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Conserved domains on  [gi|1904804953|ref|YP_009917969|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Colobocentrotus mertensii]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009536)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 5.34e-54

NADH dehydrogenase subunit 3; Validated


:

Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 164.38  E-value: 5.34e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   1 MTTMIFLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAG 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1904804953  81 LSTHPSTLIPIALLFMVILTLGLIFEWVNGGLEWAE 116
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 5.34e-54

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 164.38  E-value: 5.34e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   1 MTTMIFLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAG 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1904804953  81 LSTHPSTLIPIALLFMVILTLGLIFEWVNGGLEWAE 116
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
23-113 8.90e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 94.80  E-value: 8.90e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  23 HVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTHPSTLIPIaLLFMVILTLG 102
Cdd:pfam00507   5 RLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEM-LIFIAILLVG 83

                          90
                  ....*....|.
gi 1904804953 103 LIFEWVNGGLE 113
Cdd:pfam00507  84 LVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 5-114 4.16e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.94  E-value: 4.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   5 IFLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTH 84
Cdd:COG0838     9 LIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELG 88

                          90       100       110
                  ....*....|....*....|....*....|
gi 1904804953  85 PSTLIPIaLLFMVILTLGLIFEWVNGGLEW 114
Cdd:COG0838    89 WFGLIEM-LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 5.34e-54

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 164.38  E-value: 5.34e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   1 MTTMIFLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAG 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1904804953  81 LSTHPSTLIPIALLFMVILTLGLIFEWVNGGLEWAE 116
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 25-116 1.19e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 128.11  E-value: 1.19e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  25 LPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTHPSTLIPIALLFMVILTLGLI 104
Cdd:MTH00136   25 LPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLI 104

                          90
                  ....*....|..
gi 1904804953 105 FEWVNGGLEWAE 116
Cdd:MTH00136  105 YEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 25-116 1.74e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 125.11  E-value: 1.74e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  25 LPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTHPSTLIPIALLFMVILTLGLI 104
Cdd:MTH00069   23 LPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLTLGLI 102

                          90
                  ....*....|..
gi 1904804953 105 FEWVNGGLEWAE 116
Cdd:MTH00069  103 YEWIQGGLEWAE 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 25-116 9.93e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 123.13  E-value: 9.93e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  25 LPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTHPSTLIPIALLFMVILTLGLI 104
Cdd:MTH00106   24 LPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLA 103

                          90
                  ....*....|..
gi 1904804953 105 FEWVNGGLEWAE 116
Cdd:MTH00106  104 YEWTQKGLEWTE 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 3-115 1.00e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 118.06  E-value: 1.00e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   3 TMIFLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLS 82
Cdd:MTH00113    2 NLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINL 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1904804953  83 THPSTLIPIALLFMVILTLGLIFEWVNGGLEWA 115
Cdd:MTH00113   82 TTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 1.02e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 105.36  E-value: 1.02e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   1 MTTMIFLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAG 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1904804953  81 LSTHPSTLipIALLFMVILTLGLIFEWVNGGLEW 114
Cdd:MTH00203   81 QLSSLSLL--LAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 1.41e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 99.93  E-value: 1.41e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   1 MTTMIFLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAG 80
Cdd:MTH00148    2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1904804953  81 LSTHPSTLIPIALLFMVILTLGLIFEWVNGGLEWAE 116
Cdd:MTH00148   82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 31-114 7.71e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 95.61  E-value: 7.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  31 DGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTHPSTLIPIALLFMVILTLGLIFEWVNG 110
Cdd:MTH00161   30 DREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQG 109


                  ....
gi 1904804953 111 GLEW 114
Cdd:MTH00161  110 ALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
23-113 8.90e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 94.80  E-value: 8.90e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  23 HVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTHPSTLIPIaLLFMVILTLG 102
Cdd:pfam00507   5 RLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEM-LIFIAILLVG 83

                          90
                  ....*....|.
gi 1904804953 103 LIFEWVNGGLE 113
Cdd:pfam00507  84 LVYAWKKGALE 94
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 5.34e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 93.77  E-value: 5.34e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   1 MTTMIFLFLITATVAAVLALAAHVLPSRSS-DGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAA 79
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTaDREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1904804953  80 GLSTHPSTLIPIALLFMVILTLGLIFEWVNGGLEWA 115
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 6-114 2.01e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 89.77  E-value: 2.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   6 FLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLpaaGLSTHP 85
Cdd:MTH00055   10 ILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPW---CVVYNQ 86

