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Conserved domains on  [gi|1033370542|ref|XP_016851550|]
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PREDICTED: myosin-11 isoform X2 [Anolis carolinensis]

Protein Classification

myosin-10( domain architecture ID 12036895)

myosin-10 (myosin heavy chain 10 or MYH10) is a class II (conventional) non-muscle myosin, which contains two heavy chains made up of the motor/head (N-terminal) and coiled-coil tail (C-terminal) domains; the head ATPase activity and functions as a molecular motor, utilizing ATP hydrolysis to generate directed movement toward the plus end along actin filaments

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
874-1954 0e+00

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


:

Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 1500.82  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  874 TRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHEL 953
Cdd:pfam01576    1 TRQEEEMQAKEEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQELEEILHEL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  954 ESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEER 1033
Cdd:pfam01576   81 EARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQKERKLLEER 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1034 LSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALAR 1113
Cdd:pfam01576  161 ISEFTSNLAEEEEKSKSLNKLKNKHEAMISDLEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1114 KEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQE 1193
Cdd:pfam01576  241 KEEELQAALARLEEETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1194 LRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAK 1273
Cdd:pfam01576  321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1274 LESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEE 1353
Cdd:pfam01576  401 QDSEHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1354 TRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVR 1433
Cdd:pfam01576  481 TRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQR 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1434 YEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLS 1513
Cdd:pfam01576  561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETKALS 640
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1514 LSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEV 1593
Cdd:pfam01576  641 LARALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEV 720
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1594 NMQALKAQHERELQNRDDANDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQL 1673
Cdd:pfam01576  721 NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIEAANKGRDEAVKQL 800
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1674 RKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSAL 1753
Cdd:pfam01576  801 KKLQAQMKDLQRELDEARASRDEIFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSAL 880
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1754 LDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSS 1833
Cdd:pfam01576  881 LDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGT 960
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1834 VKSKYKMAIATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLE 1913
Cdd:pfam01576  961 VKSKYKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRLKQLKRQLE 1040
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|.
gi 1033370542 1914 EAEEEASRANASRRRMQRELEDVTESAESMNREVTSLRNRL 1954
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESAEAMNREVTTLRSKL 1081
MYSc_Myh10 cd14920
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ...
93-797 0e+00

class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


:

Pssm-ID: 276952 [Multi-domain]  Cd Length: 673  Bit Score: 1421.70  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14920      1 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDHNIppeypteakQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14920     81 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNI---------PGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd14920    152 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQET 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd14920    232 MEAMHIMGFSHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQ 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd14920    312 KAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNH 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRQL 572
Cdd:cd14920    392 TMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQL 471
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqgpveMDRIV 652
Cdd:cd14920    472 KDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKD-----------------------VDRIV 528
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  653 GLDQVSGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLE 732
Cdd:cd14920    529 GLDQVTGMTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLE 608
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  733 GIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14920    609 GIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 673
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
25-70 4.18e-10

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


:

Pssm-ID: 426949  Cd Length: 45  Bit Score: 56.67  E-value: 4.18e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1033370542   25 TAKRLVWVPSERHGFEAAGLREERGDEVMVELaENGRQVLVAKDDI 70
Cdd:pfam02736    1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVET-EDGKTVTVKKDDV 45
 
Name Accession Description Interval E-value
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
874-1954 0e+00

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 1500.82  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  874 TRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHEL 953
Cdd:pfam01576    1 TRQEEEMQAKEEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQELEEILHEL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  954 ESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEER 1033
Cdd:pfam01576   81 EARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQKERKLLEER 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1034 LSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALAR 1113
Cdd:pfam01576  161 ISEFTSNLAEEEEKSKSLNKLKNKHEAMISDLEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1114 KEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQE 1193
Cdd:pfam01576  241 KEEELQAALARLEEETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1194 LRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAK 1273
Cdd:pfam01576  321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1274 LESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEE 1353
Cdd:pfam01576  401 QDSEHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1354 TRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVR 1433
Cdd:pfam01576  481 TRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQR 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1434 YEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLS 1513
Cdd:pfam01576  561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETKALS 640
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1514 LSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEV 1593
Cdd:pfam01576  641 LARALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEV 720
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1594 NMQALKAQHERELQNRDDANDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQL 1673
Cdd:pfam01576  721 NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIEAANKGRDEAVKQL 800
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1674 RKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSAL 1753
Cdd:pfam01576  801 KKLQAQMKDLQRELDEARASRDEIFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSAL 880
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1754 LDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSS 1833
Cdd:pfam01576  881 LDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGT 960
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1834 VKSKYKMAIATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLE 1913
Cdd:pfam01576  961 VKSKYKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRLKQLKRQLE 1040
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|.
gi 1033370542 1914 EAEEEASRANASRRRMQRELEDVTESAESMNREVTSLRNRL 1954
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESAEAMNREVTTLRSKL 1081
MYSc_Myh10 cd14920
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ...
93-797 0e+00

class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276952 [Multi-domain]  Cd Length: 673  Bit Score: 1421.70  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14920      1 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDHNIppeypteakQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14920     81 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNI---------PGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd14920    152 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQET 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd14920    232 MEAMHIMGFSHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQ 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd14920    312 KAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNH 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRQL 572
Cdd:cd14920    392 TMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQL 471
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqgpveMDRIV 652
Cdd:cd14920    472 KDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKD-----------------------VDRIV 528
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  653 GLDQVSGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLE 732
Cdd:cd14920    529 GLDQVTGMTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLE 608
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  733 GIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14920    609 GIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 673
Myosin_head pfam00063
Myosin head (motor domain);
81-797 0e+00

Myosin head (motor domain);


Pssm-ID: 395017  Cd Length: 674  Bit Score: 1102.72  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   81 VEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSML 160
Cdd:pfam00063    1 VEDMVELSYLNEPSVLHNLKKRYKSDLIYTYSGLVLVAVNPYKQLPIYSEDMIKAYRGKRRGELPPHIFAIADEAYRSML 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  161 QDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKArkdhnippeypteAKQGELERQLLQANPILEAFGNAKTVKND 240
Cdd:pfam00063   81 QDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSA-------------GNVGRLEEQILQSNPILEAFGNAKTVRNN 147
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  241 NSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSN-GYLP 319
Cdd:pfam00063  148 NSSRFGKYIEIQFDAKGDIVGGKIETYLLEKSRVVYQAEGERNYHIFYQLLAGASAQLKKELRLTNPKDYHYLSQsGCYT 227
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  320 IPGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAI 399
Cdd:pfam00063  228 IDGIDDSEEFKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKERNDEQAVPDDTENLQKAASLLGIDSTELEKAL 307
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  400 LTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCI 479
Cdd:pfam00063  308 CKRRIKTGRETVSKPQNVEQANYARDALAKAIYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGFEIFEKNSFEQLCI 387
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  480 NYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLALLDEECWFPKATDKSFVEKVSQE 559
Cdd:pfam00063  388 NYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFG-DNQPCIDLIEKK--PLGILSLLDEECLFPKATDQTFLDKLYST 464
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  560 QGTHPKFQKPRQlRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEiqniqkvyffdsya 639
Cdd:pfam00063  465 FSKHPHFQKPRL-QGETHFIIKHYAGDVEYNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELFPDY-------------- 529
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  640 vapqgpvemdrivGLDQVSGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPH 719
Cdd:pfam00063  530 -------------ETAESAAANESGKSTPKRTKKKRFITVGSQFKESLGELMKTLNSTNPHYIRCIKPNEKKRAGVFDNS 596
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542  720 LVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:pfam00063  597 LVLHQLRCNGVLEGIRIRRAGFPNRITFQEFVQRYRILAPKTWPKWKGDAKKGCEAILQSLNLDKEEYQFGKTKIFFR 674
MYSc smart00242
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical ...
74-809 0e+00

Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.


Pssm-ID: 214580 [Multi-domain]  Cd Length: 677  Bit Score: 1015.16  E-value: 0e+00
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542    74 NPPKFTKVEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISE 153
Cdd:smart00242    1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   154 AAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKarkdhnippeypteaKQGELERQLLQANPILEAFGN 233
Cdd:smart00242   81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNT---------------EVGSVEDQILESNPILEAFGN 145
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   234 AKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFL 313
Cdd:smart00242  146 AKTLRNNNSSRFGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYL 225
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   314 SNG-YLPIPGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNT-AAQKLCHLLGMN 391
Cdd:smart00242  226 NQGgCLTVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKeELSNAAELLGVD 305
                           330       340       350       360       370       380       390       400
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   392 VTEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQL 471
Cdd:smart00242  306 PEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINQSLS-FKDGSTYFIGVLDIYGFEIFEV 384
                           410       420       430       440       450       460       470       480
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   472 NSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPKATDKS 551
Cdd:smart00242  385 NSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFF-DNQDCIDLIE--KKPPGILSLLDEECRFPKGTDQT 461
                           490       500       510       520       530       540       550       560
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   552 FVEKVSQEQGTHPKFQKPRQlRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEIQNiqk 631
Cdd:smart00242  462 FLEKLNQHHKKHPHFSKPKK-KGRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLIELLQSSKNPLIASLFPSGVSN--- 537
                           570       580       590       600       610       620       630       640
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   632 vyffdsyavapqgpvemdrivgldqvsgmgdlafgasyKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEK 711
Cdd:smart00242  538 --------------------------------------AGSKKRFQTVGSQFKEQLNELMDTLNSTNPHFIRCIKPNEEK 579
                           650       660       670       680       690       700       710       720
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   712 RAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQ 791
Cdd:smart00242  580 KPGDFDSSLVLHQLRYLGVLENIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKKACEALLQSLGLDEDEYQLGK 659
                           730
                    ....*....|....*...
gi 1033370542   792 SKIFFRAGVLAHLEEERD 809
Cdd:smart00242  660 TKVFLRPGQLAELEELRE 677
COG5022 COG5022
Myosin heavy chain [General function prediction only];
30-1182 0e+00

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 914.46  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   30 VWVPSERHGFEAAGLREERGDEVMVELA---ENGRQVLVAKDDIQ--KMNPPKFTKVEDMAELTCLNEASVLHNLKDRYY 104
Cdd:COG5022     12 CWIPDEEKGWIWAEIIKEAFNKGKVTEEgkkEDGESVSVKKKVLGndRIKLPKFDGVDDLTELSYLNEPAVLHNLEKRYN 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  105 SGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGESGAGKTENTKK 184
Cdd:COG5022     92 NGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKR 171
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  185 VIQYLAHVASSHKARKdhnippeypteakqGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANI 264
Cdd:COG5022    172 IMQYLASVTSSSTVEI--------------SSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKI 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  265 ETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLP-IPGQQDKEIFHETMESMRIMGFSH 343
Cdd:COG5022    238 ETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDkIDGIDDAKEFKITLDALKTIGIDE 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  344 EEIHCMLRMVSAVLQFGNIVFRKERNtDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQKAQTKEQADFA 423
Cdd:COG5022    318 EEQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAI 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  424 VEALAKATYERLFRWLVHRINRALDRTKRQGaSFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQ 503
Cdd:COG5022    397 RDSLAKALYSNLFDWIVDRINKSLDHSAAAS-NFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYV 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  504 REGIEWNFIDFgLDLQPCIDLIERpANPPGVLALLDEECWFPKATDKSFVEKVSQ--EQGTHPKFQKPRQLRDKadFCII 581
Cdd:COG5022    476 KEGIEWSFIDY-FDNQPCIDLIEK-KNPLGILSLLDEECVMPHATDESFTSKLAQrlNKNSNPKFKKSRFRDNK--FVVK 551
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  582 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEiQNIQkvyffdsyavapqgpvemdrivgldqvsgmg 661
Cdd:COG5022    552 HYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDE-ENIE------------------------------- 599
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  662 dlafgasyktKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGF 741
Cdd:COG5022    600 ----------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGF 669
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  742 PNRIIFQEFRQRYEILTPNA----IPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFRAGVLAHLEEERDLKITDIIV 817
Cdd:COG5022    670 PSRWTFDEFVQRYRILSPSKswtgEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIAT 749
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  818 SFQAAARGYLARKAFMKKQQQMSALKVMQRNCAAYLKLRHWQWWRLFTKVKPLLQVTRQDEVMQAKAVELQKVQekhtkt 897
Cdd:COG5022    750 RIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQ------ 823
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  898 qmdlKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELedILHELESRVEEEEERCQQLQGDKKKMQQh 977
Cdd:COG5022    824 ----KTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKET--IYLQSAQRVELAERQLQELKIDVKSISS- 896
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  978 vqdleeqleeeeAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEER-LSEFTSHMAEEEEKVKSLSKLRN 1056
Cdd:COG5022    897 ------------LKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIdLEEGPSIEYVKLPELNKLHEVES 964
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1057 KYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQ------QQLEELRQALARKEAELQ------AALAR 1124
Cdd:COG5022    965 KLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGalqestKQLKELPVEVAELQSASKiissesTELSI 1044
                         1130      1140      1150      1160      1170
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1125 VEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELE 1182
Cdd:COG5022   1045 LKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLE 1102
PTZ00014 PTZ00014
myosin-A; Provisional
91-850 1.34e-131

myosin-A; Provisional


Pssm-ID: 240229 [Multi-domain]  Cd Length: 821  Bit Score: 434.07  E-value: 1.34e-131
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   91 NEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHE-MPPHIYAISEAAYRSMLQDREDQSIL 169
Cdd:PTZ00014   108 NIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDkLPPHVFTTARRALENLHGVKKSQTII 187
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  170 CTGESGAGKTENTKKVIQYLAhvaSSHKARKDHNIppeypteakqgelERQLLQANPILEAFGNAKTVKNDNSSRFGKFI 249
Cdd:PTZ00014   188 VSGESGAGKTEATKQIMRYFA---SSKSGNMDLKI-------------QNAIMAANPVLEAFGNAKTIRNNNSSRFGRFM 251
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  250 RINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIF 329
Cdd:PTZ00014   252 QLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKDF 331
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  330 HETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVF--RKERNTDQASM--PDNTAA-QKLCHLLGMNVTEFTRAILTPRI 404
Cdd:PTZ00014   332 EEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIegKEEGGLTDAAAisDESLEVfNEACELLFLDYESLKKELTVKVT 411
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  405 KVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGAsFIGILDIAGFEIFQLNSFEQLCINYTNE 484
Cdd:PTZ00014   412 YAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKV-FIGMLDIFGFEVFKNNSLEQLFINITNE 490
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  485 KLQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLALLDEECWFPKATDKSFVEKVSQEQGTHP 564
Cdd:PTZ00014   491 MLQKNFVDIVFERESKLYKDEGISTEELEY-TSNESVIDLLCGKGK--SVLSILEDQCLAPGGTDEKFVSSCNTNLKNNP 567
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  565 KFqKPRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqg 644
Cdd:PTZ00014   568 KY-KPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEG-------------------- 626
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  645 pVEMDRivgldqvsgmGDLAfgasyktkKGMFrtVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQ 724
Cdd:PTZ00014   627 -VEVEK----------GKLA--------KGQL--IGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQ 685
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  725 LRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR---AGVL 801
Cdd:PTZ00014   686 LHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKkdaAKEL 765
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*....
gi 1033370542  802 AHLEEERDLKITDIIVSFQAAARGYLARKAFMKKqqqmsaLKVMQRNCA 850
Cdd:PTZ00014   766 TQIQREKLAAWEPLVSVLEALILKIKKKRKVRKN------IKSLVRIQA 808
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
896-1713 4.71e-36

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 150.25  E-value: 4.71e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  896 KTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRaRLAARKQELEDILheLESRVEEEEERCQQLQGDKKKMQ 975
Cdd:COG1196    176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQ-ELKAELRELELAL--LLAKLKELRKELEELEEELSRLE 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  976 QHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLsklr 1055
Cdd:COG1196    253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEEL---- 328
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1056 nkyeavmadmEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAv 1135
Cdd:COG1196    329 ----------KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN- 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1136 lkSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKV 1215
Cdd:COG1196    398 --ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1216 hEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEG------ENAEMQKEVKL---------LQAAKLESEQ-- 1278
Cdd:COG1196    476 -LQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGvygpvaELIKVKEKYETaleaalgnrLQAVVVENEEva 554
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1279 ------RRKKLEGQV--------QELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTE--SKTIKLAKDLA----- 1337
Cdd:COG1196    555 kkaiefLKENKAGRAtflpldriKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTlvVDDLEQARRLArklri 634
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1338 -----TVESHLQDTQELLQEETRQK---LNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEd 1409
Cdd:COG1196    635 kyrivTLDGDLVEPSGSITGGSRNKrssLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE- 713
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1410 agvaeaIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLI 1489
Cdd:COG1196    714 ------LERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1490 SARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQE 1569
Cdd:COG1196    788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1570 MRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKLLSKQVR-ELEAELDAERKQRAQALAGRKKL 1648
Cdd:COG1196    868 LEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERlEVELPELEEELEEEYEDTLETEL 947
                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542 1649 ELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEI--FIQSRESEKKLKNLEA 1713
Cdd:COG1196    948 EREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLleVIEELDKEKRERFKET 1014
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
994-1890 8.66e-36

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 149.44  E-value: 8.66e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  994 KLQLEKVSTEAKLKKMEEDLLVLEDqnskLHKERKLMEERLSeftshmaEEEEKVKSLSKLRNKYEAVMADME-DRLKKE 1072
Cdd:TIGR02168  169 KYKERRKETERKLERTRENLDRLED----ILNELERQLKSLE-------RQAEKAERYKELKAELRELELALLvLRLEEL 237
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1073 EKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQED 1152
Cdd:TIGR02168  238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1153 MESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVldmrqrhtSALE 1232
Cdd:TIGR02168  318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR--------SKVA 389
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1233 ELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVkllqaakleSEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQ 1312
Cdd:TIGR02168  390 QLELQIASLNNEIERLEARLERLEDRRERLQQEI---------EELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1313 NELDGVSGTLGSTESKTIKLAKDLAtvesHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAA---KANFS 1389
Cdd:TIGR02168  461 EALEELREELEEAEQALDAAERELA----QLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvDEGYE 536
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1390 RQMQ-----SLQQQVMETKKK------------------LEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEK 1446
Cdd:TIGR02168  537 AAIEaalggRLQAVVVENLNAakkaiaflkqnelgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK 616
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1447 GrtrLQQELDDVTVALDQQrqvvSALE-KKQKKFDQML--AEEKLISARYAEERDRAEADAreketKVLSLSRALEEALE 1523
Cdd:TIGR02168  617 A---LSYLLGGVLVVDDLD----NALElAKKLRPGYRIvtLDGDLVRPGGVITGGSAKTNS-----SILERRREIEELEE 684
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1524 TREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHE 1603
Cdd:TIGR02168  685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1604 relqnrddanddkkkllskqvrELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANkgrdeagKQLRKLQAQMKEL 1683
Cdd:TIGR02168  765 ----------------------ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR-------EALDELRAELTLL 815
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1684 WREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELAngnsgksALLDEKRHLEAR 1763
Cdd:TIGR02168  816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE-------ALLNERASLEEA 888
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1764 IGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSSVKSKYKMAIA 1843
Cdd:TIGR02168  889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1033370542 1844 TLESKVAQLEEQL---------------EQESRERILSGKL--VRRAEKKLKEVILQVDEERRN 1890
Cdd:TIGR02168  969 EARRRLKRLENKIkelgpvnlaaieeyeELKERYDFLTAQKedLTEAKETLEEAIEEIDREARE 1032
PTZ00121 PTZ00121
MAEBL; Provisional
876-1747 2.16e-23

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 109.08  E-value: 2.16e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  876 QDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQelEDILHELES 955
Cdd:PTZ00121  1068 QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKA--EDARKAEEA 1145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  956 RVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSteaKLKKMEEdllvledqNSKLHKERKLMEERLS 1035
Cdd:PTZ00121  1146 RKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAE---ELRKAED--------ARKAEAARKAEEERKA 1214
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1036 EfTSHMAEEEEKVKSLSKLRnkyEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQV-AELQQQLEELRQALARK 1114
Cdd:PTZ00121  1215 E-EARKAEDAKKAEAVKKAE---EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIkAEEARKADELKKAEEKK 1290
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1115 EAE--LQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQ 1192
Cdd:PTZ00121  1291 KADeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1193 ELRSKREQEVTELKKTIEEEVKVHEAQvlDMRQRHTSALEELSEQLEQSRRFKinlEKTKQALEGENAEMQK----EVKL 1268
Cdd:PTZ00121  1371 KKKEEAKKKADAAKKKAEEKKKADEAK--KKAEEDKKKADELKKAAAAKKKAD---EAKKKAEEKKKADEAKkkaeEAKK 1445
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1269 LQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNEldgvsgtlgSTESKtiKLAKDLATVESHLQDTQE 1348
Cdd:PTZ00121  1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK---------AEEAK--KKADEAKKAAEAKKKADE 1514
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1349 LLQEETRQKlnlSSRVRQLEEEKAAmLEQLEEEEAAKANFSRQMQSLQQ----QVMETKKKLEEDAGVA-EAIEEARRRA 1423
Cdd:PTZ00121  1515 AKKAEEAKK---ADEAKKAEEAKKA-DEAKKAEEKKKADELKKAEELKKaeekKKAEEAKKAEEDKNMAlRKAEEAKKAE 1590
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1424 AKDLESLSVRYEE----RVQACDKLEKGRTRlQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDR 1499
Cdd:PTZ00121  1591 EARIEEVMKLYEEekkmKAEEAKKAEEAKIK-AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1500 AEADAREKE--TKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEEL 1577
Cdd:PTZ00121  1670 AEEDKKKAEeaKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1578 ---EDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKLlskqvrELEAELDAERKQRAQALAGRKKLELDLQE 1654
Cdd:PTZ00121  1750 kkdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM------EVDKKIKDIFDNFANIIEGGKEGNLVIND 1823
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1655 AMAQLDAANKGRDEAGKQLRklqaqmkelwrevEEARAAREEIFIQSRESEK---KLKNLEAELLQLQEDLAASERAKRQ 1731
Cdd:PTZ00121  1824 SKEMEDSAIKEVADSKNMQL-------------EEADAFEKHKFNKNNENGEdgnKEADFNKEKDLKEDDEEEIEEADEI 1890
                          890
                   ....*....|....*.
gi 1033370542 1732 AQQERDDLADELANGN 1747
Cdd:PTZ00121  1891 EKIDKDDIEREIPNNN 1906
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
25-70 4.18e-10

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


Pssm-ID: 426949  Cd Length: 45  Bit Score: 56.67  E-value: 4.18e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1033370542   25 TAKRLVWVPSERHGFEAAGLREERGDEVMVELaENGRQVLVAKDDI 70
Cdd:pfam02736    1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVET-EDGKTVTVKKDDV 45
SPEC cd00176
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ...
1022-1233 7.91e-04

Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here


Pssm-ID: 238103 [Multi-domain]  Cd Length: 213  Bit Score: 42.82  E-value: 7.91e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1022 KLHKERKLMEERLSEFTSHMAEEE--EKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAE 1099
Cdd:cd00176      4 QFLRDADELEAWLSEKEELLSSTDygDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEE 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1100 LQQQLEELRQALARKEAELQAALARVEdEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKaeKQRRDLGEELEALKT 1179
Cdd:cd00176     84 LNQRWEELRELAEERRQRLEEALDLQQ-FFRDADDLEQWLEEKEAALASEDLGKDLESVEELL--KKHKELEEELEAHEP 160
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1033370542 1180 ELEDTLDstaAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEE 1233
Cdd:cd00176    161 RLKSLNE---LAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEE 211
 
Name Accession Description Interval E-value
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
874-1954 0e+00

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 1500.82  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  874 TRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHEL 953
Cdd:pfam01576    1 TRQEEEMQAKEEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQELEEILHEL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  954 ESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEER 1033
Cdd:pfam01576   81 EARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQKERKLLEER 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1034 LSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALAR 1113
Cdd:pfam01576  161 ISEFTSNLAEEEEKSKSLNKLKNKHEAMISDLEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1114 KEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQE 1193
Cdd:pfam01576  241 KEEELQAALARLEEETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1194 LRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAK 1273
Cdd:pfam01576  321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1274 LESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEE 1353
Cdd:pfam01576  401 QDSEHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1354 TRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVR 1433
Cdd:pfam01576  481 TRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQR 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1434 YEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLS 1513
Cdd:pfam01576  561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETKALS 640
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1514 LSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEV 1593
Cdd:pfam01576  641 LARALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEV 720
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1594 NMQALKAQHERELQNRDDANDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQL 1673
Cdd:pfam01576  721 NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIEAANKGRDEAVKQL 800
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1674 RKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSAL 1753
Cdd:pfam01576  801 KKLQAQMKDLQRELDEARASRDEIFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSAL 880
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1754 LDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSS 1833
Cdd:pfam01576  881 LDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGT 960
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1834 VKSKYKMAIATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLE 1913
Cdd:pfam01576  961 VKSKYKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRLKQLKRQLE 1040
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|.
gi 1033370542 1914 EAEEEASRANASRRRMQRELEDVTESAESMNREVTSLRNRL 1954
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESAEAMNREVTTLRSKL 1081
MYSc_Myh10 cd14920
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ...
93-797 0e+00

class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276952 [Multi-domain]  Cd Length: 673  Bit Score: 1421.70  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14920      1 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDHNIppeypteakQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14920     81 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNI---------PGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd14920    152 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQET 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd14920    232 MEAMHIMGFSHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQ 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd14920    312 KAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNH 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRQL 572
Cdd:cd14920    392 TMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQL 471
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqgpveMDRIV 652
Cdd:cd14920    472 KDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKD-----------------------VDRIV 528
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  653 GLDQVSGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLE 732
Cdd:cd14920    529 GLDQVTGMTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLE 608
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  733 GIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14920    609 GIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 673
MYSc_class_II cd01377
class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, ...
93-797 0e+00

class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. Thus, myosin II has two heads. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276951 [Multi-domain]  Cd Length: 662  Bit Score: 1320.16  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd01377      1 ASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVIDKYKGKRREEMPPHIFAIADNAYRNMLQDRENQSILITG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDHNIppeypteaKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd01377     81 ESGAGKTENTKKVIQYLASVAASSKKKKESGK--------KKGTLEDQILQANPILEAFGNAKTVRNNNSSRFGKFIRIH 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPF-NQYRFLSNGYLPIPGQQDKEIFHE 331
Cdd:cd01377    153 FGSTGKIAGADIETYLLEKSRVVRQAKGERNYHIFYQLLSGADPELKEKLLLTGDpSYYFFLSQGELTIDGVDDAEEFKL 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYV 411
Cdd:cd01377    233 TDEAFDILGFSEEEKMSIFKIVAAILHLGNIKFKQRRREEQAELDGTEEADKAAHLLGVNSSDLLKALLKPRIKVGREWV 312
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  412 QKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFN 491
Cdd:cd01377    313 TKGQNKEQVVFSVGALAKALYERLFLWLVKRINKTLD-TKSKRQYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFN 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  492 HTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPanPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPK-FQKPR 570
Cdd:cd01377    392 HHMFVLEQEEYKKEGIEWTFIDFGLDLQPTIDLIEKP--NMGILSILDEECVFPKATDKTFVEKLYSNHLGKSKnFKKPK 469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  571 QLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEiqniqkvyffdsyavapqgpvemdr 650
Cdd:cd01377    470 PKKSEAHFILKHYAGDVEYNIDGWLEKNKDPLNENVVALLKKSSDPLVASLFKDY------------------------- 524
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  651 ivgldqvsgMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGV 730
Cdd:cd01377    525 ---------EESGGGGGKKKKKGGSFRTVSQLHKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKIDAPLVLHQLRCNGV 595
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542  731 LEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd01377    596 LEGIRICRKGFPNRIIFAEFKQRYSILAPNAIPKGFDDGKAACEKILKALQLDPELYRIGNTKVFFK 662
MYSc_Myh18 cd14932
class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain ...
93-797 0e+00

class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain 18. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276895 [Multi-domain]  Cd Length: 676  Bit Score: 1236.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14932      1 ASVLHNLKERYYSGLIYTYSGLFCVVINPYKYLPIYSEEIVNMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDHNippeyPTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14932     81 ESGAGKTENTKKVIQYLAYVASSFKTKKDQS-----SIALSHGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd14932    156 FDVNGYIVGANIETYLLEKSRAIRQAKDERAFHIFYYLLTGAGDKLRSELCLEDYSKYRFLSNGNVTIPGQQDKELFAET 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd14932    236 MEAFRIMSIPEEEQTGLLKVVSAVLQLGNMSFKKERNSDQASMPDDTAAQKVCHLLGMNVTDFTRAILSPRIKVGRDYVQ 315
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd14932    316 KAQTQEQAEFAVEALAKASYERMFRWLVMRINKALDKTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNH 395
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRQL 572
Cdd:cd14932    396 TMFILEQEEYQREGIEWSFIDFGLDLQPCIELIEKPNGPPGILALLDEECWFPKATDKSFVEKVVQEQGNNPKFQKPKKL 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqgpveMDRIV 652
Cdd:cd14932    476 KDDADFCIIHYAGKVDYKANEWLMKNMDPLNENVATLLNQSTDKFVSELWKD-----------------------VDRIV 532
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  653 GLDQVSGMGDLAFGAsYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLE 732
Cdd:cd14932    533 GLDKVAGMGESLHGA-FKTRKGMFRTVGQLYKEQLMNLMTTLRNTNPNFVRCIIPNHEKKAGKLAHHLVLDQLRCNGVLE 611
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  733 GIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14932    612 GIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACVLMVKALELDPNLYRIGQSKVFFR 676
MYSc_Myh9 cd14919
class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy ...
93-797 0e+00

class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy chain 9 (also called NMMHCA, NMHC-II-A, MHA, FTNS, EPSTS, and DFNA17). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. The encoded protein is a myosin IIA heavy chain that contains an IQ domain and a myosin head-like domain which is involved in several important functions, including cytokinesis, cell motility and maintenance of cell shape. Defects in this gene have been associated with non-syndromic sensorineural deafness autosomal dominant type 17, Epstein syndrome, Alport syndrome with macrothrombocytopenia, Sebastian syndrome, Fechtner syndrome and macrothrombocytopenia with progressive sensorineural deafness. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276883 [Multi-domain]  Cd Length: 670  Bit Score: 1196.45  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14919      1 ASVLHNLKERYYSGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDhnippeypteakQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14919     81 ESGAGKTENTKKVIQYLAHVASSHKSKKD------------QGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd14919    149 FDVNGYIVGANIETYLLEKSRAIRQAKEERTFHIFYYLLSGAGEHLKTDLLLEPYNKYRFLSNGHVTIPGQQDKDMFQET 228
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd14919    229 MEAMRIMGIPEEEQMGLLRVISGVLQLGNIVFKKERNTDQASMPDNTAAQKVSHLLGINVTDFTRGILTPRIKVGRDYVQ 308
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd14919    309 KAQTKEQADFAIEALAKATYERMFRWLVLRINKALDKTKRQGASFIGILDIAGFEIFDLNSFEQLCINYTNEKLQQLFNH 388
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRQL 572
Cdd:cd14919    389 TMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIEKPAGPPGILALLDEECWFPKATDKSFVEKVVQEQGTHPKFQKPKQL 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqgpveMDRIV 652
Cdd:cd14919    469 KDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNIATLLHQSSDKFVSELWKD-----------------------VDRII 525
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  653 GLDQVSGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLE 732
Cdd:cd14919    526 GLDQVAGMSETALPGAFKTRKGMFRTVGQLYKEQLAKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLE 605
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  733 GIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14919    606 GIRICRQGFPNRVVFQEFRQRYEILTPNSIPKGFMDGKQACVLMIKALELDSNLYRIGQSKVFFR 670
MYSc_Myh2_insects_mollusks cd14911
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ...
93-797 0e+00

class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in insects and mollusks. This gene encodes a member of the class II or conventional myosin heavy chains, and functions in skeletal muscle contraction. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276876 [Multi-domain]  Cd Length: 674  Bit Score: 1166.29  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14911      1 ASVLHNIKDRYYSGLIYTYSGLFCVVVNPYKKLPIYTEKIMERYKGIKRHEVPPHVFAITDSAYRNMLGDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDHNIPPEYPTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14911     81 ESGAGKTENTKKVIQFLAYVAASKPKGSGAVPHPAVNPAVLIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd14911    161 FDASGFISGANIETYLLEKSRAIRQAKDERTFHIFYQLLAGATPEQREKFILDDVKSYAFLSNGSLPVPGVDDYAEFQAT 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd14911    241 VKSMNIMGMTSEDFNSIFRIVSAVLLFGSMKFRQERNNDQATLPDNTVAQKIAHLLGLSVTDMTRAFLTPRIKVGRDFVT 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd14911    321 KAQTKEQVEFAVEAIAKACYERMFKWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNH 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKpRQL 572
Cdd:cd14911    401 TMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPG---GIMALLDEECWFPKATDKTFVDKLVSAHSMHPKFMK-TDF 476
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEiqniqkvyffdsyavapqgpvemdRIV 652
Cdd:cd14911    477 RGVADFAIVHYAGRVDYSAAKWLMKNMDPLNENIVSLLQGSQDPFVVNIWKDA------------------------EIV 532
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  653 GLDQvSGMGDLAFGAsyKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLE 732
Cdd:cd14911    533 GMAQ-QALTDTQFGA--RTRKGMFRTVSHLYKEQLAKLMDTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLE 609
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  733 GIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14911    610 GIRICRQGFPNRIPFQEFRQRYELLTPNVIPKGFMDGKKACEKMIQALELDSNLYRVGQSKIFFR 674
MYSc_Myh11 cd14921
class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin ...
93-797 0e+00

class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin heavy chain 11 (also called SMMHC, SMHC). The gene product is a subunit of a hexameric protein that consists of two heavy chain subunits and two pairs of non-identical light chain subunits. It functions as a major contractile protein, converting chemical energy into mechanical energy through the hydrolysis of ATP. The gene encoding a human ortholog of rat NUDE1 is transcribed from the reverse strand of this gene, and its 3' end overlaps with that of the latter. Inversion of the MYH11 locus is one of the most frequent chromosomal aberrations found in acute myeloid leukemia. Alternative splicing generates isoforms that are differentially expressed, with ratios changing during muscle cell maturation. Mutations in MYH11 have been described in individuals with thoracic aortic aneurysms leading to acute aortic dissections with patent ductus arteriosus. MYH11 mutations are also thought to contribute to human colorectal cancer and are also associated with Peutz-Jeghers syndrome. The mutations found in human intestinal neoplasia result in unregulated proteins with constitutive motor activity, similar to the mutant myh11 zebrafish. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276885 [Multi-domain]  Cd Length: 673  Bit Score: 1164.78  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14921      1 ASVLHNLRERYFSGLIYTYSGLFCVVVNPYKHLPIYSEKIVDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDHNIppeypteakQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14921     81 ESGAGKTENTKKVIQYLAVVASSHKGKKDTSI---------TGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd14921    152 FDVTGYIVGANIETYLLEKSRAIRQARDERTFHIFYYLIAGAKEKMRSDLLLEGFNNYTFLSNGFVPIPAAQDDEMFQET 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd14921    232 LEAMSIMGFSEEEQLSILKVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQ 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd14921    312 KAQTKEQADFAIEALAKATYERLFRWILTRVNKALDKTHRQGASFLGILDIAGFEIFEVNSFEQLCINYTNEKLQQLFNH 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRQL 572
Cdd:cd14921    392 TMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPNNPPGVLALLDEECWFPKATDKSFVEKLCTEQGNHPKFQKPKQL 471
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqgpveMDRIV 652
Cdd:cd14921    472 KDKTEFSIIHYAGKVDYNASAWLTKNMDPLNDNVTSLLNASSDKFVADLWKD-----------------------VDRIV 528
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  653 GLDQVSGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLE 732
Cdd:cd14921    529 GLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLGKLMTTLRNTTPNFVRCIIPNHEKRSGKLDAFLVLEQLRCNGVLE 608
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  733 GIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14921    609 GIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFR 673
MYSc_Myh19 cd15896
class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain ...
93-797 0e+00

class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain 19. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276899 [Multi-domain]  Cd Length: 675  Bit Score: 1163.68  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd15896      1 ASVLHNLKERYYSGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDHNippeyPTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd15896     81 ESGAGKTENTKKVIQYLAHVASSHKTKKDQN-----SLALSHGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd15896    156 FDVNGYIVGANIETYLLEKSRAIRQAKEERTFHIFYYLLTGAGDKLRSELLLENYNNYRFLSNGNVTIPGQQDKDLFTET 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd15896    236 MEAFRIMGIPEDEQIGMLKVVASVLQLGNMSFKKERHTDQASMPDNTAAQKVCHLMGMNVTDFTRAILSPRIKVGRDYVQ 315
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd15896    316 KAQTQEQAEFAVEALAKATYERMFRWLVMRINKALDKTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNH 395
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRQL 572
Cdd:cd15896    396 TMFILEQEEYQREGIEWSFIDFGLDLQPCIDLIEKPASPPGILALLDEECWFPKATDKSFVEKVLQEQGTHPKFFKPKKL 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqgpveMDRIV 652
Cdd:cd15896    476 KDEADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLNQSTDKFVSELWKD-----------------------VDRIV 532
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  653 GLDQVSGMGDLAfgASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLE 732
Cdd:cd15896    533 GLDKVSGMSEMP--GAFKTRKGMFRTVGQLYKEQLSKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLE 610
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  733 GIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd15896    611 GIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACVLMIKSLELDPNLYRIGQSKVFFR 675
MYSc_Myh14_mammals cd14930
class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy ...
93-797 0e+00

class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy chain 14 (also called FLJ13881, KIAA2034, MHC16, MYH17). Its members include mammals, chickens, and turtles. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.


Pssm-ID: 276893 [Multi-domain]  Cd Length: 670  Bit Score: 1159.47  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14930      1 ASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDHNIPpeypteakqGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14930     81 ESGAGKTENTKKVIQYLAHVASSPKGRKEPGVP---------GELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQdKEIFHET 332
Cdd:cd14930    152 FDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSSSPGQE-RELFQET 230
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd14930    231 LESLRVLGFSHEEITSMLRMVSAVLQFGNIVLKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQ 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd14930    311 KAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRQL 572
Cdd:cd14930    391 TMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHL 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqgpveMDRIV 652
Cdd:cd14930    471 RDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKD-----------------------VEGIV 527
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  653 GLDQVSGMGDLAFGAsyKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLE 732
Cdd:cd14930    528 GLEQVSSLGDGPPGG--RPRRGMFRTVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLE 605
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  733 GIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14930    606 GIRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFR 670
Myosin_head pfam00063
Myosin head (motor domain);
81-797 0e+00

Myosin head (motor domain);


Pssm-ID: 395017  Cd Length: 674  Bit Score: 1102.72  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   81 VEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSML 160
Cdd:pfam00063    1 VEDMVELSYLNEPSVLHNLKKRYKSDLIYTYSGLVLVAVNPYKQLPIYSEDMIKAYRGKRRGELPPHIFAIADEAYRSML 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  161 QDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKArkdhnippeypteAKQGELERQLLQANPILEAFGNAKTVKND 240
Cdd:pfam00063   81 QDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSA-------------GNVGRLEEQILQSNPILEAFGNAKTVRNN 147
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  241 NSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSN-GYLP 319
Cdd:pfam00063  148 NSSRFGKYIEIQFDAKGDIVGGKIETYLLEKSRVVYQAEGERNYHIFYQLLAGASAQLKKELRLTNPKDYHYLSQsGCYT 227
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  320 IPGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAI 399
Cdd:pfam00063  228 IDGIDDSEEFKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKERNDEQAVPDDTENLQKAASLLGIDSTELEKAL 307
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  400 LTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCI 479
Cdd:pfam00063  308 CKRRIKTGRETVSKPQNVEQANYARDALAKAIYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGFEIFEKNSFEQLCI 387
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  480 NYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLALLDEECWFPKATDKSFVEKVSQE 559
Cdd:pfam00063  388 NYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFG-DNQPCIDLIEKK--PLGILSLLDEECLFPKATDQTFLDKLYST 464
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  560 QGTHPKFQKPRQlRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEiqniqkvyffdsya 639
Cdd:pfam00063  465 FSKHPHFQKPRL-QGETHFIIKHYAGDVEYNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELFPDY-------------- 529
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  640 vapqgpvemdrivGLDQVSGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPH 719
Cdd:pfam00063  530 -------------ETAESAAANESGKSTPKRTKKKRFITVGSQFKESLGELMKTLNSTNPHYIRCIKPNEKKRAGVFDNS 596
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542  720 LVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:pfam00063  597 LVLHQLRCNGVLEGIRIRRAGFPNRITFQEFVQRYRILAPKTWPKWKGDAKKGCEAILQSLNLDKEEYQFGKTKIFFR 674
MYSc smart00242
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical ...
74-809 0e+00

Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.


Pssm-ID: 214580 [Multi-domain]  Cd Length: 677  Bit Score: 1015.16  E-value: 0e+00
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542    74 NPPKFTKVEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISE 153
Cdd:smart00242    1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   154 AAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKarkdhnippeypteaKQGELERQLLQANPILEAFGN 233
Cdd:smart00242   81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNT---------------EVGSVEDQILESNPILEAFGN 145
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   234 AKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFL 313
Cdd:smart00242  146 AKTLRNNNSSRFGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYL 225
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   314 SNG-YLPIPGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNT-AAQKLCHLLGMN 391
Cdd:smart00242  226 NQGgCLTVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKeELSNAAELLGVD 305
                           330       340       350       360       370       380       390       400
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   392 VTEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQL 471
Cdd:smart00242  306 PEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINQSLS-FKDGSTYFIGVLDIYGFEIFEV 384
                           410       420       430       440       450       460       470       480
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   472 NSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPKATDKS 551
Cdd:smart00242  385 NSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFF-DNQDCIDLIE--KKPPGILSLLDEECRFPKGTDQT 461
                           490       500       510       520       530       540       550       560
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   552 FVEKVSQEQGTHPKFQKPRQlRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEIQNiqk 631
Cdd:smart00242  462 FLEKLNQHHKKHPHFSKPKK-KGRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLIELLQSSKNPLIASLFPSGVSN--- 537
                           570       580       590       600       610       620       630       640
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   632 vyffdsyavapqgpvemdrivgldqvsgmgdlafgasyKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEK 711
Cdd:smart00242  538 --------------------------------------AGSKKRFQTVGSQFKEQLNELMDTLNSTNPHFIRCIKPNEEK 579
                           650       660       670       680       690       700       710       720
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   712 RAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQ 791
Cdd:smart00242  580 KPGDFDSSLVLHQLRYLGVLENIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKKACEALLQSLGLDEDEYQLGK 659
                           730
                    ....*....|....*...
gi 1033370542   792 SKIFFRAGVLAHLEEERD 809
Cdd:smart00242  660 TKVFLRPGQLAELEELRE 677
COG5022 COG5022
Myosin heavy chain [General function prediction only];
30-1182 0e+00

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 914.46  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   30 VWVPSERHGFEAAGLREERGDEVMVELA---ENGRQVLVAKDDIQ--KMNPPKFTKVEDMAELTCLNEASVLHNLKDRYY 104
Cdd:COG5022     12 CWIPDEEKGWIWAEIIKEAFNKGKVTEEgkkEDGESVSVKKKVLGndRIKLPKFDGVDDLTELSYLNEPAVLHNLEKRYN 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  105 SGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGESGAGKTENTKK 184
Cdd:COG5022     92 NGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKR 171
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  185 VIQYLAHVASSHKARKdhnippeypteakqGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANI 264
Cdd:COG5022    172 IMQYLASVTSSSTVEI--------------SSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKI 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  265 ETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLP-IPGQQDKEIFHETMESMRIMGFSH 343
Cdd:COG5022    238 ETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDkIDGIDDAKEFKITLDALKTIGIDE 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  344 EEIHCMLRMVSAVLQFGNIVFRKERNtDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQKAQTKEQADFA 423
Cdd:COG5022    318 EEQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAI 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  424 VEALAKATYERLFRWLVHRINRALDRTKRQGaSFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQ 503
Cdd:COG5022    397 RDSLAKALYSNLFDWIVDRINKSLDHSAAAS-NFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYV 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  504 REGIEWNFIDFgLDLQPCIDLIERpANPPGVLALLDEECWFPKATDKSFVEKVSQ--EQGTHPKFQKPRQLRDKadFCII 581
Cdd:COG5022    476 KEGIEWSFIDY-FDNQPCIDLIEK-KNPLGILSLLDEECVMPHATDESFTSKLAQrlNKNSNPKFKKSRFRDNK--FVVK 551
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  582 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEiQNIQkvyffdsyavapqgpvemdrivgldqvsgmg 661
Cdd:COG5022    552 HYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDE-ENIE------------------------------- 599
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  662 dlafgasyktKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGF 741
Cdd:COG5022    600 ----------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGF 669
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  742 PNRIIFQEFRQRYEILTPNA----IPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFRAGVLAHLEEERDLKITDIIV 817
Cdd:COG5022    670 PSRWTFDEFVQRYRILSPSKswtgEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIAT 749
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  818 SFQAAARGYLARKAFMKKQQQMSALKVMQRNCAAYLKLRHWQWWRLFTKVKPLLQVTRQDEVMQAKAVELQKVQekhtkt 897
Cdd:COG5022    750 RIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQ------ 823
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  898 qmdlKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELedILHELESRVEEEEERCQQLQGDKKKMQQh 977
Cdd:COG5022    824 ----KTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKET--IYLQSAQRVELAERQLQELKIDVKSISS- 896
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  978 vqdleeqleeeeAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEER-LSEFTSHMAEEEEKVKSLSKLRN 1056
Cdd:COG5022    897 ------------LKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIdLEEGPSIEYVKLPELNKLHEVES 964
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1057 KYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQ------QQLEELRQALARKEAELQ------AALAR 1124
Cdd:COG5022    965 KLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGalqestKQLKELPVEVAELQSASKiissesTELSI 1044
                         1130      1140      1150      1160      1170
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1125 VEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELE 1182
Cdd:COG5022   1045 LKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLE 1102
MYSc cd00124
Myosin motor domain superfamily; Myosin motor domain. The catalytic (head) domain has ATPase ...
93-797 0e+00

Myosin motor domain superfamily; Myosin motor domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276950  Cd Length: 633  Bit Score: 855.73  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRH-EMPPHIYAISEAAYRSMLQDREDQSILCT 171
Cdd:cd00124      1 AAILHNLRERYARDLIYTYVGDILVAVNPFKWLPLYSEEVMEKYRGKGRSaDLPPHVFAVADAAYRAMLRDGQNQSILIS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  172 GESGAGKTENTKKVIQYLAHVASSHKARKDHNippeypteakQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd00124     81 GESGAGKTETTKLVLKYLAALSGSGSSKSSSS----------ASSIEQQILQSNPILEAFGNAKTVRNDNSSRFGKFIEL 150
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFL-----SNGYLPIPGQQDK 326
Cdd:cd00124    151 QFDPTGRLVGASIETYLLEKSRVVSQAPGERNFHIFYQLLAGLSDGAREELKLELLLSYYYLndylnSSGCDRIDGVDDA 230
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  327 EIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVF--RKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRI 404
Cdd:cd00124    231 EEFQELLDALDVLGFSDEEQDSIFRILAAILHLGNIEFeeDEEDEDSSAEVADDESLKAAAKLLGVDAEDLEEALTTRTI 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  405 KVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQ-GASFIGILDIAGFEIFQLNSFEQLCINYTN 483
Cdd:cd00124    311 KVGGETITKPLTVEQAEDARDALAKALYSRLFDWLVNRINAALSPTDAAeSTSFIGILDIFGFENFEVNSFEQLCINYAN 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  484 EKLQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPanPPGVLALLDEECWFPKATDKSFVEKVSQEQGTH 563
Cdd:cd00124    391 EKLQQFFNQHVFKLEQEEYEEEGIDWSFIDF-PDNQDCLDLIEGK--PLGILSLLDEECLFPKGTDATFLEKLYSAHGSH 467
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  564 PKFQKPRQLRDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADkftaelwkdeiqniqkvyffdsyavapq 643
Cdd:cd00124    468 PRFFSKKRKAKLE-FGIKHYAGDVTYDADGFLEKNKDTLPPDLVDLLRSGSQ---------------------------- 518
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  644 gpvemdrivgldqvsgmgdlafgasyktkkgmfrtvgqlYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLD 723
Cdd:cd00124    519 ---------------------------------------FRSQLDALMDTLNSTQPHFVRCIKPNDEKKPGLFDPELVLE 559
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1033370542  724 QLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd00124    560 QLRCAGVLEAVRIRRAGYPVRLPFDEFLKRYRILAPGATEKASDSKKAAVLALLLLLKLDSSGYQLGKTKVFLR 633
MYSc_Myh7b cd14927
class II myosin heavy chain 7b, motor domain; Myosin motor domain of cardiac muscle, beta ...
93-797 0e+00

class II myosin heavy chain 7b, motor domain; Myosin motor domain of cardiac muscle, beta myosin heavy chain 7b (also called KIAA1512, dJ756N5.1, MYH14, MHC14). MYH7B is a slow-twitch myosin. Mutations in this gene result in one form of autosomal dominant hearing impairment. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276953 [Multi-domain]  Cd Length: 676  Bit Score: 775.28  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14927      1 ASVLHNLRRRYSRWMIYTYSGLFCVTVNPYKWLPVYTAPVVAAYKGKRRSEAPPHIYAIADNAYNDMLRNRENQSMLITG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDhniPPEYPTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14927     81 ESGAGKTVNTKRVIQYFAIVAALGDGPGK---KAQFLATKTGGTLEDQIIEANPAMEAFGNAKTLRNDNSSRFGKFIRIH 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLL--EPFNqYRFLSNGYLPIPGQQDKEIFH 330
Cdd:cd14927    158 FGPTGKLASADIDIYLLEKSRVIFQQPGERSYHIYYQILSGKKPELQDMLLVsmNPYD-YHFCSQGVTTVDNMDDGEELM 236
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  331 ETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDY 410
Cdd:cd14927    237 ATDHAMDILGFSPDEKYGCYKIVGAIMHFGNMKFKQKQREEQAEADGTESADKAAYLMGVSSADLLKGLLHPRVKVGNEY 316
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  411 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLF 490
Cdd:cd14927    317 VTKGQSVEQVVYAVGALAKATYDRMFKWLVSRINQTLD-TKLPRQFFIGVLDIAGFEIFEFNSFEQLCINFTNEKLQQFF 395
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  491 NHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKVSQEQ-GTHPKFQKP 569
Cdd:cd14927    396 NHHMFILEQEEYKREGIEWVFIDFGLDLQACIDLIEKPL---GILSILEEECMFPKASDASFKAKLYDNHlGKSPNFQKP 472
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  570 R---QLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELwkdeiqniqkvyfFDSYavapqgpv 646
Cdd:cd14927    473 RpdkKRKYEAHFEVVHYAGVVPYNIVGWLDKNKDPLNETVVAIFQKSQNKLLATL-------------YENY-------- 531
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  647 emdriVGLDQVsgmGDLAFGASYKTKKGM-FRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQL 725
Cdd:cd14927    532 -----VGSDST---EDPKSGVKEKRKKAAsFQTVSQLHKENLNKLMTNLRATQPHFVRCIIPNETKTPGVMDPFLVLHQL 603
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1033370542  726 RCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPK-GFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14927    604 RCNGVLEGIRICRKGFPNRILYADFKQRYRILNPSAIPDdKFVDSRKATEKLLGSLDIDHTQYQFGHTKVFFK 676
MYSc_Myh3 cd14913
class II myosin heavy chain 3, motor domain; Myosin motor domain of fetal skeletal muscle ...
94-797 0e+00

class II myosin heavy chain 3, motor domain; Myosin motor domain of fetal skeletal muscle myosin heavy chain 3 (MYHC-EMB, MYHSE1, HEMHC, SMHCE) in tetrapods including mammals, lizards, and frogs. This gene is a member of the MYH family and encodes a protein with an IQ domain and a myosin head-like domain. Mutations in this gene have been associated with two congenital contracture (arthrogryposis) syndromes, Freeman-Sheldon syndrome and Sheldon-Hall syndrome. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276878 [Multi-domain]  Cd Length: 668  Bit Score: 758.05  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd14913      2 AVLYNLKDRYTSWMIYTYSGLFCVTVNPYKWLPVYNPEVVEGYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVASSHKARKDHNippeyptEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd14913     82 SGAGKTVNTKRVIQYFATIAATGDLAKKKD-------SKMKGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHF 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLL--EPFNqYRFLSNGYLPIPGQQDKEIFHE 331
Cdd:cd14913    155 GTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQILSNKKPELIELLLIttNPYD-YPFISQGEILVASIDDAEELLA 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGMNVTEFTRAILTPRIKVGRDY 410
Cdd:cd14913    234 TDSAIDILGFTPEEKSGLYKLTGAVMHYGNMKFKQKQREEQAE-PDGTeVADKTAYLMGLNSSDLLKALCFPRVKVGNEY 312
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  411 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLF 490
Cdd:cd14913    313 VTKGQTVDQVHHAVNALSKSVYEKLFLWMVTRINQQLD-TKLPRQHFIGVLDIAGFEIFEYNSLEQLCINFTNEKLQQFF 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  491 NHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKV-SQEQGTHPKFQKP 569
Cdd:cd14913    392 NHHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLyDQHLGKSNNFQKP 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  570 RQLRDKAD--FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELwkdeiqniqkvyfFDSYAVAPqgpve 647
Cdd:cd14913    469 KVVKGRAEahFSLIHYAGTVDYSVSGWLEKNKDPLNETVVGLYQKSSNRLLAHL-------------YATFATAD----- 530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  648 mdrivgldqvsgmGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRC 727
Cdd:cd14913    531 -------------ADSGKKKVAKKKGSSFQTVSALFRENLNKLMSNLRTTHPHFVRCIIPNETKTPGAMEHSLVLHQLRC 597
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542  728 NGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKG-FMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14913    598 NGVLEGIRICRKGFPNRILYGDFKQRYRVLNASAIPEGqFIDSKKACEKLLASIDIDHTQYKFGHTKVFFK 668
MYSc_Myh1_insects_crustaceans cd14909
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle ...
93-797 0e+00

class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle myosin heavy chain 1 (also called MYHSA1, MYHa, MyHC-2X/D, MGC133384) in insects and crustaceans. Myh1 is a type I skeletal muscle myosin that in Humans is encoded by the MYH1 gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276874  Cd Length: 666  Bit Score: 743.58  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14909      1 ASVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNEVPPHIFAISDGAYVDMLTNHVNQSMLITG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDhnippeyptEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14909     81 ESGAGKTENTKKVIAYFATVGASKKTDEA---------AKSKGSLEDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIH 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLL-EPFNQYRFLSNGYLPIPGQQDKEIFHE 331
Cdd:cd14909    152 FGPTGKLAGADIETYLLEKARVISQQSLERSYHIFYQIMSGSVPGVKEMCLLsDNIYDYYIVSQGKVTVPNVDDGEEFSL 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYV 411
Cdd:cd14909    232 TDQAFDILGFTKQEKEDVYRITAAVMHMGGMKFKQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPRIKVGNEFV 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  412 QKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFN 491
Cdd:cd14909    312 TQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLD-TQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNEKLQQFFN 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  492 HTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKVSQEQ-GTHPKFQKPR 570
Cdd:cd14909    391 HHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKPM---GILSILEEESMFPKATDQTFSEKLTNTHlGKSAPFQKPK 467
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  571 QLR---DKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEiqniqkvyffdsyavAPQgpve 647
Cdd:cd14909    468 PPKpgqQAAHFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQFKKSQNKLLIEIFADH---------------AGQ---- 528
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  648 mdrivgldqvSGMGDLAFGASYKtKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRC 727
Cdd:cd14909    529 ----------SGGGEQAKGGRGK-KGGGFATVSSAYKEQLNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTC 597
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  728 NGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIpKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14909    598 NGVLEGIRICRKGFPNRMMYPDFKMRYKILNPAGI-QGEEDPKKAAEIILESIALDPDQYRLGHTKVFFR 666
MYSc_Myh16 cd14934
class II myosin heavy chain 16, motor domain; Myosin motor domain of myosin heavy chain 16 ...
93-797 0e+00

class II myosin heavy chain 16, motor domain; Myosin motor domain of myosin heavy chain 16 pseudogene (also called MHC20, MYH16, and myh5), encoding a sarcomeric myosin heavy chain expressed in nonhuman primate masticatory muscles, is inactivated in humans. This cd contains Myh16 in mammals. MYH16 has intermediate fibres between that of slow type 1 and fast 2B fibres, but exert more force than any other fibre type examined. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.


