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Conserved domains on  [gi|2252659304|ref|YP_010410019|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Alouatta palliata]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.69e-58

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 175.90  E-value: 1.69e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304   1 MNLTLTLATNVLLALLLITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2252659304  81 TNNLMLTINTILTLIIILALGLAYEWTQKGLDWVE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.69e-58

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 175.90  E-value: 1.69e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304   1 MNLTLTLATNVLLALLLITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2252659304  81 TNNLMLTINTILTLIIILALGLAYEWTQKGLDWVE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 4.72e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.18  E-value: 4.72e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  18 ITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNL-MLTINTILTLII 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELgWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2252659304  97 ILALGLAYEWTQKGLD 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 18-113 9.55e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 72.46  E-value: 9.55e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  18 ITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNL-MLTINTILTLII 96
Cdd:COG0838    23 LLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELgWFGLIEMLVFIA 100

                          90
                  ....*....|....*..
gi 2252659304  97 ILALGLAYEWTQKGLDW 113
Cdd:COG0838   101 ILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.69e-58

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 175.90  E-value: 1.69e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304   1 MNLTLTLATNVLLALLLITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2252659304  81 TNNLMLTINTILTLIIILALGLAYEWTQKGLDWVE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 1.22e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 130.42  E-value: 1.22e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304   1 MNLTLT-LATNVLLALLLITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWAT 79
Cdd:MTH00136    1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2252659304  80 QTNNLMLTINTILTLIIILALGLAYEWTQKGLDWVE 115
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 1.28e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 127.80  E-value: 1.28e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304   3 LTLTLATNVLLALLLITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTN 82
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2252659304  83 NLMLTINTILTLIIILALGLAYEWTQKGLDWVE 115
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 3.10e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 119.22  E-value: 3.10e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304   1 MNLTLTLATNVLLALLLITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQ 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2252659304  81 TNNLMLTINTILTLIIILALGLAYEWTQKGLDW 113
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 9.84e-31

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 105.45  E-value: 9.84e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304   1 MNLTLTLATNVLLALLLITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQ 80
Cdd:MTH00042    2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2252659304  81 TNNLMLTINTILTLIIILALGLAYEWTQKGLDWVE 115
Cdd:MTH00042   82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 18-113 1.76e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 99.59  E-value: 1.76e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  18 ITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNlmLTINTILTLIII 97
Cdd:MTH00203   19 LFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSS--LSLLLAFLFLIL 96

                          90
                  ....*....|....*.
gi 2252659304  98 LALGLAYEWTQKGLDW 113
Cdd:MTH00203   97 LTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 4.72e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.18  E-value: 4.72e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  18 ITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNL-MLTINTILTLII 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELgWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2252659304  97 ILALGLAYEWTQKGLD 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 32-113 1.56e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 87.14  E-value: 1.56e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  32 EKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLMLTINTILTLIIILALGLAYEWTQKGL 111
Cdd:MTH00161   32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQGAL 111


                  ..
gi 2252659304 112 DW 113
Cdd:MTH00161  112 EW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 32-115 4.88e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 83.50  E-value: 4.88e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  32 EKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLMLTINTILTLIIILALGLAYEWTQKGL 111
Cdd:MTH00202   34 EKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSL 113


                  ....
gi 2252659304 112 DWVE 115
Cdd:MTH00202  114 DWVK 117
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 32-115 2.45e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 81.44  E-value: 2.45e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  32 EKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLMLTINTILTLIIILALGLAYEWTQKGL 111
Cdd:MTH00148   34 EKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSLFIFLLILILGLFHEWNEGSL 113


                  ....
gi 2252659304 112 DWVE 115
Cdd:MTH00148  114 DWVS 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-113 1.37e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 77.21  E-value: 1.37e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  32 EKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLMLTINTILTLIIILALGLAYEWTQKGL 111
Cdd:MTH00012   34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                  ..
gi 2252659304 112 DW 113
Cdd:MTH00012  114 DW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 18-113 9.55e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 72.46  E-value: 9.55e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  18 ITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNL-MLTINTILTLII 96
Cdd:COG0838    23 LLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELgWFGLIEMLVFIA 100

                          90
                  ....*....|....*..
gi 2252659304  97 ILALGLAYEWTQKGLDW 113
Cdd:COG0838   101 ILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-113 1.00e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 69.74  E-value: 1.00e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  31 TEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNL-MLTINTILTLIIILALGLAYEWTQK 109
Cdd:MTH00055   36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIgLFGFWVMYLFLIILTIGLIYEWVKG 113


                  ....
gi 2252659304 110 GLDW 113
Cdd:MTH00055  114 GLEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 32-113 3.07e-15

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 66.04  E-value: 3.07e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  32 EKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNL-MLTINTILTLIIILALGLAYEWTQKG 110
Cdd:PRK06602   40 EKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIgWLGFVEAMIFILVLLVGLVYLWRKGA 117


                  ...
gi 2252659304 111 LDW 113
Cdd:PRK06602  118 LDW 120
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-113 1.23e-14

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 64.31  E-value: 1.23e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  32 EKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNLMLT-INTILTLIIILALGLAYEWTQKG 110
Cdd:MTH00018   32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIAPFgFWTMVGFLFILTLGLIYEWIKGG 109


                  ...
gi 2252659304 111 LDW 113
Cdd:MTH00018  110 LEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-113 1.38e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 59.56  E-value: 1.38e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  31 TEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNL-MLTINTILTLIIILALGLAYEWTQK 109
Cdd:MTH00030   41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLnLFSFWIVYTFLIVLAIGLAYEWIKG 118


                  ....
gi 2252659304 110 GLDW 113
Cdd:MTH00030  119 GLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-113 3.31e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 50.44  E-value: 3.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  33 KFNPYECGFDPTTSAHLP--FSMKFFLVAITFLLFDLEIALLLPlpWATQTNNL-MLTINTILTLIIILALGLAYEWTQK 109
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALgVFGLVEMALFMLTVFVAYAYVWRRG 114


                  ....
gi 2252659304 110 GLDW 113
Cdd:PRK07928  115 GLEW 118
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 28-73 2.06e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.26  E-value: 2.06e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2252659304  28 NTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLL 73
Cdd:MTH00092   29 KFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
18-113 3.16e-05

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 40.11  E-value: 3.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  18 ITITFWLPQLNTYTEKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPlpWATQTNNL-MLTINTILTLII 96
Cdd:PRK07756   27 LTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLgLFALIEMLIFVV 104

                          90
                  ....*....|....*..
gi 2252659304  97 ILALGLAYEWTQKGLDW 113
Cdd:PRK07756  105 MLLVGLAYAWKKKVLQW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 32-113 3.71e-05

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 39.97  E-value: 3.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659304  32 EKFNPYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNL-MLTINTILTLIIILALGLAYEWTQKG 110
Cdd:CHL00022   39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLgVSAFIEALIFVLILIVGLVYAWRKGA 116


                  ...
gi 2252659304 111 LDW 113
Cdd:CHL00022  117 LEW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
24-78 1.10e-04

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 38.88  E-value: 1.10e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2252659304  24 LPQLNTYTEKFNPYECGFDPTTSAHlPFSMKFFLVAITFLLFDLEIALLlpLPWA 78
Cdd:PRK08489   38 LAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWA 89
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-76 7.09e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.41  E-value: 7.09e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2252659304  36 PYECGFDPTTSAHLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060   40 SFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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