KLGGVLALICSILVLMIIPMTHTAKQRSlAFRPISQCLFWILVADLLTLTWIGGQPMDPPFTTIGQLA 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 2.91e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 145.70  E-value: 2.91e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 258 PANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAFRPISQCLFWILVADLLTLTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1381394824 338 IGGQPMDPPFTTIGQLASTLY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 33-209 1.08e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 143.31  E-value: 1.08e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  33 LGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGASMFFMCLYLHIGRNLYYGSYSYLE- 111
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 112 -TWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSIEKATLTRFFTLH-FITPFIT 189
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1381394824 190 LALVLTHLLFLHETGSNNPL 209
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-231 1.37e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 138.53  E-value: 1.37e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  88 SMFFMCLYLHIGRNLYYGSYSYLE--TWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1381394824 166 GGFSIEKATLTRFFTLHF-ITPFITLALVLTHLLFLHETGSNNPLGISSNSDKIPFHPYHTTKDILG 231
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLF 147
petB CHL00070
cytochrome b6
 24-209 8.45e-39

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 137.93  E-value: 8.45e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824  24 PSNISTWWNLGSLLGTCLIMQILTGLFLAMHYSPDTTTAFSSITHICRDVNYGWIIRHLHANGASMFFMCLYLHIGRNLY 103
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394824 104 YGSYSYLE--TWNTGMMLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSIEKATLTRFFTL 181
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1381394824 182 H-FITPFITLALVLTHLLFLHETGSNNPL 209
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 258-327 4.25e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 52.31  E-value: 4.25e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1381394824 258 PANPLNTPPHIKPEWYFLFAYTILRSAPSKLGGVLALICSILVLMIIPMTHTAKQRSLAF-RPISQCLFWI 327
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVFLI 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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