Pssm-ID: 276896 [Multi-domain]  Cd Length: 659  Bit Score: 722.20  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14934      1 ASVLDNLRQRYTNMRIYTYSGLFCVTVNPYKWLPIYGARVANMYKGKKRTEMPPHLFSISDNAYHDMLMDRENQSMLITG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKDhnippeypteaKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14934     81 ESGAGKTENTKKVIQYFANIGGTGKQSSD-----------GKGSLEDQIIQANPVLEAFGNAKTTRNNNSSRFGKFIRIH 149
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPF-NQYRFLSNGYLPIPGQQDKEIFHE 331
Cdd:cd14934    150 FGTTGKLAGADIESYLLEKSRVISQQAAERGYHIFYQILSNKKPELIESLLLVPNpKEYHWVSQGVTVVDNMDDGEELQI 229
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYV 411
Cdd:cd14934    230 TDVAFDVLGFSAEEKIGVYKLTGGIMHFGNMKFKQKPREEQAEVDTTEVADKVAHLMGLNSGELQKGITRPRVKVGNEFV 309
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  412 QKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFN 491
Cdd:cd14934    310 QKGQNMEQCNNSIGALGKAVYDKMFKWLVVRINKTLD-TKMQRQFFIGVLDIAGFEIFEFNSFEQLCINFTNEKLQQFFN 388
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  492 HTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKVSQEQ-GTHPKFQKPR 570
Cdd:cd14934    389 HHMFVLEQEEYKREGIEWVFIDFGLDLQACIDLLEKPM---GIFSILEEQCVFPKATDATFKAALYDNHlGKSSNFLKPK 465
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  571 QLRDK---ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEIqniqkvyffdsyavapqgpve 647
Cdd:cd14934    466 GGKGKgpeAHFELVHYAGTVGYNITGWLEKNKDPLNETVVGLFQKSSLGLLALLFKEEE--------------------- 524
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  648 mdrivgldqvsgmgdlAFGASYKTKKG-MFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLR 726
Cdd:cd14934    525 ----------------APAGSKKQKRGsSFMTVSNFYREQLNKLMTTLHSTAPHFVRCIVPNEFKQSGVVDAHLIMHQLA 588
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542  727 CNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14934    589 CNGVLEGIRICRKGFPNRLQYPEFKQRYQVLNPNVIPQGFVDNKKASELLLGSIDLDVNEYKIGHTKVFFR 659
MYSc_Myo5 cd01380
class V myosin, motor domain; Myo5, also called heavy chain 12, myoxin, are dimeric myosins ...
94-797 0e+00

class V myosin, motor domain; Myo5, also called heavy chain 12, myoxin, are dimeric myosins that transport a variety of intracellular cargo processively along actin filaments, such as melanosomes, synaptic vesicles, vacuoles, and mRNA. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. It also contains a IQ domain and a globular DIL domain. Myosin V is a class of actin-based motor proteins involved in cytoplasmic vesicle transport and anchorage, spindle-pole alignment and mRNA translocation. The protein encoded by this gene is abundant in melanocytes and nerve cells. Mutations in this gene cause Griscelli syndrome type-1 (GS1), Griscelli syndrome type-3 (GS3) and neuroectodermal melanolysosomal disease, or Elejalde disease. Multiple alternatively spliced transcript variants encoding different isoforms have been reported, but the full-length nature of some variants has not been determined. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Note that the Dictyostelium myoVs are not contained in this child group. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276831 [Multi-domain]  Cd Length: 629  Bit Score: 710.46  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSG-LIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd01380      2 AVLHNLKVRFCQRnAIYTYCGIVLVAINPYEDLPIYGEDIIQAYSGQNMGELDPHIFAIAEEAYRQMARDEKNQSIIVSG 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASShkARKDHNIppeypteakqgelERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd01380     82 ESGAGKTVSAKYAMRYFATVGGS--SSGETQV-------------EEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIEIL 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNG-YLPIPGQQDKEIFHE 331
Cdd:cd01380    147 FDKNYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCAAASLPELKELHLGSAEDFFYTNQGgSPVIDGVDDAAEFEE 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYV 411
Cdd:cd01380    227 TRKALTLLGISEEEQMEIFRILAAILHLGNVEIKATRNDSASISPDDEHLQIACELLGIDESQLAKWLCKRKIVTRSEVI 306
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  412 QKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGA-SFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLF 490
Cdd:cd01380    307 VKPLTLQQAIVARDALAKHIYAQLFDWIVDRINKALASPVKEKQhSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQF 386
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  491 NHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIErpaNPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPK--FQK 568
Cdd:cd01380    387 NQHVFKLEQEEYVKEEIEWSFIDF-YDNQPCIDLIE---GKLGILDLLDEECRLPKGSDENWAQKLYNQHLKKPNkhFKK 462
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  569 PRqlRDKADFCIIHYAGKVDYKADEWLMKNMDPLNdnvatllhqsadkftaelwkDEIQNIQKvyffdsyavapqgpvem 648
Cdd:cd01380    463 PR--FSNTAFIVKHFADDVEYQVEGFLEKNRDTVS--------------------EEHLNVLK----------------- 503
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  649 drivgldqvsgmgdlafgASYKTKKgmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCN 728
Cdd:cd01380    504 ------------------ASKNRKK----TVGSQFRDSLILLMETLNSTTPHYVRCIKPNDEKLPFTFDPKRVVQQLRAC 561
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542  729 GVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGfMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd01380    562 GVLETIRISAAGFPSRWTYEEFFSRYRVLLPSKEWLR-DDKKKTCENILENLILDPDKYQFGKTKIFFR 629
MYSc_Myh15_mammals cd14929
class II myosin heavy chain 15, motor domain; Myosin motor domain of sarcomeric myosin heavy ...
93-797 0e+00

class II myosin heavy chain 15, motor domain; Myosin motor domain of sarcomeric myosin heavy chain 15 in mammals (also called KIAA1000) . MYH15 is a slow-twitch myosin. Myh15 is a ventricular myosin heavy chain. Myh15 is absent in embryonic and fetal muscles and is found in orbital layer of extraocular muscles at birth. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276892 [Multi-domain]  Cd Length: 662  Bit Score: 703.66  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14929      1 ASVLHTLRRRYDHWMIYTYSGLFCVTINPYKWLPVYQKEVMAAYKGKRRSEAPPHIFAVANNAFQDMLHNRENQSILFTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARKdhnippeypteaKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14929     81 ESGAGKTVNTKHIIQYFATIAAMIESKK------------KLGALEDQIMQANPVLEAFGNAKTLRNDNSSRFGKFIRMH 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd14929    149 FGARGMLSSADIDIYLLEKSRVIFQQPGERNYHIFYQILSGKKELRDLLLVSANPSDFHFCSCGAVAVESLDDAEELLAT 228
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd14929    229 EQAMDILGFLPDEKYGCYKLTGAIMHFGNMKFKQKPREEQLEADGTENADKAAFLMGINSSELVKGLIHPRIKVGNEYVT 308
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd14929    309 RSQNIEQVTYAVGALSKSIYERMFKWLVARINRVLD-AKLSRQFFIGILDITGFEILDYNSLEQLCINFTNEKLQQFFNQ 387
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKVSQEQ-GTHPKFQKPRQ 571
Cdd:cd14929    388 HMFVLEQEEYRKEGIDWVSIDFGLDLQACIDLIEKPM---GIFSILEEECMFPKATDLTFKTKLFDNHfGKSVHFQKPKP 464
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  572 LRDK--ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEIqniqkvyffdsyavapqgpvemd 649
Cdd:cd14929    465 DKKKfeAHFELVHYAGVVPYNISGWLEKNKDLLNETVVAVFQKSSNRLLASLFENYI----------------------- 521
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  650 rivgldqvSGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNG 729
Cdd:cd14929    522 --------STDSAIQFGEKKRKKGASFQTVASLHKENLNKLMTNLKSTAPHFVRCINPNVNKIPGVLDPYLVLQQLRCNG 593
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542  730 VLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKG-FMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14929    594 VLEGIRICREGFPNRLLYADFKQRYCILNPRTFPKSkFVSSRKAAEELLGSLEIDHTQYRFGITKVFFK 662
MYSc_Myh7 cd14917
class II myosin heavy chain 7, motor domain; Myosin motor domain of beta (or slow) type I ...
94-797 0e+00

class II myosin heavy chain 7, motor domain; Myosin motor domain of beta (or slow) type I cardiac muscle myosin heavy chain 7 (also called CMH1, MPD1, and CMD1S). Muscle myosin is a hexameric protein containing 2 heavy chain subunits, 2 alkali light chain subunits, and 2 regulatory light chain subunits. It is expressed predominantly in normal human ventrical and in skeletal muscle tissues rich in slow-twitch type I muscle fibers. Changes in the relative abundance of this protein and the alpha (or fast) heavy subunit of cardiac myosin correlate with the contractile velocity of cardiac muscle. Its expression is also altered during thyroid hormone depletion and hemodynamic overloading. Mutations in this gene are associated with familial hypertrophic cardiomyopathy, myosin storage myopathy, dilated cardiomyopathy, and Laing early-onset distal myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276881 [Multi-domain]  Cd Length: 668  Bit Score: 702.24  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd14917      2 AVLYNLKERYASWMIYTYSGLFCVTVNPYKWLPVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVAS-SHKARKDHNippeypteAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14917     82 SGAGKTVNTKRVIQYFAVIAAiGDRSKKDQT--------PGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIH 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLL--EPFNqYRFLSNGYLPIPGQQDKEIFH 330
Cdd:cd14917    154 FGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLItnNPYD-YAFISQGETTVASIDDAEELM 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  331 ETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGMNVTEFTRAILTPRIKVGRD 409
Cdd:cd14917    233 ATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKQKQREEQAE-PDGTeEADKSAYLMGLNSADLLKGLCHPRVKVGNE 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  410 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQL 489
Cdd:cd14917    312 YVTKGQNVQQVIYATGALAKAVYEKMFNWMVTRINATLE-TKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQF 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  490 FNHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKV-SQEQGTHPKFQK 568
Cdd:cd14917    391 FNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEKPM---GIMSILEEECMFPKATDMTFKAKLfDNHLGKSNNFQK 467
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  569 PRQLRDK--ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELwkdeiqniqkvyfFDSYAVApQGPV 646
Cdd:cd14917    468 PRNIKGKpeAHFSLIHYAGTVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSNL-------------FANYAGA-DAPI 533
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  647 EmdrivgldqvSGMGdlafgasyKTKKG-MFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQL 725
Cdd:cd14917    534 E----------KGKG--------KAKKGsSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQL 595
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1033370542  726 RCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKG-FMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14917    596 RCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGqFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFK 668
MYSc_Myh8 cd14918
class II myosin heavy chain 8, motor domain; Myosin motor domain of perinatal skeletal muscle ...
95-797 0e+00

class II myosin heavy chain 8, motor domain; Myosin motor domain of perinatal skeletal muscle myosin heavy chain 8 (also called MyHC-peri, MyHC-pn). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. A mutation in this gene results in trismus-pseudocamptodactyly syndrome. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276882 [Multi-domain]  Cd Length: 668  Bit Score: 685.70  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   95 VLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGES 174
Cdd:cd14918      3 VLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGES 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  175 GAGKTENTKKVIQYLAHVASSHKARKDHnippeypTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD 254
Cdd:cd14918     83 GAGKTVNTKRVIQYFATIAVTGEKKKEE-------SGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFG 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  255 VAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLL--EPFNqYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd14918    156 TTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQITSNKKPDLIEMLLIttNPYD-YAFVSQGEITVPSIDDQEELMAT 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGMNVTEFTRAILTPRIKVGRDYV 411
Cdd:cd14918    235 DSAIDILGFTPEEKVSIYKLTGAVMHYGNMKFKQKQREEQAE-PDGTeVADKAAYLQSLNSADLLKALCYPRVKVGNEYV 313
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  412 QKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFN 491
Cdd:cd14918    314 TKGQTVQQVYNAVGALAKAVYEKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFN 392
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  492 HTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKV-SQEQGTHPKFQKPR 570
Cdd:cd14918    393 HHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEKPL---GIFSILEEECMFPKATDTSFKNKLyDQHLGKSANFQKPK 469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  571 QLRDKAD--FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELwkdeiqniqkvyfFDSYAvapqgpvem 648
Cdd:cd14918    470 VVKGKAEahFSLIHYAGTVDYNITGWLDKNKDPLNDTVVGLYQKSAMKTLASL-------------FSTYA--------- 527
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  649 drivgldqvSGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCN 728
Cdd:cd14918    528 ---------SAEADSGAKKGAKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCN 598
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  729 GVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKG-FMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14918    599 GVLEGIRICRKGFPSRILYGDFKQRYKVLNASAIPEGqFIDSKKASEKLLASIDIDHTQYKFGHTKVFFK 668
MYSc_Myh6 cd14916
class II myosin heavy chain 6, motor domain; Myosin motor domain of alpha (or fast) cardiac ...
94-797 0e+00

class II myosin heavy chain 6, motor domain; Myosin motor domain of alpha (or fast) cardiac muscle myosin heavy chain 6. Cardiac muscle myosin is a hexamer consisting of two heavy chain subunits, two light chain subunits, and two regulatory subunits. This gene encodes the alpha heavy chain subunit of cardiac myosin. Mutations in this gene cause familial hypertrophic cardiomyopathy and atrial septal defect. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276880 [Multi-domain]  Cd Length: 670  Bit Score: 684.48  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd14916      2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVAS-SHKARKDHnippeypTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14916     82 SGAGKTVNTKRVIQYFASIAAiGDRSKKEN-------PNANKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIH 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLL--EPFNqYRFLSNGYLPIPGQQDKEIFH 330
Cdd:cd14916    155 FGATGKLASADIETYLLEKSRVIFQLKAERNYHIFYQILSNKKPELLDMLLVtnNPYD-YAFVSQGEVSVASIDDSEELL 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  331 ETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASmPDNTA-AQKLCHLLGMNVTEFTRAILTPRIKVGRD 409
Cdd:cd14916    234 ATDSAFDVLGFTAEEKAGVYKLTGAIMHYGNMKFKQKQREEQAE-PDGTEdADKSAYLMGLNSADLLKGLCHPRVKVGNE 312
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  410 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQL 489
Cdd:cd14916    313 YVTKGQSVQQVYYSIGALAKSVYEKMFNWMVTRINATLE-TKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQF 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  490 FNHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKVSQEQ-GTHPKFQK 568
Cdd:cd14916    392 FNHHMFVLEQEEYKKEGIEWEFIDFGMDLQACIDLIEKPM---GIMSILEEECMFPKASDMTFKAKLYDNHlGKSNNFQK 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  569 PRQLRDK--ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELwkdeiqniqkvyfFDSYAVApqgpv 646
Cdd:cd14916    469 PRNVKGKqeAHFSLVHYAGTVDYNILGWLEKNKDPLNETVVGLYQKSSLKLMATL-------------FSTYASA----- 530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  647 emdrivgldqvsGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLR 726
Cdd:cd14916    531 ------------DTGDSGKGKGGKKKGSSFQTVSALHRENLNKLMTNLKTTHPHFVRCIIPNERKAPGVMDNPLVMHQLR 598
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1033370542  727 CNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKG-FMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14916    599 CNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGqFIDSRKGAEKLLGSLDIDHNQYKFGHTKVFFK 670
MYSc_Myh2_mammals cd14912
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ...
94-797 0e+00

class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in mammals. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276877 [Multi-domain]  Cd Length: 673  Bit Score: 679.15  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd14912      2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVASSHKARKDhnippEYPTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd14912     82 SGAGKTVNTKRVIQYFATIAVTGEKKKE-----EITSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHF 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLL--EPFNqYRFLSNGYLPIPGQQDKEIFHE 331
Cdd:cd14912    157 GTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQITSNKKPELIEMLLIttNPYD-YPFVSQGEISVASIDDQEELMA 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGMNVTEFTRAILTPRIKVGRDY 410
Cdd:cd14912    236 TDSAIDILGFTNEEKVSIYKLTGAVMHYGNLKFKQKQREEQAE-PDGTeVADKAAYLQSLNSADLLKALCYPRVKVGNEY 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  411 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLF 490
Cdd:cd14912    315 VTKGQTVEQVTNAVGALAKAVYEKMFLWMVARINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFF 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  491 NHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKV-SQEQGTHPKFQKP 569
Cdd:cd14912    394 NHHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLyEQHLGKSANFQKP 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  570 RQLRDKAD--FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWkdeiqniqkvyffdSYAVAPQGpve 647
Cdd:cd14912    471 KVVKGKAEahFSLIHYAGVVDYNITGWLDKNKDPLNETVVGLYQKSAMKTLAYLF--------------SGAQTAEG--- 533
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  648 mdrivgldQVSGMGDLAFGasyKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRC 727
Cdd:cd14912    534 --------ASAGGGAKKGG---KKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRC 602
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542  728 NGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKG-FMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14912    603 NGVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGqFIDSKKASEKLLASIDIDHTQYKFGHTKVFFK 673
MYSc_Myh13 cd14923
class II myosin heavy chain 13, motor domain; Myosin motor domain of skeletal muscle myosin ...
94-797 0e+00

class II myosin heavy chain 13, motor domain; Myosin motor domain of skeletal muscle myosin heavy chain 13 (also called MyHC-eo) in mammals, chicken, and green anole. Myh13 is a myosin whose expression is restricted primarily to the extrinsic eye muscles which are specialized for function in eye movement. Class II myosins, also called conventional myosins, are the myosin type responsible for producing muscle contraction in muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276887 [Multi-domain]  Cd Length: 671  Bit Score: 677.56  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd14923      2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGKKRQEAPPHIFSISDNAYQFMLTDRDNQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVASSHKARKDHNippeyPTEAkQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd14923     82 SGAGKTVNTKRVIQYFATIAVTGDKKKEQQ-----PGKM-QGTLEDQIIQANPLLEAFGNAKTVRNDNSSRFGKFIRIHF 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLE--PFNqYRFLSNGYLPIPGQQDKEIFHE 331
Cdd:cd14923    156 GATGKLASADIETYLLEKSRVTFQLSSERSYHIFYQIMSNKKPELIDLLLIStnPFD-FPFVSQGEVTVASIDDSEELLA 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGMNVTEFTRAILTPRIKVGRDY 410
Cdd:cd14923    235 TDNAIDILGFSSEEKVGIYKLTGAVMHYGNMKFKQKQREEQAE-PDGTeVADKAGYLMGLNSAEMLKGLCCPRVKVGNEY 313
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  411 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLF 490
Cdd:cd14923    314 VTKGQNVQQVTNSVGALAKAVYEKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFF 392
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  491 NHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKV-SQEQGTHPKFQKP 569
Cdd:cd14923    393 NHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLyDQHLGKSNNFQKP 469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  570 RQLRDKAD--FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAelwkdeiqniqkvYFFDSYAVAPQGpve 647
Cdd:cd14923    470 KPAKGKAEahFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSLKLLS-------------FLFSNYAGAEAG--- 533
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  648 mdrivgldqvSGMGDLAFGasyKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRC 727
Cdd:cd14923    534 ----------DSGGSKKGG---KKKGSSFQTVSAVFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGVMDHYLVMHQLRC 600
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542  728 NGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKG-FMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14923    601 NGVLEGIRICRKGFPSRILYADFKQRYRILNASAIPEGqFIDSKNASEKLLNSIDVDREQYRFGHTKVFFK 671
MYSc_Myh1_mammals cd14910
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle ...
94-797 0e+00

class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle myosin heavy chain 1 (also called MYHSA1, MYHa, MyHC-2X/D, MGC133384) in mammals. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276875 [Multi-domain]  Cd Length: 671  Bit Score: 676.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd14910      2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVASSHKARKDhnippEYPTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd14910     82 SGAGKTVNTKRVIQYFATIAVTGEKKKE-----EATSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHF 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLL--EPFNqYRFLSNGYLPIPGQQDKEIFHE 331
Cdd:cd14910    157 GTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPDLIEMLLIttNPYD-YAFVSQGEITVPSIDDQEELMA 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGMNVTEFTRAILTPRIKVGRDY 410
Cdd:cd14910    236 TDSAIEILGFTSDERVSIYKLTGAVMHYGNMKFKQKQREEQAE-PDGTeVADKAAYLQNLNSADLLKALCYPRVKVGNEY 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  411 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLF 490
Cdd:cd14910    315 VTKGQTVQQVYNAVGALAKAVYDKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFF 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  491 NHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKV-SQEQGTHPKFQKP 569
Cdd:cd14910    394 NHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLyEQHLGKSNNFQKP 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  570 RQLRDK--ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWkdeiqniqkvyffdsyavapQGPVE 647
Cdd:cd14910    471 KPAKGKveAHFSLIHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSMKTLALLF--------------------SGAAA 530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  648 MDRIVGLDQVSGmgdlafgasyKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRC 727
Cdd:cd14910    531 AEAEEGGGKKGG----------KKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRC 600
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542  728 NGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKG-FMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14910    601 NGVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGqFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFK 671
MYSc_Myh4 cd14915
class II myosin heavy chain 4, motor domain; Myosin motor domain of skeletal muscle myosin ...
94-797 0e+00

class II myosin heavy chain 4, motor domain; Myosin motor domain of skeletal muscle myosin heavy chain 4 (also called MYH2B, MyHC-2B, MyHC-IIb). Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276879 [Multi-domain]  Cd Length: 671  Bit Score: 668.36  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd14915      2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVASSHKARKDhnippEYPTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd14915     82 SGAGKTVNTKRVIQYFATIAVTGEKKKE-----EAASGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHF 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKgELLLEPFNQYRF--LSNGYLPIPGQQDKEIFHE 331
Cdd:cd14915    157 GATGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPELI-EMLLITTNPYDFafVSQGEITVPSIDDQEELMA 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGMNVTEFTRAILTPRIKVGRDY 410
Cdd:cd14915    236 TDSAVDILGFSADEKVAIYKLTGAVMHYGNMKFKQKQREEQAE-PDGTeVADKAAYLTSLNSADLLKALCYPRVKVGNEY 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  411 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLF 490
Cdd:cd14915    315 VTKGQTVQQVYNSVGALAKAIYEKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFF 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  491 NHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKV-SQEQGTHPKFQKP 569
Cdd:cd14915    394 NHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLyEQHLGKSNNFQKP 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  570 RQLRDKAD--FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAelwkdeiqniqkvYFFDSYAVApqgpve 647
Cdd:cd14915    471 KPAKGKAEahFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSGMKTLA-------------FLFSGGQTA------ 531
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  648 mdrivgldQVSGMGDLAFGasyKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRC 727
Cdd:cd14915    532 --------EAEGGGGKKGG---KKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGAMEHELVLHQLRC 600
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542  728 NGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKG-FMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14915    601 NGVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGqFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFK 671
MYSc_Myo22 cd14883
class XXII myosin, motor domain; These myosins possess an extended neck with multiple IQ ...
94-797 0e+00

class XXII myosin, motor domain; These myosins possess an extended neck with multiple IQ motifs such as found in class V, VIII, XI, and XIII myosins. These myosins are defined by two tandem MyTH4 and FERM domains. The apicomplexan, but not diatom myosins contain 4-6 WD40 repeats near the end of the C-terminal tail which suggests a possible function of these myosins in signal transduction and transcriptional regulation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276849 [Multi-domain]  Cd Length: 661  Bit Score: 645.53  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd14883      2 GINTNLKVRYKKDLIYTYTGSILVAVNPYKELPIYTQDIVKQYFGKRMGALPPHIFALAEAAYTNMQEDGKNQSVIISGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVASSHKarkdhnippeypteakqgELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd14883     82 SGAGKTETTKLILQYLCAVTNNHS------------------WVEQQILEANTILEAFGNAKTVRNDNSSRFGKFIEVCF 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGE--HMKGELLLEPFNQYRFLS-NGYLPIPGQQDKEIFH 330
Cdd:cd14883    144 DASGHIKGAIIQDYLLEQSRITFQAPGERNYHVFYQLLAGAKHskELKEKLKLGEPEDYHYLNqSGCIRIDNINDKKDFD 223
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  331 ETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRK-ERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRD 409
Cdd:cd14883    224 HLRLAMNVLGIPEEMQEGIFSVLSAILHLGNLTFEDiDGETGALTVEDKEILKIVAKLLGVDPDKLKKALTIRQINVRGN 303
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  410 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGaSFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQL 489
Cdd:cd14883    304 VTEIPLKVQEARDNRDAMAKALYSRTFAWLVNHINSCTNPGQKNS-RFIGVLDIFGFENFKVNSFEQLCINYTNEKLHKF 382
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  490 FNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKP 569
Cdd:cd14883    383 FNHYVFKLEQEEYEKEGINWSHIVFT-DNQECLDLIEKP--PLGILKLLDEECRFPKGTDLTYLEKLHAAHEKHPYYEKP 459
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  570 RQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKdeiqniqkvyffdsyavapqgPVEMD 649
Cdd:cd14883    460 DRRRWKTEFGVKHYAGEVTYTVQGFLDKNKDTQQDDLFDLMSRSKNKFVKELFT---------------------YPDLL 518
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  650 RIVGLDQVSGmGDLAFGASYKTKKgmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNG 729
Cdd:cd14883    519 ALTGLSISLG-GDTTSRGTSKGKP----TVGDTFKHQLQSLVDVLSATQPWYVRCIKPNSLKEPNVFDDELVLAQLRYAG 593
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542  730 VLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14883    594 MLEIIRIRKEGFPIHLTFKEFVDRYLCLDPRARSADHKETCGAVRALMGLGGLPEDEWQVGKTKVFLR 661
MYSc_Myo1 cd01378
class I myosin, motor domain; Myosin I generates movement at the leading edge in cell motility, ...
94-797 0e+00

class I myosin, motor domain; Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. There are 5 myosin subclasses with subclasses c/h, d/g, and a/b have an IQ domain and a TH1 domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276829  Cd Length: 652  Bit Score: 641.90  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd01378      2 AINENLKKRFENDEIYTYIGHVLISVNPFKDLGIYTDEVLESYRGKNRYEVPPHVFALADSAYRNMKSEKENQCVIISGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVASSHkarkdhnippeyptEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd01378     82 SGAGKTEASKRIMQYIAAVSGGS--------------ESEVERVKDMLLASNPLLEAFGNAKTLRNDNSSRFGKYMEIQF 147
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLE-PFNQYRFLSNGYLPIPGQQDKEIFHET 332
Cdd:cd01378    148 DFKGEPVGGHITNYLLEKSRVVGQIKGERNFHIFYQLLKGASQEYLQELGLQrPEQYYYYSKSGCFDVDGIDDAADFKEV 227
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFrKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVG---RD 409
Cdd:cd01378    228 LNAMKVIGFTEEEQDSIFRILAAILHLGNIQF-AEDEEGNAAISDTSVLDFVAYLLGVDPDQLEKALTHRTIETGgggRS 306
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  410 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQL 489
Cdd:cd01378    307 VYEVPLNVEQAAYARDALAKAIYSRLFDWIVERINKSLAAKSGGKKKVIGVLDIYGFEIFEKNSFEQFCINYVNEKLQQI 386
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  490 FnhTMFVL--EQEEYQREGIEWNFIDFgLDLQPCIDLIErpANPPGVLALLDEECWFP-KATDKSFVEKVSQEQGTHPKF 566
Cdd:cd01378    387 F--IELTLkaEQEEYVREGIEWTPIKY-FNNKIICDLIE--EKPPGIFAILDDACLTAgDATDQTFLQKLNQLFSNHPHF 461
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  567 QKP---RQLRDkADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWkdeiqniqkvyffdsyavaPQ 643
Cdd:cd01378    462 ECPsghFELRR-GEFRIKHYAGDVTYNVEGFLDKNKDLLFKDLKELMQSSSNPFLRSLF-------------------PE 521
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  644 GPVEMDrivgldqvsgmgdlafgasyktkKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLD 723
Cdd:cd01378    522 GVDLDS-----------------------KKRPPTAGTKFKNSANALVETLMKKQPSYIRCIKPNDNKSPGEFDEELVLH 578
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1033370542  724 QLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd01378    579 QVKYLGLLENVRVRRAGFAYRQTYEKFLERYKLLSPKTWPAWDGTWQGGVESILKDLNIPPEEYQMGKTKIFIR 652
MYSc_Myo8 cd01383
class VIII myosin, motor domain; These plant-specific type VIII myosins has been associated ...
94-797 0e+00

class VIII myosin, motor domain; These plant-specific type VIII myosins has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. It also contains IQ domains Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276834  Cd Length: 647  Bit Score: 636.28  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRgkKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd01383      2 SVLHNLEYRYSQDIIYTKAGPVLIAVNPFKDVPLYGNEFITAYR--QKLLDSPHVYAVADTAYREMMRDEINQSIIISGE 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVASSHKArkdhnippeypteakqgeLERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd01383     80 SGAGKTETAKIAMQYLAALGGGSSG------------------IENEILQTNPILEAFGNAKTLRNDNSSRFGKLIDIHF 141
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLS-NGYLPIPGQQDKEIFHET 332
Cdd:cd01383    142 DAAGKICGAKIQTYLLEKSRVVQLANGERSYHIFYQLCAGASPALREKLNLKSASEYKYLNqSNCLTIDGVDDAKKFHEL 221
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd01383    222 KEALDTVGISKEDQEHIFQMLAAVLWLGNISFQVIDNENHVEVVADEAVSTAASLLGCNANDLMLALSTRKIQAGGDKIV 301
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd01383    302 KKLTLQQAIDARDALAKAIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFQKNSFEQLCINYANERLQQHFNR 381
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPrql 572
Cdd:cd01383    382 HLFKLEQEEYELDGIDWTKVDF-EDNQECLDLIEK--KPLGLISLLDEESNFPKATDLTFANKLKQHLKSNSCFKGE--- 455
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEIQNIQKVyffdsyavapqgpvemdriv 652
Cdd:cd01383    456 RGGA-FTIRHYAGEVTYDTSGFLEKNRDLLHSDLIQLLSSCSCQLPQLFASKMLDASRKA-------------------- 514
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  653 gldqvsgMGDLAFGASYKTKkgmfRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLE 732
Cdd:cd01383    515 -------LPLTKASGSDSQK----QSVATKFKGQLFKLMQRLENTTPHFIRCIKPNNKQLPGVFDQDLVLQQLRCCGVLE 583
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  733 GIRICRQGFPNRIIFQEFRQRYEILTPNAIpKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd01383    584 VVRISRSGYPTRMTHQEFARRYGFLLPEDV-SASQDPLSTSVAILQQFNILPEMYQVGYTKLFFR 647
MYSc_Myo11 cd01384
class XI myosin, motor domain; These plant-specific type XI myosin are involved in organelle ...
93-797 0e+00

class XI myosin, motor domain; These plant-specific type XI myosin are involved in organelle transport. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle.


Pssm-ID: 276835  Cd Length: 647  Bit Score: 612.37  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCT 171
Cdd:cd01384      1 PGVLHNLKVRYELDEIYTYTGNILIAVNPFKRLPhLYDAHMMEQYKGAPLGELSPHVFAVADAAYRAMINEGKSQSILVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  172 GESGAGKTENTKKVIQYLAHVASshkarkdhnippeyPTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd01384     81 GESGAGKTETTKMLMQYLAYMGG--------------RAVTEGRSVEQQVLESNPLLEAFGNAKTVRNNNSSRFGKFVEI 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFL--SNGYlPIPGQQDKEIF 329
Cdd:cd01384    147 QFDDAGRISGAAIRTYLLERSRVVQVSDPERNYHCFYQLCAGAPPEDREKYKLKDPKQFHYLnqSKCF-ELDGVDDAEEY 225
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  330 HETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKL---CHLLGMNVTEFTRAiLTPRIKV 406
Cdd:cd01384    226 RATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFSKGEEDDSSVPKDEKSEFHLkaaAELLMCDEKALEDA-LCKRVIV 304
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  407 GRD-YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQgASFIGILDIAGFEIFQLNSFEQLCINYTNEK 485
Cdd:cd01384    305 TPDgIITKPLDPDAATLSRDALAKTIYSRLFDWLVDKINRSIGQDPNS-KRLIGVLDIYGFESFKTNSFEQFCINLANEK 383
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  486 LQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPK 565
Cdd:cd01384    384 LQQHFNQHVFKMEQEEYTKEEIDWSYIEF-VDNQDVLDLIEK--KPGGIIALLDEACMFPRSTHETFAQKLYQTLKDHKR 460
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  566 FQKPRqlRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWkdeiqniqkvyffdsyavaPQGP 645
Cdd:cd01384    461 FSKPK--LSRTDFTIDHYAGDVTYQTDLFLDKNKDYVVAEHQALLNASKCPFVAGLF-------------------PPLP 519
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  646 VEmdrivgldqvsgmgdlafGASYKTKkgmFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQL 725
Cdd:cd01384    520 RE------------------GTSSSSK---FSSIGSRFKQQLQELMETLNTTEPHYIRCIKPNNLLKPGIFENANVLQQL 578
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1033370542  726 RCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAiPKGFMDGKQACERMIKALELDPnlFRIGQSKIFFR 797
Cdd:cd01384    579 RCGGVLEAVRISCAGYPTRKPFEEFLDRFGLLAPEV-LKGSDDEKAACKKILEKAGLKG--YQIGKTKVFLR 647
MYSc_Myo7 cd01381
class VII myosin, motor domain; These monomeric myosins have been associated with functions in ...
93-797 0e+00

class VII myosin, motor domain; These monomeric myosins have been associated with functions in sensory systems such as vision and hearing. Mammalian myosin VII has a tail with 2 MyTH4 domains, 2 FERM domains, and a SH3 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276832  Cd Length: 648  Bit Score: 603.48  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd01381      1 AGILRNLLIRYREKLIYTYTGSILVAVNPYQILPIYTAEQIRLYRNKKIGELPPHIFAIADNAYTNMKRNKRDQCVVISG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKArkdhnippeypteakqgeLERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd01381     81 ESGAGKTESTKLILQYLAAISGQHSW------------------IEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 142
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNG-YLPIPGQQDKEIFHE 331
Cdd:cd01381    143 FNKNGVIEGAKIEQYLLEKSRIVSQAPDERNYHIFYCMLAGLSAEEKKKLELGDASDYYYLTQGnCLTCEGRDDAAEFAD 222
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRK--ERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRD 409
Cdd:cd01381    223 IRSAMKVLMFTDEEIWDIFKLLAAILHLGNIKFEAtvVDNLDASEVRDPPNLERAAKLLEVPKQDLVDALTTRTIFTRGE 302
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  410 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGAS--FIGILDIAGFEIFQLNSFEQLCINYTNEKLQ 487
Cdd:cd01381    303 TVVSPLSAEQALDVRDAFVKGIYGRLFIWIVNKINSAIYKPRGTDSSrtSIGVLDIFGFENFEVNSFEQLCINFANENLQ 382
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  488 QLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLI-ERPANppgVLALLDEECWFPKATDKSFVEKVSQEQGTHPKF 566
Cdd:cd01381    383 QFFVRHIFKLEQEEYDKEGINWQHIEF-VDNQDVLDLIaLKPMN---IMSLIDEESKFPKGTDQTMLEKLHSTHGNNKNY 458
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  567 QKPRQLRDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELwkdeiqniqkvyfFDSyavapqgpv 646
Cdd:cd01381    459 LKPKSDLNTS-FGINHFAGVVFYDTRGFLEKNRDTFSADLLQLVQSSKNKFLKQL-------------FNE--------- 515
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  647 emdrivgldqvsgmgDLAFGASYKTKKgmfRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLR 726
Cdd:cd01381    516 ---------------DISMGSETRKKS---PTLSSQFRKSLDQLMKTLSACQPFFVRCIKPNEYKKPMLFDRELCVRQLR 577
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542  727 CNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd01381    578 YSGMMETIRIRKAGYPIRHTFEEFVERYRVLVPGIPPAHKTDCRAATRKICCAVLGGDADYQLGKTKIFLK 648
MYSc_Myo6 cd01382
class VI myosin, motor domain; Myosin VI is a monomeric myosin, which moves towards the ...
93-797 0e+00

class VI myosin, motor domain; Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins which moves towards the plus-end of actin filaments. It is thought that myosin VI, unlike plus-end directed myosins, does not use a pure lever arm mechanism, but instead steps with a mechanism analogous to the kinesin neck-linker uncoupling model. It has been implicated in a myriad of functions including: the transport of cytoplasmic organelles, maintenance of normal Golgi morphology, endocytosis, secretion, cell migration, border cell migration during development, and in cancer metastasis playing roles in deafness and retinal development among others. While how this is accomplished is largely unknown there are several interacting proteins that have been identified such as disabled homolog 2 (DAB2), GIPC1, synapse-associated protein 97 (SAP97; also known as DLG1) and optineurin, which have been found to target myosin VI to different cellular compartments. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276833  Cd Length: 649  Bit Score: 571.50  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCT 171
Cdd:cd01382      1 ATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPkLYSSETIKSYQGKSLGTLPPHVFAIADKAYRDMKVLKQSQSIIVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  172 GESGAGKTENTKKVIQYLAHVASSHkarkdhnippeypteakQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd01382     81 GESGAGKTESTKYILRYLTESWGSG-----------------AGPIEQRILEANPLLEAFGNAKTVRNNNSSRFGKFVEI 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFnqyrflsngylpipgQQDKEIFHE 331
Cdd:cd01382    144 HFNEKSSVVGGFVSHYLLEKSRICVQSKEERNYHIFYRLCAGAPEDLREKLLKDPL---------------LDDVGDFIR 208
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNT-------DQASMPDNTAAQKlchLLGMNVTEF-----TRAI 399
Cdd:cd01382    209 MDKAMKKIGLSDEEKLDIFRVVAAVLHLGNIEFEENGSDsgggcnvKPKSEQSLEYAAE---LLGLDQDELrvsltTRVM 285
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  400 LTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKrqGASFIGILDIAGFEIFQLNSFEQLCI 479
Cdd:cd01382    286 QTTRGGAKGTVIKVPLKVEEANNARDALAKAIYSKLFDHIVNRINQCIPFET--SSYFIGVLDIAGFEYFEVNSFEQFCI 363
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  480 NYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLALLDEECWFPKATDKSFVEKVSQE 559
Cdd:cd01382    364 NYCNEKLQQFFNERILKEEQELYEKEGLGVKEVEY-VDNQDCIDLIEAKLV--GILDLLDEESKLPKPSDQHFTSAVHQK 440
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  560 QGTHPKFQKPRQ--------LRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEIQNiqk 631
Cdd:cd01382    441 HKNHFRLSIPRKsklkihrnLRDDEGFLIRHFAGAVCYETAQFIEKNNDALHASLESLICESKDKFIRSLFESSTNN--- 517
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  632 vyffdsyavapqgpvemdrivgldqvsgmgdlafGASYKTKKG--MFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNH 709
Cdd:cd01382    518 ----------------------------------NKDSKQKAGklSFISVGNKFKTQLNLLMDKLRSTGTSFIRCIKPNL 563
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  710 EKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKgfMDGKQACERMIKALELDPNLFRI 789
Cdd:cd01382    564 KMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRTSFHDLYNMYKKYLPPKLAR--LDPRLFCKALFKALGLNENDFKF 641

                   ....*...
gi 1033370542  790 GQSKIFFR 797
Cdd:cd01382    642 GLTKVFFR 649
MYSc_Myo4 cd14872
class IV myosin, motor domain; These myosins all possess a WW domain either N-terminal or ...
93-797 0e+00

class IV myosin, motor domain; These myosins all possess a WW domain either N-terminal or C-terminal to their motor domain and a tail with a MyTH4 domain followed by a SH3 domain in some instances. The monomeric Acanthamoebas were the first identified members of this group and have been joined by Stramenopiles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276839  Cd Length: 644  Bit Score: 563.63  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14872      1 AMIVHNLRKRFKNDQIYTNVGTILISVNPFKRLPLYTPTVMDQYMHKGPKEMPPHTYNIADDAYRAMIVDAMNQSILISG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASShkarkdhnippeypteakQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14872     81 ESGAGKTEATKQCLSFFAEVAGS------------------TNGVEQRVLLANPILEAFGNAKTLRNNNSSRFGKWVEIH 142
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPfnQYRFLS-NGYLPIPGQQDKEIFHE 331
Cdd:cd14872    143 FDNRGRICGASTENYLLEKSRVVYQIKGERNFHIFYQLLASPDPASRGGWGSSA--AYGYLSlSGCIEVEGVDDVADFEE 220
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCH---LLGMNVTEFTRAILTPRIKV-G 407
Cdd:cd14872    221 VVLAMEQLGFDDADINNVMSLIAAILKLGNIEFASGGGKSLVSGSTVANRDVLKEvatLLGVDAATLEEALTSRLMEIkG 300
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  408 RDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQ 487
Cdd:cd14872    301 CDPTRIPLTPAQATDACDALAKAAYSRLFDWLVKKINESMRPQKGAKTTFIGVLDIFGFEIFEKNSFEQLCINFTNEKLQ 380
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  488 QLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQ 567
Cdd:cd14872    381 QHFNQYTFKLEEALYQSEGVKFEHIDF-IDNQPVLDLIEK--KQPGLMLALDDQVKIPKGSDATFMIAANQTHAAKSTFV 457
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  568 KPRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKdeiqniqkvyffdsyavapqgPVE 647
Cdd:cd14872    458 YAEVRTSRTEFIVKHYAGDVTYDITGFLEKNKDTLQKDLYVLLSSSKNKLIAVLFP---------------------PSE 516
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  648 MDRivgldqvsgmgdlafgasyKTKKGmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRC 727
Cdd:cd14872    517 GDQ-------------------KTSKV---TLGGQFRKQLSALMTALNATEPHYIRCVKPNQEKRARLFDGFMSLEQLRY 574
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542  728 NGVLEGIRICRQGFPNRIIFQEFRQRYEILtPNAIPKGFM-DGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14872    575 AGVFEAVKIRKTGYPFRYSHERFLKRYRFL-VKTIAKRVGpDDRQRCDLLLKSLKQDFSKVQVGKTRVLYR 644
MYSc_Myo29 cd14890
class XXIX myosin, motor domain; Class XXIX myosins are comprised of Stramenopiles and have ...
93-797 7.46e-178

class XXIX myosin, motor domain; Class XXIX myosins are comprised of Stramenopiles and have very long tail domains consisting of three IQ motifs, short coiled-coil regions, up to 18 CBS domains, a PB1 domain, and a carboxy-terminal transmembrane domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276855 [Multi-domain]  Cd Length: 662  Bit Score: 556.31  E-value: 7.46e-178
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQ----DREDQS 167
Cdd:cd14890      1 ASLLHTLRLRYERDEIYTYVGPILISINPYKSIPdLYSEERMLLYHGTTAGELPPHVFAIADHAYTQLIQsgvlDPSNQS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  168 ILCTGESGAGKTENTKKVIQYLAHVASSHKARKDHNIP-PEYPTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFG 246
Cdd:cd14890     81 IIISGESGAGKTEATKIIMQYLARITSGFAQGASGEGEaASEAIEQTLGSLEDRVLSSNPLLESFGNAKTLRNDNSSRFG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  247 KFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDK 326
Cdd:cd14890    161 KFIEIQFDHHGKIVGAEISNFLLEKTRIVTQNDGERNYHIFYQLLAGADEALRERLKLQTPVEYFYLRGECSSIPSCDDA 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  327 EIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASmpDNTAAQKLCH---LLGMNVTEFTRAILTPR 403
Cdd:cd14890    241 KAFAETIRCLSTIGISEENQDAVFGLLAAVLHLGNVDFESENDTTVLE--DATTLQSLKLaaeLLGVNEDALEKALLTRQ 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  404 IKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQgASFIGILDIAGFEIFQLNSFEQLCINYTN 483
Cdd:cd14890    319 LFVGGKTIVQPQNVEQARDKRDALAKALYSSLFLWLVSELNRTISSPDDK-WGFIGVLDIYGFEKFEWNTFEQLCINYAN 397
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  484 EKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIE-RPANPPGVLALLDeECWFPKAT--DKSFVEKVSQEQ 560
Cdd:cd14890    398 EKLQRHFNQHMFEVEQVEYSNEGIDWQYITFN-DNQACLELIEgKVNGKPGIFITLD-DCWRFKGEeaNKKFVSQLHASF 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  561 GT-------------HPKFQKPRQLRDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSAdkftaelwkdeiQ 627
Cdd:cd14890    476 GRksgsggtrrgssqHPHFVHPKFDADKQ-FGIKHYAGDVIYDASGFNEKNNETLNAEMKELIKQSR------------R 542
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  628 NIQKVyffdsyavapqgpvemdrivgldqvsgmgdlafgasyktkkgmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIP 707
Cdd:cd14890    543 SIREV---------------------------------------------SVGAQFRTQLQELMAKISLTNPRYVRCIKP 577
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  708 NHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAipkgfMDGKQACERMIKALELDPNLF 787
Cdd:cd14890    578 NETKAPGKFDGLDCLRQLKYSGMMEAIQIRQQGFALREEHDSFFYDFQVLLPTA-----ENIEQLVAVLSKMLGLGKADW 652
                          730
                   ....*....|
gi 1033370542  788 RIGQSKIFFR 797
Cdd:cd14890    653 QIGSSKIFLK 662
MYSc_Myo15 cd01387
class XV mammal-like myosin, motor domain; The class XV myosins are monomeric. In vertebrates, ...
93-797 8.06e-168

class XV mammal-like myosin, motor domain; The class XV myosins are monomeric. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to the head domain are 2 MyTH4 domain, a FERM domain, and a SH3 domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276838 [Multi-domain]  Cd Length: 657  Bit Score: 528.94  E-value: 8.06e-168
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd01387      1 TTVLWNLKTRYERNLIYTYIGSILVSVNPYKMFDIYGLEQVQQYSGRALGELPPHLFAIANLAFAKMLDAKQNQCVVISG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASShkarkdhniPPEYPTEakqgelerQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd01387     81 ESGSGKTEATKLIMQYLAAVNQR---------RNNLVTE--------QILEATPLLEAFGNAKTVRNDNSSRFGKYLEVF 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDvAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNG-YLPIPGQQDKEIFHE 331
Cdd:cd01387    144 FE-GGVIVGAITSQYLLEKSRIVTQAKNERNYHVFYELLAGLPAQLRQKYGLQEAEKYFYLNQGgNCEIAGKSDADDFRR 222
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQ---ASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGR 408
Cdd:cd01387    223 LLAAMQVLGFSSEEQDSIFRILASVLHLGNVYFHKRQLRHGqegVSVGSDAEIQWVAHLLQISPEGLQKALTFKVTETRR 302
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  409 DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINrALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQ 488
Cdd:cd01387    303 ERIFTPLTIDQALDARDAIAKALYALLFSWLVTRVN-AIVYSGTQDTLSIAILDIFGFEDLSENSFEQLCINYANENLQY 381
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  489 LFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQK 568
Cdd:cd01387    382 YFNKHVFKLEQEEYIREQIDWTEIAF-ADNQPVINLISK--KPVGILHILDDECNFPQATDHSFLEKCHYHHALNELYSK 458
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  569 PRQlrDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEIQNIQKvyffdsyaVAPQGPvem 648
Cdd:cd01387    459 PRM--PLPEFTIKHYAGQVWYQVHGFLDKNRDQLRQDVLELLVSSRTRVVAHLFSSHRAQTDK--------APPRLG--- 525
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  649 drivgldqvsgmgdlafGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCN 728
Cdd:cd01387    526 -----------------KGRFVTMKPRTPTVAARFQDSLLQLLEKMERCNPWFVRCLKPNHKKEPMLFDMDVVMAQLRYS 588
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  729 GVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGfMDGKQACERMIKALELDP-NLFRIGQSKIFFR 797
Cdd:cd01387    589 GMLETIRIRKEGYPVRLPFQVFIDRYRCLVALKLPRP-APGDMCVSLLSRLCTVTPkDMYRLGATKVFLR 657
MYSc_Myo42 cd14903
class XLII myosin, motor domain; The class XLII myosins are comprised of Stramenopiles. Not ...
93-797 1.25e-165

class XLII myosin, motor domain; The class XLII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276868 [Multi-domain]  Cd Length: 658  Bit Score: 522.80  E-value: 1.25e-165
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCT 171
Cdd:cd14903      1 AAILYNVKKRFLRKLPYTYTGDICIAVNPYQWLPeLYTEEQHSKYLNKPKEELPPHVYATSVAAYNHMKRSGRNQSILVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  172 GESGAGKTENTKKVIQYLAHVASshkARKDHNIppeypteakqgeleRQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd14903     81 GESGAGKTETTKILMNHLATIAG---GLNDSTI--------------KKIIEVNPLLESFGNAKTVRNDNSSRFGKFTQL 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLvgAGEHMKGELLLEPFNQYRFL-SNGYLPIPGQQDKEIFH 330
Cdd:cd14903    144 QFDKNGTLVGAKCRTYLLEKTRVISHERPERNYHIFYQLL--ASPDVEERLFLDSANECAYTgANKTIKIEGMSDRKHFA 221
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  331 ETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASM--PDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGR 408
Cdd:cd14903    222 RTKEALSLIGVSEEKQEVLFEVLAGILHLGQLQIQSKPNDDEKSAiaPGDQGAVYATKLLGLSPEALEKALCSRTMRAAG 301
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  409 DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQgASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQ 488
Cdd:cd14903    302 DVYTVPLKKDQAEDCRDALAKAIYSNVFDWLVATINASLGNDAKM-ANHIGVLDIFGFEHFKHNSFEQFCINYANEKLQQ 380
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  489 LFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIErpaNPPGVLALLDEECWFPKATDKSFVEKVSqeqGTHPKFQK 568
Cdd:cd14903    381 KFTQDVFKTVQIEYEEEGIRWAHIDF-ADNQDVLAVIE---DRLGIISLLNDEVMRPKGNEESFVSKLS---SIHKDEQD 453
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  569 ----PRQlrDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKdeiqniQKVYFFDSYAVAPQG 644
Cdd:cd14903    454 viefPRT--SRTQFTIKHYAGPVTYESLGFLEKHKDALLPDLSDLMRGSSKPFLRMLFK------EKVESPAAASTSLAR 525
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  645 PvemdrivgldqvsgmgdlafGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQ 724
Cdd:cd14903    526 G--------------------ARRRRGGALTTTTVGTQFKDSLNELMTTIRSTNVHYVRCIKPNSIKSPTELDHLMVVSQ 585
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1033370542  725 LRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAiPKGFMDGKQACERMIKALELD-PNLFRIGQSKIFFR 797
Cdd:cd14903    586 LRCAGVIEAIRISRAAYPNRLLHEEFLDKFWLFLPEG-RNTDVPVAERCEALMKKLKLEsPEQYQMGLTRIYFQ 658
MYSc_Myo3 cd01379
class III myosin, motor domain; Myosin III has been shown to play a role in the vision process ...
94-797 2.82e-165

class III myosin, motor domain; Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. They are characterized by an N-terminal protein kinase domain and several IQ domains. Some members also contain WW, SH2, PH, and Y-phosphatase domains. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276830 [Multi-domain]  Cd Length: 633  Bit Score: 520.68  E-value: 2.82e-165
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd01379      2 TIVSQLQKRYSRDQIYTYIGDILIAVNPFQNLGIYTEEHSRLYRGAKRSDNPPHIFAVADAAYQAMIHQKKNQCIVISGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVAsshkarkdhnippeyptEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd01379     82 SGAGKTESANLLVQQLTVLG-----------------KANNRTLEEKILQVNPLMEAFGNARTVINDNSSRFGKYLEMKF 144
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMK-GELLLEPFNQYRFLSNGYLPIPGQQDKEI---- 328
Cdd:cd01379    145 TSTGAVTGARISEYLLEKSRVVHQAIGERNFHIFYYIYAGLAEDKKlAKYKLPENKPPRYLQNDGLTVQDIVNNSGnrek 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  329 FHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFR---KERNTDQASM-PDNTAAQKLCHLLGMNVTEFTRAiLTPRI 404
Cdd:cd01379    225 FEEIEQCFKVIGFTKEEVDSVYSILAAILHIGDIEFTeveSNHQTDKSSRiSNPEALNNVAKLLGIEADELQEA-LTSHS 303
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  405 KVGR-DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRAL--DRTKRQGASFIGILDIAGFEIFQLNSFEQLCINY 481
Cdd:cd01379    304 VVTRgETIIRNNTVEEATDARDAMAKALYGRLFSWIVNRINSLLkpDRSASDEPLSIGILDIFGFENFQKNSFEQLCINI 383
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  482 TNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCID-LIERPAnppGVLALLDEECWFPKATDKSFVEKVsqEQ 560
Cdd:cd01379    384 ANEQIQYYFNQHIFAWEQQEYLNEGIDVDLIEYE-DNRPLLDmFLQKPM---GLLALLDEESRFPKATDQTLVEKF--HN 457
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  561 GTHPKFQKpRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAelwkdeiqniQKVyffdsyav 640
Cdd:cd01379    458 NIKSKYYW-RPKSNALSFGIHHYAGKVLYDASGFLEKNRDTLPPDVVQLLRSSENPLVR----------QTV-------- 518
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  641 apqgpvemdrivgldqvsgmgdlafgASYktkkgmFRTvgqlykeSLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHL 720
Cdd:cd01379    519 --------------------------ATY------FRY-------SLMDLLSKMVVGQPHFVRCIKPNDSRQAGKFDREK 559
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542  721 VLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDgKQACERMIKALELDPnlFRIGQSKIFFR 797
Cdd:cd01379    560 VLKQLRYTGVLETTRIRRQGFSHRILFADFLKRYYFLAFKWNEEVVAN-RENCRLILERLKLDN--WALGKTKVFLK 633
MYSc_Myo36 cd14897
class XXXVI myosin, motor domain; This class of molluscan myosins contains a motor domain ...
93-797 1.06e-164

class XXXVI myosin, motor domain; This class of molluscan myosins contains a motor domain followed by a GlcAT-I (Beta1,3-glucuronyltransferase I) domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276862 [Multi-domain]  Cd Length: 635  Bit Score: 519.25  E-value: 1.06e-164
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKK-RHEMPPHIYAISEAAYRSMLQDREDQSILCT 171
Cdd:cd14897      1 NTIVQTLKSRYNKDKFYTYIGDILVAVNPCKPLPIFDKKHHEEYSNLSvRSQRPPHLFWIADQAYRRLLETGRNQCILVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  172 GESGAGKTENTKKVIQYLAHVASShkarkdhnippeypteaKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd14897     81 GESGAGKTESTKYMIKHLMKLSPS-----------------DDSDLLDKIVQINPLLEAFGNASTVMNDNSSRFGKFIEL 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKE---- 327
Cdd:cd14897    144 HFTENGQLLGAKIDDYLLEKSRVVHRGNGEKNFHIFYALFAGMSRDRLLYYFLEDPDCHRILRDDNRNRPVFNDSEeley 223
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  328 ---IFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRI 404
Cdd:cd14897    224 yrqMFHDLTNIMKLIGFSEEDISVIFTILAAILHLTNIVFIPDEDTDGVTVADEYPLHAVAKLLGIDEVELTEALISNVN 303
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  405 KVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRAL----DRTKRQGASFIGILDIAGFEIFQLNSFEQLCIN 480
Cdd:cd14897    304 TIRGERIQSWKSLRQANDSRDALAKDLYSRLFGWIVGQINRNLwpdkDFQIMTRGPSIGILDMSGFENFKINSFDQLCIN 383
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  481 YTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKSFVEKVSQEQ 560
Cdd:cd14897    384 LSNERLQQYFNDYVFPRERSEYEIEGIEWRDIEYH-DNDDVLELFFK--KPLGILPLLDEESTFPQSTDSSLVQKLNKYC 460
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  561 GTHPKFQKPrqLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELwkdeiqniqkvyfFDSYav 640
Cdd:cd14897    461 GESPRYVAS--PGNRVAFGIRHYAEQVTYDADGFLEKNRDNLSSDIVGCLLNSNNEFISDL-------------FTSY-- 523
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  641 apqgpvemdrivgldqvsgmgdlafgasyktkkgmfrtvgqlYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHL 720
Cdd:cd14897    524 ------------------------------------------FKRSLSDLMTKLNSADPLFVRCIKPNNFLRPNKFDDEL 561
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542  721 VLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAiPKGFMDGKQACERMIKALELDPnlFRIGQSKIFFR 797
Cdd:cd14897    562 VRRQLLCNGLMEIAKIRRDGYPIRIKYEDFVKRYKEICDFS-NKVRSDDLGKCQKILKTAGIKG--YQFGKTKVFLK 635
MYSc_Myo9 cd01385
class IX myosin, motor domain; Myosin IX is a processive single-headed motor, which might play ...
93-797 3.23e-164

class IX myosin, motor domain; Myosin IX is a processive single-headed motor, which might play a role in signalling. It has a N-terminal RA domain, an IQ domain, a C1_1 domain, and a RhoGAP domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276836 [Multi-domain]  Cd Length: 690  Bit Score: 520.01  E-value: 3.23e-164
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd01385      1 QTLLENLRARFKHGKIYTYVGSILIAVNPFKFLPIYNPKYVKMYQNRRLGKLPPHIFAIADVAYHAMLRKKKNQCIVISG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLahVASSHKArkdHNippeypteakqGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd01385     81 ESGSGKTESTNFLLHHL--TALSQKG---YG-----------SGVEQTILGAGPVLEAFGNAKTAHNNNSSRFGKFIQVN 144
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLS-NGYLPIPGQQDKEIFHE 331
Cdd:cd01385    145 YRENGMVRGAVVEKYLLEKSRIVSQEKNERNYHVFYYLLAGASEEERKELHLKQPEDYHYLNqSDCYTLEGEDEKYEFER 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKER-NTDQASMPDNTAAQKL-CHLLGMNVTEFTRAILTPRIKVGRD 409
Cdd:cd01385    225 LKQAMEMVGFLPETQRQIFSVLSAVLHLGNIEYKKKAyHRDESVTVGNPEVLDIiSELLRVKEETLLEALTTKKTVTVGE 304
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  410 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRAL----DRTKRQGASfIGILDIAGFEIFQLNSFEQLCINYTNEK 485
Cdd:cd01385    305 TLILPYKLPEAIATRDAMAKCLYSALFDWIVLRINHALlnkkDLEEAKGLS-IGVLDIFGFEDFGNNSFEQFCINYANEH 383
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  486 LQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPK 565
Cdd:cd01385    384 LQYYFNQHIFKLEQEEYKKEGISWHNIEY-TDNTGCLQLISK--KPTGLLCLLDEESNFPGATNQTLLAKFKQQHKDNKY 460
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  566 FQKPrQLRDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAEL----------WkdeiqNIQKVYFF 635
Cdd:cd01385    461 YEKP-QVMEPA-FIIAHYAGKVKYQIKDFREKNLDLMRPDIVAVLRSSSSAFVRELigidpvavfrW-----AVLRAFFR 533
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  636 DSYAVAPQGpveMDRIVGLDQVSGM----GDLAFGASYKTKKGMfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEK 711
Cdd:cd01385    534 AMAAFREAG---RRRAQRTAGHSLTlhdrTTKSLLHLHKKKKPP--SVSAQFQTSLSKLMETLGQAEPFFIRCIKSNAEK 608
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  712 RAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNaipkgfmdGKQACERMIKALE----LDPNLF 787
Cdd:cd01385    609 KPLRFDDELVLRQLRYTGMLETVRIRRSGYSVRYTFQEFITQFQVLLPK--------GLISSKEDIKDFLeklnLDRDNY 680
                          730
                   ....*....|
gi 1033370542  788 RIGQSKIFFR 797
Cdd:cd01385    681 QIGKTKVFLK 690
MYSc_Myo27 cd14888
class XXVII myosin, motor domain; Not much is known about this myosin class. The catalytic ...
93-759 4.23e-163

class XXVII myosin, motor domain; Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276853 [Multi-domain]  Cd Length: 667  Bit Score: 516.17  E-value: 4.23e-163
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRgKKRHEMPPHIYAISEAAYRSMLQDREDQSILCT 171
Cdd:cd14888      1 ASILHSLNLRFDIDEIYTFTGPILIAVNPFKTIPgLYSDEMLLKFI-QPSISKSPHVFSTASSAYQGMCNNKKSQTILIS 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  172 GESGAGKTENTKKVIQYLAHVASSHKARKDhnippeypteakqgELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd14888     80 GESGAGKTESTKYVMKFLACAGSEDIKKRS--------------LVEAQVLESNPLLEAFGNARTLRNDNSSRFGKFIEL 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFD---------VAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLP--- 319
Cdd:cd14888    146 QFSklkskrmsgDRGRLCGAKIQTYLLEKVRVCDQQEGERNYHIFYQLCAAAREAKNTGLSYEENDEKLAKGADAKPisi 225
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  320 ---------------------IPGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDN 378
Cdd:cd14888    226 dmssfephlkfryltksscheLPDVDDLEEFESTLYAMQTVGISPEEQNQIFSIVAAILYLGNILFENNEACSEGAVVSA 305
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  379 TAAQKL---CHLLGMNVTEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGA 455
Cdd:cd14888    306 SCTDDLekvASLLGVDAEDLLNALCYRTIKTAHEFYTKPLRVDEAEDVRDALARALYSCLFDKVVERTNESIGYSKDNSL 385
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  456 SFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVL 535
Cdd:cd14888    386 LFCGVLDIFGFECFQLNSFEQLCINFTNERLQQFFNNFVFKCEEKLYIEEGISWNPLDFP-DNQDCVDLLQ--EKPLGIF 462
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  536 ALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRQlrDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSAD 615
Cdd:cd14888    463 CMLDEECFVPGGKDQGLCNKLCQKHKGHKRFDVVKT--DPNSFVIVHFAGPVKYCSDGFLEKNKDQLSVDAQEVIKNSKN 540
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  616 KFTAELwkdeiqniqkvyfFDSYavapqgpvemdrivgldqvsgmgdLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLR 695
Cdd:cd14888    541 PFISNL-------------FSAY------------------------LRRGTDGNTKKKKFVTVSSEFRNQLDVLMETID 583
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1033370542  696 NTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTP 759
Cdd:cd14888    584 KTEPHFIRCIKPNSQNVPDLFDRISVNEQLKYGGVLQAVQVSRAGYPVRLSHAEFYNDYRILLN 647
MYSc_Myo40 cd14901
class XL myosin, motor domain; The class XL myosins are comprised of Stramenopiles. Not much ...
93-795 2.20e-161

class XL myosin, motor domain; The class XL myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276866 [Multi-domain]  Cd Length: 655  Bit Score: 511.26  E-value: 2.20e-161
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMY------RGKKRHEMPPHIYAISEAAYRSMLQDRE-- 164
Cdd:cd14901      1 PSILHVLRRRFAHGLIYTSTGAILVAINPFRRLPLYDDETKEAYyehgerRAAGERKLPPHVYAVADKAFRAMLFASRgq 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  165 --DQSILCTGESGAGKTENTKKVIQYLAHVaSSHKARKDHNippeypteAKQGELERQLLQANPILEAFGNAKTVKNDNS 242
Cdd:cd14901     81 kcDQSILVSGESGAGKTETTKIIMNYLASV-SSATTHGQNA--------TERENVRDRVLESNPILEAFGNARTNRNNNS 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  243 SRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFL--SNGYLPI 320
Cdd:cd14901    152 SRFGKFIRLGFASSGSLLGASISTYLLERVRLVSQAKGERNYHIFYELLRGASSDELHALGLTHVEEYKYLnsSQCYDRR 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  321 PGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVF-RKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAI 399
Cdd:cd14901    232 DGVDDSVQYAKTRHAMTTIGMSPDEQISVLQLVAAVLHLGNLCFvKKDGEGGTFSMSSLANVRAACDLLGLDMDVLEKTL 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  400 LTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGAS-FIGILDIAGFEIFQLNSFEQLC 478
Cdd:cd14901    312 CTREIRAGGEYITMPLSVEQALLTRDVVAKTLYAQLFDWLVDRINESIAYSESTGASrFIGIVDIFGFEIFATNSLEQLC 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  479 INYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFgldlqP----CIDLIErpANPPGVLALLDEECWFPKATDKSFVE 554
Cdd:cd14901    392 INFANEKLQQLFGKFVFEMEQDEYVAEAIPWTFVEY-----PnndaCVAMFE--ARPTGLFSLLDEQCLLPRGNDEKLAN 464
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  555 KVSQEQGTHPKFQKPRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAElwkdeiqniqkvyf 634
Cdd:cd14901    465 KYYDLLAKHASFSVSKLQQGKRQFVIHHYAGAVCYATDGFCDKNKDHVHSEALALLRTSSNAFLSS-------------- 530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  635 fdsyavapqgpvemdrivgldqvsgmgdlafgasyktkkgmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAG 714
Cdd:cd14901    531 -------------------------------------------TVVAKFKVQLSSLLEVLNATEPHFIRCIKPNDVLSPS 567
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  715 KLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERM-----IKALELDPNLFRI 789
Cdd:cd14901    568 EFDAKRVLEQLRCSGVLEAVKISRSGYPVRFPHDAFVHTYSCLAPDGASDTWKVNELAERLMsqlqhSELNIEHLPPFQV 647

