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Conserved domains on  [gi|2386959598|ref|YP_010568233|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Tupaia glis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.87e-65

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 192.85  E-value: 2.87e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   1 MNLILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2386959598  81 SNYPTTMLTMALLLISILALGLAYEWLQKGLEWAE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.87e-65

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 192.85  E-value: 2.87e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   1 MNLILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2386959598  81 SNYPTTMLTMALLLISILALGLAYEWLQKGLEWAE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 3.29e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 88.25  E-value: 3.29e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598  18 VTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQ-SNYPTTMLTMALLLIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSfRELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2386959598  97 ILALGLAYEWLQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-113 7.21e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 72.85  E-value: 7.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   3 LILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQ-S 81
Cdd:COG0838     8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVfR 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2386959598  82 NYPTTMLTMALLLISILALGLAYEWLQKGLEW 113
Cdd:COG0838    86 ELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.87e-65

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 192.85  E-value: 2.87e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   1 MNLILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2386959598  81 SNYPTTMLTMALLLISILALGLAYEWLQKGLEWAE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 1.51e-48

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 150.45  E-value: 1.51e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   1 MNLILT-LIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00136    1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2386959598  80 QSNYPTTMLTMALLLISILALGLAYEWLQKGLEWAE 115
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 1.58e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 142.83  E-value: 1.58e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   3 LILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQSN 82
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2386959598  83 YPTTMLTMALLLISILALGLAYEWLQKGLEWAE 115
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 1.38e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 135.39  E-value: 1.38e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   1 MNLILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2386959598  81 SNYPTTMLTMALLLISILALGLAYEWLQKGLEWA 114
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 1.87e-36

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 120.09  E-value: 1.87e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   1 MNLILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00042    2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2386959598  81 SNYPTTMLTMALLLISILALGLAYEWLQKGLEWAE 115
Cdd:MTH00042   82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-113 6.05e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 108.45  E-value: 6.05e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   1 MNLILTLIVNTSL-AALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00203    1 MNLIMLFFLIALLlSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2386959598  80 QSNYPTTMLTMALLLISILALGlaYEWLQKGLEW 113
Cdd:MTH00203   81 QLSSLSLLLAFLFLILLTLGLI--YEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 9.93e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 90.30  E-value: 9.93e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   1 MNLILTLIVNTSLAALLVTIAFWLPQLNIYM-EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00148    2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDrEKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2386959598  80 QSNYPTTMLTMALLLISILALGLAYEWLQKGLEWAE 115
Cdd:MTH00148   82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 3.29e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 88.25  E-value: 3.29e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598  18 VTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQ-SNYPTTMLTMALLLIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSfRELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2386959598  97 ILALGLAYEWLQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-115 3.19e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 83.89  E-value: 3.19e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   1 MNLILTLIVNTSLAALLVTIAFWLPQLNIYM--EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMdrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2386959598  79 IQSNYPTTMLTMALLLISILALGLAYEWLQKGLEWAE 115
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 32-113 8.87e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 82.52  E-value: 8.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQSNYPTTMLTMALLLISILALGLAYEWLQKGL 111
Cdd:MTH00161   32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQGAL 111


                  ..
gi 2386959598 112 EW 113
Cdd:MTH00161  112 EW 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-114 2.85e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 73.74  E-value: 2.85e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQSNYPTTMLTMALLLISILALGLAYEWLQKGL 111
Cdd:MTH00012   34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                  ...
gi 2386959598 112 EWA 114
Cdd:MTH00012  114 DWS 116
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-113 7.21e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 72.85  E-value: 7.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   3 LILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQ-S 81
Cdd:COG0838     8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVfR 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2386959598  82 NYPTTMLTMALLLISILALGLAYEWLQKGLEW 113
Cdd:COG0838    86 ELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 8.11e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 72.40  E-value: 8.11e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   1 MNLILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQ 80
Cdd:MTH00018    1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2386959598  81 SNY--PTTMLTMALLLISILALGLaYEWLQKGLEW 113
Cdd:MTH00018   79 YNQiaPFGFWTMVGFLFILTLGLI-YEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-113 5.42e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 70.51  E-value: 5.42e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQSNYPTTMLT-MALLLISILALGLAYEWLQKG 110
Cdd:MTH00055   37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIGLFGFwVMYLFLIILTIGLIYEWVKGG 114


                  ...
gi 2386959598 111 LEW 113
Cdd:MTH00055  115 LEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-79 5.88e-16

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 67.97  E-value: 5.88e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2386959598   7 LIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAI 79
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAV 85
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 16-113 4.12e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 63.41  E-value: 4.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598  16 LLVTIAFWLPQLNIYM-----EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQSNYPTTM-LT 89
Cdd:MTH00030   21 LLVSISFTLGNSRIGLtkpdsEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLFsFW 98

                          90       100
                  ....*....|....*....|....
gi 2386959598  90 MALLLISILALGLAYEWLQKGLEW 113
Cdd:MTH00030   99 IVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-113 3.01e-08

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 48.13  E-value: 3.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598  33 KYSPYECGFDPMGSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWAIQSNY-PTTMLTMALLLISILALGLAYEWLQK 109
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDAlGVFGLVEMALFMLTVFVAYAYVWRRG 114


                  ....
gi 2386959598 110 GLEW 113
Cdd:PRK07928  115 GLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 7-79 1.04e-06

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 43.82  E-value: 1.04e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2386959598   7 LIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAI 79
Cdd:CHL00022   14 LIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAM 84
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-73 4.00e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.19  E-value: 4.00e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2386959598   1 MNLILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLL 73
Cdd:MTH00092    2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-76 4.17e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.50  E-value: 4.17e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2386959598  34 YSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060   38 VSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
7-113 1.80e-04

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 38.19  E-value: 1.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2386959598   7 LIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPlpWAIQ-SNYPT 85
Cdd:PRK07756   16 LLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAyDKLGL 93

                          90       100
                  ....*....|....*....|....*...
gi 2386959598  86 TMLTMALLLISILALGLAYEWLQKGLEW 113
Cdd:PRK07756   94 FALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
3-79 6.13e-04

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 36.57  E-value: 6.13e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2386959598   3 LILTLIVNTSLAALLVTIAFWLPQLNIYMEKYSPYECGFDPMGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWAI 79
Cdd:PRK08489   17 LVLTFVAFFLTTRLARFISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAV 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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