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1904804953  86 STLIP--IALLFMVILTLGLIFEWVNGGLEW 114
Cdd:MTH00055   87 IGLFGfwVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 2.37e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 89.28  E-value: 2.37e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   1 MTTMIFLFLITATVAAVLALAAHVLPSRS-SDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAA 79
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSlMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1904804953  80 GLSTHPSTLIPIALLFMVILTLGLIFEWVNGGLEWAE 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 5-114 4.16e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.94  E-value: 4.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   5 IFLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTH 84
Cdd:COG0838     9 LIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELG 88

                          90       100       110
                  ....*....|....*....|....*....|
gi 1904804953  85 PSTLIPIaLLFMVILTLGLIFEWVNGGLEW 114
Cdd:COG0838    89 WFGLIEM-LVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 4-114 1.87e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 84.34  E-value: 1.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   4 MIFLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLST 83
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1904804953  84 HPSTLIpIALLFMVILTLGLIFEWVNGGLEW 114
Cdd:MTH00018   83 APFGFW-TMVGFLFILTLGLIYEWIKGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 24-115 3.17e-22

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 84.15  E-value: 3.17e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  24 VLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLpaaGLSTHPSTLIPI--ALLFMVILTL 101
Cdd:PRK06602   31 LLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPW---AVSFREIGWLGFveAMIFILVLLV 107

                          90
                  ....*....|....
gi 1904804953 102 GLIFEWVNGGLEWA 115
Cdd:PRK06602  108 GLVYLWRKGALDWE 121
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-114 4.01e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 71.12  E-value: 4.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  31 DGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTHPSTLIpIALLFMVILTLGLIFEWVNG 110
Cdd:MTH00030   40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFW-IVYTFLIVLAIGLAYEWIKG 118


                  ....
gi 1904804953 111 GLEW 114
Cdd:MTH00030  119 GLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 24-114 7.70e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 52.30  E-value: 7.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  24 VLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTHPSTLIPiALLFMVILTLGL 103
Cdd:CHL00022   30 LLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIE-ALIFVLILIVGL 108

                          90
                  ....*....|.
gi 1904804953 104 IFEWVNGGLEW 114
Cdd:CHL00022  109 VYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 34-114 9.69e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 51.98  E-value: 9.69e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  34 KTSPYECGFDPLNSARLP--FSFRFFLVAILFLLFDLEIALLFPLPAAGLSTHPSTLIPIALlFMVILTLGLIFEWVNGG 111
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMAL-FMLTVFVAYAYVWRRGG 115


                  ...
gi 1904804953 112 LEW 114
Cdd:PRK07928  116 LEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
1-114 7.30e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 49.74  E-value: 7.30e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   1 MTTMIFLFLITATVAAVLALAAHVLPSRSSDGEKTSpYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAG 80
Cdd:PRK07756   10 MIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATT-YESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY 88

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1904804953  81 LSTHPSTLIPIaLLFMVILTLGLIFEWVNGGLEW 114
Cdd:PRK07756   89 DKLGLFALIEM-LIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
25-114 3.57e-08

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 48.12  E-value: 3.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953  25 LPSRSSDGEKTSPYECGFDPLNSARlPFSFRFFLVAILFLLFDLEIALLFPLpAAGLSTHPSTLIPIALLFMVILTLGLI 104
Cdd:PRK08489   38 LAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPW-AVDFKLLGLFGLIEMLLFIVLLTIGFI 115

                          90
                  ....*....|
gi 1904804953 105 FEWVNGGLEW 114
Cdd:PRK08489  116 YAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 2.78e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.57  E-value: 2.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804953   1 MTTMIFLFLITATVAAVLALAAHVLPSRSSDGEKTSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLpaag 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL---- 76

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1904804953  81 LSTHPSTLIPIALLFMVILtLGLIFEWVNGGLEW 114
Cdd:MTH00092   77 LVSDFSSLISFFMLMIFIF-FGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-114 4.14e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.50  E-value: 4.14e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1904804953  36 SPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAAGLSTHPstlIPIALLFMVILTLGLIFEWVNGGLEW 114
Cdd:MTH00060   39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLLFYN---FWYYYFFLLLLFLGFVVELFSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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