                   ....*.
gi 1033370542  790 GQSKIF 795
Cdd:cd14901    648 GKTKVF 653
MYSc_Myo10 cd14873
class X myosin, motor domain; Myosin X is an unconventional myosin motor that functions as a ...
93-797 1.67e-158

class X myosin, motor domain; Myosin X is an unconventional myosin motor that functions as a monomer. In mammalian cells, the motor is found to localize to filopodia. Myosin X walks towards the barbed ends of filaments and is thought to walk on bundles of actin, rather than single filaments, a unique behavior. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to the head domain are a variable number of IQ domains, 2 PH domains, a MyTH4 domain, and a FERM domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276840 [Multi-domain]  Cd Length: 651  Bit Score: 503.17  E-value: 1.67e-158
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCT 171
Cdd:cd14873      1 GSIMYNLFQRYKRNQIYTYIGSILASVNPYQPIAgLYEPATMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILIS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  172 GESGAGKTENTKKVIQYLAHVaSSHKArkdhnippEYPTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd14873     81 GESGAGKTESTKLILKFLSVI-SQQSL--------ELSLKEKTSCVEQAILESSPIMEAFGNAKTVYNNNSSRFGKFVQL 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLS-NGYLPIPGQQDKEIFH 330
Cdd:cd14873    152 NICQKGNIQGGRIVDYLLEKNRVVRQNPGERNYHIFYALLAGLEHEEREEFYLSTPENYHYLNqSGCVEDKTISDQESFR 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  331 ETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFrkeRNTDQASMPDNTAAQKLCHLLGMNVTEFTRAiLTPRIKVGR-D 409
Cdd:cd14873    232 EVITAMEVMQFSKEEVREVSRLLAGILHLGNIEF---ITAGGAQVSFKTALGRSAELLGLDPTQLTDA-LTQRSMFLRgE 307
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  410 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRaldRTKRQGA-SFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQ 488
Cdd:cd14873    308 EILTPLNVQQAVDSRDSLAMALYARCFEWVIKKINS---RIKGKEDfKSIGILDIFGFENFEVNHFEQFNINYANEKLQE 384
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  489 LFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQK 568
Cdd:cd14873    385 YFNKHIFSLEQLEYSREGLVWEDIDW-IDNGECLDLIEKKL---GLLALINEESHFPQATDSTLLEKLHSQHANNHFYVK 460
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  569 PRQLRDkaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffDSYAvapqgpvem 648
Cdd:cd14873    461 PRVAVN--NFGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLFEH-----------VSSR--------- 518
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  649 drivgldqvsGMGDLAFGASYKTKKgmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCN 728
Cdd:cd14873    519 ----------NNQDTLKCGSKHRRP----TVSSQFKDSLHSLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVLNQLRYS 584
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542  729 GVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKqaCERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14873    585 GMLETVRIRKAGYAVRRPFQDFYKRYKVLMRNLALPEDVRGK--CTSLLQLYDASNSEWQLGKTKVFLR 651
MYSc_Myo31 cd14892
class XXXI myosin, motor domain; Class XXXI myosins have a very long neck region consisting of ...
93-797 3.67e-158

class XXXI myosin, motor domain; Class XXXI myosins have a very long neck region consisting of 17 IQ motifs and 2 tandem ANK repeats that are separated by a PH domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276857 [Multi-domain]  Cd Length: 656  Bit Score: 502.37  E-value: 3.67e-158
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEM---PPHIYAISEAAYRSMLQDR----ED 165
Cdd:cd14892      1 APLLDVLRRRYERDAIYTFTADILISINPYKSIPLLYDVPGFDSQRKEEATAsspPPHVFSIAERAYRAMKGVGkgqgTP 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  166 QSILCTGESGAGKTENTKKVIQYLAhVASshKARKDhniPPEYPTEAKQGE-LERQLLQANPILEAFGNAKTVKNDNSSR 244
Cdd:cd14892     81 QSIVVSGESGAGKTEASKYIMKYLA-TAS--KLAKG---ASTSKGAANAHEsIEECVLLSNLILEAFGNAKTIRNDNSSR 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  245 FGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNG-YLPIPGQ 323
Cdd:cd14892    155 FGKYIQIHYNSDGRIAGASTDHFLLEKSRLVGPDANERNYHIFYQLLAGLDANENAALELTPAESFLFLNQGnCVEVDGV 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  324 QDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFrkERNTDQ----ASMPDNTAAQKLCHLLGMNVTEFTRAI 399
Cdd:cd14892    235 DDATEFKQLRDAMEQLGFDAEFQRPIFEVLAAVLHLGNVRF--EENADDedvfAQSADGVNVAKAAGLLGVDAAELMFKL 312
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  400 LTPRIKVGRDYV-QKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQ---------GASFIGILDIAGFEIF 469
Cdd:cd14892    313 VTQTTSTARGSVlEIKLTAREAKNALDALCKYLYGELFDWLISRINACHKQQTSGvtggaasptFSPFIGILDIFGFEIM 392
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  470 QLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLALLDEECWFP-KAT 548
Cdd:cd14892    393 PTNSFEQLCINFTNEMLQQQFNKHVFVLEQEVYASEGIDVSAIEFQ-DNQDCLDLIQKK--PLGLLPLLEEQMLLKrKTT 469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  549 DKSFVEKVSQEQ-GTHPKFQKPRQLRDkaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADkftaelwkdeiq 627
Cdd:cd14892    470 DKQLLTIYHQTHlDKHPHYAKPRFECD--EFVLRHYAGDVTYDVHGFLAKNNDNLHDDLRDLLRSSSK------------ 535
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  628 niqkvyffdsyavapqgpvemdrivgldqvsgmgdlafgasyktkkgmFRTvgqlykeSLSKLMSTLRNTNPNFVRCIIP 707
Cdd:cd14892    536 ------------------------------------------------FRT-------QLAELMEVLWSTTPSYIKCIKP 560
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  708 NHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPN-AIPKGFMDGKQACERMIKALE----- 781
Cdd:cd14892    561 NNLKFPGGFSCELVRDQLIYSGVLEVVRIRREGFPIRRQFEEFYEKFWPLARNkAGVAASPDACDATTARKKCEEivara 640
                          730
                   ....*....|....*.
gi 1033370542  782 LDPNLFRIGQSKIFFR 797
Cdd:cd14892    641 LERENFQLGRTKVFLR 656
MYSc_Myo46 cd14907
class XLVI myosin, motor domain; The class XLVI myosins are comprised of Alveolata. Not much ...
93-760 1.07e-145

class XLVI myosin, motor domain; The class XLVI myosins are comprised of Alveolata. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276872 [Multi-domain]  Cd Length: 669  Bit Score: 468.36  E-value: 1.07e-145
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRH--------EMPPHIYAISEAAYRSMLQDR 163
Cdd:cd14907      1 AELLINLKKRYQQDKIFTYVGPTLIVMNPYKQIDnLFSEEVMQMYKEQIIQngeyfdikKEPPHIYAIAALAFKQLFENN 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  164 EDQSILCTGESGAGKTENTKKVIQYLAHVASSHKARKDHNIPPEY--PTEAKQGELERQLLQANPILEAFGNAKTVKNDN 241
Cdd:cd14907     81 KKQAIVISGESGAGKTENAKYAMKFLTQLSQQEQNSEEVLTLTSSirATSKSTKSIEQKILSCNPILEAFGNAKTVRNDN 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  242 SSRFGKFIRINFD-VAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEP---FNQYRFLS-NG 316
Cdd:cd14907    161 SSRFGKYVSILVDkKKRKILGARIQNYLLEKSRVTQQGQGERNYHIFYHLLYGADQQLLQQLGLKNqlsGDRYDYLKkSN 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  317 YLPIPGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVF--RKERNTDQASMPDNTAAQKLCHLLGMNVTE 394
Cdd:cd14907    241 CYEVDTINDEKLFKEVQQSFQTLGFTEEEQDSIWRILAAILLLGNLQFddSTLDDNSPCCVKNKETLQIIAKLLGIDEEE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  395 FTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRAL-------DRTKRQGASFIGILDIAGFE 467
Cdd:cd14907    321 LKEALTTKIRKVGNQVITSPLSKKECINNRDSLSKELYDRLFNWLVERLNDTImpkdekdQQLFQNKYLSIGLLDIFGFE 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  468 IFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIE--WNFIDFgLDLQPCIDLIERPanPPGVLALLDEECWFP 545
Cdd:cd14907    401 VFQNNSFEQLCINYTNEKLQQLYISYVFKAEEQEFKEEGLEdyLNQLSY-TDNQDVIDLLDKP--PIGIFNLLDDSCKLA 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  546 KATDKSFVEKVSQEQGTHPKFQKPRQLRdKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDE 625
Cdd:cd14907    478 TGTDEKLLNKIKKQHKNNSKLIFPNKIN-KDTFTIRHTAKEVEYNIEGFREKNKDEISQSIINCIQNSKNRIISSIFSGE 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  626 IQNIQkvyffdsyavapqgpvemdrivglDQVSgmgdlafgaSYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCI 705
Cdd:cd14907    557 DGSQQ------------------------QNQS---------KQKKSQKKDKFLGSKFRNQMKQLMNELMQCDVHFIRCI 603
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  706 IPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPN 760
Cdd:cd14907    604 KPNEEKKADLFIQGYVLNQIRYLGVLESIRVRKQGYPYRKSYEDFYKQYSLLKKN 658
MYSc_Myo28 cd14889
class XXVIII myosin, motor domain; These myosins are found in fish, chicken, and mollusks. The ...
95-797 1.51e-145

class XXVIII myosin, motor domain; These myosins are found in fish, chicken, and mollusks. The tail regions of these class-XXVIII myosins consist of an IQ motif, a short coiled-coil region, and an SH2 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276854  Cd Length: 659  Bit Score: 467.46  E-value: 1.51e-145
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   95 VLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSML----QDREDQSILC 170
Cdd:cd14889      3 LLEVLKVRFMQSNIYTYVGDILVAINPFKYLHIYEKEVSQKYKCEKKSSLPPHIFAVADRAYQSMLgrlaRGPKNQCIVI 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  171 TGESGAGKTENTKKVIQYLAHVASSHKarkdhnippeypteakqgELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 250
Cdd:cd14889     83 SGESGAGKTESTKLLLRQIMELCRGNS------------------QLEQQILQVNPLLEAFGNAQTVMNDNSSRFGKYIQ 144
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  251 INFDvAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVG-AGEHMKGELLLEPfNQYRFLSNGYlpipGQQD---- 325
Cdd:cd14889    145 LRFR-NGHVKGAKINEYLLEKSRVVHQDGGEENFHIFYYMFAGiSAEDRENYGLLDP-GKYRYLNNGA----GCKRevqy 218
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  326 -KEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFrkERNTDQASMPDNTAAQKL---CHLLGMNVTEFTRAiLT 401
Cdd:cd14889    219 wKKKYDEVCNAMDMVGFTEQEEVDMFTILAGILSLGNITF--EMDDDEALKVENDSNGWLkaaAGQFGVSEEDLLKT-LT 295
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  402 PRIKVGR-DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQG--ASFIGILDIAGFEIFQLNSFEQLC 478
Cdd:cd14889    296 CTVTFTRgEQIQRHHTKQQAEDARDSIAKVAYGRVFGWIVSKINQLLAPKDDSSveLREIGILDIFGFENFAVNRFEQAC 375
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  479 INYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIErpANPPGVLALLDEECWFPKATDKSFVEKVSQ 558
Cdd:cd14889    376 INLANEQLQYFFNHHIFLMEQKEYKKEGIDWKEITY-KDNKPILDLFL--NKPIGILSLLDEQSHFPQATDESFVDKLNI 452
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  559 EQGTHPKFQKPRqlRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKdeiqniqkvyffdsy 638
Cdd:cd14889    453 HFKGNSYYGKSR--SKSPKFTVNHYAGKVTYNASGFLEKNRDTIPASIRTLFINSATPLLSVLFT--------------- 515
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  639 AVAPQGPVEMDRIVGLDQvsgmGDLAFGASYKtkkgmfRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEP 718
Cdd:cd14889    516 ATRSRTGTLMPRAKLPQA----GSDNFNSTRK------QSVGAQFKHSLGVLMEKMFAASPHFVRCIKPNHVKVPGQLDS 585
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  719 HLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEIL--TPNaIPKgfmdGKQACERMIKALELDPnlFRIGQSKIFF 796
Cdd:cd14889    586 KYIQDQLRYNGLLETIRIRREGFSWRPSFAEFAERYKILlcEPA-LPG----TKQSCLRILKATKLVG--WKCGKTRLFF 658

                   .
gi 1033370542  797 R 797
Cdd:cd14889    659 K 659
MYSc_Myo39 cd14900
class XXXIX myosin, motor domain; The class XXXIX myosins are found in Stramenopiles. Not much ...
94-757 3.59e-142

class XXXIX myosin, motor domain; The class XXXIX myosins are found in Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276865  Cd Length: 627  Bit Score: 457.08  E-value: 3.59e-142
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMY-----------RGKKRHEMPPHIYAISEAAYRSM-- 159
Cdd:cd14900      2 TILSALETRFYAQKIYTNTGAILLAVNPFQKLPgLYSSDTMAKYllsfearssstRNKGSDPMPPHIYQVAGEAYKAMml 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  160 --LQDREDQSILCTGESGAGKTENTKKVIQYLAHVAsshkarkDHNIPPEYPTEAKQGELERQLLQANPILEAFGNAKTV 237
Cdd:cd14900     82 glNGVMSDQSILVSGESGSGKTESTKFLMEYLAQAG-------DNNLAASVSMGKSTSGIAAKVLQTNILLESFGNARTL 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  238 KNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEhmkgelllepfnqyrflsngy 317
Cdd:cd14900    155 RNDNSSRFGKFIKLHFTSGGRLTGASIQTYLLEKVRLVSQSKGERNYHIFYEMAIGASE--------------------- 213
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  318 lpipGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTD-QASMPDNTAAQKL------CHLLGM 390
Cdd:cd14900    214 ----AARKRDMYRRVMDAMDIIGFTPHERAGIFDLLAALLHIGNLTFEHDENSDrLGQLKSDLAPSSIwsrdaaATLLSV 289
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  391 NVTEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRAL---DRTKRQGAS-FIGILDIAGF 466
Cdd:cd14900    290 DATKLEKALSVRRIRAGTDFVSMKLSAAQANNARDALAKALYGRLFDWLVGKMNAFLkmdDSSKSHGGLhFIGILDIFGF 369
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  467 EIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPK 546
Cdd:cd14900    370 EVFPKNSFEQLCINFANETLQQQFNDYVFKAEQREYESQGVDWKYVEFC-DNQDCVNLIS--QRPTGILSLIDEECVMPK 446
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  547 ATDKSFVEKVSQEQGTHPKFQKPRQLRDKADFCIIHYAGKVDYKADEWLMKNMDplndnvatLLHQSAdkftaelwkdei 626
Cdd:cd14900    447 GSDTTLASKLYRACGSHPRFSASRIQRARGLFTIVHYAGHVEYSTDGFLEKNKD--------VLHQEA------------ 506
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  627 qniqkvyffdsyavapqgpvemdrivgLDqvsgmgdlafgasyktkkgMFRTVGQlYKESLSKLMSTLRNTNPNFVRCII 706
Cdd:cd14900    507 ---------------------------VD-------------------LFVYGLQ-FKEQLTTLLETLQQTNPHYVRCLK 539
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1033370542  707 PNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEIL 757
Cdd:cd14900    540 PNDLCKAGIYERERVLNQLRCNGVMEAVRVARAGFPIRLLHDEFVARYFSL 590
MYSc_Myo43 cd14904
class XLIII myosin, motor domain; The class XLIII myosins are comprised of Stramenopiles. Not ...
93-797 1.58e-135

class XLIII myosin, motor domain; The class XLIII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276869  Cd Length: 653  Bit Score: 439.38  E-value: 1.58e-135
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCT 171
Cdd:cd14904      1 PSILFNLKKRFAASKPYTYTNDIVIALNPYKWIDnLYGDHLHEQYLKKPRDKLQPHVYATSTAAYKHMLTNEMNQSILVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  172 GESGAGKTENTKKVIQYLAHVASshkARKDHNIPpeypteakqgelerQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd14904     81 GESGAGKTETTKIVMNHLASVAG---GRKDKTIA--------------KVIDVNPLLESFGNAKTTRNDNSSRFGKFTQL 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFL--SNGYLPIPGQQDKEIF 329
Cdd:cd14904    144 QFDGRGKLIGAKCETYLLEKSRVVSIAEGERNYHIFYQLLAGLSSEERKEFGLDPNCQYQYLgdSLAQMQIPGLDDAKLF 223
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  330 HETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFrKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRD 409
Cdd:cd14904    224 ASTQKSLSLIGLDNDAQRTLFKILSGVLHLGEVMF-DKSDENGSRISNGSQLSQVAKMLGLPTTRIEEALCNRSVVTRNE 302
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  410 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQL 489
Cdd:cd14904    303 SVTVPLAPVEAEENRDALAKAIYSKLFDWMVVKINAAISTDDDRIKGQIGVLDIFGFEDFAHNGFEQFCINYANEKLQQK 382
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  490 FNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpaNPPGVLALLDEECWFPKATDKSFVEKV---SQEQGTHPKF 566
Cdd:cd14904    383 FTTDVFKTVEEEYIREGLQWDHIEYQ-DNQGIVEVID---GKMGIIALMNDHLRQPRGTEEALVNKIrtnHQTKKDNESI 458
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  567 QKPRQLRDKadFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAElwkdeiqniqkvyFFDSyavapqgpV 646
Cdd:cd14904    459 DFPKVKRTQ--FIINHYAGPVTYETVGFMEKHRDTLQNDLLDLVLLSSLDLLTE-------------LFGS--------S 515
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  647 EMDRivgldqvsgmgDLAFGASYKTKKGMfRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLR 726
Cdd:cd14904    516 EAPS-----------ETKEGKSGKGTKAP-KSLGSQFKTSLSQLMDNIKTTNTHYVRCIKPNANKSPTEFDKRMVVEQLR 583
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1033370542  727 CNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGfmDGKQACERMIKAL-ELDPNLFRIGQSKIFFR 797
Cdd:cd14904    584 SAGVIEAIRITRSGYPSRLTPKELATRYAIMFPPSMHSK--DVRRTCSVFMTAIgRKSPLEYQIGKSLIYFK 653
MYSc_Myo30 cd14891
class XXX myosin, motor domain; Myosins of class XXX are composed of an amino-terminal ...
93-797 1.97e-133

class XXX myosin, motor domain; Myosins of class XXX are composed of an amino-terminal SH3-like domain, two IQ motifs, a coiled-coil region and a PX domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276856  Cd Length: 645  Bit Score: 432.93  E-value: 1.97e-133
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRyySGLI----YTYSGLFCVVINPYKNLPiytEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDRE---D 165
Cdd:cd14891      1 AGILHNLEER--SKLDnqrpYTFMANVLIAVNPLRRLP---EPDKSDYINTPLDPCPPHPYAIAEMAYQQMCLGSGrmqN 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  166 QSILCTGESGAGKTENTKKVIQYLAHVASSHKARKDHNIPPEYPTEAKQG-ELERQLLQANPILEAFGNAKTVKNDNSSR 244
Cdd:cd14891     76 QSIVISGESGAGKTETSKIILRFLTTRAVGGKKASGQDIEQSSKKRKLSVtSLDERLMDTNPILESFGNAKTLRNHNSSR 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  245 FGKFIRINFDVAGY-IVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLS-NGYLPIPG 322
Cdd:cd14891    156 FGKFMKLQFTKDKFkLAGAFIETYLLEKSRLVAQPPGERNFHIFYQLLAGASAELLKELLLLSPEDFIYLNqSGCVSDDN 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  323 QQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRK----ERNTDQASMPDNTAAQKLCHLLGMNVTEFTRA 398
Cdd:cd14891    236 IDDAANFDNVVSALDTVGIDEDLQLQIWRILAGLLHLGNIEFDEedtsEGEAEIASESDKEALATAAELLGVDEEALEKV 315
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  399 ILTPRIkVGRDYVQKAQ-TKEQADFAVEALAKATYERLFRWLVHRINRALDRtKRQGASFIGILDIAGFEIFQL-NSFEQ 476
Cdd:cd14891    316 ITQREI-VTRGETFTIKrNAREAVYSRDAIAKSIYERLFLWIVQQINTSLGH-DPDPLPYIGVLDIFGFESFETkNDFEQ 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  477 LCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPKATDKSFVEKV 556
Cdd:cd14891    394 LLINYANEALQATFNQQVFIAEQELYKSEGIDVGVITWP-DNRECLDLIA--SKPNGILPLLDNEARNPNPSDAKLNETL 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  557 SQEQGTHPKFQKPRQlRDKAD-FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSAdKFtaelwkdeiqniqkvyff 635
Cdd:cd14891    471 HKTHKRHPCFPRPHP-KDMREmFIVKHYAGTVSYTIGSFIDKNNDIIPEDFEDLLASSA-KF------------------ 530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  636 dsyavapqgpvemdrivgLDQVSGmgdlafgasyktkkgmfrtvgqlykeslskLMSTLRNTNPNFVRCIIPNHEKRAGK 715
Cdd:cd14891    531 ------------------SDQMQE------------------------------LVDTLEATRCNFIRCIKPNAAMKVGV 562
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  716 LEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQA-CERMIKALELDPNLFRIGQSKI 794
Cdd:cd14891    563 FDNRYVVDQLRCSGILQTCEVLKVGLPTRVTYAELVDVYKPVLPPSVTRLFAENDRTlTQAILWAFRVPSDAYRLGRTRV 642

                   ...
gi 1033370542  795 FFR 797
Cdd:cd14891    643 FFR 645
MYSc_Myo47 cd14908
class XLVII myosin, motor domain; The class XLVII myosins are comprised of Stramenopiles. Not ...
93-783 7.06e-132

class XLVII myosin, motor domain; The class XLVII myosins are comprised of Stramenopiles. Not much is known about this myosin class. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276873 [Multi-domain]  Cd Length: 682  Bit Score: 430.10  E-value: 7.06e-132
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYR--GKKRHE-------MPPHIYAISEAAYRSMLQD- 162
Cdd:cd14908      1 PAILHSLSRRFFRGIIYTWTGPVLIAVNPFQRLPLYGKEILESYRqeGLLRSQgiespqaLGPHVFAIADRSYRQMMSEi 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  163 REDQSILCTGESGAGKTENTKKVIQYLAHVASSHkarkdhNIPPEYPTEAKQGELERQLLQANPILEAFGNAKTVKNDNS 242
Cdd:cd14908     81 RASQSILISGESGAGKTESTKIVMLYLTTLGNGE------EGAPNEGEELGKLSIMDRVLQSNPILEAFGNARTLRNDNS 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  243 SRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGE--HMKGELL------LEPFNQYRFLS 314
Cdd:cd14908    155 SRFGKFIELGFNRAGNLLGAKVQTYLLEKVRLPFHASGERNYHIFYQLLRGGDEeeHEKYEFHdgitggLQLPNEFHYTG 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  315 NGYLPIPGQ-QDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNtDQASMPDNTAAQK----LCHLLG 389
Cdd:cd14908    235 QGGAPDLREfTDEDGLVYTLKAMRTMGWEESSIDTILDIIAGLLHLGQLEFESKEE-DGAAEIAEEGNEKclarVAKLLG 313
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  390 MNVTEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRAL--DRTKRQGASfIGILDIAGFE 467
Cdd:cd14908    314 VDVDKLLRALTSKIIVVRGKEITTKLTPHKAYDARDALAKTIYGALFLWVVATVNSSInwENDKDIRSS-VGVLDIFGFE 392
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  468 IFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFP-K 546
Cdd:cd14908    393 CFAHNSFEQLCINFTNEALQQQFNQFIFKLEQKEYEKESIEWAFIEFP-DNQDCLDTIQ--AKKKGILTMLDDECRLGiR 469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  547 ATDKSFVEKV--------SQEQGTHPKFQKPRQLRDKADFCIIHYAGKVDYKADEWLM-KNmdplndnvatllhqsadkf 617
Cdd:cd14908    470 GSDANYASRLyetylpekNQTHSENTRFEATSIQKTKLIFAVRHFAGQVQYTVETTFCeKN------------------- 530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  618 taelwKDEIQNIQKVYFfdsyavapqgpvemdrivgldqvsgmgdlafgasyktkkgmfrTVGQLYKESLSKLMSTLRNT 697
Cdd:cd14908    531 -----KDEIPLTADSLF-------------------------------------------ESGQQFKAQLHSLIEMIEDT 562
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  698 NPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPnAIPK----GFMDGKQAC 773
Cdd:cd14908    563 DPHYIRCIKPNDAAKPDLVTRKRVTEQLRYGGVLEAVRVARSGYPVRLPHKDFFKRYRMLLP-LIPEvvlsWSMERLDPQ 641
                          730
                   ....*....|
gi 1033370542  774 ERMIKALELD 783
Cdd:cd14908    642 KLCVKKMCKD 651
PTZ00014 PTZ00014
myosin-A; Provisional
91-850 1.34e-131

myosin-A; Provisional


Pssm-ID: 240229 [Multi-domain]  Cd Length: 821  Bit Score: 434.07  E-value: 1.34e-131
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   91 NEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHE-MPPHIYAISEAAYRSMLQDREDQSIL 169
Cdd:PTZ00014   108 NIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDkLPPHVFTTARRALENLHGVKKSQTII 187
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  170 CTGESGAGKTENTKKVIQYLAhvaSSHKARKDHNIppeypteakqgelERQLLQANPILEAFGNAKTVKNDNSSRFGKFI 249
Cdd:PTZ00014   188 VSGESGAGKTEATKQIMRYFA---SSKSGNMDLKI-------------QNAIMAANPVLEAFGNAKTIRNNNSSRFGRFM 251
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  250 RINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIF 329
Cdd:PTZ00014   252 QLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKDF 331
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  330 HETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVF--RKERNTDQASM--PDNTAA-QKLCHLLGMNVTEFTRAILTPRI 404
Cdd:PTZ00014   332 EEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIegKEEGGLTDAAAisDESLEVfNEACELLFLDYESLKKELTVKVT 411
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  405 KVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGAsFIGILDIAGFEIFQLNSFEQLCINYTNE 484
Cdd:PTZ00014   412 YAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKV-FIGMLDIFGFEVFKNNSLEQLFINITNE 490
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  485 KLQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLALLDEECWFPKATDKSFVEKVSQEQGTHP 564
Cdd:PTZ00014   491 MLQKNFVDIVFERESKLYKDEGISTEELEY-TSNESVIDLLCGKGK--SVLSILEDQCLAPGGTDEKFVSSCNTNLKNNP 567
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  565 KFqKPRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqg 644
Cdd:PTZ00014   568 KY-KPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEG-------------------- 626
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  645 pVEMDRivgldqvsgmGDLAfgasyktkKGMFrtVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQ 724
Cdd:PTZ00014   627 -VEVEK----------GKLA--------KGQL--IGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQ 685
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  725 LRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR---AGVL 801
Cdd:PTZ00014   686 LHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKkdaAKEL 765
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*....
gi 1033370542  802 AHLEEERDLKITDIIVSFQAAARGYLARKAFMKKqqqmsaLKVMQRNCA 850
Cdd:PTZ00014   766 TQIQREKLAAWEPLVSVLEALILKIKKKRKVRKN------IKSLVRIQA 808
MYSc_Myo35 cd14896
class XXXV myosin, motor domain; This class of metazoan myosins contains 2 IQ motifs, 2 MyTH4 ...
93-797 2.58e-126

class XXXV myosin, motor domain; This class of metazoan myosins contains 2 IQ motifs, 2 MyTH4 domains, a single FERM domain, and an SH3 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276861 [Multi-domain]  Cd Length: 644  Bit Score: 413.02  E-value: 2.58e-126
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14896      1 SSVLLCLKKRFHLGRIYTFGGPILLSLNPHRSLPLFSEEVLASYHPRKALNTTPHIFAIAASAYRLSQSTGQDQCILLSG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLahvASSHKARKDHNIppeypteakqgeleRQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14896     81 HSGSGKTEAAKKIVQFL---SSLYQDQTEDRL--------------RQPEDVLPILESFGHAKTILNANASRFGQVLRLH 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDvAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNG-YLPIPGQQDKEIFHE 331
Cdd:cd14896    144 LQ-HGVIVGASVSHYLLETSRVVFQAQAERSFHVFYELLAGLDPEEREQLSLQGPETYYYLNQGgACRLQGKEDAQDFEG 222
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQ--ASMPDNTAAQKLCHLLGMNvTEFTRAILTPRIKV-GR 408
Cdd:cd14896    223 LLKALQGLGLCAEELTAIWAVLAAILQLGNICFSSSERESQevAAVSSWAEIHTAARLLQVP-PERLEGAVTHRVTEtPY 301
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  409 DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGA-SFIGILDIAGFEIFQLNSFEQLCINYTNEKLQ 487
Cdd:cd14896    302 GRVSRPLPVEGAIDARDALAKTLYSRLFTWLLKRINAWLAPPGEAESdATIGVVDAYGFEALRVNGLEQLCINLASERLQ 381
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  488 QLFNHTMFVLEQEEYQREGIEWNFIDfGLDLQPCIDLIErpANPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQ 567
Cdd:cd14896    382 LFSSQTLLAQEEEECQRELLPWVPIP-QPPRESCLDLLV--DQPHSLLSILDDQTWLSQATDHTFLQKCHYHHGDHPSYA 458
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  568 KPRQlrDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKdEIQniqkvyffDSYAVAPQGPve 647
Cdd:cd14896    459 KPQL--PLPVFTVRHYAGTVTYQVHKFLNRNRDQLDPAVVEMLAQSQLQLVGSLFQ-EAE--------PQYGLGQGKP-- 525
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  648 mdrivgldqvsgmgdlafgasyktkkgmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRC 727
Cdd:cd14896    526 ------------------------------TLASRFQQSLGDLTARLGRSHVYFIHCLNPNPGKLPGLFDVGHVTEQLRQ 575
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  728 NGVLEGIRICRQGFPNRIIFQEFRQRYEILTpNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14896    576 AGILEAIGTRSEGFPVRVPFQAFLARFGALG-SERQEALSDRERCGAILSQVLGAESPLYHLGATKVLLK 644
MYSc_Myo14 cd14876
class XIV myosin, motor domain; These myosins localize to plasma membranes of the ...
93-795 9.26e-125

class XIV myosin, motor domain; These myosins localize to plasma membranes of the intracellular parasites and may be involved in the cell invasion process. Their known functions include: transporting phagosomes to the nucleus and perturbing the developmentally regulated elimination of the macronucleus during conjugation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to their motor domain these myosins have a MyTH4-FERM protein domain combination. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276843  Cd Length: 649  Bit Score: 408.61  E-value: 9.26e-125
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRH-EMPPHIYAISEAAYRSMLQDREDQSILCT 171
Cdd:cd14876      1 PCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNATDEWIRKYRDAPDLtKLPPHVFYTARRALENLHGVNKSQTIIVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  172 GESGAGKTENTKKVIQYLAhvaSSHKARKDHNIppeypteakqgelERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd14876     81 GESGAGKTEATKQIMRYFA---SAKSGNMDLRI-------------QTAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQL 144
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 nfDVA--GYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIF 329
Cdd:cd14876    145 --DVAseGGIRYGSVVAFLLEKSRIVTQDDNERSYHIFYQLLKGADSEMKSKYHLLGLKEYKFLNPKCLDVPGIDDVADF 222
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  330 HETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKErntDQASMPDntAA----------QKLCHLLGMNVTEFTRAI 399
Cdd:cd14876    223 EEVLESLKSMGLTEEQIDTVFSIVSGVLLLGNVKITGK---TEQGVDD--AAaisneslevfKEACSLLFLDPEALKREL 297
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  400 LTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDrtKRQG-ASFIGILDIAGFEIFQLNSFEQLC 478
Cdd:cd14876    298 TVKVTKAGGQEIEGRWTKDDAEMLKLSLAKAMYDKLFLWIIRNLNSTIE--PPGGfKNFMGMLDIFGFEVFKNNSLEQLF 375
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  479 INYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLALLDEECWFPKATDKSFVEKVSQ 558
Cdd:cd14876    376 INITNEMLQKNFIDIVFERESKLYKDEGIPTAELEY-TSNAEVIDVLCGKGK--SVLSILEDQCLAPGGSDEKFVSACVS 452
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  559 EQGTHPKFqKPRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsy 638
Cdd:cd14876    453 KLKSNGKF-KPAKVDSNINFIVVHTIGDIQYNAEGFLFKNKDVLRAELVEVVQASTNPVVKALFEG-------------- 517
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  639 avapqgpVEMDRivgldqvsgmGDLAfgasyktkKGMFrtVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEP 718
Cdd:cd14876    518 -------VVVEK----------GKIA--------KGSL--IGSQFLKQLESLMGLINSTEPHFIRCIKPNETKKPLEWNS 570
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542  719 HLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKIF 795
Cdd:cd14876    571 SKVLIQLHALSILEALQLRQLGYSYRRPFEEFLYQFKFLDLGIANDKSLDPKVAALKLLESSGLSEDEYAIGKTMVF 647
MYSc_Myo34 cd14895
class XXXIV myosin, motor domain; Class XXXIV myosins are composed of an IQ motif, a short ...
94-758 3.65e-124

class XXXIV myosin, motor domain; Class XXXIV myosins are composed of an IQ motif, a short coiled-coil region, 5 tandem ANK repeats, and a carboxy-terminal FYVE domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276860 [Multi-domain]  Cd Length: 704  Bit Score: 408.96  E-value: 3.65e-124
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPiyteqivEMYRGKKRHE-------MPPHIYAISEAAYRSMLQ----- 161
Cdd:cd14895      2 AFVDYLAQRYGVDQVYCRSGAVLIAVNPFKHIP-------GLYDLHKYREempgwtaLPPHVFSIAEGAYRSLRRrlhep 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  162 --DREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKARKDhnippeypTEAKQGELERQLLQANPILEAFGNAKTVKN 239
Cdd:cd14895     75 gaSKKNQTILVSGESGAGKTETTKFIMNYLAESSKHTTATSS--------SKRRRAISGSELLSANPILESFGNARTLRN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  240 DNSSRFGKFIRINF-----DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFN--QYRF 312
Cdd:cd14895    147 DNSSRFGKFVRMFFeghelDTSLRMIGTSVETYLLEKVRVVHQNDGERNFHVFYELLAGAADDMKLELQLELLSaqEFQY 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  313 LSNG--YLPIPGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTD---------------QASM 375
Cdd:cd14895    227 ISGGqcYQRNDGVRDDKQFQLVLQSMKVLGFTDVEQAAIWKILSALLHLGNVLFVASSEDEgeedngaasapcrlaSASP 306
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  376 PDNTAAQKL---CHLLGMNVTEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTK- 451
Cdd:cd14895    307 SSLTVQQHLdivSKLFAVDQDELVSALTTRKISVGGETFHANLSLAQCGDARDAMARSLYAFLFQFLVSKVNSASPQRQf 386
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  452 ---------RQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGLDlQPCI 522
Cdd:cd14895    387 alnpnkaanKDTTPCIAVLDIFGFEEFEVNQFEQFCINYANEKLQYQFIQDILLTEQQAHIEEGIKWNAVDYEDN-SVCL 465
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  523 DLIErpANPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRqlRDKAD--FCIIHYAGKVDYKADEWLMKNMD 600
Cdd:cd14895    466 EMLE--QRPSGIFSLLDEECVVPKGSDAGFARKLYQRLQEHSNFSASR--TDQADvaFQIHHYAGAVRYQAEGFCEKNKD 541
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  601 PLNDNVATLLHQSADKFTAELWKdeiqniqkvyFFDSYAVAPQGPVEMDRIVGLDQVSGMGdlafgasyktkkgmfrtVG 680
Cdd:cd14895    542 QPNAELFSVLGKTSDAHLRELFE----------FFKASESAELSLGQPKLRRRSSVLSSVG-----------------IG 594
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542  681 QLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILT 758
Cdd:cd14895    595 SQFKQQLASLLDVVQQTQTHYIRCIKPNDESASDQFDMAKVSSQLRYGGVLKAVEIMRQSYPVRMKHADFVKQYRLLV 672
MYSc_Myo41 cd14902
class XLI myosin, motor domain; The class XLI myosins are comprised of Stramenopiles. Not much ...
93-759 1.52e-123

class XLI myosin, motor domain; The class XLI myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276867 [Multi-domain]  Cd Length: 716  Bit Score: 407.36  E-value: 1.52e-123
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYR--------GKKRHEMPPHIYAISEAAYRSMLQ-D 162
Cdd:cd14902      1 AALLQALSERFEHDQIYTSIGDILVALNPLKPLPdLYSESQLNAYKasmtstspVSQLSELPPHVFAIGGKAFGGLLKpE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  163 REDQSILCTGESGAGKTENTKKVIQYLAHVASSHKARKDHNippeypteAKQGELERQLLQANPILEAFGNAKTVKNDNS 242
Cdd:cd14902     81 RRNQSILVSGESGSGKTESTKFLMQFLTSVGRDQSSTEQEG--------SDAVEIGKRILQTNPILESFGNAQTIRNDNS 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  243 SRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLL------EPFNQYrFLSNG 316
Cdd:cd14902    153 SRFGKFIKIQFGANNEIVGAQIVSYLLEKVRLLHQSPEERSFHIFYELLEGADKTLLDLLGLqkggkyELLNSY-GPSFA 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  317 YLPIPGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKE-RNTDQASMPDNTAAQ--KLCHLLGMNVT 393
Cdd:cd14902    232 RKRAVADKYAQLYVETVRAFEDTGVGELERLDIFKILAALLHLGNVNFTAEnGQEDATAVTAASRFHlaKCAELMGVDVD 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  394 EFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALD--------RTKRQGASFIGILDIAG 465
Cdd:cd14902    312 KLETLLSSREIKAGVEVMVLKLTPEQAKEICGSLAKAIYGRLFTWLVRRLSDEINyfdsavsiSDEDEELATIGILDIFG 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  466 FEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPANppGVLALLDEECWFP 545
Cdd:cd14902    392 FESLNRNGFEQLCINYANERLQAQFNEFVFVKEQQIYIAEGIDWKNISYP-SNAACLALFDDKSN--GLFSLLDQECLMP 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  546 KATDKSFVEKVSQEQGThpkfqkprqlrdKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDE 625
Cdd:cd14902    469 KGSNQALSTKFYRYHGG------------LGQFVVHHFAGRVCYNVEQFVEKNTDALPADASDILSSSSNEVVVAIGADE 536
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  626 IQNiqkvyffdsyavAPQGPVemdrivgldqvsgmgdlafGASYKTKKGMFRT--VGQLYKESLSKLMSTLRNTNPNFVR 703
Cdd:cd14902    537 NRD------------SPGADN-------------------GAAGRRRYSMLRApsVSAQFKSQLDRLIVQIGRTEAHYVR 585
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542  704 CIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTP 759
Cdd:cd14902    586 CLKPNEVKKPGIFDRERMVEQMRSVGVLEAVRIARHGYSVRLAHASFIELFSGFKC 641
MYSc_Myo18 cd01386
class XVIII myosin, motor domain; Many members of this class contain a N-terminal PDZ domain ...
93-797 3.80e-117

class XVIII myosin, motor domain; Many members of this class contain a N-terminal PDZ domain which is commonly found in proteins establishing molecular complexes. The motor domain itself does not exhibit ATPase activity, suggesting that it functions as an actin tether protein. It also has two IQ domains that probably bind light chains or related calmodulins and a C-terminal tail with two sections of coiled-coil domains, which are thought to mediate homodimerization. The function of these myosins are largely unknown. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276837 [Multi-domain]  Cd Length: 689  Bit Score: 388.21  E-value: 3.80e-117
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd01386      1 SSVLHTLRQRYGANLIHTYAGPSLIVINPRHPLAVYSEKVAKMFKGCRREDMPPHIYASAQSAYRAMLMSRRDQSIVLLG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVASSHKARkdhnippeypteakqgeLERQLLQA-NPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd01386     81 RSGSGKTTNCRHILEYLVTAAGSVGGV-----------------LSVEKLNAaLTVLEAFGNVRTALNGNATRFSQLFSL 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQyrflSNGYLPIPGQQDKEI--- 328
Cdd:cd01386    144 DFDQAGQLASASIQTLLLERSRVARRPEGESNFNVFYYLLAGADAALRTELHLNQLAE----SNSFGIVPLQKPEDKqka 219
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  329 ---FHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAI------ 399
Cdd:cd01386    220 aaaFSKLQAAMKTLGISEEEQRAIWSILAAIYHLGAAGATKAASAGRKQFARPEWAQRAAYLLGCTLEELSSAIfkhhls 299
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  400 ------LTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASfIGILDIAGfeiFQLN- 472
Cdd:cd01386    300 ggpqqsTTSSGQESPARSSSGGPKLTGVEALEGFAAGLYSELFAAVVSLINRSLSSSHHSTSS-ITIVDTPG---FQNPa 375
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  473 --------SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERP---ANPP--------- 532
Cdd:cd01386    376 hsgsqrgaTFEDLCHNYAQERLQLLFHERTFVAPLERYKQENVEVDFDLPELSPGALVALIDQApqqALVRsdlrdedrr 455
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  533 GVLALLDEECWFPKATDKSFVEKVSQEQGTHPKFQKPRQLRDKA---DFCIIHYAGK--VDYKADEWLMK-NMDPLNDNV 606
Cdd:cd01386    456 GLLWLLDEEALYPGSSDDTFLERLFSHYGDKEGGKGHSLLRRSEgplQFVLGHLLGTnpVEYDVSGWLKAaKENPSAQNA 535
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  607 ATLLHQSADKFTAelwkdeiqniqkvyffdsyavapqgpvemdrivgldqvsgmgdlafgasyKTKKGMFRTVgqlyKES 686
Cdd:cd01386    536 TQLLQESQKETAA--------------------------------------------------VKRKSPCLQI----KFQ 561
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  687 LSKLMSTLRNTNPNFVRCIIPNHEkrAGKLEPH--------------LVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQ 752
Cdd:cd01386    562 VDALIDTLRRTGLHFVHCLLPQHN--AGKDERStsspaagdelldvpLLRSQLRGSQLLDALRLYRQGFPDHMPLGEFRR 639
                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|
gi 1033370542  753 RYEILTPNAIPKGF-----MDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd01386    640 RFQVLAPPLTKKLGlnsevADERKAVEELLEELDLEKSSYRIGLSQVFFR 689
MYSc_Myo45 cd14906
class XLV myosin, motor domain; The class XLVI myosins are comprised of slime molds ...
93-760 3.85e-117

class XLV myosin, motor domain; The class XLVI myosins are comprised of slime molds Dictyostelium and Polysphondylium. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276871 [Multi-domain]  Cd Length: 715  Bit Score: 388.95  E-value: 3.85e-117
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKR-HEMPPHIYAISEAAYRSMLQDREDQSILC 170
Cdd:cd14906      1 AIILNNLGKRYKSDSIYTYIGNVLISINPYKDISsIYSNLILNEYKDINQnKSPIPHIYAVALRAYQSMVSEKKNQSIII 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  171 TGESGAGKTENTKKVIQYLAHVASSHKARKDHNippeyptEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 250
Cdd:cd14906     81 SGESGSGKTEASKTILQYLINTSSSNQQQNNNN-------NNNNNSIEKDILTSNPILEAFGNSRTTKNHNSSRFGKFLK 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  251 INFDVAGYIV-GANIETYLLEKSR-AIRQAKDERTFHIFYQLLVGAGEHMKGELLLEP-FNQYRFL-------------- 313
Cdd:cd14906    154 IEFRSSDGKIdGASIETYLLEKSRiSHRPDNINLSYHIFYYLVYGASKDERSKWGLNNdPSKYRYLdarddvissfksqs 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  314 SNGYLPIPGQQDK-EIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQAS--MPDNTAA-QKLCHLLG 389
Cdd:cd14906    234 SNKNSNHNNKTESiESFQLLKQSMESMSINKEQCDAIFLSLAAILHLGNIEFEEDSDFSKYAyqKDKVTASlESVSKLLG 313
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  390 MNVTEFTRAILTPRIKV-GRDYVQ-KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDR----------TKRQGASF 457
Cdd:cd14906    314 YIESVFKQALLNRNLKAgGRGSVYcRPMEVAQSEQTRDALSKSLYVRLFKYIVEKINRKFNQntqsndlaggSNKKNNLF 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  458 IGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLAL 537
Cdd:cd14906    394 IGVLDIFGFENLSSNSLEQLLINFTNEKLQQQFNLNVFENEQKEYLSEGIPWSNSNF-IDNKECIELIEKKSD--GILSL 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  538 LDEECWFPKATDKSFVEKVSQEQGTHPKFQKpRQLrDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADkf 617
Cdd:cd14906    471 LDDECIMPKGSEQSLLEKYNKQYHNTNQYYQ-RTL-AKGTLGIKHFAGDVTYQTDGWLEKNRDSLYSDVEDLLLASSN-- 546
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  618 taelwkdeiqNIQKVYFFDSYAVAPqgpvemdrivgldqvsgmgdlafgaSYKTKKGMFRTVGQLYKESLSKLMSTLRNT 697
Cdd:cd14906    547 ----------FLKKSLFQQQITSTT-------------------------NTTKKQTQSNTVSGQFLEQLNQLIQTINST 591
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1033370542  698 NPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPN 760
Cdd:cd14906    592 SVHYIRCIKPNQTMDCNNFNNVHVLSQLRNVGVLNTIKVRKMGYSYRRDFNQFFSRYKCIVDM 654
MYSc_Myo19 cd14880
class XIX myosin, motor domain; Monomeric myosin-XIX (Myo19) functions as an actin-based motor ...
93-759 5.57e-114

class XIX myosin, motor domain; Monomeric myosin-XIX (Myo19) functions as an actin-based motor for mitochondrial movement in vertebrate cells. It contains a variable number of IQ domains. Human myo19 contains a motor domain, three IQ motifs, and a short tail. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276846 [Multi-domain]  Cd Length: 658  Bit Score: 378.04  E-value: 5.57e-114
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKR-HEMPPHIYAISEAAYRSMLQDRE--DQSI 168
Cdd:cd14880      1 ETVLRCLQARYTADTFYTNAGCTLVALNPFKPVPqLYSPELMREYHAAPQpQKLKPHIFTVGEQTYRNVKSLIEpvNQSI 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  169 LCTGESGAGKTENTKKVIQYLAHVASShkarkdhnipPEYPTEAKQGE-LERQLLQANPILEAFGNAKTVKNDNSSRFGK 247
Cdd:cd14880     81 VVSGESGAGKTWTSRCLMKFYAVVAAS----------PTSWESHKIAErIEQRILNSNPVMEAFGNACTLRNNNSSRFGK 150
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  248 FIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIpgqqDKE 327
Cdd:cd14880    151 FIQLQLNRAQQMTGAAVQTYLLEKTRVACQAPSERNFHIFYQICKGASADERLQWHLPEGAAFSWLPNPERNL----EED 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  328 IFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTA---AQKLCHLLGMNVTEFTRAILTPRI 404
Cdd:cd14880    227 CFEVTREAMLHLGIDTPTQNNIFKVLAGLLHLGNIQFADSEDEAQPCQPMDDTkesVRTSALLLKLPEDHLLETLQIRTI 306
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  405 KVGRDYV--QKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFEIFQLNSFEQLCINYT 482
Cdd:cd14880    307 RAGKQQQvfKKPCSRAECDTRRDCLAKLIYARLFDWLVSVINSSICADTDSWTTFIGLLDVYGFESFPENSLEQLCINYA 386
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  483 NEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPKATDKSFVEKVSQEQGT 562
Cdd:cd14880    387 NEKLQQHFVAHYLRAQQEEYAVEGLEWSFINYQ-DNQTCLDLIE--GSPISICSLINEECRLNRPSSAAQLQTRIESALA 463
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  563 HPKFQKPRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEIQNIQKVYffdsyavap 642
Cdd:cd14880    464 GNPCLGHNKLSREPSFIVVHYAGPVRYHTAGLVEKNKDPVPPELTRLLQQSQDPLLQKLFPANPEEKTQEE--------- 534
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  643 qgPVEMDRIVGLDQVSGmgdlafgasyktkkgmfrtvgqlYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVL 722
Cdd:cd14880    535 --PSGQSRAPVLTVVSK-----------------------FKASLEQLLQVLHSTTPHYIRCIKPNSQCQAQTFLQEEVL 589
                          650       660       670
                   ....*....|....*....|....*....|....*..
gi 1033370542  723 DQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTP 759
Cdd:cd14880    590 SQLEACGLVETIHISAAGFPIRVSHQNFVERYKLLRR 626
MYSc_Myo25 cd14886
class XXV myosin, motor domain; These myosins are MyTH-FERM myosins that play a role in cell ...
93-797 2.94e-108

class XXV myosin, motor domain; These myosins are MyTH-FERM myosins that play a role in cell adhesion and filopodia formation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276851  Cd Length: 650  Bit Score: 361.13  E-value: 2.94e-108
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRH-----EMPPHIYAISEAAYRSMLQDREDQ 166
Cdd:cd14886      1 AVVIDILRDRFAKDKIYTYAGKLLVALNPFKQIRnLYGTEVIGRYRQADTSrgfpsDLPPHSYAVAQSALNGLISDGISQ 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  167 SILCTGESGAGKTENTKKVIQYLAHVASShkarkdhnippeypteaKQGELERQLLQANPILEAFGNAKTVKNDNSSRFG 246
Cdd:cd14886     81 SCIVSGESGAGKTETAKQLMNFFAYGHST-----------------SSTDVQSLILGSNPLLESFGNAKTLRNNNSSRFG 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  247 KFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGY-LPIPGQQD 325
Cdd:cd14886    144 KFIKLLVGPDGGLKGGKITSYMLELSRIEFQSTNERNYHIFYQCIKGLSPEEKKSLGFKSLESYNFLNASKcYDAPGIDD 223
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  326 KEIFHETMESMRIMgFSHEEIHCMLRMVSAVLQFGNIVFRKERN--TDQASMPDNTAA-QKLCHLLGMNVTEFTRAILTP 402
Cdd:cd14886    224 QKEFAPVRSQLEKL-FSKNEIDSFYKCISGILLAGNIEFSEEGDmgVINAAKISNDEDfGKMCELLGIESSKAAQAIITK 302
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  403 RIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRAL---DRTKRqgasFIGILDIAGFEIFQLNSFEQLCI 479
Cdd:cd14886    303 VVVINNETIISPVTQAQAEVNIRAVAKDLYGALFELCVDTLNEIIqfdADARP----WIGILDIYGFEFFERNTYEQLLI 378
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  480 NYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPANppGVLALLDEECWFPKATDKSFVekvsqe 559
Cdd:cd14886    379 NYANERLQQYFINQVFKSEIQEYEIEGIDHSMITFT-DNSNVLAVFDKPNL--SIFSFLEEQCLIQTGSSEKFT------ 449
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  560 QGTHPKFQKPRQLRDKA---DFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffd 636
Cdd:cd14886    450 SSCKSKIKNNSFIPGKGsqcNFTIVHTAATVTYNTEEFVDKNKHKLSVDILELLMGSTNPIVNKAFSD------------ 517
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  637 syaVAPQGPvemdrivgldqvsgmgdlafgasykTKKGMFrtVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKL 716
Cdd:cd14886    518 ---IPNEDG-------------------------NMKGKF--LGSTFQLSIDQLMKTLSATKSHFIRCIKTNQDKVPNKY 567
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  717 EPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILT--PNAIPKGFMDGKQACERMIKALELDPNLFRIGQSKI 794
Cdd:cd14886    568 ETKSVYNQLISLSIFESIQTIHRGFAYNDTFEEFFHRNKILIshNSSSQNAGEDLVEAVKSILENLGIPCSDYRIGKTKV 647

                   ...
gi 1033370542  795 FFR 797
Cdd:cd14886    648 FLR 650
MYSc_Myo38 cd14899
class XXXVIII myosin; The class XXXVIII myosins are comprised of Stramenopiles. Not much is ...
93-754 2.64e-106

class XXXVIII myosin; The class XXXVIII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276864 [Multi-domain]  Cd Length: 717  Bit Score: 357.87  E-value: 2.64e-106
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMY----------RGKKRHEMPPHIYAISEAAYRSMLQ 161
Cdd:cd14899      1 ASILNALRLRYERHAIYTHIGDILISINPFQDLPqLYGDEILRGYaydhnsqfgdRVTSTDPREPHLFAVARAAYIDIVQ 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  162 DREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKARKDHNIPPEYPTEAKQGELERQLLQANPILEAFGNAKTVKNDN 241
Cdd:cd14899     81 NGRSQSILISGESGAGKTEATKIIMTYFAVHCGTGNNNLTNSESISPPASPSRTTIEEQVLQSNPILEAFGNARTVRNDN 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  242 SSRFGKFIRINF-DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVG-----AGEHMKGELLLEPFNQYRFLSN 315
Cdd:cd14899    161 SSRFGKFIELRFrDERRRLAGARIRTYLLEKIRVIKQAPHERNFHIFYELLSAdnncvSKEQKQVLALSGGPQSFRLLNQ 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  316 GYLPI--PGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVF-----RKERN--TDQASMPDNTAA----- 381
Cdd:cd14899    241 SLCSKrrDGVKDGVQFRATKRAMQQLGMSEGEIGGVLEIVAAVLHMGNVDFeqiphKGDDTvfADEARVMSSTTGafdhf 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  382 QKLCHLLGMNVTEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRT----------- 450
Cdd:cd14899    321 TKAAELLGVSTEALDHALTKRWLHASNETLVVGVDVAHARNTRNALTMECYRLLFEWLVARVNNKLQRQasapwgadesd 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  451 ---KRQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIER 527
Cdd:cd14899    401 vddEEDATDFIGLLDIFGFEDMAENSFEQLCINYANEALQHQFNQYIFEEEQRLYRDEGIRWSFVDFP-NNRACLELFEH 479
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  528 paNPPGVLALLDEECWFPKATDKSFVEKVSQE---QGTHPKFQKPRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLND 604
Cdd:cd14899    480 --RPIGIFSLTDQECVFPQGTDRALVAKYYLEfekKNSHPHFRSAPLIQRTTQFVVAHYAGCVTYTIDGFLAKNKDSFCE 557
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  605 NVATLLHQSADKFTAELWKdeiqniqkvyffDSYAVAPQGPVEMDRIVGLDQVSGMGDLAfgasyktkkgmFRTVGQLYK 684
Cdd:cd14899    558 SAAQLLAGSSNPLIQALAA------------GSNDEDANGDSELDGFGGRTRRRAKSAIA-----------AVSVGTQFK 614
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  685 ESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRY 754
Cdd:cd14899    615 IQLNELLSTVRATTPRYVRCIKPNDSHVGSLFQSTRVVEQLRSGGVLEAVRVARAGFPVRLTHKQFLGRY 684
MYSc_Myo13 cd14875
class XIII myosin, motor domain; These myosins have an N-terminal motor domain, a light-chain ...
93-797 8.83e-106

class XIII myosin, motor domain; These myosins have an N-terminal motor domain, a light-chain binding domain, and a C-terminal GPA/Q-rich domain. There is little known about the function of this myosin class. Two of the earliest members identified in this class are green alga Acetabularia cliftonii, Aclmyo1 and Aclmyo2. They are striking with their short tail of Aclmyo1 of 18 residues and the maximum of 7 IQ motifs in Aclmyo2. It is thought that these myosins are involved in organelle transport and tip growth. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276842 [Multi-domain]  Cd Length: 664  Bit Score: 354.50  E-value: 8.83e-106
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYS-GLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRG-KKRHEMPPHIYAISEAAYRSM-LQDREDQSIL 169
Cdd:cd14875      1 ATLLHCIKERFEKlHQQYSLMGEMVLSVNPFRLMPFNSEEERKKYLAlPDPRLLPPHIWQVAHKAFNAIfVQGLGNQSVV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  170 CTGESGAGKTENTKKVIQYL---AHVASSHKARKdhnippeypTEAKQgeLERQLLQANPILEAFGNAKTVKNDNSSRFG 246
Cdd:cd14875     81 ISGESGSGKTENAKMLIAYLgqlSYMHSSNTSQR---------SIADK--IDENLKWSNPVMESFGNARTVRNDNSSRFG 149
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  247 KFIRINFD-VAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGEL-LLEPFNQYRFLSNGYL----PI 320
Cdd:cd14875    150 KYIKLYFDpTSGVMVGGQTVTYLLEKSRIIMQSPGERNYHIFYEMLAGLSPEEKKELgGLKTAQDYKCLNGGNTfvrrGV 229
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  321 PGQ--QDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNtDQASMPDNTAAQKLCHLLGMNVTEFTRA 398
Cdd:cd14875    230 DGKtlDDAHEFQNVRHALSMIGVELETQNSIFRVLASILHLMEVEFESDQN-DKAQIADETPFLTACRLLQLDPAKLREC 308
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  399 ILtprIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALD-RTKRQGASFIGILDIAGFEIFQLNSFEQL 477
Cdd:cd14875    309 FL---VKSKTSLVTILANKTEAEGFRNAFCKAIYVGLFDRLVEFVNASITpQGDCSGCKYIGLLDIFGFENFTRNSFEQL 385
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  478 CINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPKATDKSFVEKVS 557
Cdd:cd14875    386 CINYANESLQNHYNKYTFINDEEECRREGIQIPKIEFP-DNSECVNMFD--QKRTGIFSMLDEECNFKGGTTERFTTNLW 462
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  558 QE-QGTHPKFQKPRQLRDKaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWkdeiqniqkvyffd 636
Cdd:cd14875    463 DQwANKSPYFVLPKSTIPN-QFGVNHYAAFVNYNTDEWLEKNTDALKEDMYECVSNSTDEFIRTLL-------------- 527
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  637 syavaPQGPVEMDRIvgldqvsgmgdlafgasyktkkgmfRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKL 716
Cdd:cd14875    528 -----STEKGLARRK-------------------------QTVAIRFQRQLTDLRTELESTETQFIRCIKPNMEASPSFL 577
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  717 EPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGK--QACERMIKALE-----LDPNlFRI 789
Cdd:cd14875    578 DNLLVGSQLESAGVLQTIALKRQGYPVRRPIEQFCRYFYLIMPRSTASLFKQEKysEAAKDFLAYYQrlygwAKPN-YAV 656

                   ....*...
gi 1033370542  790 GQSKIFFR 797
Cdd:cd14875    657 GKTKVFLR 664
MYSc_Myo37 cd14898
class XXXVII myosin, motor domain; The class XXXVIII myosins are comprised of fungi. Not much ...
94-761 3.39e-95

class XXXVII myosin, motor domain; The class XXXVIII myosins are comprised of fungi. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276863  Cd Length: 578  Bit Score: 320.69  E-value: 3.39e-95
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNlpIYTEQIVEMYRGKKRHeMPPHIYAISEAAYRSMLQdREDQSILCTGE 173
Cdd:cd14898      2 ATLEILEKRYASGKIYTKSGLVFLALNPYET--IYGAGAMKAYLKNYSH-VEPHVYDVAEASVQDLLV-HGNQTIVISGE 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAHVASSHKArkdhnippeypteakqgeLERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd14898     78 SGSGKTENAKLVIKYLVERTASTTS------------------IEKLITAANLILEAFGNAKTQLNDNSSRFGKRIKLKF 139
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DvaGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGElllepFNQYRF-LSNGYLPIPGQQDKEIFHET 332
Cdd:cd14898    140 D--GKITGAKFETYLLEKSRVTHHEKGERNFHIFYQFCASKRLNIKND-----FIDTSStAGNKESIVQLSEKYKMTCSA 212
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  333 MESMRIMGFSHEEiHCMLrmvsAVLQFGNIVFRKERNTDQASmpdNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYVQ 412
Cdd:cd14898    213 MKSLGIANFKSIE-DCLL----GILYLGSIQFVNDGILKLQR---NESFTEFCKLHNIQEEDFEESLVKFSIQVKGETIE 284
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  413 KAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTkrqGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNH 492
Cdd:cd14898    285 VFNTLKQARTIRNSMARLLYSNVFNYITASINNCLEGS---GERSISVLDIFGFEIFESNGLDQLCINWTNEKIQNDFIK 361
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  493 TMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKSFVEKVSqeqgthpKFQKPRqL 572
Cdd:cd14898    362 KMFRAKQGMYKEEGIEWPDVEF-FDNNQCIRDFEKPC---GLMDLISEESFNAWGNVKNLLVKIK-------KYLNGF-I 429
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  573 RDKADFCII--HYAGKVDYKADEWLMKNMDplndnvatllhqsadkftaelwkdeiqniqkvyffdsyavapQGPVemdr 650
Cdd:cd14898    430 NTKARDKIKvsHYAGDVEYDLRDFLDKNRE------------------------------------------KGQL---- 463
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  651 ivgldqvsgmgdLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGV 730
Cdd:cd14898    464 ------------LIFKNLLINDEGSKEDLVKYFKDSMNKLLNSINETQAKYIKCIRPNEECRPWCFDRDLVSKQLAECGI 531
                          650       660       670
                   ....*....|....*....|....*....|.
gi 1033370542  731 LEGIRICRQGFPNRIIFQEFRQRYEILTPNA 761
Cdd:cd14898    532 LETIRLSKQCFPQEIPKDRFEERYRILGITL 562
MYSc_Myo26 cd14887
class XXVI myosin, motor domain; These MyTH-FERM myosins are thought to be related to the ...
93-797 6.83e-95

class XXVI myosin, motor domain; These MyTH-FERM myosins are thought to be related to the other myosins that have a MyTH4 domain such as class III, VII, IX, X , XV, XVI, XVII, XX, XXII, XXV, and XXXIV. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276852  Cd Length: 725  Bit Score: 324.68  E-value: 6.83e-95
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYS--------GLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDRE 164
Cdd:cd14887      1 PNLLENLYQRYNKayinkenrNCIYTYTGTLLIAVNPYRFFNLYDRQWISRFDTEANSRLVPHPFGLAEFAYCRLVRDRR 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  165 DQSILCTGESGAGKTENTKKVIQYLAHVASSHKArkdhnippeypteAKQGELERQLLQANPILEAFGNAKTVKNDNSSR 244
Cdd:cd14887     81 SQSILISGESGAGKTETSKHVLTYLAAVSDRRHG-------------ADSQGLEARLLQSGPVLEAFGNAHTVLNANSSR 147
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  245 FGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLvgAGEHMKGELLLEPFNQYRFLSngylpipgqq 324
Cdd:cd14887    148 FGKMLLLHFTGRGKLTRASVATYLLANERVVRIPSDEFSFHIFYALC--NAAVAAATQKSSAGEGDPEST---------- 215
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  325 DKEIFHETMESMRIMGFSHEEIHcmlRMVSAVLQFGNIVFRKERNTDQASMPDNTA--------AQKLCHLL-------G 389
Cdd:cd14887    216 DLRRITAAMKTVGIGGGEQADIF---KLLAAILHLGNVEFTTDQEPETSKKRKLTSvsvgceetAADRSHSSevkclssG 292
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  390 MNVTEFTRAILT--------PRIKVGRDYV------------QKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDR 449
Cdd:cd14887    293 LKVTEASRKHLKtvarllglPPGVEGEEMLrlalvsrsvretRSFFDLDGAAAARDAACKNLYSRAFDAVVARINAGLQR 372
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  450 TKR-------------QGASFIGILDIAGFEIFQ---LNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFI- 512
Cdd:cd14887    373 SAKpsesdsdedtpstTGTQTIGILDLFGFEDLRnhsKNRLEQLCINYANERLHCFLLEQLILNEHMLYTQEGVFQNQDc 452
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  513 -DFGLDLQPCIDLIERPAN---------------------PPGVLALLDE------ECWFPKATDKSFVEKVSQEQGTHP 564
Cdd:cd14887    453 sAFPFSFPLASTLTSSPSStspfsptpsfrsssafatspsLPSSLSSLSSslssspPVWEGRDNSDLFYEKLNKNIINSA 532
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  565 KFQK--PRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLhQSADKFTaelwkdeiqniqkvyffdsyavap 642
Cdd:cd14887    533 KYKNitPALSRENLEFTVSHFACDVTYDARDFCRANREATSDELERLF-LACSTYT------------------------ 587
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  643 qgpvemdRIVGLDQVSGMGdlafgaSYKTKKgmfRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVL 722
Cdd:cd14887    588 -------RLVGSKKNSGVR------AISSRR---STLSAQFASQLQQVLKALQETSCHFIRCVKPNRVQEAGIFEDAYVH 651
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  723 DQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIpKGFMDGKQACERMIKALELDPNLFRIGQSKIFFR 797
Cdd:cd14887    652 RQLRCSGMSDLLRVMADGFPCRLPYVELWRRYETKLPMAL-REALTPKMFCKIVLMFLEINSNSYTFGKTKIFFR 725
MYSc_Myo24A cd14937
class XXIV A myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a ...
93-797 1.49e-89

class XXIV A myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a coiled-coil region in their C-terminal tail. The function of the class XXIV myosins remain elusive. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276897  Cd Length: 637  Bit Score: 306.56  E-value: 1.49e-89
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQivemYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14937      1 AEVLNMLALRYKKNYIYTIAEPMLISINPYQVIDVDINE----YKNKNTNELPPHVYSYAKDAMTDFINTKTNQSIIISG 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQ-YLAHVasshkaRKDHnippeypteakqgELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd14937     77 ESGSGKTEASKLVIKyYLSGV------KEDN-------------EISNTLWDSNFILEAFGNAKTLKNNNSSRYGKYIKI 137
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFHE 331
Cdd:cd14937    138 ELDEYQNIVSSSIEIFLLENIRVVSQEEEERGYHIFYQIFNGMSQELKNKYKIRSENEYKYIVNKNVVIPEIDDAKDFGN 217
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMvSAVLQFGNIVFR---KERNTDQASMPDNT--AAQKLCHLLGMNVTEFTRAILTPRIKV 406
Cdd:cd14937    218 LMISFDKMNMHDMKDDLFLTL-SGLLLLGNVEYQeieKGGKTNCSELDKNNleLVNEISNLLGINYENLKDCLVFTEKTI 296
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  407 GRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKrQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKL 486
Cdd:cd14937    297 ANQKIEIPLSVEESVSICKSISKDLYNKIFSYITKRINNFLNNNK-ELNNYIGILDIFGFEIFSKNSLEQLLINIANEEI 375
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  487 QQLFNHTMFVLEQEEYQREGIEWNFIDFGLDlQPCIDLIErpaNPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPKF 566
Cdd:cd14937    376 HSIYLYIVYEKETELYKAEDILIESVKYTTN-ESIIDLLR---GKTSIISILEDSCLGPVKNDESIVSVYTNKFSKHEKY 451
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  567 QKPRQLRDKaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDeiqniqkvyffdsyavapqgpV 646
Cdd:cd14937    452 ASTKKDINK-NFVIKHTVSDVTYTITNFISKNKDILPSNIVRLLKVSNNKLVRSLYED---------------------V 509
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  647 EMDRIVGLDQVsgmgdlafgASYKtkkgmfrtvgqlYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLR 726
Cdd:cd14937    510 EVSESLGRKNL---------ITFK------------YLKNLNNIISYLKSTNIYFIKCIKPNENKEKNNFNQKKVFPQLF 568
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542  727 CNGVLEGIRIcRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIKAlELDPNLFRIGQSKIFFR 797
Cdd:cd14937    569 SLSIIETLNI-SFFFQYKYTFDVFLSYFEYLDYSTSKDSSLTDKEKVSMILQN-TVDPDLYKVGKTMVFLK 637
MYSc_Myo16 cd14878
class XVI myosin, motor domain; These XVI type myosins are also known as Neuronal ...
93-797 1.06e-88

class XVI myosin, motor domain; These XVI type myosins are also known as Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 3/NYAP3. Myo16 is thought to play a regulatory role in cell cycle progression and has been recently implicated in Schizophrenia. Class XVI myosins are characterized by an N-terminal ankyrin repeat domain and some with chitin synthase domains that arose independently from the ones in the class XVII fungal myosins. They bind protein phosphatase 1 catalytic subunits 1alpha/PPP1CA and 1gamma/PPP1CC. Human Myo16 interacts with ACOT9, ARHGAP26 and PIK3R2 and with components of the WAVE1 complex, CYFIP1 and NCKAP1. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276844 [Multi-domain]  Cd Length: 656  Bit Score: 304.43  E-value: 1.06e-88
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYR---GKKRHEMPPHIYAISEAAYRSMLQDREDQSIL 169
Cdd:cd14878      1 SSLLYEIQKRFGNNQIYTFIGDILLLVNPYKELPIYSTMVSQLYLsssGQLCSSLPPHLFSCAERAFHQLFQERRPQCFI 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  170 CTGESGAGKTENTKKVIQYLAHVASSHKArkdhnippeypteakqgELERQLLQANPILEAFGNAKTVKNDNSSRFGKFI 249
Cdd:cd14878     81 LSGERGSGKTEASKQIMKHLTCRASSSRT-----------------TFDSRFKHVNCILEAFGHAKTTLNDLSSCFIKYF 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  250 RINF-DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGylpIPGQ----- 323
Cdd:cd14878    144 ELQFcERKKHLTGARIYTYMLEKSRLVSQPPGQSNFLIFYLLMDGLSAEEKYGLHLNNLCAHRYLNQT---MREDvstae 220
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  324 --QDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAILT 401
Cdd:cd14878    221 rsLNREKLAVLKQALNVVGFSSLEVENLFVILSAILHLGDIRFTALTEADSAFVSDLQLLEQVAGMLQVSTDELASALTT 300
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  402 PRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRAL---DRTKRQGASFIGILDIAGFEIFQLNSFEQLC 478
Cdd:cd14878    301 DIQYFKGDMIIRRHTIQIAEFYRDLLAKSLYSRLFSFLVNTVNCCLqsqDEQKSMQTLDIGILDIFGFEEFQKNEFEQLC 380
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  479 INYTNEKLQQLFNHTMFVLEQEEYQREGIewnfidfgldlqpCIDLIERPAN-----------PPGVLALLDEECWFPKA 547
Cdd:cd14878    381 VNMTNEKMHHYINEVLFLQEQTECVQEGV-------------TMETAYSPGNqtgvldfffqkPSGFLSLLDEESQMIWS 447
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  548 TDKSFVEKVS---QEQGTHPKFQKPRQ------LRDK-ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSadkf 617
Cdd:cd14878    448 VEPNLPKKLQsllESSNTNAVYSPMKDgngnvaLKDQgTAFTVMHYAGRVMYEIVGAIEKNKDSLSQNLLFVMKTS---- 523
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  618 taelwkdeiQNIQKVYFFDSYAVapqgpvemdrivgldqvsgmgdlafgasyktkkgmfrTVGQLYKESLSKLMSTLRNT 697
Cdd:cd14878    524 ---------ENVVINHLFQSKLV-------------------------------------TIASQLRKSLADIIGKLQKC 557
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  698 NPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAI-PKGFMDGKQACERM 776
Cdd:cd14878    558 TPHFIHCIKPNNSKLPDTFDNFYVSAQLQYIGVLEMVKIFRYGYPVRLSFSDFLSRYKPLADTLLgEKKKQSAEERCRLV 637
                          730       740
                   ....*....|....*....|.
gi 1033370542  777 IKALELDPnlFRIGQSKIFFR 797
Cdd:cd14878    638 LQQCKLQG--WQMGVRKVFLK 656
MYSc_Myo17 cd14879
class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase ...
90-796 1.12e-85

class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase uses its motor domain to tether its vesicular cargo to peripheral actin. It works in opposition to dynein, contributing to the retention of Mcs1 vesicles at the site of cell growth and increasing vesicle fusion necessary for polarized growth. Class 17 myosins consist of a N-terminal myosin motor domain with Cyt-b5, chitin synthase 2, and a DEK_C domains at it C-terminus. The chitin synthase region contains several transmembrane domains by which myosin 17 is thought to bind secretory vesicles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276845 [Multi-domain]  Cd Length: 647  Bit Score: 295.23  E-value: 1.12e-85
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   90 LNEASVLHNLKDRYYSGLIYTY---SGLfcVVINPYKNLPIYTEQIVEMYR-------GKKRHEMPPHIYAISEAAYRSM 159
Cdd:cd14879      1 PSDDAITSHLASRFRSDLPYTRlgsSAL--VAVNPYKYLSSNSDASLGEYGseyydttSGSKEPLPPHAYDLAARAYLRM 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  160 LQDREDQSILCTGESGAGKTENTKKVIQYLAHVaSSHKarkdhnippeyPTEAKQGElerQLLQANPILEAFGNAKTVKN 239
Cdd:cd14879     79 RRRSEDQAVVFLGETGSGKSESRRLLLRQLLRL-SSHS-----------KKGTKLSS---QISAAEFVLDSFGNAKTLTN 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  240 DNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFL--SNGY 317
Cdd:cd14879    144 PNASRFGRYTELQFNERGRLIGAKVLDYRLERSRVASVPTGERNFHVFYYLLAGASPEERQHLGLDDPSDYALLasYGCH 223
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  318 -LP-IPGQQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFR--KERNTDQASMpDNTAA-QKLCHLLGMNV 392
Cdd:cd14879    224 pLPlGPGSDDAEGFQELKTALKTLGFKRKHVAQICQLLAAILHLGNLEFTydHEGGEESAVV-KNTDVlDIVAAFLGVSP 302
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  393 TEFtRAILTPRIK-VGRD----YVQKAQTKEQADfaveALAKATYERLFRWLVHRINRALDRTKRQGASFIGILDIAGFE 467
Cdd:cd14879    303 EDL-ETSLTYKTKlVRKElctvFLDPEGAAAQRD----ELARTLYSLLFAWVVETINQKLCAPEDDFATFISLLDFPGFQ 377
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  468 ifQL-----NSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPanPPGVLALLDEEC 542
Cdd:cd14879    378 --NRsstggNSLDQFCVNFANERLHNYVLRSFFERKAEELEAEGVSVPATSY-FDNSDCVRLLRGK--PGGLLGILDDQT 452
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  543 -WFPKATDKSFVEKVSQEQGTHPKF---QKPRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLndnvatllhqSADkft 618
Cdd:cd14879    453 rRMPKKTDEQMLEALRKRFGNHSSFiavGNFATRSGSASFTVNHYAGEVTYSVEGFLERNGDVL----------SPD--- 519
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  619 aelwkdeiqniqkvyffdsyavapqgpvemdrIVGLdqvsgmgdlafgasyktkkgmFRTVGQLyKESLSKLMSTLRNTN 698
Cdd:cd14879    520 --------------------------------FVNL---------------------LRGATQL-NAALSELLDTLDRTR 545
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  699 PNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPnaipkgFMDGKQACERMIK 778
Cdd:cd14879    546 LWSVFCIRPNDSQLPNSFDKRRVKAQIRSLGLPELAARLRVEYVVSLEHAEFCERYKSTLR------GSAAERIRQCARA 619
                          730
                   ....*....|....*...
gi 1033370542  779 ALELDPNLFRIGQSKIFF 796
Cdd:cd14879    620 NGWWEGRDYVLGNTKVFL 637
MYSc_Myo23 cd14884
class XXIII myosin, motor domain; These myosins are predicted to have a neck region with 1-2 ...
93-749 8.29e-78

class XXIII myosin, motor domain; These myosins are predicted to have a neck region with 1-2 IQ motifs and a single MyTH4 domain in its C-terminal tail. The lack of a FERM domain here is odd since MyTH4 domains are usually found alongside FERM domains where they bind to microtubules. At any rate these Class XXIII myosins are still proposed to function in the apicomplexan microtubule cytoskeleton. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276850 [Multi-domain]  Cd Length: 685  Bit Score: 273.32  E-value: 8.29e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHE-------MPPHIYAISEAAYRSMLQDRE 164
Cdd:cd14884      1 PNVLQNLKNRYLKNKIYTFHASLLLALNPYKPLKeLYDQDVMNVYLHKKSNSaasaapfPKAHIYDIANMAYKNMRGKLK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  165 DQSILCTGESGAGKTENTKKVIQYLAHVAsshkarkdhnippeypTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSR 244
Cdd:cd14884     81 RQTIVVSGHSGSGKTENCKFLFKYFHYIQ----------------TDSQMTERIDKLIYINNILESMSNATTIKNNNSSR 144
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  245 FGKFIRINFD---------VAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVG-AGEHMKGELLLEPFNQYRFLS 314
Cdd:cd14884    145 CGRINLLIFEeventqknmFNGCFRNIKIKILLLEINRCIAHNFGERNFHVFYQVLRGlSDEDLARRNLVRNCGVYGLLN 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  315 N----------GYLPIPG----------QQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRkerntdqas 374
Cdd:cd14884    225 PdeshqkrsvkGTLRLGSdsldpseeekAKDEKNFVALLHGLHYIKYDERQINEFFDIIAGILHLGNRAYK--------- 295
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  375 mpdntaaqKLCHLLGMNVTEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQG 454
Cdd:cd14884    296 --------AAAECLQIEEEDLENVIKYKNIRVSHEVIRTERRKENATSTRDTLIKFIYKKLFNKIIEDINRNVLKCKEKD 367
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  455 A-----------SFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCID 523
Cdd:cd14884    368 EsdnediysineAIISILDIYGFEELSGNDFDQLCINLANEKLNNYYINNEIEKEKRIYARENIICCSDVAP-SYSDTLI 446
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  524 LIERpanppgVLALLDE-----ECWFPKATDKSFV-----EKVSQEQGTH------PKFQK---PRQLRDKADFCIIHYA 584
Cdd:cd14884    447 FIAK------IFRRLDDitklkNQGQKKTDDHFFRyllnnERQQQLEGKVsygfvlNHDADgtaKKQNIKKNIFFIRHYA 520
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  585 GKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAElwkdeiqniqkvyffdsyavapqgpvemdrivgldqvsgmgdla 664
Cdd:cd14884    521 GLVTYRINNWIDKNSDKIETSIETLISCSSNRFLRE-------------------------------------------- 556
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  665 fgASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNR 744
Cdd:cd14884    557 --ANNGGNKGNFLSVSKKYIKELDNLFTQLQSTDMYYIRCFLPNAKMLPNTFKRLLVYRQLKQCGSNEMIKILNRGLSHK 634

                   ....*
gi 1033370542  745 IIFQE 749
Cdd:cd14884    635 IPKKE 639
MYSc_Myo44 cd14905
class XLIV myosin, motor domain; There is little known about the function of the myosin XLIV ...
94-797 2.63e-75

class XLIV myosin, motor domain; There is little known about the function of the myosin XLIV class. Members here include cellular slime mold Polysphondylium and soil-living amoeba Dictyostelium. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276870  Cd Length: 673  Bit Score: 265.80  E-value: 2.63e-75
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYrgKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14905      2 TLINIIQARYKKEIIYTYIGPILVSVNPLRYLPfLHSQELVRNY--NQRRGLPPHLFALAAKAISDMQDFRRDQLIFIGG 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAhvaSSHKARKDHnippeypteakqgeLERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 252
Cdd:cd14905     80 ESGSGKSENTKIIIQYLL---TTDLSRSKY--------------LRDYILESGIILESFGHASTDSNHNSSRWGKYFEMF 142
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  253 FDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSN-GYLPIPGQQDKEIFHE 331
Cdd:cd14905    143 YSLYGEIQGAKLYSYFLDENRVTYQNKGERNFHIFYQFLKGITDEEKAAYQLGDINSYHYLNQgGSISVESIDDNRVFDR 222
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  332 TMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNtdQASMPDNTAAQKLCHLLGMNVTEFTRAILTPRIKVGRDYV 411
Cdd:cd14905    223 LKMSFVFFDFPSEKIDLIFKTLSFIIILGNVTFFQKNG--KTEVKDRTLIESLSHNITFDSTKLENILISDRSMPVNEAV 300
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  412 QKAqtkeqadfavEALAKATYERLFRWLVHRINRALDRTkrQGASFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFN 491
Cdd:cd14905    301 ENR----------DSLARSLYSALFHWIIDFLNSKLKPT--QYSHTLGILDLFGQESSQLNGYEQFSINFLEERLQQIYL 368
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  492 HTMFVLEQEEYQREGIEW-NFIDFGlDLQPCIDLIERpanppgVLALLDEECWFPKATDKSFVEKVSQEQGTHPKF-QKP 569
Cdd:cd14905    369 QTVLKQEQREYQTERIPWmTPISFK-DNEESVEMMEK------IINLLDQESKNINSSDQIFLEKLQNFLSRHHLFgKKP 441
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  570 RQlrdkadFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTaeLWKDEIQNIQKVY-----FFDSYAVAPQG 644
Cdd:cd14905    442 NK------FGIEHYFGQFYYDVRGFIIKNRDEILQRTNVLHKNSITKYL--FSRDGVFNINATVaelnqMFDAKNTAKKS 513
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  645 PVEMDRIV------GLDQVSGMGDLAFGASYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPN--FVRCIIPNHEKRAGKL 716
Cdd:cd14905    514 PLSIVKVLlscgsnNPNNVNNPNNNSGGGGGGGNSGGGSGSGGSTYTTYSSTNKAINNSNCDfhFIRCIKPNSKKTHLTF 593
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  717 EPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAipKGFMD-GKQACERMIKALELDPNLFRIGQSKIF 795
Cdd:cd14905    594 DVKSVNEQIKSLCLLETTRIQRFGYTIHYNNKIFFDRFSFFFQNQ--RNFQNlFEKLKENDINIDSILPPPIQVGNTKIF 671

                   ..
gi 1033370542  796 FR 797
Cdd:cd14905    672 LR 673
MYSc_Myo20 cd14881
class XX myosin, motor domain; These class 20 myosins are primarily insect myosins with such ...
94-784 2.11e-72

class XX myosin, motor domain; These class 20 myosins are primarily insect myosins with such members as Drosophila, Daphnia, and mosquitoes. These myosins contain a single IQ motif in the neck region. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276847 [Multi-domain]  Cd Length: 633  Bit Score: 256.19  E-value: 2.11e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYknlpiyteqiveMYRGKKRH-------EMPPHIYAISEAAYRSMLQDREDQ 166
Cdd:cd14881      2 AVMKCLQARFYAKEFFTNVGPILLSVNPY------------RDVGNPLTltstrssPLAPQLLKVVQEAVRQQSETGYPQ 69
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  167 SILCTGESGAGKTENTKKVIQYLAHVASSHkarkdhnipPEypTEAKqgeleRQLLQANPILEAFGNAKTVKNDNSSRFG 246
Cdd:cd14881     70 AIILSGTSGSGKTYASMLLLRQLFDVAGGG---------PE--TDAF-----KHLAAAFTVLRSLGSAKTATNSESSRIG 133
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  247 KFIRINFdVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFN--QYRFLSNGYLPIPGQQ 324
Cdd:cd14881    134 HFIEVQV-TDGALYRTKIHCYFLDQTRVIRPLPGEKNYHIFYQMLAGLSQEERVKLHLDGYSpaNLRYLSHGDTRQNEAE 212
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  325 DKEIFHETMESMRIMGFSHEEIhcmLRMVSAVLQFGNIVFrKERNTDQASMPDNTAAQKLCHLLGMNVTEFTRAiLTPRI 404
Cdd:cd14881    213 DAARFQAWKACLGILGIPFLDV---VRVLAAVLLLGNVQF-IDGGGLEVDVKGETELKSVAALLGVSGAALFRG-LTTRT 287
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  405 K-VGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRaldrTKRQGAS--------FIGILDIAGFEIFQLNSFE 475
Cdd:cd14881    288 HnARGQLVKSVCDANMSNMTRDALAKALYCRTVATIVRRANS----LKRLGSTlgthatdgFIGILDMFGFEDPKPSQLE 363
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  476 QLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNF-IDFgLDLQPCIDLIErpANPPGVLALLDEECwFPKATDKSFVE 554
Cdd:cd14881    364 HLCINLCAETMQHFYNTHIFKSSIESCRDEGIQCEVeVDY-VDNVPCIDLIS--SLRTGLLSMLDVEC-SPRGTAESYVA 439
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  555 KVSQEQGTHPKFQKPRQLRDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQsadkftaelwkdeiQNIQkvyf 634
Cdd:cd14881    440 KIKVQHRQNPRLFEAKPQDDRM-FGIRHFAGRVVYDASDFLDTNRDVVPDDLVAVFYK--------------QNCN---- 500
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  635 fdsyavapqgpvemdrivgldqvsgmgdlaFGasyktkkgmFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAG 714
Cdd:cd14881    501 ------------------------------FG---------FATHTQDFHTRLDNLLRTLVHARPHFVRCIRSNTTETPN 541
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1033370542  715 KLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAIPKGFMDGKQACERMIK--ALELDP 784
Cdd:cd14881    542 HFDRGTVVRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFRLLRRVEEKALEDCALILqfLEAQPP 613
MYSc_Myo12 cd14874
class XXXIII myosin, motor domain; Little is known about the XXXIII class of myosins. They ...
93-762 6.33e-66

class XXXIII myosin, motor domain; Little is known about the XXXIII class of myosins. They are found predominately in nematodes. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276841 [Multi-domain]  Cd Length: 628  Bit Score: 236.69  E-value: 6.33e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   93 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYrgkkrhemppHIYAISEAAYRSMLQDRED-QSILCT 171
Cdd:cd14874      1 AGIAQNLHERFKKGQTYTKASNVLVFVNDFNKLSIQDQLVIKKC----------HISGVAENALDRIKSMSSNaESIVFG 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  172 GESGAGKTENTKKVIQYLAhvasshkarkdhnippeypTEAKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 251
Cdd:cd14874     71 GESGSGKSYNAFQVFKYLT-------------------SQPKSKVTTKHSSAIESVFKSFGCAKTLKNDEATRFGCSIDL 131
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  252 NFDvAGYIVGANIE-TYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDKEIFH 330
Cdd:cd14874    132 LYK-RNVLTGLNLKyTVPLEVPRVISQKPGERNFNVFYEVYHGLNDEMKAKFGIKGLQKFFYINQGNSTENIQSDVNHFK 210
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  331 ETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKERNTD---QASMPDNTAAQK-LCHLLGMNVTEFTrAILTPRIKV 406
Cdd:cd14874    211 HLEDALHVLGFSDDHCISIYKIISTILHIGNIYFRTKRNPNveqDVVEIGNMSEVKwVAFLLEVDFDQLV-NFLLPKSED 289
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  407 GrdyvqKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKRQGAsfIGILDIAGFEIFQLNSFEQLCINYTNEKL 486
Cdd:cd14874    290 G-----TTIDLNAALDNRDSFAMLIYEELFKWVLNRIGLHLKCPLHTGV--ISILDHYGFEKYNNNGVEEFLINSVNERI 362
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  487 QQLFNHTMFVLEQEEYQREGIEWNF-IDFGLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKSFVEKVSQEQGTHPK 565
Cdd:cd14874    363 ENLFVKHSFHDQLVDYAKDGISVDYkVPNSIENGKTVELLFK--KPYGLLPLLTDECKFPKGSHESYLEHCNLNHTDRSS 440
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  566 FQKPRQlRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEIQNIQkvyffdsyavapqgp 645
Cdd:cd14874    441 YGKARN-KERLEFGVRHCIGTTWYNVTDFFSRNKRIISLSAVQLLRSSKNPIIGLLFESYSSNTS--------------- 504
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  646 vemDRIVgldqvsgmgdlafgasyktkkgmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQL 725
Cdd:cd14874    505 ---DMIV-------------------------SQAQFILRGAQEIADKINGSHAHFVRCIKSNNERQPKKFDIPLVNRQI 556
                          650       660       670
                   ....*....|....*....|....*....|....*..
gi 1033370542  726 RCNGVLEGIRICRQGFPNRIIFQEFRQRYEILTPNAI 762
Cdd:cd14874    557 KNLLLAELLSFRIKGYPVKISKTTFARQYRCLLPGDI 593
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
115-258 5.78e-62

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 209.51  E-value: 5.78e-62
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  115 FCVVINPYKNLPIYTEQIV-EMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVA 193
Cdd:cd01363      1 VLVRVNPFKELPIYRDSKIiVFYRGFRRSESQPHVFAIADPAYQSMLDGYNNQSIFAYGESGAGKTETMKGVIPYLASVA 80
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542  194 SSHKARKDHNIpPEYPTEaKQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGY 258
Cdd:cd01363     81 FNGINKGETEG-WVYLTE-ITVTLEDQILQANPILEAFGNAKTTRNENSSRFGKFIEILLDIAGF 143
MYSc_Myo32 cd14893
class XXXII myosin, motor domain; Class XXXII myosins do not contain any IQ motifs, but ...
96-796 1.91e-61

class XXXII myosin, motor domain; Class XXXII myosins do not contain any IQ motifs, but possess tandem MyTH4 and FERM domains. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276858  Cd Length: 741  Bit Score: 226.01  E-value: 1.91e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   96 LHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYT----------EQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDRED 165
Cdd:cd14893      4 LYTLRARYRMEQVYTWVDRVLVGVNPVTPLPIYTpdhmqaynksREQTPLYEKDTVNDAPPHVFALAQNALRCMQDAGED 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  166 QSILCTGESGAGKTENTKKVIQYLAHVASSHKARKDhnippeypTEAKQGELE---RQLLQANPILEAFGNAKTVKNDNS 242
Cdd:cd14893     84 QAVILLGGMGAGKSEAAKLIVQYLCEIGDETEPRPD--------SEGASGVLHpigQQILHAFTILEAFGNAATRQNRNS 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  243 SRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAgEH---MKGELLL-EPFNQYRFLSNGYl 318
Cdd:cd14893    156 SRFAKMISVEFSKHGHVIGGGFTTHYFEKSRVIDCRSHERNFHVFYQVLAGV-QHdptLRDSLEMnKCVNEFVMLKQAD- 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  319 PIPGQ--QDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVF-------------RKERNTDQASMPDNTAAQK 383
Cdd:cd14893    234 PLATNfaLDARDYRDLMSSFSALRIRKNQRVEIVRIVAALLHLGNVDFvpdpeggksvggaNSTTVSDAQSCALKDPAQI 313
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  384 L--CHLLGMNVTEFTRAILTPRI--KVGRDYVQ--KAQTKEQADFAVEALAKATYERLFRWLVHRINRAL----DRTKRQ 453
Cdd:cd14893    314 LlaAKLLEVEPVVLDNYFRTRQFfsKDGNKTVSslKVVTVHQARKARDTFVRSLYESLFNFLVETLNGILggifDRYEKS 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  454 G----ASFIGILDIAGFEIF--QLNSFEQLCINYTNEKLQQLF-NHTMFV----LEQEEYQREG--IEWNFIDFGLDLQP 520
Cdd:cd14893    394 NivinSQGVHVLDMVGFENLtpSQNSFDQLCFNYWSEKVHHFYvQNTLAInfsfLEDESQQVENrlTVNSNVDITSEQEK 473
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  521 CIDLIERPanPPGVLALLDEECWFPKATDKSFVEK---VSQEQG-----------THPKFQKPRQLRdkADFCIIHYAGK 586
Cdd:cd14893    474 CLQLFEDK--PFGIFDLLTENCKVRLPNDEDFVNKlfsGNEAVGglsrpnmgadtTNEYLAPSKDWR--LLFIVQHHCGK 549
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  587 VDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELWKDEIQNIQkvyffdSYAVAPQgpVEMDRivgldQVSGMGDLAFG 666
Cdd:cd14893    550 VTYNGKGLSSKNMLSISSTCAAIMQSSKNAVLHAVGAAQMAAAS------SEKAAKQ--TEERG-----STSSKFRKSAS 616
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  667 ASYKTKKGMFRTVGQLYKESlSKLMSTLRNTNPNFVRCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRII 746
Cdd:cd14893    617 SARESKNITDSAATDVYNQA-DALLHALNHTGKNFLVCIKPNETLEEGVFDSAYVMKQIRMNHLVELMQASRSIFTVHLT 695
                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1033370542  747 FQEFRQRYeiltpnaipKGFMDGKQACERMIKALE----LDPNLFRIGQSKIFF 796
Cdd:cd14893    696 YGHFFRRY---------KNVCGHRGTLESLLRSLSaigvLEEEKFVVGKTKVYL 740
MYSc_Myo21 cd14882
class XXI myosin, motor domain; The myosins here are comprised of insects. Leishmania class ...
94-757 1.85e-60

class XXI myosin, motor domain; The myosins here are comprised of insects. Leishmania class XXI myosins do not group with them. Myo21, unlike other myosin proteins, contains UBA-like protein domains and has no structural or functional relationship with the myosins present in other organisms possessing cilia or flagella. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. They have diverse tails with IQ, WW, PX, and Tub domains. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276848  Cd Length: 642  Bit Score: 220.77  E-value: 1.85e-60
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTGE 173
Cdd:cd14882      2 NILEELRHRYLMGESYTFIGDILLSLNPNEIKQEYPQEFHAKYRCKSRSDNAPHIFSVADSAYQDMLHHEEPQHIILSGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  174 SGAGKTENTKKVIQYLAhvasshkarkdhnippeYPTEAKQGELERqLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 253
Cdd:cd14882     82 SYSGKTTNARLLIKHLC-----------------YLGDGNRGATGR-VESSIKAILALVNAGTPLNADSTRCILQYQLTF 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  254 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVG--AGEHMKgELLLEPFNQYRflsngYLPIPG--------- 322
Cdd:cd14882    144 GSTGKMSGAIFWMYQLEKLRVSTTDGNQSNFHIFYYFYDFieAQNRLK-EYNLKAGRNYR-----YLRIPPevppsklky 217
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  323 -----QQDKEIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNIVFRKerNTDQASMPDNTAAQKLCHLLGMNVTEFTR 397
Cdd:cd14882    218 rrddpEGNVERYKEFEEILKDLDFNEEQLETVRKVLAAILNLGEIRFRQ--NGGYAELENTEIASRVAELLRLDEKKFMW 295
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  398 AILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKrqgASF-----IGILDIAGFEIFQLN 472
Cdd:cd14882    296 ALTNYCLIKGGSAERRKHTTEEARDARDVLASTLYSRLVDWIINRINMKMSFPR---AVFgdkysISIHDMFGFECFHRN 372
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  473 SFEQLCINYTNEKLQQLFNHTMFV---LEQEEYQREGIEWNFIDFGLDLQPCIdlierpANPPGVLALLDEECwfPKATD 549
Cdd:cd14882    373 RLEQLMVNTLNEQMQYHYNQRIFIsemLEMEEEDIPTINLRFYDNKTAVDQLM------TKPDGLFYIIDDAS--RSCQD 444
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  550 KSFV-EKVSQEQGTHPKfqkprqLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADkftaelwkdeiqN 628
Cdd:cd14882    445 QNYImDRIKEKHSQFVK------KHSAHEFSVAHYTGRIIYDAREFADKNRDFVPPEMIETMRSSLD------------E 506
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  629 IQKVYFFDSyavapqgpvemdrivgldQVSGMgdlafgasyKTKKGMFRTVgqlykeSLSKLMSTLRNTNP---NFVRCI 705
Cdd:cd14882    507 SVKLMFTNS------------------QVRNM---------RTLAATFRAT------SLELLKMLSIGANSggtHFVRCI 553
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1033370542  706 IPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEIL 757
Cdd:cd14882    554 RSDLEYKPRGFHSEVVRQQMRALAVLDTAKARQKGFSYRIPFQEFLRRYQFL 605
MYSc_Myo24B cd14938
class XXIV B myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a ...
94-795 1.07e-58

class XXIV B myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a coiled-coil region in their C-terminal tail. The functions of these myosins remain elusive. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276898 [Multi-domain]  Cd Length: 713  Bit Score: 217.40  E-value: 1.07e-58
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   94 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYR-GKKRHEMPPHIYAISEAAYRSMLQDREDQSILCTG 172
Cdd:cd14938      2 SVLYHLKERFKNNKFYTKMGPLLIFINPKINNNINNEETIEKYKcIDCIEDLSLNEYHVVHNALKNLNELKRNQSIIISG 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  173 ESGAGKTENTKKVIQYLAHVA---SSHKARKDHNIPPEYPTEAK---QGELERQLLQANPILEAFGNAKTVKNDNSSRFG 246
Cdd:cd14938     82 ESGSGKSEIAKNIINFIAYQVkgsRRLPTNLNDQEEDNIHNEENtdyQFNMSEMLKHVNVVMEAFGNAKTVKNNNSSRFS 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  247 KFIRINFDvAGYIVGANIETYLLEKSRAIRQAKDERTFHIFYQLLVGAGEHMKGELLLEPFNQYRFLSNGYLPIPGQQDK 326
Cdd:cd14938    162 KFCTIHIE-NEEIKSFHIKKFLLDKERLINRKANENSFNIFYYIINGSSDKFKKMYFLKNIENYSMLNNEKGFEKFSDYS 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  327 EIFHETMESMRIMGFSHEEIHCMLRMVSAVLQFGNI----VFRKE----------------------RNTDQASMPDNTA 380
Cdd:cd14938    241 GKILELLKSLNYIFDDDKEIDFIFSVLSALLLLGNTeivkAFRKKsllmgknqcgqninyetilselENSEDIGLDENVK 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  381 AQKL-CHLLGMNVTEFTRAILTPRIkVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINRALDRTKR--QGASF 457
Cdd:cd14938    321 NLLLaCKLLSFDIETFVKYFTTNYI-FNDSILIKVHNETKIQKKLENFIKTCYEELFNWIIYKINEKCTQLQNinINTNY 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  458 IGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANppGVLAL 537
Cdd:cd14938    400 INVLDMAYFENSKDNSLEQLLINTTNEEIIKIKNDCLYKKRVLSYNEDGIFCEYNSENIDNEPLYNLLVGPTE--GSLFS 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  538 LDEECWFPKATDKS-FVEKVSQEQGTHPKF-QKPRQLRDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSAD 615
Cdd:cd14938    478 LLENVSTKTIFDKSnLHSSIIRKFSRNSKYiKKDDITGNKKTFVITHSCGDIIYNAENFVEKNIDILTNRFIDMVKQSEN 557
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  616 KFtaelwkdeIQNIQKVYFFDSYAvapqGPVEMDRIVGLDQVSGMgdlaFGASYKTKKGMFRTvgqLYKESLSKLMSTLR 695
Cdd:cd14938    558 EY--------MRQFCMFYNYDNSG----NIVEEKRRYSIQSALKL----FKRRYDTKNQMAVS---LLRNNLTELEKLQE 618
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  696 NTNPNFVRCIIPNHEKRA-GKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIIFQEFRQRYEIltPNAipkgfmDGKQACE 774
Cdd:cd14938    619 TTFCHFIVCMKPNESKRElCSFDANIVLRQVRNFSIVEASQLKVGYYPHKFTLNEFLSIFDI--KNE------DLKEKVE 690
                          730       740
                   ....*....|....*....|.
gi 1033370542  775 RMIKALELDPNLFRIGQSKIF 795
Cdd:cd14938    691 ALIKSYQISNYEWMIGNNMIF 711
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
896-1713 4.71e-36

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 150.25  E-value: 4.71e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  896 KTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRaRLAARKQELEDILheLESRVEEEEERCQQLQGDKKKMQ 975
Cdd:COG1196    176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQ-ELKAELRELELAL--LLAKLKELRKELEELEEELSRLE 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  976 QHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLsklr 1055
Cdd:COG1196    253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEEL---- 328
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1056 nkyeavmadmEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAv 1135
Cdd:COG1196    329 ----------KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN- 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1136 lkSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKV 1215
Cdd:COG1196    398 --ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1216 hEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEG------ENAEMQKEVKL---------LQAAKLESEQ-- 1278
Cdd:COG1196    476 -LQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGvygpvaELIKVKEKYETaleaalgnrLQAVVVENEEva 554
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1279 ------RRKKLEGQV--------QELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTE--SKTIKLAKDLA----- 1337
Cdd:COG1196    555 kkaiefLKENKAGRAtflpldriKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTlvVDDLEQARRLArklri 634
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1338 -----TVESHLQDTQELLQEETRQK---LNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEd 1409
Cdd:COG1196    635 kyrivTLDGDLVEPSGSITGGSRNKrssLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE- 713
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1410 agvaeaIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLI 1489
Cdd:COG1196    714 ------LERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1490 SARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQE 1569
Cdd:COG1196    788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1570 MRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKLLSKQVR-ELEAELDAERKQRAQALAGRKKL 1648
Cdd:COG1196    868 LEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERlEVELPELEEELEEEYEDTLETEL 947
                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542 1649 ELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEI--FIQSRESEKKLKNLEA 1713
Cdd:COG1196    948 EREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLleVIEELDKEKRERFKET 1014
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1044-1891 6.79e-36

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 149.48  E-value: 6.79e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1044 EEEKVKSLSKLR------NKYEAVMADMEDRLKKEEKGRQELEKLKrKLDGEAGDLQEQVA-----ELQQQLEELRQALA 1112
Cdd:COG1196    171 KERKEEAERKLErteenlERLEDLLEELEKQLEKLERQAEKAERYQ-ELKAELRELELALLlaklkELRKELEELEEELS 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1113 RKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQ 1192
Cdd:COG1196    250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1193 ELRSKREQEVTELKKTIEEEvkvheaqvldmrqrhTSALEELSEQLEQSRRfkiNLEKTKQALEGENAEMQKEVKLLQAA 1272
Cdd:COG1196    330 EKIEALKEELEERETLLEEL---------------EQLLAELEEAKEELEE---KLSALLEELEELFEALREELAELEAE 391
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1273 KLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQE 1352
Cdd:COG1196    392 LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1353 ETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKAnfsrQMQSLQQQVMETKKKLEE----DAGVAEAIEEArrrAAKDLE 1428
Cdd:COG1196    472 LQEELQRLEKELSSLEARLDRLEAEQRASQGVRA----VLEALESGLPGVYGPVAElikvKEKYETALEAA---LGNRLQ 544
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1429 SLSVRYEERVQACDKLEKG--------------RTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARya 1494
Cdd:COG1196    545 AVVVENEEVAKKAIEFLKEnkagratflpldriKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDL-- 622
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1495 eERDRAEADAREKETKVLSL-----------------SRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELE 1557
Cdd:COG1196    623 -EQARRLARKLRIKYRIVTLdgdlvepsgsitggsrnKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLE 701
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1558 RFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKL------LSKQVRELEAEL 1631
Cdd:COG1196    702 DLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELeeelesLEEALAKLKEEI 781
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1632 DAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNL 1711
Cdd:COG1196    782 EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1712 EAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIgqleeeldeeqsnmELLNDRYRKLSMQ 1791
Cdd:COG1196    862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL--------------EELEAKLERLEVE 927
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1792 VETLTTELGAERSFSQKTEnARQQLERQNKDLRAkLGEMDSSVKSKYKMAIATLESKVAQLEEQLEqesrerilsgklvr 1871
Cdd:COG1196    928 LPELEEELEEEYEDTLETE-LEREIERLEEEIEA-LGPVNLRAIEEYEEVEERYEELKSQREDLEE-------------- 991
                          890       900
                   ....*....|....*....|
gi 1033370542 1872 rAEKKLKEVILQVDEERRNA 1891
Cdd:COG1196    992 -AKEKLLEVIEELDKEKRER 1010
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
994-1890 8.66e-36

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 149.44  E-value: 8.66e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  994 KLQLEKVSTEAKLKKMEEDLLVLEDqnskLHKERKLMEERLSeftshmaEEEEKVKSLSKLRNKYEAVMADME-DRLKKE 1072
Cdd:TIGR02168  169 KYKERRKETERKLERTRENLDRLED----ILNELERQLKSLE-------RQAEKAERYKELKAELRELELALLvLRLEEL 237
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1073 EKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQED 1152
Cdd:TIGR02168  238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1153 MESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVldmrqrhtSALE 1232
Cdd:TIGR02168  318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR--------SKVA 389
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1233 ELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVkllqaakleSEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQ 1312
Cdd:TIGR02168  390 QLELQIASLNNEIERLEARLERLEDRRERLQQEI---------EELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1313 NELDGVSGTLGSTESKTIKLAKDLAtvesHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAA---KANFS 1389
Cdd:TIGR02168  461 EALEELREELEEAEQALDAAERELA----QLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvDEGYE 536
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1390 RQMQ-----SLQQQVMETKKK------------------LEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEK 1446
Cdd:TIGR02168  537 AAIEaalggRLQAVVVENLNAakkaiaflkqnelgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK 616
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1447 GrtrLQQELDDVTVALDQQrqvvSALE-KKQKKFDQML--AEEKLISARYAEERDRAEADAreketKVLSLSRALEEALE 1523
Cdd:TIGR02168  617 A---LSYLLGGVLVVDDLD----NALElAKKLRPGYRIvtLDGDLVRPGGVITGGSAKTNS-----SILERRREIEELEE 684
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1524 TREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHE 1603
Cdd:TIGR02168  685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1604 relqnrddanddkkkllskqvrELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANkgrdeagKQLRKLQAQMKEL 1683
Cdd:TIGR02168  765 ----------------------ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR-------EALDELRAELTLL 815
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1684 WREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELAngnsgksALLDEKRHLEAR 1763
Cdd:TIGR02168  816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE-------ALLNERASLEEA 888
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1764 IGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSSVKSKYKMAIA 1843
Cdd:TIGR02168  889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1033370542 1844 TLESKVAQLEEQL---------------EQESRERILSGKL--VRRAEKKLKEVILQVDEERRN 1890
Cdd:TIGR02168  969 EARRRLKRLENKIkelgpvnlaaieeyeELKERYDFLTAQKedLTEAKETLEEAIEEIDREARE 1032
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
993-1799 1.35e-34

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 145.24  E-value: 1.35e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  993 QKLQLEKVSTEAKLKKMEEDLLVLED----QNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDR 1068
Cdd:COG1196    189 ERLEDLLEELEKQLEKLERQAEKAERyqelKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE 268
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1069 LKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAE 1148
Cdd:COG1196    269 IEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1149 LQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHT 1228
Cdd:COG1196    349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1229 SALEELSEQLEQSRRFKINLEKTKQALE---GENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELV 1305
Cdd:COG1196    429 ELEAELEELQTELEELNEELEELEEQLEelrDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1306 ERLVKLqNELDGVSGTLGSTESK-----TIKLAKDL-ATVESHLQDTQELLQEETRQKLN-----LSSRVRQLEEEKAAM 1374
Cdd:COG1196    509 ALESGL-PGVYGPVAELIKVKEKyetalEAALGNRLqAVVVENEEVAKKAIEFLKENKAGratflPLDRIKPLRSLKSDA 587
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1375 LEQLEEEEAAKANFSRQMQSLQQQVMetkkkleEDAGVAEAIEEARRRAAKdleslsVRYEERVQACD--KLEKGRTrlq 1452
Cdd:COG1196    588 APGFLGLASDLIDFDPKYEPAVRFVL-------GDTLVVDDLEQARRLARK------LRIKYRIVTLDgdLVEPSGS--- 651
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1453 qelddVTVALDQQRQVVSALEKKQKKFDQMLAEEklisaryaEERDRAEADAREKETKVLSLSRALEEALETREEMERQN 1532
Cdd:COG1196    652 -----ITGGSRNKRSSLAQKRELKELEEELAELE--------AQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1533 KQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDA 1612
Cdd:COG1196    719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEEL 798
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1613 ------NDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWRE 1686
Cdd:COG1196    799 eeeleeAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDE 878
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1687 VEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADEL--ANGNSGKSALLDEKRHLEARI 1764
Cdd:COG1196    879 LKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELeeEYEDTLETELEREIERLEEEI 958
                          810       820       830
                   ....*....|....*....|....*....|....*
gi 1033370542 1765 GQLEEELDEEQSNMELLNDRYRKLSMQVETLTTEL 1799
Cdd:COG1196    959 EALGPVNLRAIEEYEEVEERYEELKSQREDLEEAK 993
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
901-1739 8.53e-34

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 142.89  E-value: 8.53e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  901 LKELENKYQQLSEEktilAEQLQAETELFAEAEEMRARLAA-RKQELEDILHELESRVEEEEERCQQLQGDKKKMQQHVQ 979
Cdd:TIGR02168  195 LNELERQLKSLERQ----AEKAERYKELKAELRELELALLVlRLEELREELEELQEELKEAEEELEELTAELQELEEKLE 270
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  980 DLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYE 1059
Cdd:TIGR02168  271 ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1060 AVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSL 1139
Cdd:TIGR02168  351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1140 RElqAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEdtldstAAQQELRSKREQE------VTELKKTIEEEV 1213
Cdd:TIGR02168  431 EE--AELKELQAELEELEEELEELQEELERLEEALEELREELE------EAEQALDAAERELaqlqarLDSLERLQENLE 502
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1214 KVHE--AQVLDMRQRHTSALEELSEQLEqsrrFKINLEKTKQALEGENAEMQkEVKLLQAAKLESEQRRKKLEGQVQELQ 1291
Cdd:TIGR02168  503 GFSEgvKALLKNQSGLSGILGVLSELIS----VDEGYEAAIEAALGGRLQAV-VVENLNAAKKAIAFLKQNELGRVTFLP 577
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1292 LRAGEGERAKAELVERLvklqNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQE-ETRQKLNLSSRVRQLEEE 1370
Cdd:TIGR02168  578 LDSIKGTEIQGNDREIL----KNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNAlELAKKLRPGYRIVTLDGD 653
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1371 KAAMLEQLEEEEAAKANfsrQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESlsvryeervqacdkLEKGRTR 1450
Cdd:TIGR02168  654 LVRPGGVITGGSAKTNS---SILERRREIEELEEKIEELEEKIAELEKALAELRKELEE--------------LEEELEQ 716
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1451 LQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETkvlslsrALEEALETREEMER 1530
Cdd:TIGR02168  717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-------ELAEAEAEIEELEA 789
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1531 QNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERelqnrd 1610
Cdd:TIGR02168  790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE------ 863
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1611 danddkkklLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEA 1690
Cdd:TIGR02168  864 ---------LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1691 RAAREEIFIQSRESEK-KLKNLEAELLQLQEDLAASERAKRQAQQERDDL 1739
Cdd:TIGR02168  935 EVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1031-1743 1.28e-30

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 132.50  E-value: 1.28e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1031 EERLSEFTSHMAEEEEKVKSLSKLRNK---YEAVMADMEDRLKKEEKGR-QELEKLKRKLDGEAGDLQEQVAELQQQLEE 1106
Cdd:TIGR02169  183 EENIERLDLIIDEKRQQLERLRREREKaerYQALLKEKREYEGYELLKEkEALERQKEAIERQLASLEEELEKLTEEISE 262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1107 LRQALARKEAELQAALARVEDEAA-QKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTL 1185
Cdd:TIGR02169  263 LEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1186 DSTAAQQELRSKREQEVTELKKtiEEEVKVHEAQVLDMRQRHT--------SALEELSEQLEQSRRFKINLEKTKQALEG 1257
Cdd:TIGR02169  343 REIEEERKRRDKLTEEYAELKE--ELEDLRAELEEVDKEFAETrdelkdyrEKLEKLKREINELKRELDRLQEELQRLSE 420
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1258 ENAEMQKEVKLLQAAKLESEQRRKklegqvqELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLA 1337
Cdd:TIGR02169  421 ELADLNAAIAGIEAKINELEEEKE-------DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1338 TVESHLQDTQELLQEETRQKLNLSSR-------VRQLEEEKAAMLEQLEEEEAAKANFS--------------------- 1389
Cdd:TIGR02169  494 EAEAQARASEERVRGGRAVEEVLKASiqgvhgtVAQLGSVGERYATAIEVAAGNRLNNVvveddavakeaiellkrrkag 573
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1390 -------RQMQSLQQ---------------QVMETKKKLEE-------DAGVAEAIEEARR------------------- 1421
Cdd:TIGR02169  574 ratflplNKMRDERRdlsilsedgvigfavDLVEFDPKYEPafkyvfgDTLVVEDIEAARRlmgkyrmvtlegelfeksg 653
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1422 ------RAAKDLESLSVRYEERVQAC----DKLEKGRTRLQQELDDVTVALDQQRQVVSALEKK----QKKFDQMLAEEk 1487
Cdd:TIGR02169  654 amtggsRAPRGGILFSRSEPAELQRLrerlEGLKRELSSLQSELRRIENRLDELSQELSDASRKigeiEKEIEQLEQEE- 732
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1488 lisARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGknVHELERFKRALEQQV 1567
Cdd:TIGR02169  733 ---EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELSKLEEEV 807
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1568 QEMRAQMEELEDELQATEDGKLRLEVNMQALKAQhERELQNRDDANDDKKKLLSKQVRELEAELdaerkqraqalagrKK 1647
Cdd:TIGR02169  808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ-RIDLKEQIKSIEKEIENLNGKKEELEEEL--------------EE 872
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1648 LELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAAsER 1727
Cdd:TIGR02169  873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE-EL 951
                          810
                   ....*....|....*.
gi 1033370542 1728 AKRQAQQERDDLADEL 1743
Cdd:TIGR02169  952 SLEDVQAELQRVEEEI 967
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
834-1687 4.71e-30

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 130.60  E-value: 4.71e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  834 KKQQQMSALKVMQRNCAAYLKLRHwqwwRLFTKVKPLLQVTRQDEVMQAKAVELQKVQEkhTKTQMDLKELENKYQQLSE 913
Cdd:COG1196    173 RKEEAERKLERTEENLERLEDLLE----ELEKQLEKLERQAEKAERYQELKAELRELEL--ALLLAKLKELRKELEELEE 246
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  914 EKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHELESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQ 993
Cdd:COG1196    247 ELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE 326
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  994 KLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEF----TSHMAEEEEKVKSLSKLRNKYEAVMADMEDRL 1069
Cdd:COG1196    327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALleelEELFEALREELAELEAELAEIRNELEELKREI 406
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1070 KKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVED-------EAAQKNAVLKSLREL 1142
Cdd:COG1196    407 ESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKElerelaeLQEELQRLEKELSSL 486
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1143 QAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTEL-----------------------EDTLDSTAAQQELRSKRE 1199
Cdd:COG1196    487 EARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIkvkekyetaleaalgnrlqavvvENEEVAKKAIEFLKENKA 566
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1200 QEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQR 1279
Cdd:COG1196    567 GRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRIVTLDGDLV 646
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1280 RKK---------------LEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLatveshlQ 1344
Cdd:COG1196    647 EPSgsitggsrnkrsslaQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL-------E 719
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1345 DTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAA 1424
Cdd:COG1196    720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1425 KDLESLSVRYEERVQACDKLEKGRTRLQQELddvtvaldqqrqvvSALEKKQKKFDQMLAEEKLISARYAEERDRAEADA 1504
Cdd:COG1196    800 EELEEAERRLDALERELESLEQRRERLEQEI--------------EELEEEIEELEEKLDELEEELEELEKELEELKEEL 865
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1505 REKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRaqmEELEDELQAT 1584
Cdd:COG1196    866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELE---EELEEEYEDT 942
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1585 EDGKLRLEVnmqalkAQHERELQNRDDANDDKKKLLsKQVRELEAELDAERKQRAQALAgrkklelDLQEAMAQLDaaNK 1664
Cdd:COG1196    943 LETELEREI------ERLEEEIEALGPVNLRAIEEY-EEVEERYEELKSQREDLEEAKE-------KLLEVIEELD--KE 1006
                          890       900
                   ....*....|....*....|...
gi 1033370542 1665 GRDEAGKQLRKLQAQMKELWREV 1687
Cdd:COG1196   1007 KRERFKETFDKINENFSEIFKEL 1029
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1160-1964 1.34e-29

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 129.06  E-value: 1.34e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1160 RAKAEKQRRDLGEELEalktELEDTLDSTAAQQElRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRH--------TSAL 1231
Cdd:COG1196    174 KEEAERKLERTEENLE----RLEDLLEELEKQLE-KLERQAEKAERYQELKAELRELELALLLAKLKElrkeleelEEEL 248
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1232 EELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKL 1311
Cdd:COG1196    249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEEL 328
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1312 QNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELL----QEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKAN 1387
Cdd:COG1196    329 KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLsallEELEELFEALREELAELEAELAEIRNELEELKREIES 408
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1388 FSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQ 1467
Cdd:COG1196    409 LEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA 488
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1468 VVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRAL------------EEALETREEMERQNKQ- 1534
Cdd:COG1196    489 RLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALgnrlqavvveneEVAKKAIEFLKENKAGr 568
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1535 --------LRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQ---MEELEDELQATEDGKLRLEVNmqalkaqhe 1603
Cdd:COG1196    569 atflpldrIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDtlvVDDLEQARRLARKLRIKYRIV--------- 639
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1604 relqNRDDANDDKKKLLSKQVRELEAELDAERKqraqalagrkkleldLQEAMAQLDAANKGRDEAGKQLRKLQAQMKEL 1683
Cdd:COG1196    640 ----TLDGDLVEPSGSITGGSRNKRSSLAQKRE---------------LKELEEELAELEAQLEKLEEELKSLKNELRSL 700
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1684 WREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEAR 1763
Cdd:COG1196    701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEE 780
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1764 IGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMdssvkskyKMAIA 1843
Cdd:COG1196    781 IEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL--------EEELE 852
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1844 TLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLeeaEEEASRAN 1923
Cdd:COG1196    853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL---ERLEVELP 929
                          810       820       830       840
                   ....*....|....*....|....*....|....*....|.
gi 1033370542 1924 ASRRRMQRELEDVTEsaesmnrevTSLRNRLSKVERRQRKR 1964
Cdd:COG1196    930 ELEEELEEEYEDTLE---------TELEREIERLEEEIEAL 961
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
855-1662 1.53e-28

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 125.55  E-value: 1.53e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  855 LRHWQWWRLftkvkpLLQVTRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEE 934
Cdd:TIGR02168  222 LRELELALL------VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  935 MRARLAARKQELEDILHELESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLeeeeaarQKLQLEKVSTEAKLKKMEEDLL 1014
Cdd:TIGR02168  296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL-------EELKEELESLEAELEELEAELE 368
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1015 VLEDQNSKLhkerklmEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLkkeEKGRQELEKLKRKLD-GEAGDL 1093
Cdd:TIGR02168  369 ELESRLEEL-------EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR---ERLQQEIEELLKKLEeAELKEL 438
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1094 QEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMES-EKLARAKAE--KQRRDL 1170
Cdd:TIGR02168  439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENlEGFSEGVKAllKNQSGL 518
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1171 GEELEALKTELE-DTLDSTAAQQELRSKREQEVTELKKTIEEEV---------KVHEAQVLDMRQRH-TSALEELSEQLE 1239
Cdd:TIGR02168  519 SGILGVLSELISvDEGYEAAIEAALGGRLQAVVVENLNAAKKAIaflkqnelgRVTFLPLDSIKGTEiQGNDREILKNIE 598
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1240 QSRRFKINLEKTKQALEGENAEMQKEVK--------LLQAAKLESEQRRKKLEGQ-VQELQLRAGEGERAKAELVERlvk 1310
Cdd:TIGR02168  599 GFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnaLELAKKLRPGYRIVTLDGDlVRPGGVITGGSAKTNSSILER--- 675
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1311 lQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSR 1390
Cdd:TIGR02168  676 -RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1391 QMQSLQQQVMETKKKLEEdagvaeaIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVS 1470
Cdd:TIGR02168  755 ELTELEAEIEELEERLEE-------AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1471 ALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVG 1550
Cdd:TIGR02168  828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1551 KNVHELERFKRALEQQVQEMRAQMEELEDELQATEDgKLRLEVNMQAlkaqheRELQNRDDANDDKKKLLSKQVRELEAE 1630
Cdd:TIGR02168  908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE-RLSEEYSLTL------EEAEALENKIEDDEEEARRRLKRLENK 980
                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*
gi 1033370542 1631 LDA-------------ERKQRAQALAGRKKlelDLQEAMAQLDAA 1662
Cdd:TIGR02168  981 IKElgpvnlaaieeyeELKERYDFLTAQKE---DLTEAKETLEEA 1022
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1071-1950 2.18e-24

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 112.08  E-value: 2.18e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1071 KEEKGRQELEKLKRKLDgeagDLQEQVAELQQQLEELRQALARKEaELQAALARVED-----EAAQKNAVLKSLRELQAQ 1145
Cdd:TIGR02169  171 KKEKALEELEEVEENIE----RLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREyegyeLLKEKEALERQKEAIERQ 245
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1146 LAELQEDMEseklaraKAEKQRRDLGEELEALKTELEDtldstaAQQELRSKREQEVTELKKTIEEeVKVHEAQVLDMRQ 1225
Cdd:TIGR02169  246 LASLEEELE-------KLTEEISELEKRLEEIEQLLEE------LNKKIKDLGEEEQLRVKEKIGE-LEAEIASLERSIA 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1226 RHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELV 1305
Cdd:TIGR02169  312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1306 ERLVKLQNELDgvsgtlgstesktiklakdlatvesHLQDTQELLQEETRQklnLSSRVRQLEEEKAamleqleeeeaak 1385
Cdd:TIGR02169  392 EKLEKLKREIN-------------------------ELKRELDRLQEELQR---LSEELADLNAAIA------------- 430
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1386 anfsrqmqSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDdvtvALDQQ 1465
Cdd:TIGR02169  431 --------GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA----EAEAQ 498
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1466 RQVVSALEKKQKKFDQMLaeEKLISARYAEERDRAEADAReketkvlsLSRALEEALETReemerqnkqlraeMDDLVSS 1545
Cdd:TIGR02169  499 ARASEERVRGGRAVEEVL--KASIQGVHGTVAQLGSVGER--------YATAIEVAAGNR-------------LNNVVVE 555
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1546 KDDVGKNVHEL---ERFKRALEQQVQEMRAQMEELEdelQATEDGKLRLEVNMQALKAQHE-------RELQNRDDANDD 1615
Cdd:TIGR02169  556 DDAVAKEAIELlkrRKAGRATFLPLNKMRDERRDLS---ILSEDGVIGFAVDLVEFDPKYEpafkyvfGDTLVVEDIEAA 632
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1616 KKKLLSKQVRELEAEL--------DAERKQRAQALAGRKKLElDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREV 1687
Cdd:TIGR02169  633 RRLMGKYRMVTLEGELfeksgamtGGSRAPRGGILFSRSEPA-ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1688 EEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQL 1767
Cdd:TIGR02169  712 SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS 791
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1768 EEELDEEQsnMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKlgemdssvKSKYKMAIATLES 1847
Cdd:TIGR02169  792 RIPEIQAE--LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ--------IKSIEKEIENLNG 861
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1848 KVAQLEEQLEQ-ESRERILSGKLVrRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASR 1926
Cdd:TIGR02169  862 KKEELEEELEElEAALRDLESRLG-DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940
                          890       900       910
                   ....*....|....*....|....*....|
gi 1033370542 1927 RRMQRE------LEDVTESAESMNREVTSL 1950
Cdd:TIGR02169  941 GEDEEIpeeelsLEDVQAELQRVEEEIRAL 970
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
882-1732 5.44e-24

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 110.93  E-value: 5.44e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  882 AKAVELQKVQEKhtKTQMDLKELENKYQQLSEEKTILAEQLQAETE----LFAEAEEMRARLAARKQELEDILHELESRV 957
Cdd:TIGR02169  208 EKAERYQALLKE--KREYEGYELLKEKEALERQKEAIERQLASLEEelekLTEEISELEKRLEEIEQLLEELNKKIKDLG 285
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  958 EEEEERCQ----QLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLlvledqnsklhkerklmEER 1033
Cdd:TIGR02169  286 EEEQLRVKekigELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI-----------------EEE 348
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1034 LSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLD---GEAGDLQEQVAELQQQLEELRQA 1110
Cdd:TIGR02169  349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINelkRELDRLQEELQRLSEELADLNAA 428
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1111 LARKEAELQAALARVEDEAAQknavlksLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELeDTLDSTAA 1190
Cdd:TIGR02169  429 IAGIEAKINELEEEKEDKALE-------IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL-AEAEAQAR 500
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1191 QQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEelseqLEQSRRFKiNLEKTKQALEGENAEMQKEVKLLQ 1270
Cdd:TIGR02169  501 ASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIE-----VAAGNRLN-NVVVEDDAVAKEAIELLKRRKAGR 574
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1271 AAKLesEQRRKKLEGQVQELQLRAGEGERAkAELVERLVKLQNELDGVSGTLGSTESktIKLAKDL------ATVESHLQ 1344
Cdd:TIGR02169  575 ATFL--PLNKMRDERRDLSILSEDGVIGFA-VDLVEFDPKYEPAFKYVFGDTLVVED--IEAARRLmgkyrmVTLEGELF 649
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1345 DTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAA 1424
Cdd:TIGR02169  650 EKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1425 KDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARyaEERDRAEADA 1504
Cdd:TIGR02169  730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ--AELSKLEEEV 807
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1505 REKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQAT 1584
Cdd:TIGR02169  808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1585 EDGKLRLEVNMQALKaqherelQNRDDANDDkkkllskqvRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANK 1664
Cdd:TIGR02169  888 KKERDELEAQLRELE-------RKIEELEAQ---------IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL 951
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542 1665 GRDEAGKQLRKLQAQMKELW-------REVEEARAAREEIfiqsresEKKLKNLEAELLQLQEDLAASERAKRQA 1732
Cdd:TIGR02169  952 SLEDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDEL-------KEKRAKLEEERKAILERIEEYEKKKREV 1019
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
880-1592 6.86e-24

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 110.57  E-value: 6.86e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  880 MQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQL-QAETELFAEAEEMRARLAARKQELEDILHELESRVE 958
Cdd:COG1196    318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKeELEEKLSALLEELEELFEALREELAELEAELAEIRN 397
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  959 EEeercQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLseft 1038
Cdd:COG1196    398 EL----EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELEREL---- 469
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1039 shmAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGdlqeQVAELQQQLEELRQALarkEAEL 1118
Cdd:COG1196    470 ---AELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYG----PVAELIKVKEKYETAL---EAAL 539
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1119 QAALAR--VEDEAAQKNAV--LKSLRELQAQLAELqEDMESEKLARAKAEKQRRDLGEEL--------EALKTELEDTL- 1185
Cdd:COG1196    540 GNRLQAvvVENEEVAKKAIefLKENKAGRATFLPL-DRIKPLRSLKSDAAPGFLGLASDLidfdpkyePAVRFVLGDTLv 618
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1186 --DSTAAQQELRSKR--------EQEVTELKKTI-------------EEEVKVHEAQVLDMRQRHTSALEELSEQLEQSR 1242
Cdd:COG1196    619 vdDLEQARRLARKLRikyrivtlDGDLVEPSGSItggsrnkrsslaqKRELKELEEELAELEAQLEKLEEELKSLKNELR 698
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1243 RFKINLEKTKQALEgenaEMQKEVKLLQAAKLESEQRRKKLEGQVQELqlragegERAKAELVERLVKLQNELDGVSGTL 1322
Cdd:COG1196    699 SLEDLLEELRRQLE----ELERQLEELKRELAALEEELEQLQSRLEEL-------EEELEELEEELEELQERLEELEEEL 767
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1323 GSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMET 1402
Cdd:COG1196    768 ESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1403 KKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQM 1482
Cdd:COG1196    848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVE 927
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1483 L--AEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFK 1560
Cdd:COG1196    928 LpeLEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007
                          730       740       750
                   ....*....|....*....|....*....|...
gi 1033370542 1561 R-ALEQQVQEMRAQMEELEDELQATEDGKLRLE 1592
Cdd:COG1196   1008 ReRFKETFDKINENFSEIFKELFGGGTAELELT 1040
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
841-1637 7.77e-24

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 110.16  E-value: 7.77e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  841 ALKVMQRNCAAYLKLRHWQWWRLfTKVKPLLQVTRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTIL-- 918
Cdd:TIGR02169  215 ALLKEKREYEGYELLKEKEALER-QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvk 293
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  919 -------AEQLQAETELFAEAEEMRaRLAARKQELEDILHELESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAA 991
Cdd:TIGR02169  294 ekigeleAEIASLERSIAEKERELE-DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE 372
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  992 RQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKK 1071
Cdd:TIGR02169  373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1072 EEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQE 1151
Cdd:TIGR02169  453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1152 DMESEKLARAKAekqrrdLGEELEALKteLEDTLDSTAAQQELRSKREQEVT-----ELKKTIEEEVKVHEAQVLDM--- 1223
Cdd:TIGR02169  533 VGERYATAIEVA------AGNRLNNVV--VEDDAVAKEAIELLKRRKAGRATflplnKMRDERRDLSILSEDGVIGFavd 604
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1224 ----RQRHTSALEE------LSEQLEQSRRFKINLEKTkqALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLR 1293
Cdd:TIGR02169  605 lvefDPKYEPAFKYvfgdtlVVEDIEAARRLMGKYRMV--TLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRER 682
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1294 AGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAA 1373
Cdd:TIGR02169  683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE 762
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1374 MLEQLEEEEAAKANFSRQMQSLQQqvMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQ 1453
Cdd:TIGR02169  763 LEARIEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1454 ELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNK 1533
Cdd:TIGR02169  841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1534 QLRAEMDDLVSSKDDVGKNVHELERFKRAL--EQQVQEMRaqmEELEDELQATEDgklrleVNMQALKaQHERELQNRDD 1611
Cdd:TIGR02169  921 ELKAKLEALEEELSEIEDPKGEDEEIPEEElsLEDVQAEL---QRVEEEIRALEP------VNMLAIQ-EYEEVLKRLDE 990
                          810       820
                   ....*....|....*....|....*...
gi 1033370542 1612 ANDDKKKLL--SKQVRELEAELDAERKQ 1637
Cdd:TIGR02169  991 LKEKRAKLEeeRKAILERIEEYEKKKRE 1018
PTZ00121 PTZ00121
MAEBL; Provisional
876-1747 2.16e-23

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 109.08  E-value: 2.16e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  876 QDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQelEDILHELES 955
Cdd:PTZ00121  1068 QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKA--EDARKAEEA 1145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  956 RVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSteaKLKKMEEdllvledqNSKLHKERKLMEERLS 1035
Cdd:PTZ00121  1146 RKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAE---ELRKAED--------ARKAEAARKAEEERKA 1214
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1036 EfTSHMAEEEEKVKSLSKLRnkyEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQV-AELQQQLEELRQALARK 1114
Cdd:PTZ00121  1215 E-EARKAEDAKKAEAVKKAE---EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIkAEEARKADELKKAEEKK 1290
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1115 EAE--LQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQ 1192
Cdd:PTZ00121  1291 KADeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1193 ELRSKREQEVTELKKTIEEEVKVHEAQvlDMRQRHTSALEELSEQLEQSRRFKinlEKTKQALEGENAEMQK----EVKL 1268
Cdd:PTZ00121  1371 KKKEEAKKKADAAKKKAEEKKKADEAK--KKAEEDKKKADELKKAAAAKKKAD---EAKKKAEEKKKADEAKkkaeEAKK 1445
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1269 LQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNEldgvsgtlgSTESKtiKLAKDLATVESHLQDTQE 1348
Cdd:PTZ00121  1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK---------AEEAK--KKADEAKKAAEAKKKADE 1514
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1349 LLQEETRQKlnlSSRVRQLEEEKAAmLEQLEEEEAAKANFSRQMQSLQQ----QVMETKKKLEEDAGVA-EAIEEARRRA 1423
Cdd:PTZ00121  1515 AKKAEEAKK---ADEAKKAEEAKKA-DEAKKAEEKKKADELKKAEELKKaeekKKAEEAKKAEEDKNMAlRKAEEAKKAE 1590
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1424 AKDLESLSVRYEE----RVQACDKLEKGRTRlQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDR 1499
Cdd:PTZ00121  1591 EARIEEVMKLYEEekkmKAEEAKKAEEAKIK-AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1500 AEADAREKE--TKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEEL 1577
Cdd:PTZ00121  1670 AEEDKKKAEeaKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1578 ---EDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKLlskqvrELEAELDAERKQRAQALAGRKKLELDLQE 1654
Cdd:PTZ00121  1750 kkdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM------EVDKKIKDIFDNFANIIEGGKEGNLVIND 1823
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1655 AMAQLDAANKGRDEAGKQLRklqaqmkelwrevEEARAAREEIFIQSRESEK---KLKNLEAELLQLQEDLAASERAKRQ 1731
Cdd:PTZ00121  1824 SKEMEDSAIKEVADSKNMQL-------------EEADAFEKHKFNKNNENGEdgnKEADFNKEKDLKEDDEEEIEEADEI 1890
                          890
                   ....*....|....*.
gi 1033370542 1732 AQQERDDLADELANGN 1747
Cdd:PTZ00121  1891 EKIDKDDIEREIPNNN 1906
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
1025-1890 6.68e-23

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 107.36  E-value: 6.68e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1025 KERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADME-----DRLKKEEKGRQELEKLKRKLDGEAGDL------ 1093
Cdd:pfam02463  153 ERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEElklqeLKLKEQAKKALEYYQLKEKLELEEEYLlyldyl 232
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1094 ---QEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDL 1170
Cdd:pfam02463  233 klnEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1171 GEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEvkvhEAQVLDMRQRHTSALEELSEQLEQsrrFKINLEK 1250
Cdd:pfam02463  313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAE----EEEEEELEKLQEKLEQLEEELLAK---KKLESER 385
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1251 TKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEgqvqELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTI 1330
Cdd:pfam02463  386 LSSAAKLKEEELELKSEEEKEAQLLLELARQLED----LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLL 461
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1331 KLAKDLATVESHLQDTQELLQEETRQKLNLSSRvrqLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEE-D 1409
Cdd:pfam02463  462 KDELELKKSEDLLKETQLVKLQEQLELLLSRQK---LEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVaV 538
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1410 AGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLI 1489
Cdd:pfam02463  539 ENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADED 618
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1490 SARYAE----ERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFK---RA 1562
Cdd:pfam02463  619 DKRAKVvegiLKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEilrRQ 698
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1563 LEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKLLSKQVRELEAELDAERKQRAQAL 1642
Cdd:pfam02463  699 LEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAE 778
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1643 AGRKKLELDLQ-EAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQED 1721
Cdd:pfam02463  779 EREKTEKLKVEeEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER 858
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1722 LAASERAK----RQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTT 1797
Cdd:pfam02463  859 LEEEITKEellqELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPE 938
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1798 ELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSSVKSKYKMAIATLESKVAQLEEQLEQESRERilsgklvrraeKKL 1877
Cdd:pfam02463  939 ELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK-----------KKL 1007
                          890
                   ....*....|...
gi 1033370542 1878 KEVILQVDEERRN 1890
Cdd:pfam02463 1008 IRAIIEETCQRLK 1020
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
992-1581 2.05e-21

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 102.06  E-value: 2.05e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  992 RQKLQLEKVSTEAK-LKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLK 1070
Cdd:PRK03918   152 RQILGLDDYENAYKnLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1071 KEEKGRQELEKLKR---KLDGEAGDLQEQVAELQQQLEELRQalarKEAELQAALARvedeaaqknavLKSLRELQAQLA 1147
Cdd:PRK03918   232 ELEELKEEIEELEKeleSLEGSKRKLEEKIRELEERIEELKK----EIEELEEKVKE-----------LKELKEKAEEYI 296
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1148 ELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQ---EVTELKKTIE--EEVKVHEAQVLD 1222
Cdd:PRK03918   297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKElekRLEELEERHElyEEAKAKKEELER 376
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1223 MRQRHTS-ALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLE---------------SEQRRKKLegq 1286
Cdd:PRK03918   377 LKKRLTGlTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcgrelTEEHRKEL--- 453
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1287 VQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLgSTESKTIKL---AKDLATVESHLQ--DTQELLQ-----EETRQ 1356
Cdd:PRK03918   454 LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL-KKESELIKLkelAEQLKELEEKLKkyNLEELEKkaeeyEKLKE 532
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1357 KLN-LSSRVRQLEEEkaamLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAgvAEAIEEARRRAaKDLESLSVRYE 1435
Cdd:PRK03918   533 KLIkLKGEIKSLKKE----LEKLEELKKKLAELEKKLDELEEELAELLKELEELG--FESVEELEERL-KELEPFYNEYL 605
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1436 ERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAeeklisaRYAEErdraeaDAREKETKVLSLS 1515
Cdd:PRK03918   606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK-------KYSEE------EYEELREEYLELS 672
                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1516 RALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEqQVQEMRAQMEELEDEL 1581
Cdd:PRK03918   673 RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE-RVEELREKVKKYKALL 737
MYSc_Myo33 cd14894
class myosin, motor domain; Class XXXIII myosins have variable numbers of IQ domain and 2 ...
99-738 7.17e-21

class myosin, motor domain; Class XXXIII myosins have variable numbers of IQ domain and 2 tandem ANK repeats that are separated by a PH domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276859 [Multi-domain]  Cd Length: 871  Bit Score: 100.20  E-value: 7.17e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542   99 LKDRYYSGLIYTYSGLFCV-VINPYKNL------PIYTEQIVEMYRGKKRHE--MPPHIYAISE---------------- 153
Cdd:cd14894      7 LTSRFDDDRIYTYINHHTMaVMNPYRLLqtarftSIYDEQVVLTYADTANAEtvLAPHPFAIAKqslvrlffdnehtmpl 86
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  154 ----AAYRSMLQDReDQSILCTGESGAGKTENTKKVIQYLAHVA-------------------------------SSHKA 198
Cdd:cd14894     87 pstiSSNRSMTEGR-GQSLFLCGESGSGKTELAKDLLKYLVLVAqpalskgseetckvsgstrqpkiklftsstkSTIQM 165
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  199 RKDH--------------------NIPPE-------------------------YPTEAKQGELERQL------------ 221
Cdd:cd14894    166 RTEEartialleakgvekyeivllDLHPErwdemtsvsrskrlpqvhvdglffgFYEKLEHLEDEEQLrmyfknphaakk 245
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  222 ----LQANPILEAFGNAKTVKNDNSSRFGKF--IRINFDVAGY---IVGANIETYLLEKSRAIRQA------KDERTFHI 286
Cdd:cd14894    246 lsivLDSNIVLEAFGHATTSMNLNSSRFGKMttLQVAFGLHPWefqICGCHISPFLLEKSRVTSERgresgdQNELNFHI 325
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  287 FYQLLVGAGEH-----MKGELLLEPFN--QYRFLSNGYLPIPG--------QQDKEIFHETMESMRIMGFSHEEIHCMLR 351
Cdd:cd14894    326 LYAMVAGVNAFpfmrlLAKELHLDGIDcsALTYLGRSDHKLAGfvskedtwKKDVERWQQVIDGLDELNVSPDEQKTIFK 405
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  352 MVSAVLQFGNIVFRKERNTDQASMPDN---TAAQKLCHLLGM-NVTEFTRAILTPRIKV--GRDYVQKAQTKEQADFAVE 425
Cdd:cd14894    406 VLSAVLWLGNIELDYREVSGKLVMSSTgalNAPQKVVELLELgSVEKLERMLMTKSVSLqsTSETFEVTLEKGQVNHVRD 485
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  426 ALAKATYERLFRWLVHRINRAL-------DRTKRQ---------GASFIGILDIAGFEIFQLNSFEQLCINYTNEKLqql 489
Cdd:cd14894    486 TLARLLYQLAFNYVVFVMNEATkmsalstDGNKHQmdsnasapeAVSLLKIVDVFGFEDLTHNSLDQLCINYLSEKL--- 562
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  490 fnhtmfvleqeeYQREGiewNFIDFGLDLQPCI-------DLIERPANPPGVLALLDEECWFPKAT----------DKSF 552
Cdd:cd14894    563 ------------YAREE---QVIAVAYSSRPHLtardsekDVLFIYEHPLGVFASLEELTILHQSEnmnaqqeekrNKLF 627
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  553 VEKVSQEQGTHPKfQKPRQLRDKA----------DFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSADKFTAELW 622
Cdd:cd14894    628 VRNIYDRNSSRLP-EPPRVLSNAKrhtpvllnvlPFVIPHTRGNVIYDANDFVKKNSDFVYANLLVGLKTSNSSHFCRML 706
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  623 KDEIQniqkvyffdsYAVAPQGPVEMdrivgldqvsgmgdlaFGASYKTKKGMFRTVGQlYKESLSKLMSTLRNTNPNFV 702
Cdd:cd14894    707 NESSQ----------LGWSPNTNRSM----------------LGSAESRLSGTKSFVGQ-FRSHVNVLTSQDDKNMPFYF 759
                          810       820       830
                   ....*....|....*....|....*....|....*.
gi 1033370542  703 RCIIPNHEKRAGKLEPHLVLDQLRCNGVLEGIRICR 738
Cdd:cd14894    760 HCIRPNAKKQPSLVNNDLVEQQCRSQRLIRQMEICR 795
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
1200-1907 4.13e-20

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 97.86  E-value: 4.13e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1200 QEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSE-QLEQSRRFKINlEKTKQALEGENAEMQKEVKLLQAAKLESEQ 1278
Cdd:pfam15921   85 HQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEmQMERDAMADIR-RRESQSQEDLRNQLQNTVHELEAAKCLKED 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1279 RRKKLEGQVQELQLRAGEGERAKAELVERLVKLQN-------ELDGVSG----TLGSTESKTIKlakDLATVESHL---- 1343
Cdd:pfam15921  164 MLNDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEasgkkiyEHDSMSTihfrSLGSAISKILR---ELDTEISYLkgri 240
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1344 ---QDTQELLQEETRQKLNL-----SSRVRQL----EEEKAAMLEQLEEEEAAKANFSRQMQSLQQQV-----METKKKL 1406
Cdd:pfam15921  241 fpvEDQLEALKSESQNKIELllqqhQDRIEQLisehEVEITGLTEKASSARSQANSIQSQLEIIQEQArnqnsMYMRQLS 320
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1407 EEDAGVAE---AIEEARRRAAKDLESLSvryEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQML 1483
Cdd:pfam15921  321 DLESTVSQlrsELREAKRMYEDKIEELE---KQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEK 397
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1484 AEEKLISAR-----YAEERDRAEADAREKETKVL-SLSRALEEalETREEMERQNKQLRAEMDDLV----------SSKD 1547
Cdd:pfam15921  398 EQNKRLWDRdtgnsITIDHLRRELDDRNMEVQRLeALLKAMKS--ECQGQMERQMAAIQGKNESLEkvssltaqleSTKE 475
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1548 DVGKNVHELERFKRALE---QQVQEMRAQMEELEDELQAT--EDGKLRLEVNMQALKAQHereLQNRDDanddkkkllsk 1622
Cdd:pfam15921  476 MLRKVVEELTAKKMTLEsseRTVSDLTASLQEKERAIEATnaEITKLRSRVDLKLQELQH---LKNEGD----------- 541
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1623 QVRELEAELDAERKQRAQAlagRKKLELDLQ--EAMAQLdAANKGRDEAGKQLRK--LQAQMKELWREVEEARAAREEIF 1698
Cdd:pfam15921  542 HLRNVQTECEALKLQMAEK---DKVIEILRQqiENMTQL-VGQHGRTAGAMQVEKaqLEKEINDRRLELQEFKILKDKKD 617
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1699 IQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIgqleeelDEEQSNM 1778
Cdd:pfam15921  618 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF-------RNKSEEM 690
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1779 ELLNDryrKLSMQVETLTTELGAERSFSQKTENARQQLER----QNKDLRAKLGEMDSsvkskykmaiatLESKVAQLEE 1854
Cdd:pfam15921  691 ETTTN---KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKvamgMQKQITAKRGQIDA------------LQSKIQFLEE 755
                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1033370542 1855 QLEQESRERilsgKLVRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQ 1907
Cdd:pfam15921  756 AMTNANKEK----HFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKE 804
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1113-1963 5.67e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 97.43  E-value: 5.67e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1113 RKEAEL-----QAALARVEDeaaqknavlkSLRELQAQLAELQedmeseklARAKAEKQRRDLGEELEALKTELEdTLDS 1187
Cdd:TIGR02168  174 RKETERklertRENLDRLED----------ILNELERQLKSLE--------RQAEKAERYKELKAELRELELALL-VLRL 234
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1188 TAAQQELRSKREQEvtelkktieeevkvheAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVK 1267
Cdd:TIGR02168  235 EELREELEELQEEL----------------KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS 298
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1268 LLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQ 1347
Cdd:TIGR02168  299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1348 ELLQEetrqklnLSSRVRQLEEEKAAmleqleeeeaakanfsrqmQSLQQQVMETKKkleedagvaEAIEEARRRAAKDL 1427
Cdd:TIGR02168  379 EQLET-------LRSKVAQLELQIAS-------------------LNNEIERLEARL---------ERLEDRRERLQQEI 423
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1428 ESLSVRYEErvQACDKLEKGRTRLQQELDDVTVALDQqrqVVSALEKKQKKFDQmlAEEKLISARYAEERDRAEADAREk 1507
Cdd:TIGR02168  424 EELLKKLEE--AELKELQAELEELEEELEELQEELER---LEEALEELREELEE--AEQALDAAERELAQLQARLDSLE- 495
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1508 etkvlslsrALEEALETREEMERQNKQLRAEMDDLVSSkddVGKNVHELERFKRALEQQVQEmRAQMEELEDELQAtedg 1587
Cdd:TIGR02168  496 ---------RLQENLEGFSEGVKALLKNQSGLSGILGV---LSELISVDEGYEAAIEAALGG-RLQAVVVENLNAA---- 558
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1588 klrlevnMQALKAQHErelqnrddaNDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGR- 1666
Cdd:TIGR02168  559 -------KKAIAFLKQ---------NELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLl 622
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1667 ---------DEAGKQLRKLQAQMK------ELWRE--VEEARAAREEIFIQSRESEkkLKNLEAELLQLQEDLAASERAK 1729
Cdd:TIGR02168  623 ggvlvvddlDNALELAKKLRPGYRivtldgDLVRPggVITGGSAKTNSSILERRRE--IEELEEKIEELEEKIAELEKAL 700
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1730 RQAQQERDDLADELangnsgksalldekrhlearigqleeeldeeqsnmELLNDRYRKLSMQVETLTTELGAERSFSQKT 1809
Cdd:TIGR02168  701 AELRKELEELEEEL-----------------------------------EQLRKELEELSRQISALRKDLARLEAEVEQL 745
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1810 ENARQQLERQNKDLRAKLGEMDSSVkSKYKMAIATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKE-------VIL 1882
Cdd:TIGR02168  746 EERIAQLSKELTELEAEIEELEERL-EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLlneeaanLRE 824
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1883 QVDEERRNADQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASRRRMQRELEDVTESAESMNREVTSLRNRLSKVERRQR 1962
Cdd:TIGR02168  825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904

                   .
gi 1033370542 1963 K 1963
Cdd:TIGR02168  905 E 905
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
888-1430 1.57e-19

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 95.98  E-value: 1.57e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  888 QKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETElfAEAEEMRARLAARKQELEDILHELESRVEEEEERCQQL 967
Cdd:COG0419    174 ELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELK--ELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERL 251
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  968 QGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEk 1047
Cdd:COG0419    252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEER- 330
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1048 vksLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVED 1127
Cdd:COG0419    331 ---LEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEE 407
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1128 EAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQR-----------------RDLGEELEALKTELEDTLDSTAA 1190
Cdd:COG0419    408 IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKElmiaelagagekcpvcgQELPEEHEKELLELYELELEELE 487
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1191 QQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLE--KTKQALEGENAEMQKEVKL 1268
Cdd:COG0419    488 EELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEelKEKLQLQQLKEELRQLEDR 567
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1269 LQAAKLESEQRRKKLE--GQVQELQLRAGEGERAKAELVERLVKLQNELDgvSGTLGSTESKTIKLAKDLATVESHLQDT 1346
Cdd:COG0419    568 LQELKELLEELRLLRTrkEELEELRERLKELKKKLKELEERLSQLEELLQ--SLELSEAENELEEAEEELESELEKLNLQ 645
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1347 QELLQEETRQKLNLSSRVRQLEEE------KAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEAR 1420
Cdd:COG0419    646 AELEELLQAALEELEEKVEELEAEirrelqRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRK 725
                          570
                   ....*....|
gi 1033370542 1421 RRAAKDLESL 1430
Cdd:COG0419    726 AELEELKKEL 735
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1406-1965 1.96e-19

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 95.94  E-value: 1.96e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1406 LEEDAGVAEA---IEEARR---RAAKDLESLSVRYEERVQACDKLEKGRT------RLQQELDDVTVAL---------DQ 1464
Cdd:COG1196    161 IEEAAGVSKYkerKEEAERkleRTEENLERLEDLLEELEKQLEKLERQAEkaeryqELKAELRELELALllaklkelrKE 240
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1465 QRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEadarEKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVS 1544
Cdd:COG1196    241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELE----ELREELEELQEELLELKEEIEELEGEISLLRERLEELEN 316
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1545 SKDDVGKNVHELERFKRALEQQVQEMRAQMEELE----------DELQATEDGKLRLEVNMQALKAQHERELQNRDDAND 1614
Cdd:COG1196    317 ELEELEERLEELKEKIEALKEELEERETLLEELEqllaeleeakEELEEKLSALLEELEELFEALREELAELEAELAEIR 396
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1615 DKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAR 1694
Cdd:COG1196    397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEEL 476
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1695 EEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQ------------AQQERDDLADELANGNSGKSA---------- 1752
Cdd:COG1196    477 QRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGlpgvygpvaeliKVKEKYETALEAALGNRLQAVvveneevakk 556
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1753 ----------------LLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQ-------VETLTTELGAERSFSQKT 1809
Cdd:COG1196    557 aieflkenkagratflPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFvlgdtlvVDDLEQARRLARKLRIKY 636
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1810 ENARQQLERQNKDLRAKLGEMDSSVKSKYKMAIATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERR 1889
Cdd:COG1196    637 RIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1890 NADQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASRRRMQRELEDVTESAESMNREVTSLRNRLSKVERRQRKRT 1965
Cdd:COG1196    717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1162-1745 2.82e-19

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 95.21  E-value: 2.82e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1162 KAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKR-EQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQ 1240
Cdd:COG0419    171 KLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEAlEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKER 250
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1241 srrfkinLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLvklqneldgvsg 1320
Cdd:COG0419    251 -------LEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR------------ 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1321 tlgstesktiKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLeeeeaakanfSRQMQSLQQQVM 1400
Cdd:COG0419    312 ----------ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLL----------EERLKELEERLE 371
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1401 ETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVA---LDQQRQVVSALEKKQK 1477
Cdd:COG0419    372 ELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEikkLEEQINQLESKELMIA 451
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1478 KFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRAL-EEALETREEMERQNKQLRAemddLVSSKDDVGKNVHEL 1556
Cdd:COG0419    452 ELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSReKEEAELREEIEELEKELRE----LEEELIELLELEEAL 527
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1557 ERFKRALEQQVQEMRAQMEELEDELQA-TEDGKLR-LEVNMQALKAQHERELQNRDDANDDKK-----KLLSKQVRELEA 1629
Cdd:COG0419    528 KEELEEKLEKLENLLEELEELKEKLQLqQLKEELRqLEDRLQELKELLEELRLLRTRKEELEElrerlKELKKKLKELEE 607
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1630 ELDAERKQRAQALAGRKKLEL-----DLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIfIQSRES 1704
Cdd:COG0419    608 RLSQLEELLQSLELSEAENELeeaeeELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENE-EQLEEK 686
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|.
gi 1033370542 1705 EKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELAN 1745
Cdd:COG0419    687 LEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAE 727
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
1286-1963 1.05e-18

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 93.30  E-value: 1.05e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1286 QVQELQLRAGEGERAKaelvERLVKLQNELdgvsgtlGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVR 1365
Cdd:pfam01576    3 QEEEMQAKEEELQKVK----EKQQKAESEL-------KELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQ 71
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1366 QLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLE 1445
Cdd:pfam01576   72 ELEEILHELEARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQ 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1446 KGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEeklisaryAEERDRAEadarEKetkvlslsraleealeTR 1525
Cdd:pfam01576  152 KERKLLEERISEFTSNLAEEEEKSKSLNKLKNKHEAMISD--------LEDRLKKE----EK----------------GR 203
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1526 EEMERQNKQLRAEMDDLVSSKDDvgknvhelerfkraLEQQVQEMRAQMEELEDELQATEDgKLRLEVNMQALKAQHERE 1605
Cdd:pfam01576  204 QELEKAKRKLEGESSDLQEQIAE--------------LQAQIAELRAQLAKKEEELQAALA-RLEEETAQKNAALKKLRE 268
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1606 LQNrddanddkkkllskQVRELEAELDAERKQRAQALAGRKKLELDLQ----EAMAQLDAANkgrdeAGKQLR-KLQAQM 1680
Cdd:pfam01576  269 LEA--------------QLSELQEDLESERAARAKAEKQRRDLGEELEalktELEDTLDTTA-----AQQELRsKREQEV 329
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1681 KELWREVEEARAAREEIFIQSRESEKK-LKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRH 1759
Cdd:pfam01576  330 TELKKALEEETRSHEAQLQEMRQKHTQaLEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAKQDSEHKRKK 409
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1760 LEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEmDSSVKSKYK 1839
Cdd:pfam01576  410 LEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQE-ETRQKLNLS 488
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1840 MAIATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLEEAEEEA 1919
Cdd:pfam01576  489 SRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQRLEEKAAAY 568
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....
gi 1033370542 1920 SRANASRRRMQRELEDVTesaesmnREVTSLRNRLSKVERRQRK 1963
Cdd:pfam01576  569 DKLEKTKNRLQQELDDLL-------VDLDHQRQLVSNLEKKQKK 605
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1025-1586 1.30e-18

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 92.80  E-value: 1.30e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1025 KERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDG----------EAGDLQ 1094
Cdd:PRK02224   199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDlretiaeterEREELA 278
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1095 EQVAELQQQLEELRQA-------LARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQR 1167
Cdd:PRK02224   279 EEVRDLRERLEELEEErddllaeAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERA 358
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1168 RDLGEELEALKTELEDTldstaaqQELRSKREQEVTELKKTIEE-EVKVHEAQVldMRQRHTSALEELSEQLEQSRRFKI 1246
Cdd:PRK02224   359 EELREEAAELESELEEA-------REAVEDRREEIEELEEEIEElRERFGDAPV--DLGNAEDFLEELREERDELREREA 429
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1247 NLEKTKQALEGENAEMQkevKLLQAAKLESEQRRKKLEGQVQELqlraGEGERAKAELVERLVKLQNELDGVsgtlgste 1326
Cdd:PRK02224   430 ELEATLRTARERVEEAE---ALLEAGKCPECGQPVEGSPHVETI----EEDRERVEELEAELEDLEEEVEEV-------- 494
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1327 SKTIKLAKDLATVESHLQDTQEllqeetrQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKL 1406
Cdd:PRK02224   495 EERLERAEDLVEAEDRIERLEE-------RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA 567
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1407 EEDAGVAEAIEEARRRAAKDLESLSvRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEE 1486
Cdd:PRK02224   568 EEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA 646
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1487 KLISARyaEERDRAEA----------DAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLvsskDDVGKNVHEL 1556
Cdd:PRK02224   647 RIEEAR--EDKERAEEyleqveekldELREERDDLQAEIGAVENELEELEELRERREALENRVEAL----EALYDEAEEL 720
                          570       580       590
                   ....*....|....*....|....*....|.
gi 1033370542 1557 ERFKRALEqqvQEMRAQ-MEELEDELQATED 1586
Cdd:PRK02224   721 ESMYGDLR---AELRQRnVETLERMLNETFD 748
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
873-1700 1.75e-18

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 92.73  E-value: 1.75e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  873 VTRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRA-RLAARKQELEDILH 951
Cdd:pfam02463  164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYlDYLKLNEERIDLLQ 243
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  952 ELESRVEEEEERCQQLQGDKKKMQQHVQdleeQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKER---- 1027
Cdd:pfam02463  244 ELLRDEQEEIESSKQEIEKEEEKLAQVL----KENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKlkes 319
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1028 ----KLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRK----LDGEAGDLQEQVAE 1099
Cdd:pfam02463  320 ekekKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLeserLSSAAKLKEEELEL 399
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1100 LQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAK---AEKQRRDLGEELEA 1176
Cdd:pfam02463  400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKdelELKKSEDLLKETQL 479
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1177 LKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSE-------------------Q 1237
Cdd:pfam02463  480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEnykvaistavivevsatadE 559
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1238 LEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDG 1317
Cdd:pfam02463  560 VEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKE 639
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1318 VSGTLGSTESKTIKLAKDLAtvESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQ 1397
Cdd:pfam02463  640 SAKAKESGLRKGVSLEEGLA--EKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1398 QVMETKKKLEEDAgVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQK 1477
Cdd:pfam02463  718 EAEELLADRVQEA-QDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKL 796
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1478 KFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSR---ALEEALETREEMERQNKQLRAEMDDLVS-SKDDVGKNV 1553
Cdd:pfam02463  797 KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELeelALELKEEQKLEKLAEEELERLEEEITKEeLLQELLLKE 876
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1554 HELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNmqALKAQHERELQNRDDANDDKKKLLS---KQVRELEAE 1630
Cdd:pfam02463  877 EELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKEN--EIEERIKEEAEILLKYEEEPEELLLeeaDEKEKEENN 954
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1631 LDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQ 1700
Cdd:pfam02463  955 KEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLE 1024
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
994-1565 2.16e-17

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 89.05  E-value: 2.16e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  994 KLQLEKVSTEAKLKKMEEDLL-VLEDQNSKLHKERKLME----ERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDR 1068
Cdd:COG0419    182 EAKAKIEELEGQLSELLEDIEdLLEALEEELKELKKLEEiqeeQEEEELEQEIEALEERLAELEEEKERLEELKARLLEI 261
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1069 LKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQaLARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAE 1148
Cdd:COG0419    262 ESLELEALKIREEELRELERLLEELEEKIERLEELEREIEE-LEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEK 340
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1149 LQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHT 1228
Cdd:COG0419    341 LESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELE 420
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1229 SALEELSEQLEQ----SRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERaKAEL 1304
Cdd:COG0419    421 ELERELEELEEEikklEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKE-EAEL 499
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1305 VERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKL---------NLSSRVRQLEEEKAAML 1375
Cdd:COG0419    500 REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQlqqlkeelrQLEDRLQELKELLEELR 579
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1376 EQLEEEEAAKANFSR--QMQSLQQQVMETKKKLEE--DAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRL 1451
Cdd:COG0419    580 LLRTRKEELEELRERlkELKKKLKELEERLSQLEEllQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEEL 659
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1452 QQELDdvtvALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEaDAREKETKVLSLSRALEEALETREEMERQ 1531
Cdd:COG0419    660 EEKVE----ELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELE-ELLKKLGEIEQLIEELESRKAELEELKKE 734
                          570       580       590
                   ....*....|....*....|....*....|....
gi 1033370542 1532 NKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQ 1565
Cdd:COG0419    735 LEKLEKALELLEELREKLGKAGLRADILRNLLAQ 768
PTZ00121 PTZ00121
MAEBL; Provisional
1136-1880 3.98e-17

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 88.66  E-value: 3.98e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1136 LKSLRELQAQLAELQEDMESEKLARAKAEKQRRdlgEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKV 1215
Cdd:PTZ00121  1084 KEDNRADEATEEAFGKAEEAKKTETGKAEEARK---AEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKA 1160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1216 HEAQVLDMRQRHTSALE-ELSEQLEQSRRFKiNLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRA 1294
Cdd:PTZ00121  1161 EDARKAEEARKAEDAKKaEAARKAEEVRKAE-ELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDA 1239
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1295 GEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKdlatveshlqdTQELLQEETRQKlnlSSRVRQLEEEKAAM 1374
Cdd:PTZ00121  1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK-----------ADELKKAEEKKK---ADEAKKAEEKKKAD 1305
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1375 LEQLEEEEAAKAN-FSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQ 1453
Cdd:PTZ00121  1306 EAKKKAEEAKKADeAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1454 ELDDVTVAlDQQRQVVSALEKKQKKFDQMLAEEKLI--SARYAEERDRAEaDAREKETKVLSLSRALEEALETREEMERQ 1531
Cdd:PTZ00121  1386 KAEEKKKA-DEAKKKAEEDKKKADELKKAAAAKKKAdeAKKKAEEKKKAD-EAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1532 NKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELE--DELQATEDGKLRLEVNM--QALKAQHERELQ 1607
Cdd:PTZ00121  1464 KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEAKKADEAKKaeEAKKADEAKKAE 1543
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1608 NRDDANDDKKkllSKQVRELEAELDAERKQRAQAlagRKKLELDLQEAMAQldaANKGRDEAGKQLRKLQAQMK-ELWRE 1686
Cdd:PTZ00121  1544 EKKKADELKK---AEELKKAEEKKKAEEAKKAEE---DKNMALRKAEEAKK---AEEARIEEVMKLYEEEKKMKaEEAKK 1614
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1687 VEEARAAREEifIQSRESEKK----LKNLEAELLQLQEDL-AASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLE 1761
Cdd:PTZ00121  1615 AEEAKIKAEE--LKKAEEEKKkveqLKKKEAEEKKKAEELkKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1762 ArigqlEEELDEEQSNMELLNDRYRKLSMQVETLTTElgaERSFSQKTENARQQLE---RQNKDLRAKLGE---MDSSVK 1835
Cdd:PTZ00121  1693 A-----LKKEAEEAKKAEELKKKEAEEKKKAEELKKA---EEENKIKAEEAKKEAEedkKKAEEAKKDEEEkkkIAHLKK 1764
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*
gi 1033370542 1836 SKYKMAIATLESKVAQLEEQLEQESRERILSgklvrrAEKKLKEV 1880
Cdd:PTZ00121  1765 EEEKKAEEIRKEKEAVIEEELDEEDEKRRME------VDKKIKDI 1803
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1162-1714 5.32e-17

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 87.43  E-value: 5.32e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1162 KAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVheaqvldmrqrhtsaLEELSEQLEQS 1241
Cdd:PRK03918   162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSE---------------LPELREELEKL 226
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1242 RRFKINLEKTKQALEG---ENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGE--RAKAELVERLVKLQNE-- 1314
Cdd:PRK03918   227 EKEVKELEELKEEIEElekELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSEFYEEyl 306
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1315 --LDGVSGTLGSTESK---TIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANfs 1389
Cdd:PRK03918   307 deLREIEKRLSRLEEEingIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL-- 384
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1390 rqmqslqqQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGR-------------------TR 1450
Cdd:PRK03918   385 --------TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgrelteehrkellEE 456
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1451 LQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMER 1530
Cdd:PRK03918   457 YTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK 536
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1531 QNKQLRA------EMDDLVSSKDDVGKNVHELERFKRALEQQVQEMR-AQMEELEDELQATE----------DGKLRLEV 1593
Cdd:PRK03918   537 LKGEIKSlkkeleKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEpfyneylelkDAEKELER 616
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1594 NMQALKAQHERELQNRDDANDDKKKL--LSKQVRELEAELDAERKQRAQALagRKKLELDLQEAMAQLDAANKGRDEAGK 1671
Cdd:PRK03918   617 EEKELKKLEEELDKAFEELAETEKRLeeLRKELEELEKKYSEEEYEELREE--YLELSRELAGLRAELEELEKRREEIKK 694
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*.
gi 1033370542 1672 QLRKLQAQ---MKELWREVEEARAAREEIfIQSRESEKKLKNLEAE 1714
Cdd:PRK03918   695 TLEKLKEEleeREKAKKELEKLEKALERV-EELREKVKKYKALLKE 739
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1390-1965 1.31e-16

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 86.65  E-value: 1.31e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1390 RQMQSLQQQVMETKKKLEedagVAEAIEEARRR-AAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQV 1468
Cdd:TIGR02168  200 RQLKSLERQAEKAERYKE----LKAELRELELAlLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1469 VSALEKK----QKKFDQMLAEEKLISAR---YAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDD 1541
Cdd:TIGR02168  276 VSELEEEieelQKELYALANEISRLEQQkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1542 LVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANddkKKLLS 1621
Cdd:TIGR02168  356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL---KKLEE 432
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1622 KQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEI--FI 1699
Cdd:TIGR02168  433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVkaLL 512
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1700 QSRESEKKLKNLEAELLQLQED----LAASERAKRQA-----QQERDDLADELANGNSGKSALLDEKRHLEARI-GQLEE 1769
Cdd:TIGR02168  513 KNQSGLSGILGVLSELISVDEGyeaaIEAALGGRLQAvvvenLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIqGNDRE 592
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1770 ELDEEQSNMELLND------RYRKL-------SMQVETLTT------ELGAERSF-----------------SQKTENAR 1813
Cdd:TIGR02168  593 ILKNIEGFLGVAKDlvkfdpKLRKAlsyllggVLVVDDLDNalelakKLRPGYRIvtldgdlvrpggvitggSAKTNSSI 672
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1814 QQLERQNKDLRAKLGEMDSSVKSKyKMAIATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQ 1893
Cdd:TIGR02168  673 LERRREIEELEEKIEELEEKIAEL-EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1033370542 1894 YKDQVEKGHLRLKQLKRQLEEAEEEASRANASRRRMQRELEDVTESAESMNREVTSLRNRLSKVERRQRKRT 1965
Cdd:TIGR02168  752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
PTZ00121 PTZ00121
MAEBL; Provisional
1198-1964 1.59e-16

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 86.73  E-value: 1.59e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1198 REQEVTELKKTIEEEVKVH-EAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQK--EVKLLQAAKL 1274
Cdd:PTZ00121  1043 KEKDIIDEDIDGNHEGKAEaKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKaeEARKAEEAKK 1122
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1275 ESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVeshlQDTQELLQEET 1354
Cdd:PTZ00121  1123 KAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEV----RKAEELRKAED 1198
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1355 RQKLnlsSRVRQLEEEKAAmleqleeEEAAKANFSRQMQSLQQqvMETKKKLEEDAGVAEaiEEARRRAAKDLESLSVRY 1434
Cdd:PTZ00121  1199 ARKA---EAARKAEEERKA-------EEARKAEDAKKAEAVKK--AEEAKKDAEEAKKAE--EERNNEEIRKFEEARMAH 1264
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1435 EERVQACDKLEKGRtrlqqelddvtvaldQQRQVVSALEKKQkkfdqmlAEEklisARYAEERDRAEADAREKETKvlsl 1514
Cdd:PTZ00121  1265 FARRQAAIKAEEAR---------------KADELKKAEEKKK-------ADE----AKKAEEKKKADEAKKKAEEA---- 1314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1515 sRALEEALETREEMERQNKQLRAEMDDlVSSKDDVGKNvhELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVN 1594
Cdd:PTZ00121  1315 -KKADEAKKKAEEAKKKADAAKKKAEE-AKKAAEAAKA--EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1595 MQALKAQHERElQNRDDANDDKKKLLSKQVRElEAELDAERKQRAQALagRKKLELDLQEAMAQLDAANKGRDEAGKQLR 1674
Cdd:PTZ00121  1391 KKADEAKKKAE-EDKKKADELKKAAAAKKKAD-EAKKKAEEKKKADEA--KKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1675 KLQAQMKELWREVEEARAArEEIFIQSRESEKKlknleaellqlQEDLAASERAKRQAQQERDdlADELANGNSGKSAll 1754
Cdd:PTZ00121  1467 EEAKKADEAKKKAEEAKKA-DEAKKKAEEAKKK-----------ADEAKKAAEAKKKADEAKK--AEEAKKADEAKKA-- 1530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1755 DEKRHLEarigqleeeldeeqsnmELLNDRYRKLSMQVETLTTELGAERSfsQKTENARQQLERQNKDLRaKLGEMDSSV 1834
Cdd:PTZ00121  1531 EEAKKAD-----------------EAKKAEEKKKADELKKAEELKKAEEK--KKAEEAKKAEEDKNMALR-KAEEAKKAE 1590
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1835 KSKYKMAIATLESKVAQLEEQLEQESRERILSGKLVRRAE--KKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQL 1912
Cdd:PTZ00121  1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEekKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1033370542 1913 EEAEEEASRAnasrrrmQRELEDVTESAESMNREVTSLRN--RLSKVERRQRKR 1964
Cdd:PTZ00121  1671 EEDKKKAEEA-------KKAEEDEKKAAEALKKEAEEAKKaeELKKKEAEEKKK 1717
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
872-1475 1.24e-15

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 83.29  E-value: 1.24e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  872 QVTRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTilaEQLQAETELFAEAEEMRARLaarKQELEDILh 951
Cdd:pfam01576  514 NVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALT---QRLEEKAAAYDKLEKTKNRL---QQELDDLL- 586
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  952 eleSRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLME 1031
Cdd:pfam01576  587 ---VDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETKALSLARALEEALDAKEELERQNKQLR 663
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1032 ERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADM-------EDRLKKEEKGRQELE--------KLKRKLDG--EAGD-- 1092
Cdd:pfam01576  664 AEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMktqleelEDELQATEDAKLRLEvnmqalkaQFERDLQArdEQGEek 743
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1093 ---LQEQVAELQQQLEELR----QALARK---EAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAK 1162
Cdd:pfam01576  744 rrqLVKQVRELEAELEDERkqraQAVAAKkklELDLKELEAQIEAANKGRDEAVKQLKKLQAQMKDLQRELDEARASRDE 823
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1163 AEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQ---RHTSALEELSEQLE 1239
Cdd:pfam01576  824 IFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSALLDEKRRleaRIAQLEEELEEEQS 903
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1240 QSRRFKINLEKTKQALEGENAEMQKEVKLLQaaklESEQRRKKLEGQVQELQLRAGEGErakaelverlvklqneldgvs 1319
Cdd:pfam01576  904 NTELLNDRLRKLTLQVEQLTTELAAERSTSQ----KSESARQQLERQNKELKAKLQEME--------------------- 958
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1320 GTLGSTESKTIklakdlATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQV 1399
Cdd:pfam01576  959 GTVKSKYKSSI------AALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRL 1032
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1400 METKKKLEedagvaEAIEEARRRAAkdleslsvryeervqacdklekGRTRLQQELDDVTVALDQQRQVVSALEKK 1475
Cdd:pfam01576 1033 KQLKRQLE------EAEEEASRANA----------------------ARRKLQRELDDATESAEAMNREVTTLRSK 1080
PTZ00121 PTZ00121
MAEBL; Provisional
854-1570 1.25e-15

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 83.65  E-value: 1.25e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  854 KLRHWQWWRLFTKVKPLLQVTRQDEVM---QAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEktilAEQLQAETELFA 930
Cdd:PTZ00121  1247 EERNNEEIRKFEEARMAHFARRQAAIKaeeARKADELKKAEEKKKADEAKKAEEKKKADEAKKK----AEEAKKADEAKK 1322
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  931 EAEEMRARLAARKQELEDILHELESRVEEEEERCQQLQGDKKKMQ-QHVQDLEEQLEEeEAARQKLQLEKVSTEAKlKKM 1009
Cdd:PTZ00121  1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaAEKKKEEAKKKA-DAAKKKAEEKKKADEAK-KKA 1400
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1010 EEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEE----EEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRK 1085
Cdd:PTZ00121  1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEakkkAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1086 LDGEAGDLQEQVAELQQQLEELRQAlarKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEK 1165
Cdd:PTZ00121  1481 EAKKADEAKKKAEEAKKKADEAKKA---AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1166 QRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSAlEELSEQLEQSRRF- 1244
Cdd:PTZ00121  1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA-EELKKAEEEKKKVe 1636
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1245 ---KINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQElqlragEGERAKAELVERLVKLQNELDGVSgt 1321
Cdd:PTZ00121  1637 qlkKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE------EDEKKAAEALKKEAEEAKKAEELK-- 1708
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1322 lgSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQvmE 1401
Cdd:PTZ00121  1709 --KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE--E 1784
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1402 TKKKLEEDAGVAEaieearrRAAKDLES-LSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFD 1480
Cdd:PTZ00121  1785 LDEEDEKRRMEVD-------KKIKDIFDnFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKN 1857
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1481 QMLAEEKLISARYAEERDRAEADAREKETkvlslSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGknvhelERFK 1560
Cdd:PTZ00121  1858 NENGEDGNKEADFNKEKDLKEDDEEEIEE-----ADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKD------EYIK 1926
                          730
                   ....*....|
gi 1033370542 1561 RALEQQVQEM 1570
Cdd:PTZ00121  1927 RDAEETREEI 1936
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1331-1897 1.22e-14

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 79.80  E-value: 1.22e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1331 KLAKDLATVESHLQDTQELLQEETRQKLNLSS-RVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEED 1409
Cdd:COG0419    189 ELEGQLSELLEDIEDLLEALEEELKELKKLEEiQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEA 268
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1410 AGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLI 1489
Cdd:COG0419    269 LKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1490 SARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQE 1569
Cdd:COG0419    349 AEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1570 MRAQMEELEDELQATEDGKLRLEVNMQA-------------LKAQHERELQNRDDANDDKKKLLSKQVRELEAELDAERK 1636
Cdd:COG0419    429 LEEEIKKLEEQINQLESKELMIAELAGAgekcpvcgqelpeEHEKELLELYELELEELEEELSREKEEAELREEIEELEK 508
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1637 QRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLR---------KLQAQMKELWREVEEARAAREEiFIQSRESEKK 1707
Cdd:COG0419    509 ELRELEEELIELLELEEALKEELEEKLEKLENLLEELEelkeklqlqQLKEELRQLEDRLQELKELLEE-LRLLRTRKEE 587
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1708 LKNLEAELLQLQEDLAASERAKRQAQQERDDLadELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRK 1787
Cdd:COG0419    588 LEELRERLKELKKKLKELEERLSQLEELLQSL--ELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEE 665
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1788 LSMQVETLTTELGAERSFSQKTENArQQLERQNKDLRAKLGEMDSSvKSKYKMAIATLESKVAQLEEQLEQESRERILsG 1867
Cdd:COG0419    666 LEAEIRRELQRIENEEQLEEKLEEL-EQLEEELEQLREELEELLKK-LGEIEQLIEELESRKAELEELKKELEKLEKA-L 742
                          570       580       590
                   ....*....|....*....|....*....|
gi 1033370542 1868 KLVRRAEKKLKEVILQVDEERRNADQYKDQ 1897
Cdd:COG0419    743 ELLEELREKLGKAGLRADILRNLLAQIEAE 772
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
862-1430 1.68e-14

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 79.34  E-value: 1.68e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  862 RLFTKVKPLLQVTRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAA 941
Cdd:PRK03918   194 LIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKK 273
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  942 RKQELEDILhelesrveeeeERCQQLQGDKKKMqqhvqdleeqleeeeaarQKLQLEKVSTEAKLKKMEEDLlvledqnS 1021
Cdd:PRK03918   274 EIEELEEKV-----------KELKELKEKAEEY------------------IKLSEFYEEYLDELREIEKRL-------S 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1022 KLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAvmadMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQ 1101
Cdd:PRK03918   318 RLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEE----LEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEL 393
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1102 QQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQL----AELQEDMESEKLARAKAE-----KQRRDLGE 1172
Cdd:PRK03918   394 EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAElkrieKELKEIEE 473
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1173 ELEALKTELEDTLDSTAAQQELRskREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLE-QSRRFKINLEKt 1251
Cdd:PRK03918   474 KERKLRKELRELEKVLKKESELI--KLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKgEIKSLKKELEK- 550
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1252 KQALEGENAEMQKEVKLLQA--AKLESEQRR------KKLEGQVQELQ------LRAGEGERAKAELVERLVKLQNELDG 1317
Cdd:PRK03918   551 LEELKKKLAELEKKLDELEEelAELLKELEElgfesvEELEERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDK 630
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1318 VSGTLGSTESKTIKLAKDLATVESHLqdTQELLQEETRQKLNLSSRVRQLEEEKaamleqleeeeaakanfsRQMQSLQQ 1397
Cdd:PRK03918   631 AFEELAETEKRLEELRKELEELEKKY--SEEEYEELREEYLELSRELAGLRAEL------------------EELEKRRE 690
                          570       580       590
                   ....*....|....*....|....*....|...
gi 1033370542 1398 QVMETKKKLEEDagvaeaiEEARRRAAKDLESL 1430
Cdd:PRK03918   691 EIKKTLEKLKEE-------LEEREKAKKELEKL 716
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1393-1899 4.25e-14

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 78.16  E-value: 4.25e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1393 QSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSV---RYEERvqacdklekgrtrlQQELDDVTVALDQQRQVV 1469
Cdd:PRK02224   202 KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEvleEHEER--------------REELETLEAEIEDLRETI 267
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1470 SALEKKQKKFDQMLAEEKLISARYAEERDRAEADAreketkvlSLSRALEEALETR-EEMERQNKQLRAEMDDLVSSKDD 1548
Cdd:PRK02224   268 AETEREREELAEEVRDLRERLEELEEERDDLLAEA--------GLDDADAEAVEARrEELEDRDEELRDRLEECRVAAQA 339
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1549 VGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDgklrlevnmqalkAQHERElqnrddanddkkkllsKQVRELE 1628
Cdd:PRK02224   340 HNEEAESLREDADDLEERAEELREEAAELESELEEARE-------------AVEDRR----------------EEIEELE 390
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1629 AELDAERKQRAQAlagrkklELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREE------------ 1696
Cdd:PRK02224   391 EEIEELRERFGDA-------PVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpveg 463
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1697 --IFIQSRESEKKLKNLEAELLQLQEDLAASErakrqaqqERDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEE 1774
Cdd:PRK02224   464 spHVETIEEDRERVEELEAELEDLEEEVEEVE--------ERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK 535
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1775 QSNMELLNDRyrklsmqVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSSVKSKYKMA-----IATLESKV 1849
Cdd:PRK02224   536 RERAEELRER-------AAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRtllaaIADAEDEI 608
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542 1850 AQLEEQLEQ------ESRERiLSGKLVRRAEKKLK---EVILQVDEERRNADQYKDQVE 1899
Cdd:PRK02224   609 ERLREKREAlaelndERRER-LAEKRERKRELEAEfdeARIEEAREDKERAEEYLEQVE 666
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
1050-1739 7.08e-14

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 77.57  E-value: 7.08e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1050 SLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGE--------AGDLQEQVAELQQQLEELRQALARKEAELQAA 1121
Cdd:pfam12128  259 RLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQwkekrdelNGELSAADAAVAKDRSELEALEDQHGAFLDAD 338
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1122 LARVEDEAAQKNAVLKSLRELQAQLAEL---QEDMESEKLARAKAEKQR--RDLG----------EELEALKTELEDTLD 1186
Cdd:pfam12128  339 IETAAADQEQLPSWQSELENLEERLKALtgkHQDVTAKYNRRRSKIKEQnnRDIAgikdklakirEARDRQLAVAEDDLQ 418
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1187 stAAQQELRSKREQEVTELKktIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQsrrFKINLEKTKQALEGENAEMQKEV 1266
Cdd:pfam12128  419 --ALESELREQLEAGKLEFN--EEEYRLKSRLGELKLRLNQATATPELLLQLEN---FDERIERAREEQEAANAEVERLQ 491
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1267 KLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVER----LVKLQNELDGVSGTLGSTESKTIKLAKDLATVESH 1342
Cdd:pfam12128  492 SELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQagtlLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWD 571
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1343 LQDTQEL------LQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAI 1416
Cdd:pfam12128  572 GSVGGELnlygvkLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNA 651
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1417 EEARRRAAKDLESLSvryeervqacDKLEKGRTRLQQELDDVTVALDQQRQVvsaLEKKQKKFDQMLAEEKLisaryaEE 1496
Cdd:pfam12128  652 RLDLRRLFDEKQSEK----------DKKNKALAERKDSANERLNSLEAQLKQ---LDKKHQAWLEEQKEQKR------EA 712
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1497 RDRAEADARE-KETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQME 1575
Cdd:pfam12128  713 RTEKQAYWQVvEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQ 792
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1576 ELedelqatedgkLRLEVNMQALKAQHERELQNRddanddkKKLLSKQVRELEAELdaeRKQRAQAlagrkklELDLQEA 1655
Cdd:pfam12128  793 EV-----------LRYFDWYQETWLQRRPRLATQ-------LSNIERAISELQQQL---ARLIADT-------KLRRAKL 844
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1656 MAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSResekklknleaeLLQLQEDLAASERAKRQAQQE 1735
Cdd:pfam12128  845 EMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGER------------LAQLEDLKLKRDYLSESVKKY 912

                   ....
gi 1033370542 1736 RDDL 1739
Cdd:pfam12128  913 VEHF 916
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
992-1735 7.15e-14

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 77.45  E-value: 7.15e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  992 RQKLQLEKVSTEAKlKKMEEDLLvlEDQNSKLHKERKLM---EERLSEFTSHMAEEEEkvkslSKLRNKYEAvmaDMEDR 1068
Cdd:pfam15921  144 RNQLQNTVHELEAA-KCLKEDML--NDSNTQIEQLRKMMlshEGVLQEIRSILVDFEE-----ASGKKIYEH---DSMST 212
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1069 LKKEEKGrQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARK-EAELQAALARVEDEAAQKNAVLKSLRE----LQ 1143
Cdd:pfam15921  213 IHFRSLG-SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKiELLLQQHQDRIEQLISEHEVEITGLTEkassAR 291
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1144 AQLAELQEDMES-EKLARAKAEKQRRDLGEelealkteledtLDSTAAQqeLRSkreqEVTELKKTIEEEVKVHEAQVLD 1222
Cdd:pfam15921  292 SQANSIQSQLEIiQEQARNQNSMYMRQLSD------------LESTVSQ--LRS----ELREAKRMYEDKIEELEKQLVL 353
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1223 MRQRHTSALEELSEQLEQSRrfkiNLEKTKQALEGENAEMQKEVKLlqaaklESEQRRK----------KLEGQVQELQL 1292
Cdd:pfam15921  354 ANSELTEARTERDQFSQESG----NLDDQLQKLLADLHKREKELSL------EKEQNKRlwdrdtgnsiTIDHLRRELDD 423
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1293 RAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKA 1372
Cdd:pfam15921  424 RNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTA 503
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1373 AMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEdagvaeaiEEARRRAAKDLESLSVRYEERvqacdklEKGRTRLQ 1452
Cdd:pfam15921  504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE--------GDHLRNVQTECEALKLQMAEK-------DKVIEILR 568
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1453 QELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQN 1532
Cdd:pfam15921  569 QQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV 648
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1533 KQLRAEMDDLV----SSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDgklRLEVNMQALKAQHERELQN 1608
Cdd:pfam15921  649 KDIKQERDQLLnevkTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS---ELEQTRNTLKSMEGSDGHA 725
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1609 RDDANDDKKKLLSKqvreleaeldaerkqRAQALAGRKKLELdLQEAMAQldaANKGRDEAGKQLRKLQAQMKELWREVE 1688
Cdd:pfam15921  726 MKVAMGMQKQITAK---------------RGQIDALQSKIQF-LEEAMTN---ANKEKHFLKEEKNKLSQELSTVATEKN 786
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*..
gi 1033370542 1689 EARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQE 1735
Cdd:pfam15921  787 KMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833
mukB PRK04863
chromosome partition protein MukB;
1025-1788 1.48e-13

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 76.53  E-value: 1.48e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1025 KERKLMEERLSEFtshMAEEEEKVKSLSKLRNKYEAVmadmEDRLKKEEKGRQELEKLKRkldgeagdLQEQVAELQQQL 1104
Cdd:PRK04863   300 RQLAAEQYRLVEM---ARELAELNEAESDLEQDYQAA----SDHLNLVQTALRQQEKIER--------YQADLEELEERL 364
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1105 EElrQALARKEAELQAALARVEDEAAQKnavlkSLRELQAQLAELQEDMESEKlARAKAEKQRRDLGEELEALKTELEDT 1184
Cdd:PRK04863   365 EE--QNEVVEEADEQQEENEARAEAAEE-----EVDELKSQLADYQQALDVQQ-TRAIQYQQAVQALERAKQLCGLPDLT 436
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1185 LDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAqvldMRQRHTSALEELS----------------EQLEQSRRFKINL 1248
Cdd:PRK04863   437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQA----AHSQFEQAYQLVRkiagevsrseawdvarELLRRLREQRHLA 512
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1249 EKTkQALEGENAEMQKEvkllqaakLESEQRrkkLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGStesk 1328
Cdd:PRK04863   513 EQL-QQLRMRLSELEQR--------LRQQQR---AERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSE---- 576
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1329 tikLAKDLATVESHLQDTQELLQEETRQK---LNLSSRVRQLEEEKAAMLEQleeeeaakanfSRQMQSLQQQVMETKKK 1405
Cdd:PRK04863   577 ---ARERRMALRQQLEQLQARIQRLAARApawLAAQDALARLREQSGEEFED-----------SQDVTEYMQQLLERERE 642
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1406 LEEdagVAEAIEEARRRAAKDLESLSVR---YEERVQA-CDKLekGRTRLQQELDDVTV--------ALDQQRQ--VVSA 1471
Cdd:PRK04863   643 LTV---ERDELAARKQALDEEIERLSQPggsEDPRLNAlAERF--GGVLLSEIYDDVSLedapyfsaLYGPARHaiVVPD 717
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1472 LEKKQkkfDQMLAEEKLISARYAEERD-------RAEADAREKETKV------LSLSRALEEALETREEMERQNKQLRAE 1538
Cdd:PRK04863   718 LSDAA---EQLAGLEDCPEDLYLIEGDpdsfddsVFSVEELEKAVVVkiadrqWRYSRFPEVPLFGRAAREKRIEQLRAE 794
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1539 MDDLVSSKDDVGKNVHELER----FKRAL------------EQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQH 1602
Cdd:PRK04863   795 REELAERYATLSFDVQKLQRlhqaFSRFIgshlavafeadpEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGL 874
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1603 ERELQNRDDANDDKKKLLSKQVRELEAELD----AER--KQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKL 1676
Cdd:PRK04863   875 SALNRLLPRLNLLADETLADRVEEIREQLDeaeeAKRfvQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDA 954
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1677 QAQ----------------------------MKELWRE-VEEARAAREEIFIQSRESEKKLknleAELLQLQEDLAASER 1727
Cdd:PRK04863   955 KQQafaltevvqrrahfsyedaaemlaknsdLNEKLRQrLEQAEQERTRAREQLRQAQAQL----AQYNQVLASLKSSYD 1030
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1728 AKRQ----AQQERDDL-----ADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKL 1788
Cdd:PRK04863  1031 AKRQmlqeLKQELQDLgvpadSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKL 1100
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1559-1960 1.50e-13

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 76.65  E-value: 1.50e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1559 FKRALEQQVQEMrAQMEELEDELQATEDgklrlEVNMQALKAQHERELQNRDDANDDKK-----KLLSKQVRELEAELDA 1633
Cdd:TIGR02169  168 FDRKKEKALEEL-EEVEENIERLDLIID-----EKRQQLERLRREREKAERYQALLKEKreyegYELLKEKEALERQKEA 241
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1634 ERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKL--------QAQMKELWREVEEARAAREEIFIQSRESE 1705
Cdd:TIGR02169  242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAE 321
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1706 KKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANgnsgksaLLDEKRHLEARIGQLEEEldeeqsnmellNDRY 1785
Cdd:TIGR02169  322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE-------LKEELEDLRAELEEVDKE-----------FAET 383
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1786 RKLSMQVETLTTELGAERSFSQKTENARQQLERQnkdLRAKLGEMdssvkskyKMAIATLESKVAQLEEQLEQESREril 1865
Cdd:TIGR02169  384 RDELKDYREKLEKLKREINELKRELDRLQEELQR---LSEELADL--------NAAIAGIEAKINELEEEKEDKALE--- 449
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1866 sgklVRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLeeaEEEASRANASRRRmQRELEDVTESAESMNR 1945
Cdd:TIGR02169  450 ----IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL---AEAEAQARASEER-VRGGRAVEEVLKASIQ 521
                          410
                   ....*....|....*
gi 1033370542 1946 EVTSLRNRLSKVERR 1960
Cdd:TIGR02169  522 GVHGTVAQLGSVGER 536
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
886-1370 1.71e-13

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 76.23  E-value: 1.71e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  886 ELQKVQEKHTKTqmDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHELESRVEEEEERCQ 965
Cdd:PRK02224   226 EEQREQARETRD--EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG 303
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  966 QLQGDKKKMQQHVQDLEeqlEEEEAARQKLQLEKVSTEAKLKKME---EDLLVLEDQNSKLHKERKLMEERLSEFTSHMA 1042
Cdd:PRK02224   304 LDDADAEAVEARREELE---DRDEELRDRLEECRVAAQAHNEEAEslrEDADDLEERAEELREEAAELESELEEAREAVE 380
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1043 EEEEKVKSLsklrnkyEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAAL 1122
Cdd:PRK02224   381 DRREEIEEL-------EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGK 453
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1123 ARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKqRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEV 1202
Cdd:PRK02224   454 CPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE-RLERAEDLVEAEDRIERLEERREDLEELIAERRETI 532
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1203 TELKKTIE---EEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAemqkeVKLLQAAKLESEQR 1279
Cdd:PRK02224   533 EEKRERAEelrERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-----IRTLLAAIADAEDE 607
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1280 RKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDgvsgtlgstESKTIKLAKDLATVESHLQDTQELLQEETRQKLN 1359
Cdd:PRK02224   608 IERLREKREALAELNDERRERLAEKRERKRELEAEFD---------EARIEEAREDKERAEEYLEQVEEKLDELREERDD 678
                          490
                   ....*....|.
gi 1033370542 1360 LSSRVRQLEEE 1370
Cdd:PRK02224   679 LQAEIGAVENE 689
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
872-1715 3.18e-13

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 75.47  E-value: 3.18e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  872 QVTRQDEVMQAKAVELQKVQEKhtktQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRAR-LAARKQELEDIL 950
Cdd:TIGR00606  232 QLESSREIVKSYENELDPLKNR----LKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKvFQGTDEQLNDLY 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  951 HELESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLM 1030
Cdd:TIGR00606  308 HNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPF 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1031 EERLSEFTSHMAEE--EEKVKSLSKLrnkyeavMADMEDRLKKEEKGRQELE----KLKRKLDGEAGDLQEQVAELQQQL 1104
Cdd:TIGR00606  388 SERQIKNFHTLVIErqEDEAKTAAQL-------CADLQSKERLKQEQADEIRdekkGLGRTIELKKEILEKKQEELKFVI 460
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1105 EELRQA------LARKEAELQAALArvEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQrrdLGEELEALK 1178
Cdd:TIGR00606  461 KELQQLegssdrILELDQELRKAER--ELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ---LNHHTTTRT 535
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1179 TELEDTLDSTAAQQELRSKREQEVTEL---------KKTIEEEVKVHEAQVLDMRQRHTSALEELsEQLEQSRRFKINLE 1249
Cdd:TIGR00606  536 QMEMLTKDKMDKDEQIRKIKSRHSDELtsllgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKEL-ASLEQNKNHINNEL 614
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1250 KTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGE------------------------RAKAELV 1305
Cdd:TIGR00606  615 ESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAvysqfitqltdenqsccpvcqrvfQTEAELQ 694
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1306 ERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAamleqleeeeAAK 1385
Cdd:TIGR00606  695 EFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQ----------RLK 764
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1386 ANFSRQMQSLQQQVMETK--KKLEEDAGVAEAIEEARRRAAKDLESLSVRYE--ERVQACDKLEKGRTRLQQELDDVTVA 1461
Cdd:TIGR00606  765 NDIEEQETLLGTIMPEEEsaKVCLTDVTIMERFQMELKDVERKIAQQAAKLQgsDLDRTVQQVNQEKQEKQHELDTVVSK 844
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1462 LDQQRQVVSALEKKQKKFDQMLAE---EKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAE 1538
Cdd:TIGR00606  845 IELNRKLIQDQQEQIQHLKSKTNElksEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1539 MDDLVSSKDDVGKNVH-ELERFKRALEQQVQEMRAQMEELEDelqATEDGKLRLEVNMQALKAQHERELQNRDDANDDkk 1617
Cdd:TIGR00606  925 KEELISSKETSNKKAQdKVNDIKEKVKNIHGYMKDIENKIQD---GKDDYLKQKETELNTVNAQLEECEKHQEKINED-- 999
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1618 kllskqVRELEAELDAERKQRA--QALAGRKKLELDLQEAMAQLDAANKGRDEagKQLRKLQAQMKELWREVEEARAARE 1695
Cdd:TIGR00606 1000 ------MRLMRQDIDTQKIQERwlQDNLTLRKRENELKEVEEELKQHLKEMGQ--MQVLQMKQEHQKLEENIDLIKRNHV 1071
                          890       900
                   ....*....|....*....|
gi 1033370542 1696 EIFIQSRESEKKLKNLEAEL 1715
Cdd:TIGR00606 1072 LALGRQKGYEKEIKHFKKEL 1091
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
991-1820 4.27e-13

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 75.08  E-value: 4.27e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  991 ARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAV------MAD 1064
Cdd:TIGR00606  187 ALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIehnlskIMK 266
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1065 MEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAElqaALARVEDEAAQKNavlKSLRELQA 1144
Cdd:TIGR00606  267 LDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKER---ELVDCQRELEKLN---KERRLLNQ 340
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1145 QLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEdtLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMR 1224
Cdd:TIGR00606  341 EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLE--LDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQ 418
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1225 QRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAK------LESEQRRKKLEGQ---------VQE 1289
Cdd:TIGR00606  419 SKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEgssdriLELDQELRKAERElskaeknslTET 498
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1290 LQLRAGEGERAKAELVERLVKLQNELDGVSGTlGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKL----------- 1358
Cdd:TIGR00606  499 LKKEVKSLQNEKADLDRKLRKLDQEMEQLNHH-TTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkkqled 577
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1359 ---NLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVA------EAIEEARRRAAKDLES 1429
Cdd:TIGR00606  578 wlhSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQdeesdlERLKEEIEKSSKQRAM 657
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1430 LSVR---YEERVQ-----------ACDKLEKGRTRLQQELDDVT----VALDQQRQVVSALEKKQKKFDQMLAeekLISA 1491
Cdd:TIGR00606  658 LAGAtavYSQFITqltdenqsccpVCQRVFQTEAELQEFISDLQsklrLAPDKLKSTESELKKKEKRRDEMLG---LAPG 734
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1492 RyAEERDRAEADAREKETKVLSLSRALEealETREEMERQNKQLRAEMDDLVSSKdDVGKNVHELERFkralEQQVQEMR 1571
Cdd:TIGR00606  735 R-QSIIDLKEKEIPELRNKLQKVNRDIQ---RLKNDIEEQETLLGTIMPEEESAK-VCLTDVTIMERF----QMELKDVE 805
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1572 AQMEELEDELQATEDGKLRLEVNMQALKAQHE-RELQNRDDANDDKKKLLSKQVRELEA---ELDAERKQRAQALAGRKK 1647
Cdd:TIGR00606  806 RKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHElDTVVSKIELNRKLIQDQQEQIQHLKSktnELKSEKLQIGTNLQRRQQ 885
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1648 LELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEifiQSRESEKKLKNLEAELLQL---QEDL-- 1722
Cdd:TIGR00606  886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET---SNKKAQDKVNDIKEKVKNIhgyMKDIen 962
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1723 ---AASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELL--NDRYRKLSMQVETLTT 1797
Cdd:TIGR00606  963 kiqDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRkrENELKEVEEELKQHLK 1042
                          890       900
                   ....*....|....*....|...
gi 1033370542 1798 ELGAERSFSQKTENARQQLERQN 1820
Cdd:TIGR00606 1043 EMGQMQVLQMKQEHQKLEENIDL 1065
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
1005-1712 3.18e-12

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 72.31  E-value: 3.18e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1005 KLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMaeeEEKVKSLSKLRNKYEAVMADMEDRLKK----EEKGRQELE 1080
Cdd:TIGR00618  174 PLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCT---PCMPDTYHERKQVLEKELKHLREALQQtqqsHAYLTQKRE 250
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1081 KL--KRKLDGEAGDLQEQVAELQQQLEELrqALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKL 1158
Cdd:TIGR00618  251 AQeeQLKKQQLLKQLRARIEELRAQEAVL--EETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLM 328
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1159 ARAKAEKQRRDLGEELEALKTELedtldstaaQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEE---LS 1235
Cdd:TIGR00618  329 KRAAHVKQQSSIEEQRRLLQTLH---------SQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKlqsLC 399
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1236 EQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNEl 1315
Cdd:TIGR00618  400 KELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTK- 478
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1316 dgVSGTLGSTESKTIKLAKDL-----------ATVESHLQDTQELLQE-ETRQKLNLSSRVRQLEEEKAAMLEQLEEEEA 1383
Cdd:TIGR00618  479 --EQIHLQETRKKAVVLARLLelqeepcplcgSCIHPNPARQDIDNPGpLTRRMQRGEQTYAQLETSEEDVYHQLTSERK 556
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1384 AKANFSRQMQSLQQqvmETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALD 1463
Cdd:TIGR00618  557 QRASLKEQMQEIQQ---SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLH 633
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1464 QQR------QVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKEtkvlsLSRALEEALETREEMERQNKQLRA 1537
Cdd:TIGR00618  634 LQQcsqelaLKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQK-----MQSEKEQLTYWKEMLAQCQTLLRE 708
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1538 EMDDLVSSKddvgKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKK 1617
Cdd:TIGR00618  709 LETHIEEYD----REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLA 784
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1618 KLLSKQVRELEAELDAERKQRAQAlagRKKLELDLQEAMAQLDAANKGRDEAGKQLR---KLQAQMKELWREVEEARAAR 1694
Cdd:TIGR00618  785 AEIQFFNRLREEDTHLLKTLEAEI---GQEIPSDEDILNLQCETLVQEEEQFLSRLEeksATLGEITHQLLKYEECSKQL 861
                          730
                   ....*....|....*...
gi 1033370542 1695 EEIFIQSRESEKKLKNLE 1712
Cdd:TIGR00618  862 AQLTQEQAKIIQLSDKLN 879
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
900-1374 4.63e-12

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 71.61  E-value: 4.63e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  900 DLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHELESRVEeeeercqqlqgDKKKMQQHVQ 979
Cdd:PRK02224   214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER-----------EREELAEEVR 282
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  980 DLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLhkERKLMEERLS--EFTSHMAEEEEKVKslsklrnk 1057
Cdd:PRK02224   283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL--RDRLEECRVAaqAHNEEAESLREDAD-------- 352
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1058 yeavmaDMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLK 1137
Cdd:PRK02224   353 ------DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRE 426
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1138 SLRELQAQLAELQEDME--SEKLARAK--------AEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKK 1207
Cdd:PRK02224   427 REAELEATLRTARERVEeaEALLEAGKcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE 506
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1208 TiEEEVKVHEAQVLDMRQR---HTSALEELSEQLEQSRRFKINLE-------KTKQALEGENAEMQKEVKLLQAAKLESE 1277
Cdd:PRK02224   507 A-EDRIERLEERREDLEELiaeRRETIEEKRERAEELRERAAELEaeaeekrEAAAEAEEEAEEAREEVAELNSKLAELK 585
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1278 QRRKKLEGQVQELQLRAGEGERAKaELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLAtvESHLQDTQELLQEETRQK 1357
Cdd:PRK02224   586 ERIESLERIRTLLAAIADAEDEIE-RLREKREALAELNDERRERLAEKRERKRELEAEFD--EARIEEAREDKERAEEYL 662
                          490
                   ....*....|....*..
gi 1033370542 1358 LNLSSRVRQLEEEKAAM 1374
Cdd:PRK02224   663 EQVEEKLDELREERDDL 679
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
1286-1960 5.60e-12

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 71.29  E-value: 5.60e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1286 QVQELQLRAGEG----ERAKAELVERLVKLQNELdgvsgtlgstesKTIKLAKDlATVESHLQDTQEllQEETRQKLNls 1361
Cdd:pfam15921   86 QVKDLQRRLNESnelhEKQKFYLRQSVIDLQTKL------------QEMQMERD-AMADIRRRESQS--QEDLRNQLQ-- 148
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1362 SRVRQLEEEKAAMLEQLEeeeaakaNFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLS-VRYEERVQA 1440
Cdd:pfam15921  149 NTVHELEAAKCLKEDMLN-------DSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMStIHFRSLGSA 221
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1441 CDKLE----------KGRT-RLQQELDdvTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERD--RAEADAREK 1507
Cdd:pfam15921  222 ISKILreldteisylKGRIfPVEDQLE--ALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASsaRSQANSIQS 299
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1508 ETKVLSLSRALEEALETRE--EMERQNKQLRAEMDDLVSSKDDvgkNVHELERFKRALEQQVQEMRAQMEELEDELQATE 1585
Cdd:pfam15921  300 QLEIIQEQARNQNSMYMRQlsDLESTVSQLRSELREAKRMYED---KIEELEKQLVLANSELTEARTERDQFSQESGNLD 376
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1586 DGKLRLEVNMQ------ALKAQHERELQNRDDANddkkkllSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQL 1659
Cdd:pfam15921  377 DQLQKLLADLHkrekelSLEKEQNKRLWDRDTGN-------SITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQ 449
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1660 DAANKGRDEAGKQLRKLQAQM---KELWREVEEARAAREeifIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQER 1736
Cdd:pfam15921  450 MAAIQGKNESLEKVSSLTAQLestKEMLRKVVEELTAKK---MTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV 526
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1737 DDLADELAN-GNSGksallDEKRHLEARIGQLEEELDEEQSNMELLNDryrklsmQVETLTTELGAERSFSQKTENARQQ 1815
Cdd:pfam15921  527 DLKLQELQHlKNEG-----DHLRNVQTECEALKLQMAEKDKVIEILRQ-------QIENMTQLVGQHGRTAGAMQVEKAQ 594
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1816 LERQNKDLRAKLGEMdSSVKSKYKMAIATLESKVAQLEEQ---LEQESRERILSGKLVRRAEKKLKEVILQVDEERRNAD 1892
Cdd:pfam15921  595 LEKEINDRRLELQEF-KILKDKKDAKIRELEARVSDLELEkvkLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLS 673
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1893 Q--------YKDQVEKGHLRLKQLKRQLEEAEEEASRANASRRRMQRELEDVTESAESMNREVTSLRNRLSKVERR 1960
Cdd:pfam15921  674 EdyevlkrnFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK 749
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
994-1601 5.76e-12

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 71.20  E-value: 5.76e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  994 KLQLEKVSTEAKLKKMEEDLLVLEDQ----NSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRL 1069
Cdd:TIGR04523  128 KLEKQKKENKKNIDKFLTEIKKKEKEleklNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK 207
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1070 KKEEKgrqeleklKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAel 1149
Cdd:TIGR04523  208 KKIQK--------NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE-- 277
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1150 qedmeseklaraKAEKQRRDLGEELEALKTELEDtldstaaqqeLRSKREQEVTelkKTIEEEVKVHEAQVLDMRQR--- 1226
Cdd:TIGR04523  278 ------------QNNKKIKELEKQLNQLKSEISD----------LNNQKEQDWN---KELKSELKNQEKKLEEIQNQisq 332
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1227 HTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVE 1306
Cdd:TIGR04523  333 NNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE 412
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1307 RLVKLQNELdgvsgtlgstesktiklakdlatvESHLQDTQELLQEETRQKlnlsSRVRQLEEEKAAMLEQLEeeeaaka 1386
Cdd:TIGR04523  413 QIKKLQQEK------------------------ELLEKEIERLKETIIKNN----SEIKDLTNQDSVKELIIK------- 457
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1387 NFSRQMQSLQQQVMETKKKLEEdagvaeaieearrrAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQR 1466
Cdd:TIGR04523  458 NLDNTRESLETQLKVLSRSINK--------------IKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLK 523
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1467 QVVSALEKKQKKFDQMLA--EEKLISaryaeerDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVS 1544
Cdd:TIGR04523  524 EKIEKLESEKKEKESKISdlEDELNK-------DDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEK 596
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542 1545 SKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQ 1601
Cdd:TIGR04523  597 EKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKET 653
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1442-1954 8.04e-12

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 70.56  E-value: 8.04e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1442 DKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLisaryaEERDRAEADAREKETKVLSLSRALEEA 1521
Cdd:COG0419    167 EKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELK------ELKKLEEIQEEQEEEELEQEIEALEER 240
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1522 LETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDE---LQATEDGKLRLEVNMQAL 1598
Cdd:COG0419    241 LAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREieeLEEELEGLRALLEELEEL 320
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1599 KAQHERELQNRDDANDDKKKLlskqvRELEAELDAERKQRAQALAGR-KKLELDLQEAMAQLDAANKGRDEAGKQLRKLQ 1677
Cdd:COG0419    321 LEKLKSLEERLEKLEEKLEKL-----ESELEELAEEKNELAKLLEERlKELEERLEELEKELEKALERLKQLEEAIQELK 395
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1678 AQMKELWREVEEARAAREEIfiqsresEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNS----GKSAL 1753
Cdd:COG0419    396 EELAELSAALEEIQEELEEL-------EKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKcpvcGQELP 468
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1754 LDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSS 1833
Cdd:COG0419    469 EEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEEL 548
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1834 VKSKYKMAI----ATLESKVAQLEEQLEQESRERILSGKLvRRAEKKLKEVILQVDEERRNADQYKDQVEKGHL--RLKQ 1907
Cdd:COG0419    549 KEKLQLQQLkeelRQLEDRLQELKELLEELRLLRTRKEEL-EELRERLKELKKKLKELEERLSQLEELLQSLELseAENE 627
                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*..
gi 1033370542 1908 LKRQLEEAEEEASRANAsRRRMQRELEDVTESAESMNREVTSLRNRL 1954
Cdd:COG0419    628 LEEAEEELESELEKLNL-QAELEELLQAALEELEEKVEELEAEIRRE 673
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
872-1490 8.33e-12

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 70.77  E-value: 8.33e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  872 QVTRQDEVMQA-----KAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQEL 946
Cdd:TIGR00618  244 YLTQKREAQEEqlkkqQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSR 323
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  947 EDILHELESRVEEEEERCQQLQGDKKKMQQH----VQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLL-------- 1014
Cdd:TIGR00618  324 AKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEihirDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLqslckeld 403
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1015 -----------------VLEDQNSKLHKERKLMEERLS--------EFTSHMAEEEEKVKSLSKLRNKyEAVMADMEDRL 1069
Cdd:TIGR00618  404 ilqreqatidtrtsafrDLQGQLAHAKKQQELQQRYAElcaaaitcTAQCEKLEKIHLQESAQSLKER-EQQLQTKEQIH 482
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1070 KKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALArkeaeLQAALARVEDEAAQKNAVLKSLR----ELQAQ 1145
Cdd:TIGR00618  483 LQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGP-----LTRRMQRGEQTYAQLETSEEDVYhqltSERKQ 557
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1146 LAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEvtelkKTIEEEVKVHEAQVLDMRQ 1225
Cdd:TIGR00618  558 RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACE-----QHALLRKLQPEQDLQDVRL 632
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1226 RHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQ-AAKLESEQRRKKLEGQVQELQLRAGEGERAKAEL 1304
Cdd:TIGR00618  633 HLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASrQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETH 712
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1305 VERLVKLQNELDGVSGTLGStesktiklakDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEeeaa 1384
Cdd:TIGR00618  713 IEEYDREFNEIENASSSLGS----------DLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGA---- 778
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1385 kanfsrQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLEslsvryEERVQACDKLEKGRTRLQQELDDVTVALDQ 1464
Cdd:TIGR00618  779 ------ELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDE------DILNLQCETLVQEEEQFLSRLEEKSATLGE 846
                          650       660
                   ....*....|....*....|....*.
gi 1033370542 1465 QRQVVSALEKKQKKFDQMLAEEKLIS 1490
Cdd:TIGR00618  847 ITHQLLKYEECSKQLAQLTQEQAKII 872
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1300-1900 1.00e-11

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 70.48  E-value: 1.00e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1300 AKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQD---TQELLQEETRQKLNLSSRVRQLEEekaamle 1376
Cdd:PRK03918   187 RTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEleeLKEEIEELEKELESLEGSKRKLEE------- 259
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1377 qleeeeaakanfsrQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAaKDLESLSVRYEERVQACDKLEKGRTRLQQELD 1456
Cdd:PRK03918   260 --------------KIRELEERIEELKKEIEELEEKVKELKELKEKA-EEYIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1457 DVtvaldqqRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEA--DAREKETKVLSLSRalEEALETREEMERqnkq 1534
Cdd:PRK03918   325 GI-------EERIKELEEKEERLEELKKKLKELEKRLEELEERHELyeEAKAKKEELERLKK--RLTGLTPEKLEK---- 391
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1535 lraEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDelqatedGKLRLEVNMQALKAQHERELQNRDDAND 1614
Cdd:PRK03918   392 ---ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK-------AKGKCPVCGRELTEEHRKELLEEYTAEL 461
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1615 DKKKLLSKQVRELEAELDAERKQRAQALAGRKKLeLDLQEAMAQLDaankgrdEAGKQLRKLQAqmKELWREVEEARAAR 1694
Cdd:PRK03918   462 KRIEKELKEIEEKERKLRKELRELEKVLKKESEL-IKLKELAEQLK-------ELEEKLKKYNL--EELEKKAEEYEKLK 531
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1695 EEifiqSRESEKKLKNLEAELLQLQE---DLAASERAKRQAQQERDDLADELanGNSGKSALLDekrhLEARIGQleeel 1771
Cdd:PRK03918   532 EK----LIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKEL--EELGFESVEE----LEERLKE----- 596
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1772 deeqsnMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDssvkskykmaiatlESKVAQ 1851
Cdd:PRK03918   597 ------LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE--------------ELEKKY 656
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*....
gi 1033370542 1852 LEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQYKDQVEK 1900
Cdd:PRK03918   657 SEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
840-1340 2.57e-11

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 69.02  E-value: 2.57e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  840 SALKVMQRNCAAYLKLRHWQWWRLFTKVKPLLQVTRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILA 919
Cdd:COG0419    246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLK 325
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  920 EQLQAETELFAEAEEMRARLAARKQELEDILHELESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEK 999
Cdd:COG0419    326 SLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAAL 405
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1000 VSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSH--MAEEEEKVKSL-----SKLRNKYEAVMADMEDRLKKE 1072
Cdd:COG0419    406 EEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKelMIAELAGAGEKcpvcgQELPEEHEKELLELYELELEE 485
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1073 EKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQ-----KNAVLKSLRELQAQLA 1147
Cdd:COG0419    486 LEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEEleelkEKLQLQQLKEELRQLE 565
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1148 ELQEDMESEKLARAK-------------AEKQRRDLGEELEALKTELEDTLDST----------AAQQELRSKREQ--EV 1202
Cdd:COG0419    566 DRLQELKELLEELRLlrtrkeeleelreRLKELKKKLKELEERLSQLEELLQSLelseaeneleEAEEELESELEKlnLQ 645
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1203 TELKKTIEEEVKVHEAQVLDMRQRhTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKevklLQAAKLESEQRRKK 1282
Cdd:COG0419    646 AELEELLQAALEELEEKVEELEAE-IRRELQRIENEEQLEEKLEELEQLEEELEQLREELEE----LLKKLGEIEQLIEE 720
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1283 LEGQVQELQLRAGEGERAKAELverlvklqNELDGVSGTLGSTESKTIKLAKDLATVE 1340
Cdd:COG0419    721 LESRKAELEELKKELEKLEKAL--------ELLEELREKLGKAGLRADILRNLLAQIE 770
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1465-1968 3.54e-11

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 68.63  E-value: 3.54e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1465 QRQVVSALEKKQKKFDQMLAEEKLIsARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVS 1544
Cdd:COG0419    142 QGEFDAFLKSKPKERKEILDELFGL-EKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEE 220
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1545 SKDDVGKnvhelerfkRALEQQVQEMRAQMEELEDELQATEDGKLRLEvNMQALKAQHERELQNRDDANDDKKKLLSKQV 1624
Cdd:COG0419    221 IQEEQEE---------EELEQEIEALEERLAELEEEKERLEELKARLL-EIESLELEALKIREEELRELERLLEELEEKI 290
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1625 RELEaELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFiqsRES 1704
Cdd:COG0419    291 ERLE-ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERL---KEL 366
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1705 EKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIgqleEELDEEQSNMELLNDR 1784
Cdd:COG0419    367 EERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELEREL----EELEEEIKKLEEQINQ 442
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1785 YRKLSMQVETLTTELGAERSFSQKTENARQQ--LERQNKDLRAKLGEMdssvksKYKMAIATLESKVAQLEEQLEQESRE 1862
Cdd:COG0419    443 LESKELMIAELAGAGEKCPVCGQELPEEHEKelLELYELELEELEEEL------SREKEEAELREEIEELEKELRELEEE 516
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1863 RILSGKLVRRAEKKLKEVILQVDEERRNADQYKDQVEKghLRLKQLKRQLEEAEEEASRANASRRRMQR---ELEDVTES 1939
Cdd:COG0419    517 LIELLELEEALKEELEEKLEKLENLLEELEELKEKLQL--QQLKEELRQLEDRLQELKELLEELRLLRTrkeELEELRER 594
                          490       500
                   ....*....|....*....|....*....
gi 1033370542 1940 AESMNREVTSLRNRLSKVERRQRKRTPLS 1968
Cdd:COG0419    595 LKELKKKLKELEERLSQLEELLQSLELSE 623
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
886-1314 8.92e-11

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 67.37  E-value: 8.92e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  886 ELQKVQEKHTKTQMDLKELENKYQQLSEEktiLAEQLQAETELFAEAEEMRAR----------LAARKQELEDILHELES 955
Cdd:PRK02224   252 ELETLEAEIEDLRETIAETEREREELAEE---VRDLRERLEELEEERDDLLAEaglddadaeaVEARREELEDRDEELRD 328
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  956 RVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLS 1035
Cdd:PRK02224   329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1036 EFTSHMAEEEEkvkSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLK-----RKLDGE-----AGDLQEQVAELQQQLE 1105
Cdd:PRK02224   409 NAEDFLEELRE---ERDELREREAELEATLRTARERVEEAEALLEAGKcpecgQPVEGSphvetIEEDRERVEELEAELE 485
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1106 ELRQALARKEAELQAALARVEDEA----------------AQKNAVLKSLRELQAQLAELQEDMESE-KLARAKAEKQRR 1168
Cdd:PRK02224   486 DLEEEVEEVEERLERAEDLVEAEDrierleerredleeliAERRETIEEKRERAEELRERAAELEAEaEEKREAAAEAEE 565
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1169 DLGEELEALKT------ELEDTLDS--------------TAAQQELRSKREQ-------------EVTELKKTIEEEV-- 1213
Cdd:PRK02224   566 EAEEAREEVAElnsklaELKERIESlerirtllaaiadaEDEIERLREKREAlaelnderrerlaEKRERKRELEAEFde 645
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1214 -KVHEAQvlDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQkevkllqaaklESEQRRKKLEGQVQELQL 1292
Cdd:PRK02224   646 aRIEEAR--EDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE-----------ELRERREALENRVEALEA 712
                          490       500       510
                   ....*....|....*....|....*....|...
gi 1033370542 1293 RAGEGE-------RAKAEL----VERLVKLQNE 1314
Cdd:PRK02224   713 LYDEAEelesmygDLRAELrqrnVETLERMLNE 745
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
965-1288 9.96e-11

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 67.07  E-value: 9.96e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  965 QQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKmeEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAE- 1043
Cdd:pfam17380  288 QQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDR--QAAIYAEQERMAMERERELERIRQEERKRELERi 365
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1044 -EEEKVKSLSKLRNKYEAVMadmeDRLKKEEKGRQELE---KLKRKLDGEAGDLQEQVAELQQ---QLEELRQ-ALARKE 1115
Cdd:pfam17380  366 rQEEIAMEISRMRELERLQM----ERQQKNERVRQELEaarKVKILEEERQRKIQQQKVEMEQiraEQEEARQrEVRRLE 441
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1116 AELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLgeeleaLKTELEDTLDSTAAQQELR 1195
Cdd:pfam17380  442 EERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKI------LEKELEERKQAMIEEERKR 515
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1196 SKREQEVTELKKTIEEEvkvheaqvldmrQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAE-MQKEVKLLQAAKl 1274
Cdd:pfam17380  516 KLLEKEMEERQKAIYEE------------ERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEaMEREREMMRQIV- 582
                          330
                   ....*....|....
gi 1033370542 1275 ESEQRRKKLEGQVQ 1288
Cdd:pfam17380  583 ESEKARAEYEATTP 596
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
1004-1691 1.12e-10

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 67.18  E-value: 1.12e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1004 AKLKKMEEDLLVLEDQNSKLHK---ERKLMEERLSEFTS-------HMAEEEEKVKSLSKLRNK---YEAVMADMEDRLK 1070
Cdd:COG4717    188 EKLKQERNEIDEAEKEYATYHKlleSRRAEHARLAELRSelradrdHIRALRDAVELWPRLQEWkqlEQELTRRREELAT 267
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1071 KEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEdeaaQKNAVLKSLRELQAQLAELQ 1150
Cdd:COG4717    268 FPRDGVLRLEKREAHLQKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQ----QLSEIKASAFELTETLAGIE 343
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1151 EDM-ESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKtIEEEVKVHEAQVLDMRQRHTS 1229
Cdd:COG4717    344 ADLrDKEEAAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDE-AEEEARQRLADDEEEVRAGDE 422
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1230 ALEELSEQLEQsrrfKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELqlragegerAKAELVERLV 1309
Cdd:COG4717    423 AREEKIAANSQ----VIDKEEVCNLYDRRDTAWQKQRFLREKQTAFERQKTEHTKIIALRL---------AGMLLVALSR 489
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1310 KLQNELDGVSGT-------LGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNL----SSRVRQ-LEEEKAAMLEQ 1377
Cdd:COG4717    490 LLTSLIFQIIFAvaqivflSAEIKSSSRAVREEKAAVTDIPEELARLLITDELPELAVdllvQSRIRQhWQQLRKALDQL 569
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1378 LEEEEAAKANFSR---QMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLeslsvryEERVQACDKLEKGRTRLQQE 1454
Cdd:COG4717    570 EAAYEALEGRFAAaeaAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDL-------KKLMQKKAELTHQVARLREE 642
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1455 LDDVTVALDQQRQVVSALEKKQKKFdqMLAEEKLISARYAEERDRAEADAREKETKvlslsralEEALETREEMERQNKQ 1534
Cdd:COG4717    643 QAAFEERVEGLLAVLEAQFIDLSTL--FCVQRLRVAAELQKEEARLALEGNIERTK--------ELNDELRAELELHRKE 712
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1535 LRAEMDDLVSSKDDVGKNVHElerfkraLEQQVQEMRAQMEELEDELQATEDGKLRLEVNMqALKAQHERELQNrddaND 1614
Cdd:COG4717    713 ILDLFDCGTADTEDAFREAAR-------EEQQLTQRESRLESLEAQLEGVAAEAYELSASL-DQRELKEEELAL----LE 780
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1615 DKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQL-RKLQAQMKELWREVEEAR 1691
Cdd:COG4717    781 EAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLaVQVLEEALRLFKERRLPA 858
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
864-1581 1.21e-10

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 66.92  E-value: 1.21e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  864 FTKVKPLLQvTRQDEVMQAKAVELQKVQEKHTKT----QMDLKELENKyQQLSEEKTILAEQLQAETELfaeAEEMRARL 939
Cdd:TIGR00618  143 FTRVVLLPQ-GEFAQFLKAKSKEKKELLMNLFPLdqytQLALMEFAKK-KSLHGKAELLTLRSQLLTLC---TPCMPDTY 217
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  940 AARKQELEDILHELESRVeeeeercQQLQGDKKKMQQHVQDLEEQLEEEEAARQKL-QLEKVSTEAKLKKMEEDLLVLED 1018
Cdd:TIGR00618  218 HERKQVLEKELKHLREAL-------QQTQQSHAYLTQKREAQEEQLKKQQLLKQLRaRIEELRAQEAVLEETQERINRAR 290
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1019 QNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVM---ADMEDRLKKEEKGRQELEKLKRKLDGEAG--DL 1093
Cdd:TIGR00618  291 KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVkqqSSIEEQRRLLQTLHSQEIHIRDAHEVATSirEI 370
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1094 QEQVAELQQQLEELRQ---ALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQedmESEKLARAKAEKQRRDL 1170
Cdd:TIGR00618  371 SCQQHTLTQHIHTLQQqktTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAK---KQQELQQRYAELCAAAI 447
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1171 GEELEALKTEledTLDSTAAQQELRSKREQEVTelKKTI---EEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKIN 1247
Cdd:TIGR00618  448 TCTAQCEKLE---KIHLQESAQSLKEREQQLQT--KEQIhlqETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDN 522
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1248 LEKTK---QALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGS 1324
Cdd:TIGR00618  523 PGPLTrrmQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK 602
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1325 TESKTIKLAKDLATVESHLQDTQELLQ-----EETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQV 1399
Cdd:TIGR00618  603 LSEAEDMLACEQHALLRKLQPEQDLQDvrlhlQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAL 682
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1400 METKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALD----QQRQVVSALEKK 1475
Cdd:TIGR00618  683 QKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKelmhQARTVLKARTEA 762
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1476 QKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREE----MERQNKQLRAEMDDLVSSKDDVGK 1551
Cdd:TIGR00618  763 HFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSdediLNLQCETLVQEEEQFLSRLEEKSA 842
                          730       740       750
                   ....*....|....*....|....*....|....*.
gi 1033370542 1552 NVHELERFKRALE------QQVQEMRAQMEELEDEL 1581
Cdd:TIGR00618  843 TLGEITHQLLKYEecskqlAQLTQEQAKIIQLSDKL 878
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
993-1742 1.49e-10

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 66.67  E-value: 1.49e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  993 QKLQLEKVSTEAKLK----KMEEDLLVLEDQNSKLhKERKLMEERLS-EFTSHMAEEEEKVKSLSKLR---NKYEAVMAD 1064
Cdd:pfam05483   88 EKIKKWKVSIEAELKqkenKLQENRKIIEAQRKAI-QELQFENEKVSlKLEEEIQENKDLIKENNATRhlcNLLKETCAR 166
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1065 MEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQK-NAVLKSLRELQ 1143
Cdd:pfam05483  167 SAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEiNDKEKQVSLLL 246
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1144 AQLAELQEDMESEKLArakAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKRE------QEVTELKKTIEEEVKVHE 1217
Cdd:pfam05483  247 IQITEKENKMKDLTFL---LEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEdikmslQRSMSTQKALEEDLQIAT 323
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1218 AQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEgenaemqkevkllqaAKLESEQRRkkLEGQVQELQLRAGEG 1297
Cdd:pfam05483  324 KTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLE---------------ELLRTEQQR--LEKNEDQLKIITMEL 386
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1298 ERAKAELvERLVKLQNeldgvsgtlgsteSKTIKLaKDLATVeshLQDTQELLqEETRQKLNLSSRVRQLEEEKAAMLEQ 1377
Cdd:pfam05483  387 QKKSSEL-EEMTKFKN-------------NKEVEL-EELKKI---LAEDEKLL-DEKKQFEKIAEELKGKEQELIFLLQA 447
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1378 LEeeeaakanfsRQMQSLQQQVMETKKKLEEdagVAEAIEEARrraaKDLESLSVRYEERVQACDKLEKGRTRLQQELDD 1457
Cdd:pfam05483  448 RE----------KEIHDLEIQLTAIKTSEEH---YLKEVEDLK----TELEKEKLKNIELTAHCDKLLLENKELTQEASD 510
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1458 VTVALDQQRQVVSALEKKQKKfdqMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRA 1537
Cdd:pfam05483  511 MTLELKKHQEDIINCKKQEER---MLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEK 587
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1538 EMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKK 1617
Cdd:pfam05483  588 QMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKK 667
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1618 klLSKQvrELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDA-ANKGRDEAGKQLRKLQAQMKELWREVEEARAAREE 1696
Cdd:pfam05483  668 --ISEE--KLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVAlMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAA 743
                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1697 IfiqsresEKKLKNLEAELLQLQEDLAAS----ERAKRQAQQERDDLADE 1742
Cdd:pfam05483  744 L-------EIELSNIKAELLSLKKQLEIEkeekEKLKMEAKENTAILKDK 786
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
881-1621 1.53e-10

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 66.53  E-value: 1.53e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  881 QAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHELESRVEEE 960
Cdd:pfam02463  307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  961 EERCQQLQgdkKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSH 1040
Cdd:pfam02463  387 SSAAKLKE---EELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD 463
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1041 MAEEEEKVKSLSKLRNKYEAVM-ADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQ 1119
Cdd:pfam02463  464 ELELKKSEDLLKETQLVKLQEQlELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKV 543
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1120 AALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKRE 1199
Cdd:pfam02463  544 AISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAK 623
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1200 QEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRrfkiNLEKTKQALEGENAEMQKEVKLLQAAKLESEQR 1279
Cdd:pfam02463  624 VVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKA----SLSELTKELLEIQELQEKAESELAKEEILRRQL 699
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1280 RKKLEGQVQELQLR--AGEGERAKAELVERLVKLQNE----LDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEE 1353
Cdd:pfam02463  700 EIKKKEQREKEELKklKLEAEELLADRVQEAQDKINEelklLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEE 779
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1354 TRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVR 1433
Cdd:pfam02463  780 REKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL 859
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1434 YEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVS----ALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKET 1509
Cdd:pfam02463  860 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKeekkELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1510 KVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKL 1589
Cdd:pfam02463  940 LLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRL 1019
                          730       740       750
                   ....*....|....*....|....*....|..
gi 1033370542 1590 RLEVNMQALKAQHERELQNRDDANDDKKKLLS 1621
Cdd:pfam02463 1020 KEFLELFVSINKGWNKVFFYLELGGSAELRLE 1051
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1433-1964 2.06e-10

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 66.24  E-value: 2.06e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1433 RYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEadarEKETKVL 1512
Cdd:PRK03918   201 ELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE----ELKKEIE 276
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1513 SLSRALEEALETREEMERQNKqLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQE---MRAQMEELEDELQATEDGKL 1589
Cdd:PRK03918   277 ELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleeKEERLEELKKKLKELEKRLE 355
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1590 RLEVNMQALkaqhERELQNRDDANDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLEldlqEAMAQLDAANKGRDEA 1669
Cdd:PRK03918   356 ELEERHELY----EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKIT----ARIGELKKEIKELKKA 427
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1670 GKQLRKLQAQMKELWREVEEARaaREEIFiqsRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANgnsg 1749
Cdd:PRK03918   428 IEELKKAKGKCPVCGRELTEEH--RKELL---EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKL---- 498
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1750 kSALLDEKRHLEARIGQLEEELDEEQSN-MELLNDRYRKLSMQVETLTTELGAERSFsqktENARQQLERQNKDLRAKLG 1828
Cdd:PRK03918   499 -KELAEQLKELEEKLKKYNLEELEKKAEeYEKLKEKLIKLKGEIKSLKKELEKLEEL----KKKLAELEKKLDELEEELA 573
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1829 EMDSSVKSKYKMAIATLESKVAQLEEqLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQL 1908
Cdd:PRK03918   574 ELLKELEELGFESVEELEERLKELEP-FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1909 KRQLEEAEEEasRANASRRRMQRELEDVTESAESMNREVTSLRNRLSKVERRQRKR 1964
Cdd:PRK03918   653 EKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706
mukB PRK04863
chromosome partition protein MukB;
881-1744 2.59e-10

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 66.13  E-value: 2.59e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  881 QAKAVELQKVQEKHTKTQMDLKELEnkyqqlseektilaEQLQAETELFAEAEEMRARLAARKQELEdilhelesrveee 960
Cdd:PRK04863   337 LNLVQTALRQQEKIERYQADLEELE--------------ERLEEQNEVVEEADEQQEENEARAEAAE------------- 389
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  961 eercQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQ-LEKVSTEAKLKKMEEDLLvledqnsklhkerklmEERLSEFTs 1039
Cdd:PRK04863   390 ----EEVDELKSQLADYQQALDVQQTRAIQYQQAVQaLERAKQLCGLPDLTADNA----------------EDWLEEFQ- 448
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1040 hmAEEEEKVKSLSKLRNKyeavMADMEDRLKKEEKGRQelekLKRKLDGE--AGDLQEQVAELQQQLEELRqALARKEAE 1117
Cdd:PRK04863   449 --AKEQEATEELLSLEQK----LSVAQAAHSQFEQAYQ----LVRKIAGEvsRSEAWDVARELLRRLREQR-HLAEQLQQ 517
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1118 LQAALARVEDEAAQKNAVLKSLRELQaQLAELQEDMESEklarakAEKQRRDLGEELEALKTELEDtldstaaQQELRSK 1197
Cdd:PRK04863   518 LRMRLSELEQRLRQQQRAERLLAEFC-KRLGKNLDDEDE------LEQLQEELEARLESLSESVSE-------ARERRMA 583
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1198 REQEVTELKKTIEEEVKV----HEAQvldmrqrhtSALEELSEQLEQSrrfkinlEKTKQALEGENAEMQKEVKLLQAAK 1273
Cdd:PRK04863   584 LRQQLEQLQARIQRLAARapawLAAQ---------DALARLREQSGEE-------FEDSQDVTEYMQQLLERERELTVER 647
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1274 LESEQRRKKLEGQVQELQLRAG-EGERAKAeLVERL-----------VKLQ------------------NELDGVSGTLG 1323
Cdd:PRK04863   648 DELAARKQALDEEIERLSQPGGsEDPRLNA-LAERFggvllseiyddVSLEdapyfsalygparhaivvPDLSDAAEQLA 726
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1324 STESktikLAKDLATVESHLQ-------DTQELLQEETRQKLNLSSRVRQL-----------EEEKAAMLEQLEEEEAAK 1385
Cdd:PRK04863   727 GLED----CPEDLYLIEGDPDsfddsvfSVEELEKAVVVKIADRQWRYSRFpevplfgraarEKRIEQLRAEREELAERY 802
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1386 ANFSRQMQSLQQQVMETKKKLEEDAGVA------EAIEEARRRaakdleslsvryeeRVQACDKLEKGRTRLQQelddVT 1459
Cdd:PRK04863   803 ATLSFDVQKLQRLHQAFSRFIGSHLAVAfeadpeAELRQLNRR--------------RVELERALADHESQEQQ----QR 864
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1460 VALDQQRQVVSALEKKQKKFDqMLAEEKLIsARYAE---ERDRAEADAR---------EKETKVLSLSRALEEALET--- 1524
Cdd:PRK04863   865 SQLEQAKEGLSALNRLLPRLN-LLADETLA-DRVEEireQLDEAEEAKRfvqqhgnalAQLEPIVSVLQSDPEQFEQlkq 942
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1525 -----REEMERQNKQLRAeMDDLVS---------SKDDVGKNVHELERFKRALEQQVQEMRAQMEEL-EDELQATEDGKL 1589
Cdd:PRK04863   943 dyqqaQQTQRDAKQQAFA-LTEVVQrrahfsyedAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLrQAQAQLAQYNQV 1021
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1590 rlevnMQALKAQHERELQNRDDANDDKKKL-----------LSKQVRELEAELDAERKQRAQALAGRKKLELDLqeamaq 1658
Cdd:PRK04863  1022 -----LASLKSSYDAKRQMLQELKQELQDLgvpadsgaeerARARRDELHARLSANRSRRNQLEKQLTFCEAEM------ 1090
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1659 ldaankgrDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRES--EKKLKNLEAELLQLQEDLAASERAK---RQAQ 1733
Cdd:PRK04863  1091 --------DNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNgvERRLHRRELAYLSADELRSMSDKALgalRLAV 1162
                          970
                   ....*....|.
gi 1033370542 1734 QERDDLADELA 1744
Cdd:PRK04863  1163 ADNEHLRDVLR 1173
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
1225-1964 3.30e-10

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 65.76  E-value: 3.30e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1225 QRHTSALEELSEQLEQSRRfKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAEL 1304
Cdd:pfam02463  153 ERRLEIEEEAAGSRLKRKK-KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1305 VERLVKLQNELDGVSGTLGSTESKTIKLAKDlatVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAA 1384
Cdd:pfam02463  232 LKLNEERIDLLQELLRDEQEEIESSKQEIEK---EEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR 308
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1385 KANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEearrraaKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQ 1464
Cdd:pfam02463  309 KVDDEEKLKESEKEKKKAEKELKKEKEEIEELE-------KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKL 381
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1465 QRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEmerqNKQLRAEMDDLVS 1544
Cdd:pfam02463  382 ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQG----KLTEEKEELEKQE 457
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1545 SKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALK--------------AQHERELQNRD 1610
Cdd:pfam02463  458 LKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLlalikdgvggriisAHGRLGDLGVA 537
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1611 DANDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEA 1690
Cdd:pfam02463  538 VENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADE 617
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1691 RAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQLEEE 1770
Cdd:pfam02463  618 DDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR 697
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1771 LDEEQSNMELLNDRYRKLSMQVETLTTELgaersfsqKTENARQQLERQNKDLRAKLGEMDSSVKSKYKMAIATLESKVA 1850
Cdd:pfam02463  698 QLEIKKKEQREKEELKKLKLEAEELLADR--------VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSEL 769
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1851 QLEEQLEQESRERILSGKLVRRAEKKLKEvilQVDEERRNADQYKDQVEKGHlrlKQLKRQLEEAEEEASRANASRRRMQ 1930
Cdd:pfam02463  770 SLKEKELAEEREKTEKLKVEEEKEEKLKA---QEEELRALEEELKEEAELLE---EEQLLIEQEEKIKEEELEELALELK 843
                          730       740       750
                   ....*....|....*....|....*....|....
gi 1033370542 1931 RELEDVTESAESMNREVTSLRNRLSKVERRQRKR 1964
Cdd:pfam02463  844 EEQKLEKLAEEELERLEEEITKEELLQELLLKEE 877
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
1236-1982 3.65e-10

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 65.38  E-value: 3.65e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1236 EQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLqaaKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNEL 1315
Cdd:TIGR00618  173 FPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLL---TLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKR 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1316 dgvsgTLGSTESKTIKLAKDLATVESHLQdTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSL 1395
Cdd:TIGR00618  250 -----EAQEEQLKKQQLLKQLRARIEELR-AQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSR 323
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1396 QQQVMETKKKLEEDAgvaeAIEEARRRaakdLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKK 1475
Cdd:TIGR00618  324 AKLLMKRAAHVKQQS----SIEEQRRL----LQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKL 395
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1476 Q---KKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQnKQLRAEMDDLVSSKDDVGKN 1552
Cdd:TIGR00618  396 QslcKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCE-KLEKIHLQESAQSLKEREQQ 474
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1553 VHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQAlkAQHERELQNRDDANDDKKKLLSKQVRELEAELD 1632
Cdd:TIGR00618  475 LQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQD--IDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLT 552
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1633 AERKQRaqalagrKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEaraareeifiQSRESEKKLKNLE 1712
Cdd:TIGR00618  553 SERKQR-------ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK----------LSEAEDMLACEQH 615
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1713 AELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNME-LLNDRYRKLSMQ 1791
Cdd:TIGR00618  616 ALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALqKMQSEKEQLTYW 695
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1792 VETLTTELGAERSFSQKTENARQQLERQNKDLraklgemdSSVKSKYKMAIATLESKVAQLEEQLEQESRERILSGKLVR 1871
Cdd:TIGR00618  696 KEMLAQCQTLLRELETHIEEYDREFNEIENAS--------SSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNN 767
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1872 RAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLEEAEEEASRA-NASRRRMQRELEDVTESAESMNREVTSL 1950
Cdd:TIGR00618  768 EEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDIlNLQCETLVQEEEQFLSRLEEKSATLGEI 847
                          730       740       750
                   ....*....|....*....|....*....|...
gi 1033370542 1951 RNRLSKV-ERRQRKRTPLSFTTRTVRQVFRLDG 1982
Cdd:TIGR00618  848 THQLLKYeECSKQLAQLTQEQAKIIQLSDKLNG 880
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1195-1839 3.82e-10

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 65.04  E-value: 3.82e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1195 RSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALE---------ELSEQLEQSRRFKINLEKTK-QALEGENAEMQK 1264
Cdd:TIGR04523   31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEkinnsnnkiKILEQQIKDLNDKLKKNKDKiNKLNSDLSKINS 110
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1265 EVKLLQAAKLESEQRRKKLEGQVQELqlragegERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQ 1344
Cdd:TIGR04523  111 EIKNDKEQKNKLEVELNKLEKQKKEN-------KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1345 DTQELLQEETRQKLNLS---SRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARR 1421
Cdd:TIGR04523  184 NIQKNIDKIKNKLLKLElllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQN 263
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1422 RAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDvtvaLDQQRQ------VVSALEKKQKKFDQMLAE----EKLISa 1491
Cdd:TIGR04523  264 KIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISD----LNNQKEqdwnkeLKSELKNQEKKLEEIQNQisqnNKIIS- 338
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1492 RYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDvgknvhelerfkraLEQQVQEMR 1571
Cdd:TIGR04523  339 QLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIND--------------LESKIQNQE 404
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1572 AQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANdDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELD 1651
Cdd:TIGR04523  405 KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT-NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN 483
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1652 LQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAAS--ERAK 1729
Cdd:TIGR04523  484 LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEnlEKEI 563
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1730 RQAQQERDDLA---DELANGNSGKSALLD----EKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLttelgae 1802
Cdd:TIGR04523  564 DEKNKEIEELKqtqKSLKKKQEEKQELIDqkekEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI------- 636
                          650       660       670
                   ....*....|....*....|....*....|....*...
gi 1033370542 1803 RSFSQKTENARQQLERQNKDLRAKLGEMDSSVK-SKYK 1839
Cdd:TIGR04523  637 KSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKeSKTK 674
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
1093-1527 3.82e-10

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 64.52  E-value: 3.82e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1093 LQEQVAELQQQLEELRQALarkEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGE 1172
Cdd:pfam07888   32 LQNRLEECLQERAELLQAQ---EAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEELEEKYKELSR 108
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1173 ELEALKTELedtlDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTk 1252
Cdd:pfam07888  109 SGEELAEEK----DALLAQRAESEARIRELEEDIKTLTQRVLERETELERMKERVKKAGAQRKEEEAERKQLQAKLQQT- 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1253 qalEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVErlvkLQNELDGVSGTLGSTESKTIKL 1332
Cdd:pfam07888  184 ---EEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEA----LLEELRSLQERLNASERKVEGL 256
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1333 AKDLATVESHLQDTQELLQeetRQKLNLSSRVRQLEEEKAAMLEQleeeeaaKANFSRQMQSLQQQVMETKKKLEEDAGV 1412
Cdd:pfam07888  257 GEELSSMAAQRDRTQAELH---QARLQAAQLTLQLADASLALREG-------RARWAQERETLQQSAEADKDRIEKLSAE 326
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1413 AEAIEEARRraakdleslsvryEERVQAcdklEKGRTRLQQELDDVTVALDQQRQVV----SALEKKQKKFDQMLAE--E 1486
Cdd:pfam07888  327 LQRLEERLQ-------------EERMER----EKLEVELGREKDCNRVQLSESRRELqelkASLRVAQKEKEQLQAEkqE 389
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|.
gi 1033370542 1487 KLISARYAEERDRAEADAREKETKVLSLSRALEEALETREE 1527
Cdd:pfam07888  390 LLEYIRQLEQRLETVADAKWSEAALTSTERPDSPLSDSEDE 430
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
25-70 4.18e-10

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


Pssm-ID: 426949  Cd Length: 45  Bit Score: 56.67  E-value: 4.18e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1033370542   25 TAKRLVWVPSERHGFEAAGLREERGDEVMVELaENGRQVLVAKDDI 70
Cdd:pfam02736    1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVET-EDGKTVTVKKDDV 45
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1063-1303 7.91e-10

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 63.20  E-value: 7.91e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1063 ADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLREL 1142
Cdd:COG4942     34 AADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQ 113
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1143 QAQLAELQedmeseklarAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVhEAQVLD 1222
Cdd:COG4942    114 RRRLAEQL----------AALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAV-RAEIAA 182
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1223 MRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKA 1302
Cdd:COG4942    183 EQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAA 262

                   .
gi 1033370542 1303 E 1303
Cdd:COG4942    263 R 263
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
887-1316 1.22e-09

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 63.50  E-value: 1.22e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  887 LQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHELESRVEEEEERCQQ 966
Cdd:TIGR04523  206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  967 LQGDKKKMQQHVQDLEEQLEEEEAARQKLQLE-----KVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHM 1041
Cdd:TIGR04523  286 LEKQLNQLKSEISDLNNQKEQDWNKELKSELKnqekkLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQREL 365
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1042 AEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQaa 1121
Cdd:TIGR04523  366 EEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK-- 443
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1122 laRVEDEAAQKNAVLKSLR----ELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEAL---KTELEDTLDSTAAQQEL 1194
Cdd:TIGR04523  444 --DLTNQDSVKELIIKNLDntreSLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLneeKKELEEKVKDLTKKISS 521
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1195 RSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSalEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKL 1274
Cdd:TIGR04523  522 LKEKIEKLESEKKEKESKISDLEDELNKDDFELKK--ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKK 599
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|..
gi 1033370542 1275 ESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELD 1316
Cdd:TIGR04523  600 DLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
790-1155 4.52e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 62.00  E-value: 4.52e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  790 GQSKIFFRAGVLAHLEEERDLKITDIIVSFQAAARgylARKAFMKKQQQMSALKVMQRNCAAYLKLRHWQWWRLFTKVKP 869
Cdd:TIGR02168  668 TNSSILERRREIEELEEKIEELEEKIAELEKALAE---LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  870 LLQ-VTRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELED 948
Cdd:TIGR02168  745 LEErIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  949 ILHELESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERK 1028
Cdd:TIGR02168  825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1029 LMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEK-GRQELEKLKRKLDGEAGDLQEQVAELQQQLEEL 1107
Cdd:TIGR02168  905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*...
gi 1033370542 1108 RQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMES 1155
Cdd:TIGR02168  985 GPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
1413-1958 4.83e-09

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 61.66  E-value: 4.83e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1413 AEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISAR 1492
Cdd:pfam05483   87 AEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCAR 166
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1493 YAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDdlVSSKDDVGKNVHELERFKRAL---EQQVQE 1569
Cdd:pfam05483  167 SAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMH--FKLKEDHEKIQHLEEEYKKEIndkEKQVSL 244
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1570 MRAQMEELEDELQateDGKLRLEVNMQALKaqherELQNRDDANDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLE 1649
Cdd:pfam05483  245 LLIQITEKENKMK---DLTFLLEESRDKAN-----QLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALE 316
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1650 LDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRE----SEKKLKNLEAELLQLQEDLAAS 1725
Cdd:pfam05483  317 EDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQrlekNEDQLKIITMELQKKSSELEEM 396
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1726 ERAKRQAQQERDDLADELANgnsgKSALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTelgAERSF 1805
Cdd:pfam05483  397 TKFKNNKEVELEELKKILAE----DEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKT---SEEHY 469
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1806 SQKTENARQQLERQ-----------------NKDLRAKLGEMDSSVKSKYK-------------MAIATLESKVAQLEEQ 1855
Cdd:pfam05483  470 LKEVEDLKTELEKEklknieltahcdkllleNKELTQEASDMTLELKKHQEdiinckkqeermlKQIENLEEKEMNLRDE 549
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1856 LEQESRERIlsgklvrraeKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASRRRMQRELED 1935
Cdd:pfam05483  550 LESVREEFI----------QKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKA 619
                          570       580
                   ....*....|....*....|...
gi 1033370542 1936 VTESAESMNREVTSLRNRLSKVE 1958
Cdd:pfam05483  620 LKKKGSAENKQLNAYEIKVNKLE 642
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1025-1279 5.64e-09

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 60.51  E-value: 5.64e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1025 KERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQL 1104
Cdd:COG4942     38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1105 EELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMEseklaraKAEKQRRDLGEELEALKTELEDT 1184
Cdd:COG4942    118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALK-------ATLKQLAAVRAEIAAEQAELTTL 190
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1185 LDSTAAQQELRSKREQEVTELKKTIEEEVKVHEaQVLDMRQRHTSALEELSEQLEqsrrfkinLEKTKQALEGENAEMQK 1264
Cdd:COG4942    191 LSEQRAQQAKLAQLLEERKKTLAQLNSELSADQ-KKLEELRANESRLKNEIASAE--------AAAAKAREAAAAAEAAA 261
                          250
                   ....*....|....*
gi 1033370542 1265 EVKLLQAAKLESEQR 1279
Cdd:COG4942    262 ARARAAEAKRTGETY 276
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1101-1946 7.59e-09

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 61.22  E-value: 7.59e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1101 QQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKtE 1180
Cdd:TIGR00606  188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIM-K 266
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1181 LEDTLDSTAAQQElrsKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENA 1260
Cdd:TIGR00606  267 LDNEIKALKSRKK---QMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKT 343
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1261 EMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRA------------------------GEGERAK------AELVERLVK 1310
Cdd:TIGR00606  344 ELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeldgfergpfserqiknfhtlvieRQEDEAKtaaqlcADLQSKERL 423
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1311 LQNELDGV----SGTLGSTESKTIKLAK----------DLATVESHLQDTQELLQEETRQKLNLS------------SRV 1364
Cdd:TIGR00606  424 KQEQADEIrdekKGLGRTIELKKEILEKkqeelkfvikELQQLEGSSDRILELDQELRKAERELSkaeknsltetlkKEV 503
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1365 RQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDagvaEAIEEARRRAAKDLESLSVRYEERVQACDKL 1444
Cdd:TIGR00606  504 KSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKD----EQIRKIKSRHSDELTSLLGYFPNKKQLEDWL 579
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1445 EKGRTRLQQ---ELDDVTVALDQQRQVVSALEKKQKKFDQMLA--EEKLISARYAE------ERDRAEADAREKETKVLS 1513
Cdd:TIGR00606  580 HSKSKEINQtrdRLAKLNKELASLEQNKNHINNELESKEEQLSsyEDKLFDVCGSQdeesdlERLKEEIEKSSKQRAMLA 659
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1514 LSRALEEALETreemerqnkQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATED------G 1587
Cdd:TIGR00606  660 GATAVYSQFIT---------QLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKrrdemlG 730
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1588 KLRLEVNMQALKAQHERELQNRD-DANDDKKKL---LSKQVRELEA----ELDAERKQRAQALAGRKKLEL-DLQEAMAQ 1658
Cdd:TIGR00606  731 LAPGRQSIIDLKEKEIPELRNKLqKVNRDIQRLkndIEEQETLLGTimpeEESAKVCLTDVTIMERFQMELkDVERKIAQ 810
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1659 LDAANKGRD------EAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAaserakrQA 1732
Cdd:TIGR00606  811 QAAKLQGSDldrtvqQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-------RR 883
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1733 QQERDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTENA 1812
Cdd:TIGR00606  884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK 963
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1813 RQQ-LERQNKDLRAKLGEMDSSVKSKYKMAIATLESKVAQLEEQLEQESRERILSGKLVRRaekKLKEVILQVDEERRNA 1891
Cdd:TIGR00606  964 IQDgKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR---KRENELKEVEEELKQH 1040
                          890       900       910       920       930
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542 1892 DQYKDQVEKghLRLKQLKRQLEEAEEEASRANASRRRMQRELEDVTESAESMNRE 1946
Cdd:TIGR00606 1041 LKEMGQMQV--LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
1039-1424 9.88e-09

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteristic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 59.70  E-value: 9.88e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1039 SHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAEL 1118
Cdd:pfam19220   13 GEMADRLEDLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARL 92
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1119 QAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKR 1198
Cdd:pfam19220   93 AKLEAALREAEAAKEELRIELRDKTAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALL 172
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1199 EQEVTELKKTIEEEVkvheAQVLdmrqRHTSALEELSEQLEQSRRfkiNLEKTKQALEGENAEMQKEVKLLQAAKLESEQ 1278
Cdd:pfam19220  173 EQENRRLQALSEEQA----AELA----ELTRRLAELETQLDATRA---RLRALEGQLAAEQAERERAEAQLEEAVEAHRA 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1279 RRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKL 1358
Cdd:pfam19220  242 ERASLRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARA 321
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1359 NLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEedAGVAEAIEEARRRAA 1424
Cdd:pfam19220  322 ELEERAEMLTKALAAKDAALERAEERIASLSDRIAELTKRFEVERAALE--QANRRLKEELQRERA 385
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
903-1487 1.28e-08

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 60.12  E-value: 1.28e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  903 ELENKYQQLS---EEKTILAEQLQAETELFAE-AEEMRARLAARKQELEDILHELESRVEEEEERCQQLQGDKKKMQQHV 978
Cdd:pfam05483  251 EKENKMKDLTfllEESRDKANQLEEKTKLQDEnLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLT 330
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  979 QDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEdllVLEDQNSKLHKErklmEERLSEFTSHMAEEEEKVKSLSKLRNKY 1058
Cdd:pfam05483  331 EEKEAQMEELNKAKAAHSFVVTEFEATTCSLEE---LLRTEQQRLEKN----EDQLKIITMELQKKSSELEEMTKFKNNK 403
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1059 EAvmadmedrlkkeekgrqELEKLKRKLDGEAGDLQEqvaelQQQLEELRQALARKEAE----LQAALARVEDEAAQKNA 1134
Cdd:pfam05483  404 EV-----------------ELEELKKILAEDEKLLDE-----KKQFEKIAEELKGKEQEliflLQAREKEIHDLEIQLTA 461
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1135 VLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELED-TLDSTAAQQELRSKREQEVTELKKTieEEV 1213
Cdd:pfam05483  462 IKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDmTLELKKHQEDIINCKKQEERMLKQI--ENL 539
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1214 KVHEAQVLDmrqrhtsALEELSEQLEQSR-RFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQl 1292
Cdd:pfam05483  540 EEKEMNLRD-------ELESVREEFIQKGdEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIE- 611
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1293 ragegerakaELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKlNLSSRVRQLEEEKA 1372
Cdd:pfam05483  612 ----------ELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDK-KISEEKLLEEVEKA 680
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1373 AMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYeervqacdKLEKGRTRLQ 1452
Cdd:pfam05483  681 KAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKA--------ALEIELSNIK 752
                          570       580       590
                   ....*....|....*....|....*....|....*
gi 1033370542 1453 QELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEK 1487
Cdd:pfam05483  753 AELLSLKKQLEIEKEEKEKLKMEAKENTAILKDKK 787
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
1389-1958 1.65e-08

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 59.79  E-value: 1.65e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1389 SRQMQSLQQQVMETKKkleedagvaeaIEEARRRAAKDLESLSVRYEErvqacdkLEKGRTRLQQELDDVTVALDQQRQV 1468
Cdd:pfam01576    1 TRQEEEMQAKEEELQK-----------VKEKQQKAESELKELEKKHQQ-------LCEEKNILAEQLQAETELFAEAEEM 62
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1469 VSALEKKQKKFDQMLAEeklISARYAEERDRAEADAREK---ETKVLSLSRALEEALETREEMERQNKQLRAEM----DD 1541
Cdd:pfam01576   63 RARLAARKQELEEILHE---LEARLEEEEERSQQLQNEKkkmQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIkkmeED 139
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1542 LVSSKDDVGKnvheLERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKL-- 1619
Cdd:pfam01576  140 ILLLEDQNNK----LQKERKLLEERISEFTSNLAEEEEKSKSLNKLKNKHEAMISDLEDRLKKEEKGRQELEKAKRKLeg 215
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1620 ----LSKQVRELEAELDAERKQRAqalagrkKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAARE 1695
Cdd:pfam01576  216 essdLQEQIAELQAQIAELRAQLA-------KKEEELQAALARLEEETAQKNAALKKLRELEAQLSELQEDLESERAARA 288
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1696 EIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLadelangnsgKSALLDEKRHLEARigqleeeldeeq 1775
Cdd:pfam01576  289 KAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTEL----------KKALEEETRSHEAQ------------ 346
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1776 snmelLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLgemdssvkskykmaiatleskvaqleeq 1855
Cdd:pfam01576  347 -----LQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAEL---------------------------- 393
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1856 leqesrerilsgklvrraeKKLKEVILQVDEERRNADQykdQVEKGHLRLKQLKRQLEEAEEEASranasrrRMQRELED 1935
Cdd:pfam01576  394 -------------------RSLQQAKQDSEHKRKKLEG---QLQELQSRLSESERQRAELAEKLS-------KLQSELES 444
                          570       580
                   ....*....|....*....|...
gi 1033370542 1936 VTESAESMNREVTSLRNRLSKVE 1958
Cdd:pfam01576  445 VSSLLNEAEGKNIKLSKDVSSLE 467
mukB PRK04863
chromosome partition protein MukB;
1209-1614 2.26e-08

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 59.59  E-value: 2.26e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1209 IEEEVKVHEAQVLDMRQrhtsALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEvklLQAAK------LESEQRRKK 1282
Cdd:PRK04863   277 HANERRVHLEEALELRR----ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD---YQAASdhlnlvQTALRQQEK 349
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1283 LE---GQVQELQLRAGEGERAKAELVERLVKLQNELDgvsgtlgSTESKTIKLAKDLATVESHLqDTQELLQEETRQKLN 1359
Cdd:PRK04863   350 IEryqADLEELEERLEEQNEVVEEADEQQEENEARAE-------AAEEEVDELKSQLADYQQAL-DVQQTRAIQYQQAVQ 421
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1360 LSSRVRQLeeeKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLeedaGVAEAIEEARRRAAKDLESL------SVR 1433
Cdd:PRK04863   422 ALERAKQL---CGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKL----SVAQAAHSQFEQAYQLVRKIagevsrSEA 494
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1434 YEERVQACDKLEKGRTR------LQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEklisaryaeerDRAEADAREK 1507
Cdd:PRK04863   495 WDVARELLRRLREQRHLaeqlqqLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDE-----------DELEQLQEEL 563
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1508 ETKVLSLSRALEEALETREEMERQNKQLRAEMDDLvSSKDDVGKNVHE-LER----FKRALE--QQVQEMRAQMEELEDE 1580
Cdd:PRK04863   564 EARLESLSESVSEARERRMALRQQLEQLQARIQRL-AARAPAWLAAQDaLARlreqSGEEFEdsQDVTEYMQQLLERERE 642
                          410       420       430
                   ....*....|....*....|....*....|....
gi 1033370542 1581 LQATEDgklRLEVNMQALKAQHEReLQNRDDAND 1614
Cdd:PRK04863   643 LTVERD---ELAARKQALDEEIER-LSQPGGSED 672
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1137-1529 2.55e-08

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 58.98  E-value: 2.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1137 KSLRELQAQlaELQEDMESEKLARAKAEK-----QRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEvteLKKTIEE 1211
Cdd:pfam17380  282 KAVSERQQQ--EKFEKMEQERLRQEKEEKareveRRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERE---LERIRQE 356
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1212 EVKVHEAQVldmRQrhtsalEELSEQLEQSRRfkinLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELq 1291
Cdd:pfam17380  357 ERKRELERI---RQ------EEIAMEISRMRE----LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM- 422
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1292 lragegERAKAElverlvklqneldgvsgtlgstesktiklakdlatveshlqdtqellQEETRQKlnlssRVRQLEEEK 1371
Cdd:pfam17380  423 ------EQIRAE-----------------------------------------------QEEARQR-----EVRRLEEER 444
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1372 AAMLEQLEEEEAAKanfSRQMQSLQQQVMETKKK---LEEDAGVAEAIEEARRRAakdlesLSVRYEERVQACDKLEKGR 1448
Cdd:pfam17380  445 AREMERVRLEEQER---QQQVERLRQQEEERKRKkleLEKEKRDRKRAEEQRRKI------LEKELEERKQAMIEEERKR 515
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1449 TRLQQELDDVTVALDQQRQVVSALEKKQKKfdQMLAEEKLISARY---AEERDRAEADAREKEtkvlsLSRALEEALETR 1525
Cdd:pfam17380  516 KLLEKEMEERQKAIYEEERRREAEEERRKQ--QEMEERRRIQEQMrkaTEERSRLEAMERERE-----MMRQIVESEKAR 588

                   ....
gi 1033370542 1526 EEME 1529
Cdd:pfam17380  589 AEYE 592
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
1076-1735 2.81e-08

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 59.13  E-value: 2.81e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1076 RQELEKLKRKLDGEagdlQEQVAELQQQLEELRQALARKEAELQAALARVedeaaqkNAVLKSLRE------LQAQLAEL 1149
Cdd:COG3096    292 RRELYTSRQQLAAE----QYRHVDMSRELAELNGAEGDLEADYQAASDHL-------NLVQTALRQqekierYQADLEEL 360
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1150 QEDMESEKLARAKAEKQRRD-------LGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIE---------EEV 1213
Cdd:COG3096    361 TIRLEEQNEVVEEANERQEEnearaeaAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKElchlpdltaDSA 440
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1214 KVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQ-VQELQL 1292
Cdd:COG3096    441 EEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQRHLAEqVQPLRM 520
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1293 RAGEGER--AKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEE 1370
Cdd:COG3096    521 RLSELEQrlRQQQSAERLLADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQR 600
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1371 -------KAAMLEQLEEEEAAKANFSRQMQSLQQQ-VMETKKKLEEDAgvaeaIEEARRRAAKDLESLSVRYEERVQACD 1442
Cdd:COG3096    601 apvwlaaQNALEQLSEQSGEEFTDSQDVTEYMQQLlEREREATVERDE-----LGARKNALDEEIERLSQPGGSEDQRLN 675
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1443 KLEK--GRTRLQQELDDVTV-------AL---DQQRQVVSALEKKQKKFDQMlaeEKLISARYAEERDRAEAD-----AR 1505
Cdd:COG3096    676 ALAErfGGVLLSEIYDDVTIedapyfsALygpSRHAIVVPDLSQVKEHLEGL---TDCPEDLYLIEGDPQSFDdsvfsVD 752
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1506 EKETKV--------LSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRAL-------------- 1563
Cdd:COG3096    753 ELEKAVvvkiadrqWRYSRFPEIPLFGRAAREQRLESLHAERDVLSERHATLSFDVQKTQRLHQAFsrfigshlavafea 832
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1564 --EQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKA--QHERELQNRDDANDDKKklLSKQVRELEAELD-AERKQR 1638
Cdd:COG3096    833 dpEAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEgvTALNRLIPQLNLLADES--LADRVEEIRERLDeAQEAAR 910
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1639 AQALAGRKKLELD-----LQEAMAQLDAANKGRDEAGKQLRKLQAQMKELwREVEEARA--AREEIFIQSRESEKKLKNL 1711
Cdd:COG3096    911 FIQQHGNTLSKLEpiasvLQSDPEQFEQLKEDYAQAQQMQRQARQQAFAL-TEVVQRRAhfSYSDSAEMLSENSDLNEKL 989
                          730       740
                   ....*....|....*....|....
gi 1033370542 1712 EAELLQLQEDLAASERAKRQAQQE 1735
Cdd:COG3096    990 RQRLEQAEAERTRAREQLRQHQAQ 1013
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1137-1368 3.70e-08

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 58.11  E-value: 3.70e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1137 KSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDT-LDSTAAQQELRSKREqevtELKKTIEEEVKV 1215
Cdd:COG4372     67 RNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKArQEREAVRQELAAARQ----NLAKAQQELARL 142
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1216 hEAQVLDMRQRhtsaLEELSEQLEQsrrfkinLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAg 1295
Cdd:COG4372    143 -TKQAQDLQTR----LKTLAEQRRQ-------LEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRA- 209
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1033370542 1296 egeRAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLE 1368
Cdd:COG4372    210 ---NAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLE 279
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1503-1964 3.81e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 58.54  E-value: 3.81e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1503 DAREKETK-VLSLSRaLEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDEL 1581
Cdd:PRK03918   145 ESREKVVRqILGLDD-YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1582 QATEDGKLRLEVNMQALKAQHERELQNRDDAN--DDKKKLLSKQVRELEAELDaERKQRAQALAGRKKLELDLQEAMAQL 1659
Cdd:PRK03918   224 EKLEKEVKELEELKEEIEELEKELESLEGSKRklEEKIRELEERIEELKKEIE-ELEEKVKELKELKEKAEEYIKLSEFY 302
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1660 DAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIfiqsRESEKKLKNLEAELLQLQEDLAASERAK---------- 1729
Cdd:PRK03918   303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL----EELKKKLKELEKRLEELEERHELYEEAKakkeelerlk 378
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1730 -RQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELGAE--RSFS 1806
Cdd:PRK03918   379 kRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEllEEYT 458
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1807 QKTENAR---QQLERQNKDLRAKLGEMDSSVKSK------YKMA--IATLESKVAQLE-EQLEQESRERilsgKLVRRAE 1874
Cdd:PRK03918   459 AELKRIEkelKEIEEKERKLRKELRELEKVLKKEseliklKELAeqLKELEEKLKKYNlEELEKKAEEY----EKLKEKL 534
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1875 KKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASRrrmQRELEDVTESAESMNREVTSLRNRL 1954
Cdd:PRK03918   535 IKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPFYNEYLELKDAE 611
                          490
                   ....*....|
gi 1033370542 1955 SKVERRQRKR 1964
Cdd:PRK03918   612 KELEREEKEL 621
mukB PRK04863
chromosome partition protein MukB;
1277-1722 4.32e-08

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 58.82  E-value: 4.32e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1277 EQRRKKLEgqvQELQLRAG--EGERAKAELVERLVKLQNELDGVSGTLGSTESktiklakDLATVESHLQDTQELL---Q 1351
Cdd:PRK04863   279 NERRVHLE---EALELRRElyTSRRQLAAEQYRLVEMARELAELNEAESDLEQ-------DYQAASDHLNLVQTALrqqE 348
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1352 EETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKAnfsrQMQSLQQQVMETKKKLeedAGVAEAIEEARRRAakdlesls 1431
Cdd:PRK04863   349 KIERYQADLEELEERLEEQNEVVEEADEQQEENEA----RAEAAEEEVDELKSQL---ADYQQALDVQQTRA-------- 413
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1432 VRYEERVQAcdkLEKGRTRLQqeLDDVTvaLDQQRQVVSALEKKQKKFDQML--AEEKLISAryaeerdraeADAREKET 1509
Cdd:PRK04863   414 IQYQQAVQA---LERAKQLCG--LPDLT--ADNAEDWLEEFQAKEQEATEELlsLEQKLSVA----------QAAHSQFE 476
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1510 KVLSLSRAL------EEALETREEMERQNKQLRAEMDdlvsskddvgkNVHELERFKRALEQQVQEMRAQmEELEDELQA 1583
Cdd:PRK04863   477 QAYQLVRKIagevsrSEAWDVARELLRRLREQRHLAE-----------QLQQLRMRLSELEQRLRQQQRA-ERLLAEFCK 544
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1584 TEDGKLRLEVNMQALKAQHERELQNrddanddkkklLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAAN 1663
Cdd:PRK04863   545 RLGKNLDDEDELEQLQEELEARLES-----------LSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALA 613
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542 1664 KGRDEAGKQL---RKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNL-------EAELLQLQEDL 1722
Cdd:PRK04863   614 RLREQSGEEFedsQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLsqpggseDPRLNALAERF 682
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
866-1586 6.67e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 57.80  E-value: 6.67e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  866 KVKPLLQV--TRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEE-KTILAEQLQAETELFAEAEEMRARLAAR 942
Cdd:pfam15921  257 KIELLLQQhqDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQaRNQNSMYMRQLSDLESTVSQLRSELREA 336
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  943 KQELEDILHELESRVEEEEERCQQLQGDKKKMQQhvqdleeqleeeeaarqklqlEKVSTEAKLKKMEEDllvledqnsk 1022
Cdd:pfam15921  337 KRMYEDKIEELEKQLVLANSELTEARTERDQFSQ---------------------ESGNLDDQLQKLLAD---------- 385
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1023 LHKerklmeerlseftshmaeeEEKVKSLSKLRNKyeavmadmedRLKKEEKGRQ-ELEKLKRKLDGEAGDLQEQVAELQ 1101
Cdd:pfam15921  386 LHK-------------------REKELSLEKEQNK----------RLWDRDTGNSiTIDHLRRELDDRNMEVQRLEALLK 436
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1102 QQLEELRQALARKEAELQAALARVEdEAAQKNAVLKSLRELqaqLAELQEDMESEKLARAKAEKQRRDLGEELEalktEL 1181
Cdd:pfam15921  437 AMKSECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEM---LRKVVEELTAKKMTLESSERTVSDLTASLQ----EK 508
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1182 EDTLDSTAAQ-QELRSKREQEVTELKKTIEEEVKVHEAQV------LDMRQRhTSALEELSEQLEQSRRFKINLEKTKQA 1254
Cdd:pfam15921  509 ERAIEATNAEiTKLRSRVDLKLQELQHLKNEGDHLRNVQTecealkLQMAEK-DKVIEILRQQIENMTQLVGQHGRTAGA 587
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1255 LEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELV----ERL--VK-LQNELDGVSGTLGSTES 1327
Cdd:pfam15921  588 MQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVnagsERLraVKdIKQERDQLLNEVKTSRN 667
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1328 KTIKLAKDLATVESHLQDTQELLQEETRQ-KLNLSSRVRQLEEEKAAMleqlEEEEAAKANFSRQMQSLQQQVMETKKKL 1406
Cdd:pfam15921  668 ELNSLSEDYEVLKRNFRNKSEEMETTTNKlKMQLKSAQSELEQTRNTL----KSMEGSDGHAMKVAMGMQKQITAKRGQI 743
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1407 EEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEE 1486
Cdd:pfam15921  744 DALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAEC 823
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1487 KLISARYAEERDRAE----ADAREKE----TKVLSLS-RALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKnvhelE 1557
Cdd:pfam15921  824 QDIIQRQEQESVRLKlqhtLDVKELQgpgyTSNSSVKpRLLQPASFTRPHSNVPSSQSTASFLSHHSIKCEMLK-----E 898
                          730       740       750
                   ....*....|....*....|....*....|
gi 1033370542 1558 RFKRALEQQVQEMRAQM-EELEDELQATED 1586
Cdd:pfam15921  899 DPTRDLKQLLQELRSVInEEPNVKLSKAEL 928
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
1513-1662 8.30e-08

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 225288 [Multi-domain]  Cd Length: 652  Bit Score: 57.41  E-value: 8.30e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1513 SLSRALEEALETREEMERQNKQLRAEMDDLVSSKD--DVGKNVHELERFKRALEQQVQEMRAQMEELEDELQatedgKLR 1590
Cdd:COG2433    389 PLAEALSKVKEEERPREKEGTEEEERREITVYEKRikKLEETVERLEEENSELKRELEELKREIEKLESELE-----RFR 463
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542 1591 LEVNMQALKaqhERELQNRDDANDDKKKLL---SKQVRELEAELDAERKQRAQALAGR----KKLELDLQEAMAQLDAA 1662
Cdd:COG2433    464 REVRDKVRK---DREIRARDRRIERLEKELeekKKRVEELERKLAELRKMRKLELSGKgtpvKVVEKLTLEAIEEAEEE 539
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
1212-1967 8.40e-08

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 57.59  E-value: 8.40e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1212 EVKVHEAQVLDMRQRHTSALEELSeqLEQSRRFKINLEKTKQA-----LEGENAEMQKEVKLLQAAkLESEQRRKKLEGQ 1286
Cdd:COG3096    280 ERRVHLDQALEFRRELYTSRQQLA--AEQYRHVDMSRELAELNgaegdLEADYQAASDHLNLVQTA-LRQQEKIERYQAD 356
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1287 VQELQLRAGEGERAKAELVERLVKlqneldgvsgtlgsTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQ 1366
Cdd:COG3096    357 LEELTIRLEEQNEVVEEANERQEE--------------NEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAA 422
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1367 LEEEKAAMLEQLEEEEAAKA---NFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSvRYEERVQACDK 1443
Cdd:COG3096    423 LERAKELCHLPDLTADSAEEwleTFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELA-RSEAWDVAREL 501
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1444 LEKGRTR---------LQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLisaryaeerdraEADAREKETKVLSL 1514
Cdd:COG3096    502 LREGPDQrhlaeqvqpLRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDAEEL------------EALHQELEALIESL 569
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1515 SRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKR------ALEQQVQEMRAQMEELEDELQATEDgk 1588
Cdd:COG3096    570 SDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEqsgeefTDSQDVTEYMQQLLEREREATVERD-- 647
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1589 lRLEVNMQALKAQHEReLQNRDDANDDKKKLLSKQ-----VRELEAELDAERKQRAQALAGRKKLEL---DLQEAMAQLd 1660
Cdd:COG3096    648 -ELGARKNALDEEIER-LSQPGGSEDQRLNALAERfggvlLSEIYDDVTIEDAPYFSALYGPSRHAIvvpDLSQVKEHL- 724
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1661 aanKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQedlAASERAKRQAQQERDDLA 1740
Cdd:COG3096    725 ---EGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEIPLFGR---AAREQRLESLHAERDVLS 798
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1741 DELANGNSGKSALLDEKRHLEARIGQLEEELDEE--QSNMELLNDRYRKLsmqvetlttelgaERSFSQkTENARQQLER 1818
Cdd:COG3096    799 ERHATLSFDVQKTQRLHQAFSRFIGSHLAVAFEAdpEAEIRQLNSRRNEL-------------ERALSN-HENDNQQQRI 864
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1819 QNKDLRAKLGEMDSSVKSKYKMAIATLESKVAQLEEQLEQ-ESRERILSGKLVRRAEKKLKEVILQVDEErrNADQYKDQ 1897
Cdd:COG3096    865 QFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEaQEAARFIQQHGNTLSKLEPIASVLQSDPE--QFEQLKED 942
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542 1898 VEKGHLRLKQLKRQLeeaeeeASRANASRRRMQRELEDVTESAESMNREVTSLRNRLSKVE-RRQRKRTPL 1967
Cdd:COG3096    943 YAQAQQMQRQARQQA------FALTEVVQRRAHFSYSDSAEMLSENSDLNEKLRQRLEQAEaERTRAREQL 1007
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
891-1665 8.91e-08

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 57.59  E-value: 8.91e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  891 QEKHTKTQMDLKELENKyqqLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHELESRVEEEEERCQQLQG- 969
Cdd:COG3096    347 QEKIERYQADLEELTIR---LEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAAl 423
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  970 DKKKMQQHVQDLEEQLEEEEAArqKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKV- 1048
Cdd:COG3096    424 ERAKELCHLPDLTADSAEEWLE--TFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDVAREl 501
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1049 -------KSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRK--LDGEAGDLQEQVAELQQQLEEL----------RQ 1109
Cdd:COG3096    502 lregpdqRHLAEQVQPLRMRLSELEQRLRQQQSAERLLADFCKRqgKNLDAEELEALHQELEALIESLsdsvsnareqRM 581
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1110 ALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAE-----------LQEDMESEK---LARAKAEKQRRDLGEELE 1175
Cdd:COG3096    582 ALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEeftdsqdvteyMQQLLEREReatVERDELGARKNALDEEIE 661
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1176 ALKTEledtldSTAAQQELRSKREQEVTELKKTIEEEVKVHEA---QVLDMRQRHTSALEELS---EQLEQsrrfkinLE 1249
Cdd:COG3096    662 RLSQP------GGSEDQRLNALAERFGGVLLSEIYDDVTIEDApyfSALYGPSRHAIVVPDLSqvkEHLEG-------LT 728
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1250 KTKQAL---EGENAEMQKEVkllqaakLESEQRRKKLEGQVQELQLRAGE-------GERAKAELVERLVKLQNELDGVS 1319
Cdd:COG3096    729 DCPEDLyliEGDPQSFDDSV-------FSVDELEKAVVVKIADRQWRYSRfpeiplfGRAAREQRLESLHAERDVLSERH 801
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1320 GTLGSTESKTIKLAKDLAT-VESHLQDTQELLQEETRQKLNlsSRVRQLEEEkaamleqleeeeaaKANFSRQMQSLQQQ 1398
Cdd:COG3096    802 ATLSFDVQKTQRLHQAFSRfIGSHLAVAFEADPEAEIRQLN--SRRNELERA--------------LSNHENDNQQQRIQ 865
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1399 VMETKKkleedaGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQElddvTVALDQQRQVVSALEKKQKK 1478
Cdd:COG3096    866 FDQAKE------GVTALNRLIPQLNLLADESLADRVEEIRERLDEAQEAARFIQQH----GNTLSKLEPIASVLQSDPEQ 935
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1479 FDQMLAEEKLISARYAEERDRAEADAREKETKVlslSRALEEALETREEMERQNKQLRAEMDDLVS----SKDDVGKNVH 1554
Cdd:COG3096    936 FEQLKEDYAQAQQMQRQARQQAFALTEVVQRRA---HFSYSDSAEMLSENSDLNEKLRQRLEQAEAertrAREQLRQHQA 1012
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1555 ELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKLLSKQVRELEAELDAE 1634
Cdd:COG3096   1013 QLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNL 1092
                          810       820       830
                   ....*....|....*....|....*....|.
gi 1033370542 1635 RKQraqalagRKKLELDLQEAMAQLDAANKG 1665
Cdd:COG3096   1093 TRK-------LRKLERDYFEMREQVVTAKAG 1116
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1025-1319 1.02e-07

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 57.06  E-value: 1.02e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1025 KERKLMEERLSEftshmaEEEEKVKSLSKLRNKYEAVMAdMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQvaELQQQL 1104
Cdd:pfam17380  292 KFEKMEQERLRQ------EKEEKAREVERRRKLEEAEKA-RQAEMDRQAAIYAEQERMAMERERELERIRQE--ERKREL 362
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1105 EELRQALARKEAELQAALARVEDEAAQKNAVLKslRELQAqlAELQEDMESEKLARAKAEKQrrdlgeELEALKTELEDt 1184
Cdd:pfam17380  363 ERIRQEEIAMEISRMRELERLQMERQQKNERVR--QELEA--ARKVKILEEERQRKIQQQKV------EMEQIRAEQEE- 431
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1185 ldstAAQQELRSKREQEVTELKKTIEEEVKvheaqvldmRQRHtsaLEELSEQLEQSRRFKINLEKTKQ----ALEGENA 1260
Cdd:pfam17380  432 ----ARQREVRRLEEERAREMERVRLEEQE---------RQQQ---VERLRQQEEERKRKKLELEKEKRdrkrAEEQRRK 495
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542 1261 EMQKEVKLLQAAKLESEQRRKKLEGQVQELQ--------LRAGEGERAKAELVERLVKLQNELDGVS 1319
Cdd:pfam17380  496 ILEKELEERKQAMIEEERKRKLLEKEMEERQkaiyeeerRREAEEERRKQQEMEERRRIQEQMRKAT 562
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
885-1649 1.26e-07

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 57.16  E-value: 1.26e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  885 VELQKVQEKHTKTQMDLKELENKYQQLSE-EKTILAEQLQAETELfaeaEEMRARLAARKQELedilhelESRVEEEEER 963
Cdd:pfam12128  234 AGIMKIRPEFTKLQQEFNTLESAELRLSHlHFGYKSDETLIASRQ----EERQETSAELNQLL-------RTLDDQWKEK 302
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  964 CQQLQGDKKkmqqhvqdleeqleeeeAARQKLQlekvSTEAKLKKMEEDLLVLEDQNSklhKERKLMEERLSEFTSHMAE 1043
Cdd:pfam12128  303 RDELNGELS-----------------AADAAVA----KDRSELEALEDQHGAFLDADI---ETAAADQEQLPSWQSELEN 358
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1044 EEEKVKSLSKLRNKYEAvmADMEDRLKKEEKGRQELEKLKRKLDG--EAGDLQEQVAE--LQQQLEELRQalarkeaELQ 1119
Cdd:pfam12128  359 LEERLKALTGKHQDVTA--KYNRRRSKIKEQNNRDIAGIKDKLAKirEARDRQLAVAEddLQALESELRE-------QLE 429
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1120 AALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRrdlgEELEALKTELEDTLDSTAAqqeLRSKRE 1199
Cdd:pfam12128  430 AGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAR----EEQEAANAEVERLQSELRQ---ARKRRD 502
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1200 QEVTELKktiEEEVKVHEAQvldmrqrhtSALEELSEQLEQSRRFKINLEKTKQALEGENAEmqkevKLLQAAKLeseqR 1279
Cdd:pfam12128  503 QASEALR---QASRRLEERQ---------SALDELELQLFPQAGTLLHFLRKEAPDWEQSIG-----KVISPELL----H 561
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1280 RKKLEGQVQElqlragegERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKdlatVESHLQDTQELLQEETRQkln 1359
Cdd:pfam12128  562 RTDLDPEVWD--------GSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDK----AEEALQSAREKQAAAEEQ--- 626
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1360 LSSRVRQLEEEKAAMLEQLEEEEAAKANFSR---QMQSLQQQVMETKKKLEEDAgvaeaiEEARRRAAKDLESLSVRYEE 1436
Cdd:pfam12128  627 LVQANGELEKASREETFARTALKNARLDLRRlfdEKQSEKDKKNKALAERKDSA------NERLNSLEAQLKQLDKKHQA 700
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1437 RVQAC-DKLEKGRTRLQQELDDVTVALD-QQRQVVSALEKKQKKFDqmlAEEKLISARYAEERDRAEAD-------AREK 1507
Cdd:pfam12128  701 WLEEQkEQKREARTEKQAYWQVVEGALDaQLALLKAAIAARRSGAK---AELKALETWYKRDLASLGVDpdviaklKREI 777
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1508 ETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKnvhELERFKRALEQQVQEMRAQMEELEDELQATEDG 1587
Cdd:pfam12128  778 RTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIER---AISELQQQLARLIADTKLRRAKLEMERKASEKQ 854
                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1033370542 1588 KLRLEVNMQALKAQHERELQNRDDANDDKKKL-LSKQVRELEaelDAERKQRAQALAGRKKLE 1649
Cdd:pfam12128  855 QVRLSENLRGLRCEMSKLATLKEDANSEQAQGsIGERLAQLE---DLKLKRDYLSESVKKYVE 914
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1656-1995 1.29e-07

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 56.57  E-value: 1.29e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1656 MAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQE 1735
Cdd:COG4372     59 LAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQE 138
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1736 RDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSM---QVETLTTELGAERSFSQKTENA 1812
Cdd:COG4372    139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLrsaQIEQEAQNLATRANAAQARTEE 218
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1813 RQQLERQNKDLRAKLGEMDSSVKSKyKMAIATLESKVAQLEEQLEQESRERILSGKLVRRAEK--------KLKEVILQV 1884
Cdd:COG4372    219 LARRAAAAQQTAQAIQQRDAQISQK-AQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAyyqayvrlRQQAAATQR 297
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1885 DEERRNADQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASRRRMQREL-EDVTESAESMNREVTSLRNRLSKV-----E 1958
Cdd:COG4372    298 GQVLAGAAQRVAQAQAQAQAQAQLLSSANRPAALRLRRSPRRGRRQRPVtRHTTRRRRPATRQSPSGREYVTRVtsagnY 377
                          330       340       350
                   ....*....|....*....|....*....|....*..
gi 1033370542 1959 RRQRKRTPLSFTTRTVRQVFRLDGVSDEETEDPESDS 1995
Cdd:COG4372    378 VTGERLIPRFCDRATNRCVFATGEGRATPRCGPSSGS 414
Filament pfam00038
Intermediate filament protein;
1073-1350 1.30e-07

Intermediate filament protein;


Pssm-ID: 425436 [Multi-domain]  Cd Length: 313  Bit Score: 55.69  E-value: 1.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1073 EKGRQeLEKLKRKLDGEAGDLQEQ---------------VAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLK 1137
Cdd:pfam00038   18 DKVRF-LEQQNKDLETKISELRQKkgaepsrlyslyereIRELRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELN 96
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1138 SLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTEledtldstaaqqelrskREQEVTELKKTIEEE---VK 1214
Cdd:pfam00038   97 LRQSAEADIVGLRKDLDEATLARVDLEMKIESLKEELAFLKKN-----------------HEEEVRELQSQVSDTqvnVE 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1215 VHEAQVLDMrqrhTSALEELSEQLE-QSRRFKINLEKTKQA-LEGENAEMQKEVKLLQAAKLE-SEQRR--KKLEGQVQE 1289
Cdd:pfam00038  160 MDAARKLDL----TSALAEIRAQYEeIAEKNREEAEEWYQSkLEELQQAAARNGDALRSAKEEiTELRRqiQSLEIELQS 235
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542 1290 LQLRAGEGERAKAELVERlvkLQNELDGVSGTLGSTESktiKLAKDLATVESHLQDTQELL 1350
Cdd:pfam00038  236 LKKQKASLERQLAETEER---YELQLADYQELISELEA---ELQQIRQEMARQLREYQELL 290
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1391-1958 1.31e-07

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 56.95  E-value: 1.31e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1391 QMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRY-------EERVQACDKLEKGRTRLQQELDDVTVALD 1463
Cdd:TIGR04523  118 QKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYndlkkqkEELENELNLLEKEKLNIQKNIDKIKNKLL 197
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1464 QQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEmddlv 1543
Cdd:TIGR04523  198 KLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK----- 272
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1544 sskddvgknvhelerfkralEQQVQEMRAQMEELEDELQatedgklRLEVNMQALKAQHERELQNRDDANDDKKKllsKQ 1623
Cdd:TIGR04523  273 --------------------QKELEQNNKKIKELEKQLN-------QLKSEISDLNNQKEQDWNKELKSELKNQE---KK 322
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1624 VRELEAELDAERKQRAQALAGRKKLELDLQEamaqLDAANKGRDEagkQLRKLQAQMKELWREVEEARAAREEIFIQSRE 1703
Cdd:TIGR04523  323 LEEIQNQISQNNKIISQLNEQISQLKKELTN----SESENSEKQR---ELEEKQNEIEKLKKENQSYKQEIKNLESQIND 395
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1704 SEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELLND 1783
Cdd:TIGR04523  396 LESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSR 475
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1784 RYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSSVKsKYKMAIATLESKVAQLEEQLE------ 1857
Cdd:TIGR04523  476 SINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIE-KLESEKKEKESKISDLEDELNkddfel 554
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1858 ---------QESRERILSGKLVRRA-EKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASRR 1927
Cdd:TIGR04523  555 kkenlekeiDEKNKEIEELKQTQKSlKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
                          570       580       590
                   ....*....|....*....|....*....|.
gi 1033370542 1928 RMQRELEDVTESAESMNREVTSLRNRLSKVE 1958
Cdd:TIGR04523  635 NIKSKKNKLKQEVKQIKETIKEIRNKWPEII 665
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
892-1541 1.35e-07

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 56.65  E-value: 1.35e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  892 EKHTKTQMDLKELENKYQQLSE--EKTILAEQlqaetELFAEAEEMRARLAAR-KQELEDILHELESRVEEEEERCQQ-- 966
Cdd:pfam05483  169 EKTKKYEYEREETRQVYMDLNNniEKMILAFE-----ELRVQAENARLEMHFKlKEDHEKIQHLEEEYKKEINDKEKQvs 243
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  967 -LQGDKKKMQQHVQDLEEQLEEEEAARQKLqlekvstEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEE 1045
Cdd:pfam05483  244 lLLIQITEKENKMKDLTFLLEESRDKANQL-------EEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALE 316
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1046 EKVKSLSKLRNKyeaVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARV 1125
Cdd:pfam05483  317 EDLQIATKTICQ---LTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSEL 393
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1126 EDEAAQKNAVLKSLRELQAQLAELQEDMESeklarakaEKQRRDLGEELEAlkteledtldstaaqqelrskREQEVTEL 1205
Cdd:pfam05483  394 EEMTKFKNNKEVELEELKKILAEDEKLLDE--------KKQFEKIAEELKG---------------------KEQELIFL 444
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1206 KKTIEEEVKVHEAQVLDMR---QRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEV-----------KLLQA 1271
Cdd:pfam05483  445 LQAREKEIHDLEIQLTAIKtseEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEAsdmtlelkkhqEDIIN 524
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1272 AKLESEQRRKKLEG-QVQELQLRaGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQell 1350
Cdd:pfam05483  525 CKKQEERMLKQIENlEEKEMNLR-DELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLK--- 600
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1351 qeetRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLesl 1430
Cdd:pfam05483  601 ----KQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKL--- 673
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1431 svryEERVQACDKLEKGRTRLQQELDdvTVALDQQRQVVSALEKKQKKFDQMLAEEK----LISARYAEE---RDRAEAD 1503
Cdd:pfam05483  674 ----LEEVEKAKAIADEAVKLQKEID--KRCQHKIAEMVALMEKHKHQYDKIIEERDselgLYKNKEQEQssaKAALEIE 747
                          650       660       670
                   ....*....|....*....|....*....|....*...
gi 1033370542 1504 AREKETKVLSLSRALEEALETREEMERQNKQLRAEMDD 1541
Cdd:pfam05483  748 LSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
mukB PRK04863
chromosome partition protein MukB;
1455-1860 1.36e-07

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 56.89  E-value: 1.36e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1455 LDDVTVALDQQRQVVSALEKKQKKFD--QMLAEEKL--ISARYAeerdRAEADAREKETKVLSLSRALEEALETREEMER 1530
Cdd:PRK04863   232 FQDMEAALRENRMTLEAIRVTQSDRDlfKHLITESTnyVAADYM----RHANERRVHLEEALELRRELYTSRRQLAAEQY 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1531 QNKQLRAEMDDLVSSKDD------------------------VGKNVHELERFKRALEQQ---VQEMRAQMEELEDELQA 1583
Cdd:PRK04863   308 RLVEMARELAELNEAESDleqdyqaasdhlnlvqtalrqqekIERYQADLEELEERLEEQnevVEEADEQQEENEARAEA 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1584 TEDGKLRLEVNM----QALKAQHERELQNRD--DANDDKKKLLS------KQVRELEAELDAERKQRAQALagrkkleLD 1651
Cdd:PRK04863   388 AEEEVDELKSQLadyqQALDVQQTRAIQYQQavQALERAKQLCGlpdltaDNAEDWLEEFQAKEQEATEEL-------LS 460
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1652 LQEAMAQLDAANKGRDEAGKQLRKLQAQM---------KELWREVEEAR--AAR-----------EEIFIQSRESEKKLK 1709
Cdd:PRK04863   461 LEQKLSVAQAAHSQFEQAYQLVRKIAGEVsrseawdvaRELLRRLREQRhlAEQlqqlrmrlselEQRLRQQQRAERLLA 540
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1710 NLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQleeeldeeqsnMELLNDRYRKLS 1789
Cdd:PRK04863   541 EFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR-----------LAARAPAWLAAQ 609
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542 1790 MQVETLTTELGAERSFSQKTENARQQLERQNKDLRaklgemdssvkskykMAIATLESKVAQLEEQLEQES 1860
Cdd:PRK04863   610 DALARLREQSGEEFEDSQDVTEYMQQLLERERELT---------------VERDELAARKQALDEEIERLS 665
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
993-1358 1.66e-07

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 56.37  E-value: 1.66e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  993 QKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKE 1072
Cdd:pfam10174  369 QDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEK 448
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1073 EKgrqELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQaalarvedeaaQKNAVLKSLRELQAQLAELQED 1152
Cdd:pfam10174  449 ER---IIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELT-----------EKESSLIDLKEHASSLASSGLK 514
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1153 MESEKLARAKAEKQRRdlgEELEALKTELEdtldsTAAQQELRSKREQEVTELKKTIEEEVKVHEaqvlDMRQRHTSALE 1232
Cdd:pfam10174  515 KDSKLKSLEIAVEQKK---EECSKLENQLK-----KAHNAEEAVRTNPEINDRIRLLEQEVARYK----EESGKAQAEVE 582
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1233 ELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKA------ELVE 1306
Cdd:pfam10174  583 RLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSqqlqleELMG 662
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1033370542 1307 RLVKLQNELDGVSGTLGSTESKtiklakdLATVESHLQDtqelLQEETRQKL 1358
Cdd:pfam10174  663 ALEKTRQELDATKARLSSTQQS-------LAEKDGHLTN----LRAERRKQL 703
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1347-1713 1.81e-07

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 56.29  E-value: 1.81e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1347 QELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQmqslqqqVMETKKKLEEdagvaeAIEEARRRAAKD 1426
Cdd:pfam17380  298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERM-------AMERERELER------IRQEERKRELER 364
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1427 LESLSVRYE-ERVQACDKLEKGRtrlQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARyaeerdraEADAR 1505
Cdd:pfam17380  365 IRQEEIAMEiSRMRELERLQMER---QQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE--------QEEAR 433
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1506 EKETKVLSLSRALEEALETREEMERQnkqlraemddlvsskddvgknvHELERFKRALEQQVQEMRAQMEELEDELQATE 1585
Cdd:pfam17380  434 QREVRRLEEERAREMERVRLEEQERQ----------------------QQVERLRQQEEERKRKKLELEKEKRDRKRAEE 491
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1586 DGKLRLEVNMQALKAQHERElqnrddanDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDlqeamaqldaankg 1665
Cdd:pfam17380  492 QRRKILEKELEERKQAMIEE--------ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME-------------- 549
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1666 rdeagkQLRKLQAQMKELWREVE--EARAAREEIFIQSRESEKKLKNLEA 1713
Cdd:pfam17380  550 ------ERRRIQEQMRKATEERSrlEAMEREREMMRQIVESEKARAEYEA 593
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
1094-1753 1.95e-07

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 56.43  E-value: 1.95e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1094 QEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKlARAKAEKQRRDLGEE 1173
Cdd:COG3096    347 QEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQ-TRAIQYQQAIAALER 425
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1174 LEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRH------------TSALEELSEQLEQS 1241
Cdd:COG3096    426 AKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYqlvvaiagelarSEAWDVARELLREG 505
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1242 RRFKINLEKTKQ------ALEGENAEMQKEVKLL-----------QAAKLESEQRRkkLEGQVQELQLRAGEGERAKAEL 1304
Cdd:COG3096    506 PDQRHLAEQVQPlrmrlsELEQRLRQQQSAERLLadfckrqgknlDAEELEALHQE--LEALIESLSDSVSNAREQRMAL 583
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1305 VERLVKLQNELD----------GVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAM 1374
Cdd:COG3096    584 RQEQEQLQSRIQslmqrapvwlAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLEREREATVERDELGARKNALDEEIERL 663
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1375 LEQLEEEEAAKANFSRQMQSLQQQVMETKKKLeEDAGVAEAIEEARRRA--AKDLESLSVRYEERVQACDKLEKGRTRLQ 1452
Cdd:COG3096    664 SQPGGSEDQRLNALAERFGGVLLSEIYDDVTI-EDAPYFSALYGPSRHAivVPDLSQVKEHLEGLTDCPEDLYLIEGDPQ 742
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1453 QELDDVTVALDQQRQVVSALEKKQKKFDQM--------LAEEKLISARYAEERDRAEA------DAREKETKVLSLSR-- 1516
Cdd:COG3096    743 SFDDSVFSVDELEKAVVVKIADRQWRYSRFpeiplfgrAAREQRLESLHAERDVLSERhatlsfDVQKTQRLHQAFSRfi 822
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1517 --------------ALEEALETREEMER-------QNKQLRAEMDDLVSSKDDVGKNVHELERF-KRALEQQVQEMRAQM 1574
Cdd:COG3096    823 gshlavafeadpeaEIRQLNSRRNELERalsnhenDNQQQRIQFDQAKEGVTALNRLIPQLNLLaDESLADRVEEIRERL 902
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1575 EEL-EDELQATEDG----KLRLEVNMQALKAQHERELQNRDDANDDKKKLLSKQVRELEAELdaERK------QRAQALA 1643
Cdd:COG3096    903 DEAqEAARFIQQHGntlsKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVV--QRRahfsysDSAEMLS 980
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1644 GRKKLELDLQEAMAQLDAAnkgRDEAGKQLRKLQAQMKELwreveearaarEEIFIQSRESEKKLKNLEAELLQLQEDLA 1723
Cdd:COG3096    981 ENSDLNEKLRQRLEQAEAE---RTRAREQLRQHQAQLSQY-----------NQVLASLKSSYDTKKELLNELQQELQDIG 1046
                          730       740       750
                   ....*....|....*....|....*....|..
gi 1033370542 1724 --ASERAKRQAQQERDDLADELANGNSGKSAL 1753
Cdd:COG3096   1047 vrADSGAEERARIRRDELHAQLSTNRSRRNQL 1078
AAA_13 pfam13166
AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA ...
995-1238 2.86e-07

AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.


Pssm-ID: 433006 [Multi-domain]  Cd Length: 712  Bit Score: 55.84  E-value: 2.86e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  995 LQLEKVSTEAKLKKMEEDLLVLE--DQNSKLHKE---------RKLMEERLSEFTSHMAEE-EEKVKSLSKLRNKYEAVM 1062
Cdd:pfam13166  220 LKQKVIGKSSAIAELIKNPDLADwvEEGLELHKAhldtcpfcgQPLPAERKAALEAHFDDEfTEFQRRLQKLIEKYESAI 299
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1063 ADMEDRLKK---EEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEElrqalARKEAELQAALARVEDEAAQKNAVLKSL 1139
Cdd:pfam13166  300 SSLLAQLPAvsdLASLLSAFELDVEDLKAEAEVLNSQLDGLRQALEA-----KRKEPFKSIELDSVDAKIESIKDLVAAI 374
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1140 RELQAQLAELQEDMESEKlarAKAEKQ-RRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEA 1218
Cdd:pfam13166  375 NELIAKHNEITDNLEEEK---NKAKKKlWLFLVEEFKAEIDEYKDAYAGLEKAINSLTKEIKNATAEIKKLRAEIRELEK 451
                          250       260
                   ....*....|....*....|
gi 1033370542 1219 QVLDmrqrHTSALEELSEQL 1238
Cdd:pfam13166  452 QLRD----HKPGADEINKLL 467
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1514-1735 3.05e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 55.11  E-value: 3.05e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1514 LSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEV 1593
Cdd:COG4942     22 LSAAVLAAAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1594 NMQALKAQHERE----------------------LQNRDDANDDKK---------KLLSKQVRELEAELDAERKQRAQAL 1642
Cdd:COG4942    102 RLNALEVQEREQrrrlaeqlaalqrsgrnpppalLVSPEDAQRSVRlaiyygalnPARAERIDALKATLKQLAAVRAEIA 181
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1643 AGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIfiqsresEKKLKNLEAELLQLQEDL 1722
Cdd:COG4942    182 AEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRL-------KNEIASAEAAAAKAREAA 254
                          250
                   ....*....|...
gi 1033370542 1723 AASERAKRQAQQE 1735
Cdd:COG4942    255 AAAEAAAARARAA 267
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1495-1959 3.14e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 55.82  E-value: 3.14e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1495 EERDRAeADAREKETKVLSLSRALEEALETREEmERQNKQLRAEMDDLVSSKDDVGKnvhELERFkralEQQVQEMRAQM 1574
Cdd:PRK02224   166 EYRERA-SDARLGVERVLSDQRGSLDQLKAQIE-EKEEKDLHERLNGLESELAELDE---EIERY----EEQREQARETR 236
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1575 EELEDELQATEDGKLRLEVNMQALkaqheRELQNRDDANDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQE 1654
Cdd:PRK02224   237 DEADEVLEEHEERREELETLEAEI-----EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1655 AMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELlqlqeDLAASERAKRQAQQ 1734
Cdd:PRK02224   312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL-----EEAREAVEDRREEI 386
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1735 ErddladelangnsgksALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELgaeRSFSQKTENARQ 1814
Cdd:PRK02224   387 E----------------ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL---RTARERVEEAEA 447
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1815 QLERQN-----KDLRaklGEMDSSVKSKYKMAIATLESKVAQLEEQLEqESRERILSGKLVRRAEKKLKEVILQVDEERR 1889
Cdd:PRK02224   448 LLEAGKcpecgQPVE---GSPHVETIEEDRERVEELEAELEDLEEEVE-EVEERLERAEDLVEAEDRIERLEERREDLEE 523
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1890 NADQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASRRRMQRELEDVTESAESMNREVTSLRNRLSKVER 1959
Cdd:PRK02224   524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER 593
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
833-1367 3.49e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 55.49  E-value: 3.49e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  833 MKKQQQMSALKVMQRNCAAYLKLrhwQWWRLFTKVKPLLQVTRQDEVMQAKAVELQKVQEKHTKTQMdlkELENKYQQLS 912
Cdd:pfam15921  426 MEVQRLEALLKAMKSECQGQMER---QMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKM---TLESSERTVS 499
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  913 EEKTILAEQLQAETELFAEAEEMRARLAARKQELEDIL----HELESRVEEEEERCQQLQGDK--KKMQQHVQDLEEQLE 986
Cdd:pfam15921  500 DLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKnegdHLRNVQTECEALKLQMAEKDKviEILRQQIENMTQLVG 579
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  987 EEEAARQKLQLEKVSTEAKL--KKME-EDLLVLEDQNSKLHKErklMEERLSEFtshmaeEEEKVKSLSKLRNKYEAVMA 1063
Cdd:pfam15921  580 QHGRTAGAMQVEKAQLEKEIndRRLElQEFKILKDKKDAKIRE---LEARVSDL------ELEKVKLVNAGSERLRAVKD 650
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1064 DMEDR---LKKEEKGRQEL-------EKLKR-------KLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVE 1126
Cdd:pfam15921  651 IKQERdqlLNEVKTSRNELnslsedyEVLKRnfrnkseEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM 730
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1127 DEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTEledtldSTAAQQELRSKREQEVTELK 1206
Cdd:pfam15921  731 GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATE------KNKMAGELEVLRSQERRLKE 804
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1207 KTIEEEVKVHEAQVldmrqRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVK--LLQ-AAKLESEQRRKKL 1283
Cdd:pfam15921  805 KVANMEVALDKASL-----QFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSVKprLLQpASFTRPHSNVPSS 879
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1284 EGQVQELQLRAGEGERAKAELVERLVKLQNELDGV---SGTLGSTESKTIKLAKDLATVESHLQD--TQELLQEETRQKL 1358
Cdd:pfam15921  880 QSTASFLSHHSIKCEMLKEDPTRDLKQLLQELRSVineEPNVKLSKAELVGRQTSLGALEDRVRDciIESSLRSDICHSS 959

                   ....*....
gi 1033370542 1359 NLSSRVRQL 1367
Cdd:pfam15921  960 STVFETECL 968
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
908-1266 3.73e-07

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 55.37  E-value: 3.73e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  908 YQQLSEEKTILAEQLQAETELFAEaeEMRARLAARKQELEDILHELESRVEEEEERcQQLQGDKKKMQQhvqDLEEQLEE 987
Cdd:COG5185    244 FLKLEDNYEPSEQELKLGFEKFVH--IINTDIANLKTQNDNLYEKIQEAMKISQKI-KTLREKWRALKS---DSNKYENY 317
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  988 EEAARQKLQ-----LEKVSTEAKLKkmEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVM 1062
Cdd:COG5185    318 VNAMKQKSQewpgkLEKLKSEIELK--EEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLT 395
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1063 ADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQqleelrqalARKEAELQAALARV-EDEAAQKNAVLKSLRE 1141
Cdd:COG5185    396 KSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGH---------NVNDSSLKINIEQLfPKGSGINESIKKSILE 466
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1142 LQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLdSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVL 1221
Cdd:COG5185    467 LNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELEL-SEANSKFELSKEENERELVAQRIEIEKLEKELNDL 545
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1033370542 1222 DMrQRHTSALEelSEQLEQSRRfkINLEKTKQALEGENAEMQKEV 1266
Cdd:COG5185    546 NL-LSKTSILD--AEQLVQSTE--IKLDELKVDLNRKRYKIHKQV 585
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1634-1963 3.83e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 55.49  E-value: 3.83e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1634 ERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEAraareeifiqsreseKKLKNLEA 1713
Cdd:COG1196    156 ERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKA---------------ERYQELKA 220
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1714 ELLQLQEDLAASEraKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIgqleeeldeeqsnmELLNDRYRKLSMQVE 1793
Cdd:COG1196    221 ELRELELALLLAK--LKELRKELEELEEELSRLEEELEELQEELEEAEKEI--------------EELKSELEELREELE 284
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1794 TLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSSVKsKYKMAIATLESKVAQLEEQLEQESRERILSGKLVRRA 1873
Cdd:COG1196    285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE-ELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1874 EKKLKEVILQVDEE----RRNADQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASRRRMQRELEDVTESAESMNREVTS 1949
Cdd:COG1196    364 EEKLSALLEELEELfealREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEE 443
                          330
                   ....*....|....
gi 1033370542 1950 LRNRLSKVERRQRK 1963
Cdd:COG1196    444 LNEELEELEEQLEE 457
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
998-1536 5.53e-07

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 54.74  E-value: 5.53e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  998 EKVSTEAKLKKMEEDLlvleDQNSKLHK-ERKLMEERLSEFTSHMAEEEEK-------VKSLSKLRNKYEAVMADMEDRL 1069
Cdd:pfam05557    3 ELIESKARLSQLQNEK----KQMELEHKrARIELERKASALARQLERESDRnqelqkrIRLLEKREAEAEEALREQAELN 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1070 KKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQknavLKSLRELQAQLAEL 1149
Cdd:pfam05557   79 RLKKKNLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRQELELSSTNSELEELQER----LDLQKAKAQEAEQL 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1150 QEDMESEKLARAKAEKQRRDL----------GEELEALKTELEDTLDSTAAQQELRSKREQ-------------EVTELK 1206
Cdd:pfam05557  155 RQNLEAQQSSLAEAEQRIKELefeiqsqeqdSEIVKNSKSELARIPELERELERLREHNKHlnenienklllkeEVEDLK 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1207 KTIEEEVKVH-EAQVLDMRQRHTSALEELSEQLEQS-----------RRFKINLEKTKQALEGENAEMQKEVKLLQAAKL 1274
Cdd:pfam05557  235 RKLEREEGYReELATLELEKEKLEQELKSWEKLAQDtglnlrspedlSRRIEQLQQREITLKEENSSLTSSARQLEKAQR 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1275 ESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTEsktiklaKDLATVESHLQDTQ------E 1348
Cdd:pfam05557  315 ELEQELAQYLKNIEDLNKKLKRHKALVRRLQRRVLLLTKERDGMRAILESYD-------KELTPSNYSPQLLErieeaeD 387
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1349 LLQEETRQKLNLSSRVRQLEEEKAAMLEQLeeeeaakANFSRQMQSLQQQVmetkkkLEEDAGVAEAIEEARRRAAKDLE 1428
Cdd:pfam05557  388 MTQDMQAHNEEMEAQLSVAEEELGGYKQQA-------TTLERELQALRQQE------SLADPSYSKEEVDSLRRKLETLE 454
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1429 SLSVRYEERVQACDkLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARyaeERDRAEADAREKE 1508
Cdd:pfam05557  455 AERQRLREQKNELE-MELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRANDLEKLQAEIERLK---RRLKKLEDDLEQV 530
                          570       580       590
                   ....*....|....*....|....*....|
gi 1033370542 1509 TKVL--SLSRALEEALETREEMERQNKQLR 1536
Cdd:pfam05557  531 GSLPetTSTMNFKEVLELRKELESAELKNQ 560
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1097-1373 5.79e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 54.34  E-value: 5.79e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1097 VAELQQQLEELRQALARKEAElqaaLARVEDEAAQknavlkslreLQAQLAELQEDMeseklarAKAEKQRRDLGEELEA 1176
Cdd:COG4942     33 AAADDKQLKQIQKEIAALEKK----IREQQDQRAK----------LEKQLKSLETEI-------ASLEAQLIETADDLKK 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1177 LKTELEDTLDSTAAQQELRSKREQEVTELkktieeevkvheAQVLDMRQRHTSALEELS-EQLEQSRRFKINLEKTKQAL 1255
Cdd:COG4942     92 LRKQIADLNARLNALEVQEREQRRRLAEQ------------LAALQRSGRNPPPALLVSpEDAQRSVRLAIYYGALNPAR 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1256 EGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKD 1335
Cdd:COG4942    160 AERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNE 239
                          250       260       270
                   ....*....|....*....|....*....|....*...
gi 1033370542 1336 LATVEshLQDTQELLQEETRQKLNLssRVRQLEEEKAA 1373
Cdd:COG4942    240 IASAE--AAAAKAREAAAAAEAAAA--RARAAEAKRTG 273
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
880-1314 5.83e-07

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 54.73  E-value: 5.83e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  880 MQAKAVELQKVQEKHTKTQMDLKELEnkyQQLSEEKTILAEQLQAET---ELFAEAEEMRARLAARKQELEDIlhelesr 956
Cdd:pfam05483  386 LQKKSSELEEMTKFKNNKEVELEELK---KILAEDEKLLDEKKQFEKiaeELKGKEQELIFLLQAREKEIHDL------- 455
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  957 veeeeercqqlqgdkkKMQQHVQDLEEQLEEEEAARQKLQLEKvsteAKLKKMEedllvLEDQNSKLHKERKLMEERLSE 1036
Cdd:pfam05483  456 ----------------EIQLTAIKTSEEHYLKEVEDLKTELEK----EKLKNIE-----LTAHCDKLLLENKELTQEASD 510
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1037 FTSHMAEEEEKVKSLSKlrnKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEA 1116
Cdd:pfam05483  511 MTLELKKHQEDIINCKK---QEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEK 587
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1117 ELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRS 1196
Cdd:pfam05483  588 QMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKK 667
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1197 KREQ----EVTELKKTIEEEVKVHEAqvLDMRQRHTSAlEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAA 1272
Cdd:pfam05483  668 ISEEklleEVEKAKAIADEAVKLQKE--IDKRCQHKIA-EMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAAL 744
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|..
gi 1033370542 1273 KLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNE 1314
Cdd:pfam05483  745 EIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
1104-1880 8.43e-07

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 54.46  E-value: 8.43e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1104 LEELRQALARKEAELQAA----LARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLaRAKAEKQRRDLgEELEALKT 1179
Cdd:pfam12128  181 IDKIAKAMHSKEGKFRDVksmiVAILEDDGVVPPKSRLNRQQVEHWIRDIQAIAGIMKI-RPEFTKLQQEF-NTLESAEL 258
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1180 ELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGEN 1259
Cdd:pfam12128  259 RLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAD 338
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1260 AEM----QKEVKLLQAAKLESEQRRKKLEGQVQELQlragegerAKAELVERLVKLQNELDgVSGTLGSTESKTIKLAKD 1335
Cdd:pfam12128  339 IETaaadQEQLPSWQSELENLEERLKALTGKHQDVT--------AKYNRRRSKIKEQNNRD-IAGIKDKLAKIREARDRQ 409
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1336 LATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAmleqleeeeaakanfsrQMQSLQQQVMETKKKLEEDAGVAEA 1415
Cdd:pfam12128  410 LAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLG-----------------ELKLRLNQATATPELLLQLENFDER 472
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1416 IEEARrraakdlESLSVRYEERVQACDKLEKGRTRLQQelddvtvALDQQRQVVSALEKKQKKFDQmlAEEKLISARYA- 1494
Cdd:pfam12128  473 IERAR-------EEQEAANAEVERLQSELRQARKRRDQ-------ASEALRQASRRLEERQSALDE--LELQLFPQAGTl 536
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1495 EERDRAEA-DAREKETKVLSlsraleealetREEMERQnkqlraemdDLVSSKDDvGKNVHELERFKRALeqqvqemRAQ 1573
Cdd:pfam12128  537 LHFLRKEApDWEQSIGKVIS-----------PELLHRT---------DLDPEVWD-GSVGGELNLYGVKL-------DLK 588
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1574 MEELEDELQATEDGKLRLEVNMQALKAQHERELQnrddanddkkklLSKQVRELEAELDAERKQRAQALAGRKKLELDLQ 1653
Cdd:pfam12128  589 RIDVPEWAASEEELRERLDKAEEALQSAREKQAA------------AEEQLVQANGELEKASREETFARTALKNARLDLR 656
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1654 ----EAMAQLDAANKGR----DEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSR-ESEKKLKNLEAELlQLQEDLAA 1724
Cdd:pfam12128  657 rlfdEKQSEKDKKNKALaerkDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARtEKQAYWQVVEGAL-DAQLALLK 735
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1725 SERAKRQAQQERDDLADELANGNSGKSALLDEkrhlearigqleeeldeeqsnmellnDRYRKLSMQVETLTTELGAERS 1804
Cdd:pfam12128  736 AAIAARRSGAKAELKALETWYKRDLASLGVDP--------------------------DVIAKLKREIRTLERKIERIAV 789
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1805 FSQKTENARQQLERQNKDLRAKLGEMDSSVKSKYKMAIATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEV 1880
Cdd:pfam12128  790 RRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGL 865
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
886-1270 1.00e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 53.87  E-value: 1.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  886 ELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETelfaeAEEMRARLAARKQELEDI---LHELESRVEEEEE 962
Cdd:TIGR04523  268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDW-----NKELKSELKNQEKKLEEIqnqISQNNKIISQLNE 342
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  963 RCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMA 1042
Cdd:TIGR04523  343 QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE 422
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1043 EEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQaAL 1122
Cdd:TIGR04523  423 LLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELK-KL 501
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1123 ARVEDEAAQKNAVLKSlreLQAQLAELQEDMESEKLaraKAEKQRRDLGEELEALKTELEDTL--DSTAAQQELRSKREQ 1200
Cdd:TIGR04523  502 NEEKKELEEKVKDLTK---KISSLKEKIEKLESEKK---EKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQ 575
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1201 EVTELKKT---IEEEVKVHEAQVLDMRQR---HTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQ 1270
Cdd:TIGR04523  576 TQKSLKKKqeeKQELIDQKEKEKKDLIKEieeKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK 651
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
835-1508 1.16e-06

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 53.90  E-value: 1.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  835 KQQQMSALKVMQRNCAAYLKLRHWqwwRLFTKVKPLLQVTRQDEVMQAKAVELQKVQEKHTKTQMDLKELE---NKYQQL 911
Cdd:TIGR00606  424 KQEQADEIRDEKKGLGRTIELKKE---ILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEknsLTETLK 500
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  912 SEEKTILAEQLQAETELFAEAEEMrarlaARKQELEDILHELESRVEEEEERCQQLQGDKKKMQQHVQDLEEQ---LEEE 988
Cdd:TIGR00606  501 KEVKSLQNEKADLDRKLRKLDQEM-----EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfpnKKQL 575
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  989 EAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAE----EEEKVKsLSKLRNKYE----- 1059
Cdd:TIGR00606  576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDvcgsQDEESD-LERLKEEIEksskq 654
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1060 --------AVMADMEDRLKKEEKGR----QELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVED 1127
Cdd:TIGR00606  655 ramlagatAVYSQFITQLTDENQSCcpvcQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPG 734
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1128 EAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRskreqevtELKK 1207
Cdd:TIGR00606  735 RQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELK--------DVER 806
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1208 TIEEEVKvhEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEgenaEMQKEVKLLQAAKLESEQRRkklegqv 1287
Cdd:TIGR00606  807 KIAQQAA--KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQ----DQQEQIQHLKSKTNELKSEK------- 873
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1288 qelqLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKdlaTVESHLQDTQELLQEETRQKLNLSSRVRQL 1367
Cdd:TIGR00606  874 ----LQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLET---FLEKDQQEKEELISSKETSNKKAQDKVNDI 946
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1368 EEE-KAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYE------ERVQA 1440
Cdd:TIGR00606  947 KEKvKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERwlqdnlTLRKR 1026
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542 1441 CDKLEKGRTRLQQELDDvtVALDQQRQVVSALEKKQKKFDQMLAEEKLISAR---YAEERDRAEADAREKE 1508
Cdd:TIGR00606 1027 ENELKEVEEELKQHLKE--MGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRqkgYEKEIKHFKKELREPQ 1095
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
1173-1726 1.74e-06

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 53.19  E-value: 1.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1173 ELEALKTELEDtLDSTAAQQELRSKREQ-----EVTELKKTIEEEVKVHEAQVLDMRQ---RHTSALEELSEQLEQSRRF 1244
Cdd:pfam05557    3 ELIESKARLSQ-LQNEKKQMELEHKRARielerKASALARQLERESDRNQELQKRIRLlekREAEAEEALREQAELNRLK 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1245 KINLEKTKQALEgenaemQKEVKLLQAAKLES----EQRRKKLEGQVQELQLRAGEGEraKAELVERLVKLQNELDGVSG 1320
Cdd:pfam05557   82 KKNLEALNKKLN------EKESQLADAREVISclknELSELRRQIQRQELELSSTNSE--LEELQERLDLQKAKAQEAEQ 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1321 TLGSTESKTiklaKDLATVESHLQDTQELLQEETRQKL---NLSSRVRQLEEekaamleqleeeeaakanfsrqMQSLQQ 1397
Cdd:pfam05557  154 LRQNLEAQQ----SSLAEAEQRIKELEFEIQSQEQDSEivkNSKSELARIPE----------------------LERELE 207
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1398 QVMETKKKLEEDAGVAEAIEEArrraAKDLESLSVRYEERVQACDKLEKGRTRLQQELDD-VTVALDQQRQVVSAlEKKQ 1476
Cdd:pfam05557  208 RLREHNKHLNENIENKLLLKEE----VEDLKRKLEREEGYREELATLELEKEKLEQELKSwEKLAQDTGLNLRSP-EDLS 282
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1477 KKFDQMLAEEKLISAR-YAEERD--RAEADAREKETKVLSLSRALEEALETREEMERQNKQL----------RAEMDDLV 1543
Cdd:pfam05557  283 RRIEQLQQREITLKEEnSSLTSSarQLEKAQRELEQELAQYLKNIEDLNKKLKRHKALVRRLqrrvllltkeRDGMRAIL 362
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1544 SSKDD----------VGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQherELQNRDDAN 1613
Cdd:pfam05557  363 ESYDKeltpsnyspqLLERIEEAEDMTQDMQAHNEEMEAQLSVAEEELGGYKQQATTLERELQALRQQ---ESLADPSYS 439
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1614 DDKKKLLSKQVRELEAELD--AERKQRAQALAGRKKLELDLQEAMA-----QLDAANKGRDEAGKQLRKLQAQMKELWRE 1686
Cdd:pfam05557  440 KEEVDSLRRKLETLEAERQrlREQKNELEMELERRCLQGDYDPKKTkvlhlSMNPAAEAYQQRANDLEKLQAEIERLKRR 519
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|
gi 1033370542 1687 VEEARAAREEIfiqSRESEKKLKNLEAELLQLQEDLAASE 1726
Cdd:pfam05557  520 LKKLEDDLEQV---GSLPETTSTMNFKEVLELRKELESAE 556
PRK01156 PRK01156
chromosome segregation protein; Provisional
1092-1614 3.07e-06

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 52.60  E-value: 3.07e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1092 DLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAEL--QEDMESEKLARAKAEKQRRD 1169
Cdd:PRK01156   187 YLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELssLEDMKNRYESEIKTAESDLS 266
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1170 LGEELEALKTELEDTLDSTAAQQELRSKRE-QEVTELKKTIEEEVKV-----HEAQVLDMRQRHTSALEELSEQLEQSRR 1243
Cdd:PRK01156   267 MELEKNNYYKELEERHMKIINDPVYKNRNYiNDYFKYKNDIENKKQIlsnidAEINKYHAIIKKLSVLQKDYNDYIKKKS 346
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1244 FKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLG 1323
Cdd:PRK01156   347 RYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVS 426
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1324 STESKTIKLAKDLATVE----------------SHLQD--TQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAK 1385
Cdd:PRK01156   427 SLNQRIRALRENLDELSrnmemlngqsvcpvcgTTLGEekSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRK 506
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1386 A-----------NFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRR-AAKDLESLSVRYEERVQAcdklekgrtrlQQ 1453
Cdd:PRK01156   507 EyleseeinksiNEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRyKSLKLEDLDSKRTSWLNA-----------LA 575
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1454 ELDDVTVALDQQRQvvsalEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEAletrEEMERQNK 1533
Cdd:PRK01156   576 VISLIDIETNRSRS-----NEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEI----QENKILIE 646
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1534 QLRAEMDDLvssKDDVGKnvhelerfKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDAN 1613
Cdd:PRK01156   647 KLRGKIDNY---KKQIAE--------IDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELS 715

                   .
gi 1033370542 1614 D 1614
Cdd:PRK01156   716 D 716
PRK09039 PRK09039
peptidoglycan -binding protein;
1031-1183 3.32e-06

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 51.51  E-value: 3.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1031 EERLSEFTSHMAEEEEKVkSLSKLRNkyeavmADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQA 1110
Cdd:PRK09039    52 DSALDRLNSQIAELADLL-SLERQGN------QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1033370542 1111 LARKEAELQAALARVEDEAAQknavlksLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELE-ALKTELED 1183
Cdd:PRK09039   125 LDSEKQVSARALAQVELLNQQ-------IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNvALAQRVQE 191
PRK11281 PRK11281
mechanosensitive channel MscK;
1060-1291 3.36e-06

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 52.22  E-value: 3.36e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1060 AVMADME---DRLKKEEKGRQELEKLKRKLDgeagDLQEQVAELQQQLEELRQALArkeaelqaalarveDEAAQKNAVL 1136
Cdd:PRK11281    60 LVQQDLEqtlALLDKIDRQKEETEQLKQQLA----QAPAKLRQAQAELEALKDDND--------------EETRETLSTL 121
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1137 kSLRELQAQLAELQEDMESEKLARAKAEKQrrdlgeeLEALKTELEDtldstaAQQEL--RSKREQEVTELKKTIEEEVK 1214
Cdd:PRK11281   122 -SLRQLESRLAQTLDQLQNAQNDLAEYNSQ-------LVSLQTQPER------AQAALyaNSQRLQQIRNLLKGGKVGGK 187
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1215 VHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQA----LEGENAEMQKEVKLLQAAKleSEQRRKKLEGQVQEL 1290
Cdd:PRK11281   188 ALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKqrdyLTARIQRLEHQLQLLQEAI--NSKRLTLSEKTVQEA 265

                   .
gi 1033370542 1291 Q 1291
Cdd:PRK11281   266 Q 266
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
1462-1863 3.49e-06

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 51.81  E-value: 3.49e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1462 LDQQRQVVSALEKKQKKFDQMLAEEKlisARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDD 1541
Cdd:pfam07888   36 LEECLQERAELLQAQEAANRQREKEK---ERYKRDREQWERQRRELESRVAELKEELRQSREKVEELEEKYKELSRSGEE 112
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1542 LVSSKDdvgknvhelerfkrALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKLLS 1621
Cdd:pfam07888  113 LAEEKD--------------ALLAQRAESEARIRELEEDIKTLTQRVLERETELERMKERVKKAGAQRKEEEAERKQLQA 178
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1622 K--QVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLdaankgrdeagkQLRKLQAQMKELWRE--VEEARAAREEI 1697
Cdd:pfam07888  179 KlqQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTL------------TQKLTTAHRKEAENEalLEELRSLQERL 246
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1698 FIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSN 1777
Cdd:pfam07888  247 NASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAE 326
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1778 MELLNDRYRKLSMQVETLTTELGAERSFSQ-KTENARQQLERQNKDLRAKLGEmdssvKSKYKMAIATLESKVAQLEEQL 1856
Cdd:pfam07888  327 LQRLEERLQEERMEREKLEVELGREKDCNRvQLSESRRELQELKASLRVAQKE-----KEQLQAEKQELLEYIRQLEQRL 401

                   ....*..
gi 1033370542 1857 EQESRER 1863
Cdd:pfam07888  402 ETVADAK 408
HMMR_N pfam15905
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ...
999-1264 3.67e-06

Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


Pssm-ID: 435008 [Multi-domain]  Cd Length: 329  Bit Score: 51.36  E-value: 3.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  999 KVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKL------RNKYEAVMADMEDRLkKE 1072
Cdd:pfam15905   55 KVKSLELKKKSQKDLKESKDQKELEKEIRALVQERGEQDKRLQALEEELEKVEAKLnaavreKTSLSASVASLEKQL-LE 133
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1073 EKGRQELEKLKRKLDGEagdlQEQVAELQQQLEELRQALarkEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQE- 1151
Cdd:pfam15905  134 LTRVNELLKAKFSEDGT----QKKMSSLSMELMKLRNKL---EAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEk 206
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1152 --DMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQR--- 1226
Cdd:pfam15905  207 lvSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKQIKDLNEKckl 286
                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1033370542 1227 -HTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQK 1264
Cdd:pfam15905  287 lESEKEELLREYEEKEQTLNAELEELKEKLTLEEQEHQK 325
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1566-1824 3.70e-06

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 51.95  E-value: 3.70e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1566 QVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRddanddkkkllsKQVRELEAELDAERKQRAQALAGR 1645
Cdd:COG4372     75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQER------------EAVRQELAAARQNLAKAQQELARL 142
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1646 KKLELDLQEAMAQLDAAnkgRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQ---EDL 1722
Cdd:COG4372    143 TKQAQDLQTRLKTLAEQ---RRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQartEEL 219
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1723 AASERAKRQAQQE---RDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQveTLTTEL 1799
Cdd:COG4372    220 ARRAAAAQQTAQAiqqRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQ--AAATQR 297
                          250       260
                   ....*....|....*....|....*.
gi 1033370542 1800 GAERSFS-QKTENARQQLERQNKDLR 1824
Cdd:COG4372    298 GQVLAGAaQRVAQAQAQAQAQAQLLS 323
PRK01156 PRK01156
chromosome segregation protein; Provisional
1442-1983 3.79e-06

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 52.21  E-value: 3.79e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1442 DKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQM---LAEEKLISARYAEERDRAEADAREKETKVLSLSRAL 1518
Cdd:PRK01156   162 NSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIkkqIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAL 241
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1519 EEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKR-----------------ALEQQVQEMRAQMEELEDEL 1581
Cdd:PRK01156   242 NELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKiindpvyknrnyindyfKYKNDIENKKQILSNIDAEI 321
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1582 QATEDGKLRLEVnMQALKAQHERELQNRDDANDDKKKL----------------LSKQVRELEAELDAERKQRAQALagr 1645
Cdd:PRK01156   322 NKYHAIIKKLSV-LQKDYNDYIKKKSRYDDLNNQILELegyemdynsylksiesLKKKIEEYSKNIERMSAFISEIL--- 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1646 KKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQS------------------RESEKK 1707
Cdd:PRK01156   398 KIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSvcpvcgttlgeeksnhiiNHYNEK 477
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1708 LKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRk 1787
Cdd:PRK01156   478 KSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYK- 556
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1788 lSMQVETLTTE------LGAERSfSQKTENARQQLERQNK---DLRAKLGEMDSS---VKSKYKMAIATLESKVAQLEEQ 1855
Cdd:PRK01156   557 -SLKLEDLDSKrtswlnALAVIS-LIDIETNRSRSNEIKKqlnDLESRLQEIEIGfpdDKSYIDKSIREIENEANNLNNK 634
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1856 LEQESRERILSGKLvRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLeeaeeeaSRANASRRRMQRELED 1935
Cdd:PRK01156   635 YNEIQENKILIEKL-RGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKAL-------DDAKANRARLESTIEI 706
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*...
gi 1033370542 1936 VTESAESMNREVTSLRNRLskvERRQRKRTPLSFTTRtVRQVFRLDGV 1983
Cdd:PRK01156   707 LRTRINELSDRINDINETL---ESMKKIKKAIGDLKR-LREAFDKSGV 750
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
1039-1181 4.58e-06

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 51.75  E-value: 4.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1039 SHMAEEEEKVkslsklrnkyEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALarkEAEL 1118
Cdd:PRK00409   509 KLIGEDKEKL----------NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA---EKEA 575
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1033370542 1119 QAALARVEDEAAQknaVLKSLRELQaqlaelqeDMESEKLARAKAEKQRRDLGEELEALKTEL 1181
Cdd:PRK00409   576 QQAIKEAKKEADE---IIKELRQLQ--------KGGYASVKAHELIEARKRLNKANEKKEKKK 627
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
903-1150 4.66e-06

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 51.56  E-value: 4.66e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  903 ELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDIlHELESRVEEEEERCQQLQgdkKKMQQHVQDLE 982
Cdd:COG4372     75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAV-RQELAAARQNLAKAQQEL---ARLTKQAQDLQ 150
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  983 EQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKlmeerlseftshMAEEEEKVkslskLRNKYEAVM 1062
Cdd:COG4372    151 TRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSA------------QIEQEAQN-----LATRANAAQ 213
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1063 AdMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAelqqQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLREL 1142
Cdd:COG4372    214 A-RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA----ARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRL 288

                   ....*...
gi 1033370542 1143 QAQLAELQ 1150
Cdd:COG4372    289 RQQAAATQ 296
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
993-1168 5.20e-06

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 49.67  E-value: 5.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  993 QKLQLEKVSTEAK-------LKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKvksLSKLRNKYEAVMAdm 1065
Cdd:COG1579     13 QKLDLEKDRLEPRikeirkaLKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER---IKRAEEKLSAVKD-- 87
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1066 EDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNavlKSLRELQAQ 1145
Cdd:COG1579     88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR---EEGQELSSK 164
                          170       180
                   ....*....|....*....|...
gi 1033370542 1146 LAELQEDMESEKLarAKAEKQRR 1168
Cdd:COG1579    165 REELKEKLDPELL--SEYERIRK 185
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
874-1652 5.58e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 51.76  E-value: 5.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  874 TRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQ----LQAETELFAEAEEMRARLAARKQELEDI 949
Cdd:pfam12128  283 ETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQhgafLDADIETAAADQEQLPSWQSELENLEER 362
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  950 LHELESRVEEEEERCQQLQgdKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDL-LVLEDQNSKLHKERK 1028
Cdd:pfam12128  363 LKALTGKHQDVTAKYNRRR--SKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELrEQLEAGKLEFNEEEY 440
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1029 LMEERLSE----FTSHMAEEEEK------VKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLdgeaGDLQEQVA 1098
Cdd:pfam12128  441 RLKSRLGElklrLNQATATPELLlqlenfDERIERAREEQEAANAEVERLQSELRQARKRRDQASEAL----RQASRRLE 516
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1099 ELQQQLEELRQALA----------RKEAEL-QAALARVED-------------------------------EAAQKNAVL 1136
Cdd:pfam12128  517 ERQSALDELELQLFpqagtllhflRKEAPDwEQSIGKVISpellhrtdldpevwdgsvggelnlygvkldlKRIDVPEWA 596
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1137 KSLRELQAQLAELQEDMESEK-----------LARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTEL 1205
Cdd:pfam12128  597 ASEEELRERLDKAEEALQSARekqaaaeeqlvQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAER 676
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1206 KKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRrfkinlektkqalegenaeMQKevkllQAAKLESEQRRKKLEG 1285
Cdd:pfam12128  677 KDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREAR-------------------TEK-----QAYWQVVEGALDAQLA 732
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1286 QVQELQLRAGEGerAKAELVERLVKLQNELDGvsgtLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVR 1365
Cdd:pfam12128  733 LLKAAIAARRSG--AKAELKALETWYKRDLAS----LGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWL 806
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1366 QLEEEKAAmleqleeeeaAKANFSRQMQSLQQQVmetkKKLEEDAGVAEAIEEARRRAAKDL-----ESLS-VRYEERVQ 1439
Cdd:pfam12128  807 QRRPRLAT----------QLSNIERAISELQQQL----ARLIADTKLRRAKLEMERKASEKQqvrlsENLRgLRCEMSKL 872
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1440 ACDKLEKGRTRLQQELDDVTVALDQQRQV----VSALEKKQKKFDQMLAeeKLISARYAEERDRAEADAREKETKVLSLS 1515
Cdd:pfam12128  873 ATLKEDANSEQAQGSIGERLAQLEDLKLKrdylSESVKKYVEHFKNVIA--DHSGSGLAETWESLREEDHYQNDKGIRLL 950
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1516 RALEEALETREEMERQNKQLRAEMDDLVSSKD-DVGKNVHELERFKRALEQQVQEMRAQMEELEDeLQATEDGKLRLEVN 1594
Cdd:pfam12128  951 DYRKLVPYLEQWFDVRVPQSIMVLREQVSILGvDLTEFYDVLADFDRRIASFSRELQREVGEEAF-FEGVSESAVRIRSK 1029
                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1595 MQALkaQHERELQNRDDAnddKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDL 1652
Cdd:pfam12128 1030 VSEL--EYWPELRVFVKA---FRLWKSDGFGELPDEEYTQAMRRASDILPSAALSGGL 1082
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
1006-1408 8.67e-06

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 50.66  E-value: 8.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1006 LKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEkvkSLSKLRNKYEavmaDMEDRLKKEEKGRQELEKLKRK 1085
Cdd:pfam07888   47 LQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKE---ELRQSREKVE----ELEEKYKELSRSGEELAEEKDA 119
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1086 LDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKnavlkslRELQAQLAELQEDMESeklarakAEK 1165
Cdd:pfam07888  120 LLAQRAESEARIRELEEDIKTLTQRVLERETELERMKERVKKAGAQR-------KEEEAERKQLQAKLQQ-------TEE 185
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1166 QRRDLGEELEALKTELEdtldstaaqqelrsKREQEVTELKKTIEEevkvhEAQVLDMRQRHTSALEELSEQLEQSRRFK 1245
Cdd:pfam07888  186 ELRSLSKEFQELRNSLA--------------QRDTQVLQLQDTITT-----LTQKLTTAHRKEAENEALLEELRSLQERL 246
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1246 INLEKTKQALEGENAEMQKEVKLLQA----AKLESEQRRKKL--------EGQVQELQLRAGEGERAKAElVERLVKLQN 1313
Cdd:pfam07888  247 NASERKVEGLGEELSSMAAQRDRTQAelhqARLQAAQLTLQLadaslalrEGRARWAQERETLQQSAEAD-KDRIEKLSA 325
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1314 ELDGVSGTLGSTESKTIKLAKDLAtveshlqdtqellQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEaakanfsrQMQ 1393
Cdd:pfam07888  326 ELQRLEERLQEERMEREKLEVELG-------------REKDCNRVQLSESRRELQELKASLRVAQKEKE--------QLQ 384
                          410
                   ....*....|....*
gi 1033370542 1394 SLQQQVMETKKKLEE 1408
Cdd:pfam07888  385 AEKQELLEYIRQLEQ 399
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
881-1690 9.08e-06

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 51.04  E-value: 9.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  881 QAKAVELQKVQEKHTKTQmdlKELENKYQQLSEEKTILAEQLQAEtELFAEAEEMRARLAARKQELEDILHELESRVEEE 960
Cdd:COG3096    306 QYRHVDMSRELAELNGAE---GDLEADYQAASDHLNLVQTALRQQ-EKIERYQADLEELTIRLEEQNEVVEEANERQEEN 381
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  961 EERCQQLQGDKKKMQQHVQDLEEQLEeeeaARQKLQLEKVSTEAKLKKMEEdLLVLEDQNSklhkerKLMEERLSEFTSH 1040
Cdd:COG3096    382 EARAEAAELEVDELKSQLADYQQALD----VQQTRAIQYQQAIAALERAKE-LCHLPDLTA------DSAEEWLETFQAK 450
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1041 MAEEEEKVKSLsklrnkyeavmadmEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAeLQQQLEELRQALARKEAELQA 1120
Cdd:COG3096    451 EEEATEKLLSL--------------EQKMSMAQAAHSQFEQAYQLVVAIAGELARSEA-WDVARELLREGPDQRHLAEQV 515
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1121 ALARVEdeaaqknavlksLRELQAQLAELQedmESEKLARAKAEKQRRDL-GEELEALKTELEDTLDSTAAQQ----ELR 1195
Cdd:COG3096    516 QPLRMR------------LSELEQRLRQQQ---SAERLLADFCKRQGKNLdAEELEALHQELEALIESLSDSVsnarEQR 580
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1196 SKREQEVTELKKTIEEEVKVHEAQVldmrqRHTSALEELSEQLEQSrrfkinLEKTKQALEGENAEMQKEvKLLQAAKLE 1275
Cdd:COG3096    581 MALRQEQEQLQSRIQSLMQRAPVWL-----AAQNALEQLSEQSGEE------FTDSQDVTEYMQQLLERE-REATVERDE 648
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1276 SEQRRKKLEGQVQELQLRAGEGERAKAELVERL--VKLQNELDGV--------SGTLGSteSKTIKLAKDLATVESHLQD 1345
Cdd:COG3096    649 LGARKNALDEEIERLSQPGGSEDQRLNALAERFggVLLSEIYDDVtiedapyfSALYGP--SRHAIVVPDLSQVKEHLEG 726
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1346 TQE-----LLQEETRQKLNLSSRVRQlEEEKAAMLEQLEEEEAA----------KANFSRQMQSLQQQ---VMETKKKLE 1407
Cdd:COG3096    727 LTDcpedlYLIEGDPQSFDDSVFSVD-ELEKAVVVKIADRQWRYsrfpeiplfgRAAREQRLESLHAErdvLSERHATLS 805
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1408 EDAGVAEAIEEARRRAAKdlESLSVRYE-ERVQACDKLEKGRTRLQQELDD-------VTVALDQQRQVVSALEKKQKKF 1479
Cdd:COG3096    806 FDVQKTQRLHQAFSRFIG--SHLAVAFEaDPEAEIRQLNSRRNELERALSNhendnqqQRIQFDQAKEGVTALNRLIPQL 883
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1480 DqMLAEEKLIsARYAEER---DRAEADAREKETKVLSLSR----------------ALEEALETREEMERQNKQLRAEMD 1540
Cdd:COG3096    884 N-LLADESLA-DRVEEIRerlDEAQEAARFIQQHGNTLSKlepiasvlqsdpeqfeQLKEDYAQAQQMQRQARQQAFALT 961
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1541 DLVSSK-----DDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQatedgklrlevNMQALKAQHERELQNRDDANDD 1615
Cdd:COG3096    962 EVVQRRahfsySDSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLR-----------QHQAQLSQYNQVLASLKSSYDT 1030
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542 1616 KKKLLSKQVRELEaELDAERKQRAQALAGRKKLELDlqeamAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEA 1690
Cdd:COG3096   1031 KKELLNELQQELQ-DIGVRADSGAEERARIRRDELH-----AQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKL 1099
PRK12704 PRK12704
phosphodiesterase; Provisional
994-1165 9.27e-06

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 50.55  E-value: 9.27e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  994 KLQLEKVSTEAKLKKMEedlLVLEdQNSKLHKERKLMEERLSEFTSHMAEEEEKVKslsklrnkyeavmaDMEDRLKKEE 1073
Cdd:PRK12704    41 KRILEEAKKEAEAIKKE---ALLE-AKEEIHKLRNEFEKELRERRNELQKLEKRLL--------------QKEENLDRKL 102
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1074 kgrQELEKLKRKLDgeagDLQEQVAELQQQLEELRQALARKEAELQAALARV----EDEAaqKNAVLKSLR-ELQAQLAE 1148
Cdd:PRK12704   103 ---ELLEKREEELE----KKEKELEQKQQELEKKEEELEELIEEQLQELERIsgltAEEA--KEILLEKVEeEARHEAAV 173
                          170
                   ....*....|....*..
gi 1033370542 1149 LQEDMESEklARAKAEK 1165
Cdd:PRK12704   174 LIKEIEEE--AKEEADK 188
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
933-1527 1.00e-05

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 50.59  E-value: 1.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  933 EEMRARLAARKQELEdilheLESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQlekvsteaklkkmeed 1012
Cdd:pfam10174  140 EEMELRIETQKQTLG-----ARDESIKKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLE---------------- 198
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1013 lLVLEDQNSKLHKERKLMEERLSeftshMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEkgrQELEKLKRKLDGEAGD 1092
Cdd:pfam10174  199 -VLLDQKEKENIHLREELHRRNQ-----LQPDPAKTKALQTVIEMKDTKISSLERNIRDLE---DEVQMLKTNGLLHTED 269
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1093 LQEQVAELQ----------QQLEELRQALARKEAELQAALARVE------DEAAQKNAVLK-SLRE-------LQAQLAE 1148
Cdd:pfam10174  270 REEEIKQMEvykshskfmkNKIDQLKQELSKKESELLALQTKLEtltnqnSDCKQHIEVLKeSLTAkeqraaiLQTEVDA 349
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1149 LQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDstaaqqeLRSKREQEVTELKKTIE---EEVKVHEAQVLDMRQ 1225
Cdd:pfam10174  350 LRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKD-------MLDVKERKINVLQKKIEnlqEQLRDKDKQLAGLKE 422
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1226 RHTS----------ALEELSEQLEQSRRFKINLEKTKQALEGENAEmqkevkllqaaklESEQRRKK---LEGQVQELQL 1292
Cdd:pfam10174  423 RVKSlqtdssntdtALTTLEEALSEKERIIERLKEQREREDRERLE-------------ELESLKKEnkdLKEKVSALQP 489
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1293 RAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQElLQEETRQKLNLSSRVRQLEEEKA 1372
Cdd:pfam10174  490 ELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHN-AEEAVRTNPEINDRIRLLEQEVA 568
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1373 amlEQLEEEEAAKANFSRQMQSLQQQVMEtkkKLEEDAGVAEaIEEARRRAAKDLESL-----SVRYEERVQACDKLEKG 1447
Cdd:pfam10174  569 ---RYKEESGKAQAEVERLLGILREVENE---KNDKDKKIAE-LESLTLRQMKEQNKKvanikHGQQEMKKKGAQLLEEA 641
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1448 RTR--------LQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERdraeadareketkvlslSRALE 1519
Cdd:pfam10174  642 RRRednladnsQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAER-----------------RKQLE 704

                   ....*...
gi 1033370542 1520 EALETREE 1527
Cdd:pfam10174  705 EILEMKQE 712
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
910-1284 1.05e-05

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 50.27  E-value: 1.05e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  910 QLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHELESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEE 989
Cdd:pfam07888   35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEELEEKYKELSRSGEELA 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  990 AARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLsklrnkyEAVMADMEDRL 1069
Cdd:pfam07888  115 EEKDALLAQRAESEARIRELEEDIKTLTQRVLERETELERMKERVKKAGAQRKEEEAERKQL-------QAKLQQTEEEL 187
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1070 KKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQ--AALARVEDEAAQKNAVLKS-LRELQAQL 1146
Cdd:pfam07888  188 RSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEelRSLQERLNASERKVEGLGEeLSSMAAQR 267
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1147 AELQEDMESEKLARAKAEKQRRDLGEELEALKT----ELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLD 1222
Cdd:pfam07888  268 DRTQAELHQARLQAAQLTLQLADASLALREGRArwaqERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVE 347
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1033370542 1223 MRQRHTSALEELSEQLEQSRRFKINLEKTkqalegenaemQKEVKLLQAAKLESEQRRKKLE 1284
Cdd:pfam07888  348 LGREKDCNRVQLSESRRELQELKASLRVA-----------QKEKEQLQAEKQELLEYIRQLE 398
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
1175-1542 1.31e-05

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 49.89  E-value: 1.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1175 EALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRhtsaLEELSEQLEQSRRFKINLEKTKQA 1254
Cdd:pfam07888   30 ELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESR----VAELKEELRQSREKVEELEEKYKE 105
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1255 LEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAK 1334
Cdd:pfam07888  106 LSRSGEELAEEKDALLAQRAESEARIRELEEDIKTLTQRVLERETELERMKERVKKAGAQRKEEEAERKQLQAKLQQTEE 185
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1335 DLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKAnfsrQMQSLQQQVMETKKKLEEDAGVAE 1414
Cdd:pfam07888  186 ELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLE----ELRSLQERLNASERKVEGLGEELS 261
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1415 AIEEARRRAAKDLESLSVRYEER----VQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLis 1490
Cdd:pfam07888  262 SMAAQRDRTQAELHQARLQAAQLtlqlADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERM-- 339
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1491 aryaeERDRAEAD-AREKETKVLSLSRALEEALETREEM---ERQNKQLRAEMDDL 1542
Cdd:pfam07888  340 -----EREKLEVElGREKDCNRVQLSESRRELQELKASLrvaQKEKEQLQAEKQEL 390
AAA_13 pfam13166
AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA ...
1116-1291 1.63e-05

AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.


Pssm-ID: 433006 [Multi-domain]  Cd Length: 712  Bit Score: 50.06  E-value: 1.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1116 AELQAALARVEDEA--AQKNA-------VLKSLRELQAQLAELQED---MESEKLARAKAEKQRRDLGEELEALKTELED 1183
Cdd:pfam13166  267 AERKAALEAHFDDEftEFQRRlqkliekYESAISSLLAQLPAVSDLaslLSAFELDVEDLKAEAEVLNSQLDGLRQALEA 346
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1184 TLDSTAAQQELRSKRE--QEVTELKKTIEEEVKVHEAQVLDmrqrHTSALEELSEQLEQSR--RFKINLEKTKQALEGEN 1259
Cdd:pfam13166  347 KRKEPFKSIELDSVDAkiESIKDLVAAINELIAKHNEITDN----LEEEKNKAKKKLWLFLveEFKAEIDEYKDAYAGLE 422
                          170       180       190
                   ....*....|....*....|....*....|..
gi 1033370542 1260 aemqKEVKLLQAAKLESEQRRKKLEGQVQELQ 1291
Cdd:pfam13166  423 ----KAINSLTKEIKNATAEIKKLRAEIRELE 450
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
683-707 1.79e-05

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 46.95  E-value: 1.79e-05
                           10        20
                   ....*....|....*....|....*
gi 1033370542  683 YKESLSKLMSTLRNTNPNFVRCIIP 707
Cdd:cd01363    146 INESLNTLMNVLRATRPHFVRCISP 170
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
1016-1836 2.05e-05

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 50.05  E-value: 2.05e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1016 LEDQNSKLHKERKLmeerLSEFTSHMAEEEEKVKSLSKLrNKYEAVMADMEDRLkkeEKGRQELEKLKRKLDGEAGDLQE 1095
Cdd:TIGR01612  885 LNDYEKKFNDSKSL----INEINKSIEEEYQNINTLKKV-DEYIKICENTKESI---EKFHNKQNILKEILNKNIDTIKE 956
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1096 QVAELQQQLEELRQALARKEAELQAAL--ARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLAraKAEKQRRDLGEE 1173
Cdd:TIGR01612  957 SNLIEKSYKDKFDNTLIDKINELDKAFkdASLNDYEAKNNELIKYFNDLKANLGKNKENMLYHQFD--EKEKATNDIEQK 1034
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1174 LEALKTELEDTldstaaQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQL----------EQSRR 1243
Cdd:TIGR01612 1035 IEDANKNIPNI------EIAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEKLkhynfddfgkEENIK 1108
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1244 FKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAG---------EGERAKAELVERLVKLQNE 1314
Cdd:TIGR01612 1109 YADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADkaisnddpeEIEKKIENIVTKIDKKKNI 1188
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1315 LDGVSGTLgsteSKTIKLAKDLATVE-------SHLQDTQELLQEetrqklnlssrvrQLEEEKaamleqleeeeAAKAN 1387
Cdd:TIGR01612 1189 YDEIKKLL----NEIAEIEKDKTSLEevkginlSYGKNLGKLFLE-------------KIDEEK-----------KKSEH 1240
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1388 FSRQMQSLQQQVMETKKKLEEdagvAEAIEEARRRAAKDLESLSVRYeervqacDKLEKGRTRLQQelddvtvaldqQRQ 1467
Cdd:TIGR01612 1241 MIKAMEAYIEDLDEIKEKSPE----IENEMGIEMDIKAEMETFNISH-------DDDKDHHIISKK-----------HDE 1298
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1468 VVSALEKKQKKFDQMLAEEKLIS------ARYAEERDRAEADAREKETKVLSL---------SRALEEALETREEMERQN 1532
Cdd:TIGR01612 1299 NISDIREKSLKIIEDFSEESDINdikkelQKNLLDAQKHNSDINLYLNEIANIynilklnkiKKIIDEVKEYTKEIEENN 1378
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1533 KQLRAEMDDlvsskddvgknvhelerfKRALEQQVQEmRAQMEELEDELQATEDGKLRLEV--NMQALKAQHERELQNRD 1610
Cdd:TIGR01612 1379 KNIKDELDK------------------SEKLIKKIKD-DINLEECKSKIESTLDDKDIDECikKIKELKNHILSEESNID 1439
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1611 ------DANDDKKKLLSKQVREleAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQmKELW 1684
Cdd:TIGR01612 1440 tyfknaDENNENVLLLFKNIEM--ADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKN-KELF 1516
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1685 RE-------------------------------VEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQA- 1732
Cdd:TIGR01612 1517 EQykkdvtellnkysalaiknkfaktkkdseiiIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAi 1596
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1733 --QQERDDLADEL---ANGNSGKSALLDEKRHLEARIGQLEeeldeeqsnmelLNDRYRKLSMQVETLTTelgaERSFSQ 1807
Cdd:TIGR01612 1597 diQLSLENFENKFlkiSDIKKKINDCLKETESIEKKISSFS------------IDSQDTELKENGDNLNS----LQEFLE 1660
                          890       900
                   ....*....|....*....|....*....
gi 1033370542 1808 KTENARQQLERQNKDlrakLGEMDSSVKS 1836
Cdd:TIGR01612 1661 SLKDQKKNIEDKKKE----LDELDSEIEK 1685
PLN03188 PLN03188
kinesin-12 family protein; Provisional
1026-1242 2.12e-05

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 49.93  E-value: 2.12e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1026 ERKLMEERLseftsHMAEEEEKVKSLS-KLRNKYEAVMADMEDR---LKKEEKGRQEL-EKLKRKLDGEAGDLqEQVAEL 1100
Cdd:PLN03188  1046 EKKLEQERL-----RWTEAESKWISLAeELRTELDASRALAEKQkheLDTEKRCAEELkEAMQMAMEGHARML-EQYADL 1119
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1101 QqqlEELRQALARKEaELQAALARVEDEAAQ---KNAVLKSLRELQAQLAELqedmeseklaRAKAEKQRRDLGEELEAL 1177
Cdd:PLN03188  1120 E---EKHIQLLARHR-RIQEGIDDVKKAAARagvRGAESKFINALAAEISAL----------KVEREKERRYLRDENKSL 1185
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542 1178 KTELEDTLDSTAAQQEL--RSKREQE--VTELKKTIEEEVKVHEA--QVLDMRQRHTSALEELSEQLEQSR 1242
Cdd:PLN03188  1186 QAQLRDTAEAVQAAGELlvRLKEAEEalTVAQKRAMDAEQEAAEAykQIDKLKRKHENEISTLNQLVAESR 1256
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1612-1879 2.15e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 48.95  E-value: 2.15e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1612 ANDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELwrEVEEaR 1691
Cdd:COG4942     35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL--EVQE-R 111
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1692 AAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAK---RQAQQERDDLADELANgnsGKSALLDEKRHLEARigqle 1768
Cdd:COG4942    112 EQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAiyyGALNPARAERIDALKA---TLKQLAAVRAEIAAE----- 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1769 eeldeeqsnmellndryrklSMQVETLTTELGAERSFSQKTENARQQLERQ-NKDLRAklgemDSSVKSKYKMAIATLES 1847
Cdd:COG4942    184 --------------------QAELTTLLSEQRAQQAKLAQLLEERKKTLAQlNSELSA-----DQKKLEELRANESRLKN 238
                          250       260       270
                   ....*....|....*....|....*....|..
gi 1033370542 1848 KVAQLEEQLEQESRERILSGKLVRRAEKKLKE 1879
Cdd:COG4942    239 EIASAEAAAAKAREAAAAAEAAAARARAAEAK 270
Rabaptin pfam03528
Rabaptin;
1092-1371 2.30e-05

Rabaptin;


Pssm-ID: 367545 [Multi-domain]  Cd Length: 486  Bit Score: 49.33  E-value: 2.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1092 DLQEQVAELQQQLEELRQALARKEAELQAALARV-------EDEAAQKNAVLKSLRE----LQAQLAELQEDME------ 1154
Cdd:pfam03528    5 DLQQRVAELEKENAEFYRLKQQLEAEFNQKRAKFkelylakEEDLKRQNAVLQEAQVeldaLQNQLALARAEMEnikava 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1155 --SEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQ-EVTELKKTIEEEVKvheaqvlDMRQRHTSAL 1231
Cdd:pfam03528   85 tvSENTKQEAIDEVKSQWQEEVASLQAIMKETVREYEVQFHRRLEQERaQWNQYRESAEREIA-------DLRRRLSEGQ 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1232 EE---------LSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQ-ELQLRAGEGERAK 1301
Cdd:pfam03528  158 EEenledemkkAQEDAEKLRSVVMPMEKEIAALKAKLTEAEDKIKELEASKMKELNHYLEAEKSCRtDLEMYVAVLNTQK 237
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1033370542 1302 AELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELL-QEETRQKLNLSS-RVRQLEEEK 1371
Cdd:pfam03528  238 SVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLmRDMQRMESVLTSeQLRQVEEIK 309
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
1093-1864 2.44e-05

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 49.44  E-value: 2.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1093 LQEQVAELQQQLEELRQALARKEAELQAALARVED---EAAQKNAVLKslRELQAQLAELQEdmeseklarakaekQRRD 1169
Cdd:pfam10174    1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTfwsPELKKERALR--KEEAARISVLKE--------------QYRV 64
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1170 LGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHtSALEELSEQLEQSRR----FK 1245
Cdd:pfam10174   65 TQEENQHLQLTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQ-SEHERQAKELFLLRKtleeME 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1246 INLEKTKQALEGENAEMQKEVKLLQAAKLEseqrrKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGST 1325
Cdd:pfam10174  144 LRIETQKQTLGARDESIKKLLEMLQSKGLP-----KKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRR 218
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1326 ESKTIKLAKDLATveshlqdtQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKK 1405
Cdd:pfam10174  219 NQLQPDPAKTKAL--------QTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNK 290
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1406 LEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTR-------LQQELDDVTVALDQQRQVvsaLEKKQKK 1478
Cdd:pfam10174  291 IDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAkeqraaiLQTEVDALRLRLEEKESF---LNKKTKQ 367
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1479 FDQMLAEEKLISARYAEERDRAEAdareKETKVLSLSRALEEALETREEMERQNKQLR-----------------AEMDD 1541
Cdd:pfam10174  368 LQDLTEEKSTLAGEIRDLKDMLDV----KERKINVLQKKIENLQEQLRDKDKQLAGLKervkslqtdssntdtalTTLEE 443
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1542 LVSSKDDVGKNV-HELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKaQHERELQNRDDANDDKKKLL 1620
Cdd:pfam10174  444 ALSEKERIIERLkEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLK-EHASSLASSGLKKDSKLKSL 522
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1621 S----KQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKgRDEAGKQlrklQAqmkelwrEVEEARAAREE 1696
Cdd:pfam10174  523 EiaveQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARY-KEESGKA----QA-------EVERLLGILRE 590
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1697 IFIQSRESEKKLKNLEA-ELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEarigQLEEELDEEQ 1775
Cdd:pfam10174  591 VENEKNDKDKKIAELESlTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQ----LEELMGALEK 666
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1776 SNMELLNDRYRKLSMQV-----ETLTTELGAERsfsqktenaRQQLER-------------QNKDLRAKLGEMDSSVKSK 1837
Cdd:pfam10174  667 TRQELDATKARLSSTQQslaekDGHLTNLRAER---------RKQLEEilemkqeallaaiSEKDANIALLELSSSKKKK 737
                          810       820
                   ....*....|....*....|....*..
gi 1033370542 1838 YKMAIATLESKVAQLEEQLEQESRERI 1864
Cdd:pfam10174  738 TQEEVMALKREKDRLVHQLKQQTQNRM 764
GumC COG3206
Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane ...
997-1291 2.53e-05

Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225747 [Multi-domain]  Cd Length: 458  Bit Score: 48.98  E-value: 2.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  997 LEKVSTEAKLKKM-EEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRlkkeeKG 1075
Cdd:COG3206     95 LEKVIDKLKLDDDpEFVGKPLIASFLRLLKDLIGPDPTIFEISYRLDDLLESLKVLRAGRSRVIELSYTSNDP-----KL 169
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1076 RQELEK------LKRKLDGEAGDLQEQVAELQQQLEELRQALarKEAELQAALARVE----DEAAQKNAVLKSLRELQAQ 1145
Cdd:COG3206    170 AAKLANalaqayLADQLEAQLEAFRRASDSLDERLEELRARL--QEAEAQVEDFRAQhgltDAARGQLLSEQQLSALNTQ 247
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1146 LAELQEdMESEKLARAKAEKQRRDLGEELEALKTELEDtldstAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQ 1225
Cdd:COG3206    248 LQSARA-RLAQAEARLASLLQLLPLGREAAALREVLES-----PTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQ 321
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1033370542 1226 rhtsaLEELSEQLEQ-SRRFKINLEKTKQALEGENAEMQKEVK-----LLQAAKLESEQRRkkLEGQVQELQ 1291
Cdd:COG3206    322 -----LAELRQQIAAeLRQILASLPNELALLEQQEAALEKELAqlkgrLSKLPKLQVQLRE--LEREAEAAR 386
COG5283 COG5283
Phage-related tail protein [Mobilome: prophages, transposons];
1015-1358 2.68e-05

Phage-related tail protein [Mobilome: prophages, transposons];


Pssm-ID: 227608 [Multi-domain]  Cd Length: 1213  Bit Score: 49.54  E-value: 2.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1015 VLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQ 1094
Cdd:COG5283     26 VLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAE 105
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1095 EQVAELQQQLEELRQALARKEAELQaalarveDEAAQKNAVLKSLRElQAQLAELQEDMESEklARAKAEKQRRDLGEEL 1174
Cdd:COG5283    106 NKLRSLSGQFGVASEQLMLQQKEIQ-------RLQYAISTLNKSMAA-QARLLEQTGNKFGT--ADAKVVGLRESFGRQT 175
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1175 EALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQV----------LDMRQRHTSALEELSEQLEQSR-R 1243
Cdd:COG5283    176 EALNKQLERTKKVADALTYVLDEAQQKLSQALSARLERLQESRTQMsqssgqlgkrLETDKAGAGALGLLGAALAGSFaA 255
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1244 FKINLEKTKQaLEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQEL--QLRAGEGERAKAELVERLVKLqneldGVSGT 1321
Cdd:COG5283    256 IGAAVRRTAQ-MNGELMDKTKQVKGARDNLGKVTSQGEEMSDAIQETaeHIKDSGRELSKAAAIGAAAAM-----GVAAG 329
                          330       340       350
                   ....*....|....*....|....*....|....*..
gi 1033370542 1322 LGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKL 1358
Cdd:COG5283    330 KFPTGQEAKPTLKEMARVAALTATAFNLPADELNDNL 366
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
1386-1977 2.82e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 49.45  E-value: 2.82e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1386 ANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEervqacDKLEKGRTRLQQELDDVTVALDQQ 1465
Cdd:pfam12128  247 QQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLD------DQWKEKRDELNGELSAADAAVAKD 320
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1466 RQVVSALEKKQKKFDQMLAEeklisaRYAEERDRAEADAREKEtkvlSLSRALEEALETREEMERQNKQLRAEMDDlvSS 1545
Cdd:pfam12128  321 RSELEALEDQHGAFLDADIE------TAAADQEQLPSWQSELE----NLEERLKALTGKHQDVTAKYNRRRSKIKE--QN 388
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1546 KDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRlEVNMQALK-AQHERELQNRDDANDDKKKLLSkQV 1624
Cdd:pfam12128  389 NRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKL-EFNEEEYRlKSRLGELKLRLNQATATPELLL-QL 466
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1625 RELEAELDAERKQRAQALAGRkkleLDLQEAMAQLDAAnkgRDEAGKQLRKLQAQMKELWREVEEARaarEEIFIQSRES 1704
Cdd:pfam12128  467 ENFDERIERAREEQEAANAEV----ERLQSELRQARKR---RDQASEALRQASRRLEERQSALDELE---LQLFPQAGTL 536
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1705 EKKLKNLEAELLQLQEDLAASErakrqaQQERDDLADELaNGNSGKSAL------LDEKR-----------HLEARIGQL 1767
Cdd:pfam12128  537 LHFLRKEAPDWEQSIGKVISPE------LLHRTDLDPEV-WDGSVGGELnlygvkLDLKRidvpewaaseeELRERLDKA 609
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1768 EEELDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSSVKSKYKMAIATLES 1847
Cdd:pfam12128  610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEA 689
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1848 KVAQLEEQLEQESrERILSGKLVRRAEK--KLKEVILQVDEERRNADQYKDQVEKGH-LRLKQLKRQLEEAEEEASRANA 1924
Cdd:pfam12128  690 QLKQLDKKHQAWL-EEQKEQKREARTEKqaYWQVVEGALDAQLALLKAAIAARRSGAkAELKALETWYKRDLASLGVDPD 768
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1925 SRRRMQRELEDVTESAESMNR---EVTSLRNRLSK--VERRQRKRTPLSFTTRTVRQV 1977
Cdd:pfam12128  769 VIAKLKREIRTLERKIERIAVrrqEVLRYFDWYQEtwLQRRPRLATQLSNIERAISEL 826
ADIP pfam11559
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at ...
1513-1610 3.08e-05

Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.


Pssm-ID: 431934 [Multi-domain]  Cd Length: 151  Bit Score: 46.16  E-value: 3.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1513 SLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLE 1592
Cdd:pfam11559   42 ELLQQRDRDLEFRESLNETIRTLEAEIERLQSKIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEELQRLK 121
                           90
                   ....*....|....*...
gi 1033370542 1593 VNMQALKAQHERELQNRD 1610
Cdd:pfam11559  122 NALQQIKTQFAHEVKKRD 139
HlyD pfam00529
HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin ...
1092-1235 3.60e-05

HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD and HlyB are inner-membrane proteins and specific components of the transport apparatus of alpha-haemolysin. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 48.19  E-value: 3.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1092 DLQEQVAELQQQLEELRQALARKEAELQAA----------LARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARA 1161
Cdd:pfam00529   55 DYQAALDSAEAQLAKAQAQVARLQAELDRLqaleselaisRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRVLAP 134
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542 1162 KAEKQRRDLgEELEALKTELEDTLDSTAAQQE-LRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELS 1235
Cdd:pfam00529  135 IGGISRESL-VTAGALVAQAQANLLATVAQLDqIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLE 208
CAGE1 pfam15066
Cancer-associated gene protein 1 family; CAGE-1 is a family of proteins overexpressed in tumor ...
1006-1237 4.58e-05

Cancer-associated gene protein 1 family; CAGE-1 is a family of proteins overexpressed in tumor tissues compared with surrounding tissues. CAGE-1 gene showed testis-specific expression among normal tissues and displayed wide expression in a variety of cancer cell lines and cancer tissues. CAGE-1 is predominantly expressed during post-meiotic stages. It localizes to the acrosomal matrix and acrosomal granule showing it to be a component of the acrosome of mammalian spermatids and spermatozoa.


Pssm-ID: 434432  Cd Length: 528  Bit Score: 48.30  E-value: 4.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1006 LKKMEEDLLVLEDQNSKLHKERKlMEERLSEFTSHMAEEEEKVKSLSKLRNKYEaVMADMEDRLKK------EEKGRQEL 1079
Cdd:pfam15066  307 LQPLEEDMALNEVLQKLKHTNRK-QQMQIQDLQCSNLYLEKKVKELQMKITKQQ-VFVDIINKLKEnveeliEDKYNVIL 384
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1080 EK--LKRKLDgeagDLQEQVAELQQQLEElrqalARKEAE-LQAALARVedeaaQKNAVL---KSLRELQAQLAELQEDM 1153
Cdd:pfam15066  385 EKndINKTLQ----NLQEILANTQKHLQE-----SRKEKEtLQLELKKI-----KVNYVHlqeRYITEMQQKNKSVSQCL 450
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1154 ESEKLARAKAEKQRRdlgeeLEALKTELEDTldSTAAQQELrsKREQEVTELK-KTIEEEVKVHEAQVLDMRQRHTSALE 1232
Cdd:pfam15066  451 EMDKTLSKKEEEVER-----LQQLKGELEKA--TTSALDLL--KREKETREQEfLSLQEEFQKHEKENLEERQKLKSRLE 521

                   ....*
gi 1033370542 1233 ELSEQ 1237
Cdd:pfam15066  522 KLVAQ 526
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
1042-1282 4.61e-05

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 48.41  E-value: 4.61e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1042 AEEEEKVKS-LSKLRnkYEAVMAdmedRLKKEEKGRQEleKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQA 1120
Cdd:PRK05035   440 AIEQEKKKAeEAKAR--FEARQA----RLEREKAAREA--RHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAG 511
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1121 ALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEK-----LARAKAEKQrrdlgeELEALKTELEDTLDSTAAQQELR 1195
Cdd:PRK05035   512 ARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAavaaaIARAKAKKA------AQQAANAEAEEEVDPKKAAVAAA 585
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1196 SKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALE-----ELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQ 1270
Cdd:PRK05035   586 IARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIArakakKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQA 665
                          250
                   ....*....|..
gi 1033370542 1271 AAKLESEQRRKK 1282
Cdd:PRK05035   666 NAEPEEAEDPKK 677
PRK09039 PRK09039
peptidoglycan -binding protein;
1076-1242 4.98e-05

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 47.65  E-value: 4.98e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1076 RQELEKLKRKLDgeagDLQEQVAELQQQL-------EELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAE 1148
Cdd:PRK09039    45 SREISGKDSALD----RLNSQIAELADLLslerqgnQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGE 120
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1149 LQEDMESEKLARAKAEKQRRDLGEELEALKTEL---EDTLDSTaaqqelrskreqevtelkktiEEEVKVHEAQVLDMRQ 1225
Cdd:PRK09039   121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLaalEAALDAS---------------------EKRDRESQAKIADLGR 179
                          170
                   ....*....|....*..
gi 1033370542 1226 RHTSALEELSEQLEQSR 1242
Cdd:PRK09039   180 RLNVALAQRVQELNRYR 196
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
1481-1827 5.18e-05

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteristic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 47.75  E-value: 5.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1481 QMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFK 1560
Cdd:pfam19220   55 ALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLAAETEQN 134
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1561 RALEQQVQEMRAQMEELEDELQATEdGKLRLEVNMQALKAQHERELQNRDDANDDKKKLLSKQVRELEAELDAERK---- 1636
Cdd:pfam19220  135 RALEEENKALREEAQAAEKALQRAE-GELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRArlra 213
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1637 ---QRAQALAGRKKLELDLQEAMAQ-----------LDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSR 1702
Cdd:pfam19220  214 legQLAAEQAERERAEAQLEEAVEAhraeraslrmkLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERD 293
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1703 ESEKKLKNLEAELLQLQEDLAASERAkRQAQQERddlADELANGNSGKSALLDEKrhlearigqleeeldeeqsnmellN 1782
Cdd:pfam19220  294 TLERRLAGLEADLERRTQQFQEMQRA-RAELEER---AEMLTKALAAKDAALERA------------------------E 345
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1033370542 1783 DRYRKLSMQVETLTtelgaersfsQKTENARQQLERQNKDLRAKL 1827
Cdd:pfam19220  346 ERIASLSDRIAELT----------KRFEVERAALEQANRRLKEEL 380
HOOK pfam05622
HOOK protein; This family consists of several HOOK1, 2 and 3 proteins from different ...
1092-1530 5.76e-05

HOOK protein; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head.


Pssm-ID: 428548 [Multi-domain]  Cd Length: 526  Bit Score: 48.13  E-value: 5.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1092 DLQEQVAELQQQ---LEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLA----RAKAE 1164
Cdd:pfam05622   11 ELAQRCHELDQQvslLQEEKNSLQAENKKLQERLNQLESFDESGTPTSKKYSLLQKQLEQLQEENFRLETArddyRIKCE 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1165 KQRRDLGE------ELEALKTE---LEDTLDSTAAQQELRSKREQEVTELKKTIEE------EVKVHEAQVLDMRQRHTs 1229
Cdd:pfam05622   91 ELEKEVLElqhrneELTSLAEEaqaLKDEIDILRESSDKVSKLEATVETYKKKLEDlgdlrrQVKLLEERNAVYMQNTV- 169
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1230 aleELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKllQAAKLESEQrrKKLEGQVQELQlraGEGERAKAE---LVE 1306
Cdd:pfam05622  170 ---SLEEELKKANALRGQLELYKRQVQELHGKLSEESK--KADKLEFEY--KKLEEKLEALQ---KEKERLIIErdtLRE 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1307 -----RLVKLQNELDGVSGTLGSTESKTIKLAKDLATVEshLQDTQELLQEEtrQKLNLSSRVRQLEEEKAAMLEQLEEE 1381
Cdd:pfam05622  240 tneelRCAQLQQDELSQADALGSPSSSVDNLAAEILPAE--IREKLIRLQHE--NKMLRLQQEGSEREKLTELQALLEDA 315
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1382 EAAKANFSRQMQSLQQQVMETKKKLEEdagVAEAIEEARRRAaKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVA 1461
Cdd:pfam05622  316 NRRKNELETQNRLANQRILELQQQVEE---LQKALQEQGSKA-EDSSLLKQKLEEHLEKLHEAQEELQKKKEQLEELEPK 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1462 LDQQRQVVSALEKK-QKKFDQMLAEE-------------------KLISARYAEERDRaEADAREKETKVLSLSRALEEA 1521
Cdd:pfam05622  392 VDSNLQKIDELQEAlRKKDEDMKAMEerykkyvekaksviktldpKQNPASPPEIQAL-RNQLLEKDKKIEHLERDYEKS 470

                   ....*....
gi 1033370542 1522 LETREEMER 1530
Cdd:pfam05622  471 KLQREQEEK 479
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
872-1257 5.84e-05

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 48.19  E-value: 5.84e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  872 QVTRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETEL----------FAEAEEMRARLaA 941
Cdd:pfam05557  119 QIQRQELELSSTNSELEELQERLDLQKAKAQEAEQLRQNLEAQQSSLAEAEQRIKELefeiqsqeqdSEIVKNSKSEL-A 197
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  942 RKQELEDILheleSRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQK---LQLEKVSTEAKLKKMEE------- 1011
Cdd:pfam05557  198 RIPELEREL----ERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEGYREElatLELEKEKLEQELKSWEKlaqdtgl 273
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1012 DLLVLEDQNSK---LHKERKLMEERLSEFTSHMAEEEekvKSLSKLRNKYEAVMADMEDrlkkEEKGRQELEKLKRKldg 1088
Cdd:pfam05557  274 NLRSPEDLSRRieqLQQREITLKEENSSLTSSARQLE---KAQRELEQELAQYLKNIED----LNKKLKRHKALVRR--- 343
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1089 eagdLQEQVAELQQQLEELRQALARKEAELQAA------LARVEDEAAQKNAVLKSLRELQAQLAELQE----------- 1151
Cdd:pfam05557  344 ----LQRRVLLLTKERDGMRAILESYDKELTPSnyspqlLERIEEAEDMTQDMQAHNEEMEAQLSVAEEelggykqqatt 419
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1152 -DMESEKLARAKAEKQRRDLGEELEALKTELEDTLdstAAQQELR-SKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTS 1229
Cdd:pfam05557  420 lERELQALRQQESLADPSYSKEEVDSLRRKLETLE---AERQRLReQKNELEMELERRCLQGDYDPKKTKVLHLSMNPAA 496
                          410       420       430
                   ....*....|....*....|....*....|...
gi 1033370542 1230 ALEELS-EQLEQSR----RFKINLEKTKQALEG 1257
Cdd:pfam05557  497 EAYQQRaNDLEKLQaeieRLKRRLKKLEDDLEQ 529
PRK09039 PRK09039
peptidoglycan -binding protein;
1564-1703 6.04e-05

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 47.27  E-value: 6.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1564 EQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKA-----QHERE-LQNRDDANDDKKKLLSKQVRELEAELDAERKQ 1637
Cdd:PRK09039    52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRAslsaaEAERSrLQALLAELAGAGAAAEGRAGELAQELDSEKQV 131
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542 1638 RAQALAgrkKLEL----------DLQEAMAQLDAANKGRDEAGKQLRKLQAQMK-ELWREVEEARAAREEIFIQSRE 1703
Cdd:PRK09039   132 SARALA---QVELlnqqiaalrrQLAALEAALDASEKRDRESQAKIADLGRRLNvALAQRVQELNRYRSEFFGRLRE 205
PRK12704 PRK12704
phosphodiesterase; Provisional
1106-1283 6.25e-05

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 47.85  E-value: 6.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1106 ELRQALARKEAELQAALARVEDEAAQKNAVLkslrELQAQLAELQEDMESEKLAR----AKAEKQRRDLGEELEALKTEL 1181
Cdd:PRK12704    30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALL----EAKEEIHKLRNEFEKELRERrnelQKLEKRLLQKEENLDRKLELL 105
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1182 EDTLDSTAAQQELRSKREQEVTELKKTIEEevkvheaqvldMRQRHTSALEELSE-QLEQSRrfKINLEKTKQALEGENA 1260
Cdd:PRK12704   106 EKREEELEKKEKELEQKQQELEKKEEELEE-----------LIEEQLQELERISGlTAEEAK--EILLEKVEEEARHEAA 172
                          170       180
                   ....*....|....*....|...
gi 1033370542 1261 EMQKEVKllQAAKLESEQRRKKL 1283
Cdd:PRK12704   173 VLIKEIE--EEAKEEADKKAKEI 193
HMMR_N pfam15905
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ...
1071-1335 8.04e-05

Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


Pssm-ID: 435008 [Multi-domain]  Cd Length: 329  Bit Score: 47.12  E-value: 8.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1071 KEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEelrqalaRKEAELQAALarvedeaAQKNAVLKSLRELQAQLAELQ 1150
Cdd:pfam15905   70 KESKDQKELEKEIRALVQERGEQDKRLQALEEELE-------KVEAKLNAAV-------REKTSLSASVASLEKQLLELT 135
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1151 EDME--SEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRH- 1227
Cdd:pfam15905  136 RVNEllKAKFSEDGTQKKMSSLSMELMKLRNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKi 215
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1228 ---------TSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGE 1298
Cdd:pfam15905  216 eekseteklLEYITELSCVSEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELL 295
                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 1033370542 1299 RAKAELVERLVKlqnELDGVSGTLGSTESKTIKLAKD 1335
Cdd:pfam15905  296 REYEEKEQTLNA---ELEELKEKLTLEEQEHQKLQQK 329
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1346-1964 9.57e-05

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 47.73  E-value: 9.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1346 TQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAK 1425
Cdd:TIGR00606  204 EHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEK 283
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1426 DLESLSVRYEERVQACDK----LEKGRTRLQQELDDVTValDQQRQVvSALEKKQKKFDQMLAEEKLISARYAEERDRAE 1501
Cdd:TIGR00606  284 DNSELELKMEKVFQGTDEqlndLYHNHQRTVREKERELV--DCQREL-EKLNKERRLLNQEKTELLVEQGRLQLQADRHQ 360
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1502 ADAREKETKVLSLSRALE-EALETREEMERQNKQLRAEMDDLVSSKDD-VGKNVHELERFKRALEQQVQEMRAQMEELED 1579
Cdd:TIGR00606  361 EHIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQEDEAKtAAQLCADLQSKERLKQEQADEIRDEKKGLGR 440
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1580 ELQateDGKLRLEVNMQALKAQhERELQNRDDANDDkkkLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQL 1659
Cdd:TIGR00606  441 TIE---LKKEILEKKQEELKFV-IKELQQLEGSSDR---ILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADL 513
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1660 DAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAEL---LQLQEDLAASERAKRQAQQER 1736
Cdd:TIGR00606  514 DRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFpnkKQLEDWLHSKSKEINQTRDRL 593
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1737 DDLADELANGNSGKSALLDEKRHLEARIGQLEEE------LDEEQSNMELLNDRYRKLSMQVETLTTELGAERSFSQKTE 1810
Cdd:TIGR00606  594 AKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLT 673
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1811 NARQQ---LERQNKDLRAKLGEMDSSVKSKYKMA---IATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQV 1884
Cdd:TIGR00606  674 DENQSccpVCQRVFQTEAELQEFISDLQSKLRLApdkLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKL 753
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1885 DEERRNADQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASRRrMQRELEDVTESAESMNREVTSLRNRLSKVERRQRKR 1964
Cdd:TIGR00606  754 QKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMER-FQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQ 832
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
1022-1238 9.81e-05

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 45.82  E-value: 9.81e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1022 KLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEkgrqeleklkrkldgeagDLQEQVAELQ 1101
Cdd:COG1579      4 NNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELE------------------DLENQVSQLE 65
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1102 QQLEELRQALARKEAELQAAlarvedeaaqknavlKSLRELQAqlaeLQEDMESEKLARAKAEKQRRDLGEELEALKTEL 1181
Cdd:COG1579     66 SEIQEIRERIKRAEEKLSAV---------------KDERELRA----LNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542 1182 EDTLDSTAAQqelrskrEQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQL 1238
Cdd:COG1579    127 EDLKERLERL-------EKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPEL 176
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
997-1208 1.19e-04

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 47.23  E-value: 1.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  997 LEKVSTEAKLKKMEEDLLVLEDQNSKLhkerklmEERLSEFTSHMAEEEEKVKSLSKLRNkyeavmADMEDRLKKEEKGr 1076
Cdd:PRK05771    79 VSVKSLEELIKDVEEELEKIEKEIKEL-------EEEISELENEIKELEQEIERLEPWGN------FDLDLSLLLGFKY- 144
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1077 qeleklkrkLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARV-EDEAAQKnaVLKSLRELQAQLAELQEDMES 1155
Cdd:PRK05771   145 ---------VSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVvLKELSDE--VEEELKKLGFERLELEEEGTP 213
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542 1156 EKLARAKAE------KQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKT 1208
Cdd:PRK05771   214 SELIREIKEeleeieKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKT 272
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
1200-1634 1.34e-04

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 46.90  E-value: 1.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1200 QEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQaaklESEQR 1279
Cdd:COG5185    214 QPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLY----EKIQE 289
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1280 RKKLEGQVQELqlragegERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLN 1359
Cdd:COG5185    290 AMKISQKIKTL-------REKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1360 LSSRVRQLEEEKAamleqleeeeaAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQ 1439
Cdd:COG5185    363 QGISTEQFELMNQ-----------EREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRS 431
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1440 ACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKV----LSLS 1515
Cdd:COG5185    432 QIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILekleLELS 511
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1516 RALEEALETREEMERQNKQLRAEMDDLvsskddvgknvhelerfKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNM 1595
Cdd:COG5185    512 EANSKFELSKEENERELVAQRIEIEKL-----------------EKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDL 574
                          410       420       430
                   ....*....|....*....|....*....|....*....
gi 1033370542 1596 QALKAQHERELQNRDDANDDKKKLLSKQVRELEAELDAE 1634
Cdd:COG5185    575 NRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENELGKV 613
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
1013-1296 1.34e-04

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 47.10  E-value: 1.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1013 LLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSK----LRNKYEAVMA----------DMEDRLKKEEKGRQE 1078
Cdd:PRK10246   532 LDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQeeqaLTQQWQAVCAslnitlqpqdDIQPWLDAQEEHERQ 611
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1079 LEKLKRK--LDGEAGDLQEQVAELQQQLEELRQALARK----------EAELQAALARVEDEAA---QKNAVLKSLRELQ 1143
Cdd:PRK10246   612 LRLLSQRheLQGQIAAHNQQIIQYQQQIEQRQQQLLTAlagyaltlpqEDEEASWLATRQQEAQswqQRQNELTALQNRI 691
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1144 AQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEV-----TELKKTIEEEVKVHEA 1218
Cdd:PRK10246   692 QQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAqaqfdTALQASVFDDQQAFLA 771
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542 1219 QVLDMRQRHTsaLEELSEQLEQSRRFKINL-EKTKQALEgENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGE 1296
Cdd:PRK10246   772 ALLDEETLTQ--LEQLKQNLENQRQQAQTLvTQTAQALA-QHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGE 847
PRK12704 PRK12704
phosphodiesterase; Provisional
1483-1646 1.36e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 46.69  E-value: 1.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1483 LAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDD----LVSSKDDVGKNVHELER 1558
Cdd:PRK12704    28 IAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKlekrLLQKEENLDRKLELLEK 107
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1559 FKRALEQQVQEMRAQMEELEdelqatedgklRLEVNMQALKAQHERELQN-----RDDAnddkKKLLSKQVRElEAELDA 1633
Cdd:PRK12704   108 REEELEKKEKELEQKQQELE-----------KKEEELEELIEEQLQELERisgltAEEA----KEILLEKVEE-EARHEA 171
                          170
                   ....*....|....*...
gi 1033370542 1634 -----ERKQRAQALAGRK 1646
Cdd:PRK12704   172 avlikEIEEEAKEEADKK 189
PLN03229 PLN03229
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
1081-1370 1.50e-04

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional


Pssm-ID: 178768 [Multi-domain]  Cd Length: 762  Bit Score: 46.77  E-value: 1.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1081 KLKRKLDGEAGDLQEQVAELQQQLEELRQALAR-KEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDmesekLA 1159
Cdd:PLN03229   422 KKREAVKTPVRELEGEVEKLKEQILKAKESSSKpSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREE-----FS 496
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1160 RAKAEKQ--RRDLGEELEALKTELEDTLDSTAAQQELRSK---------------REQEVTELKKTIEEEVKvheaQVLD 1222
Cdd:PLN03229   497 KANSQDQlmHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKldmlnefsrakalseKKSKAEKLKAEINKKFK----EVMD 572
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1223 mRQRHTSALEELSEQLEQSRRFKINL--EKTKQALEGENAEMQKEV-KLLQAAKLESEQRRKKlegQVQELQLRAGEGER 1299
Cdd:PLN03229   573 -RPEIKEKMEALKAEVASSGASSGDEldDDLKEKVEKMKKEIELELaGVLKSMGLEVIGVTKK---NKDTAEQTPPPNLQ 648
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1033370542 1300 AKAE-LVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEE 1370
Cdd:PLN03229   649 EKIEsLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEK 720
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
1003-1239 1.51e-04

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 46.67  E-value: 1.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1003 EAKLKKMEEDLLVLEDQNSKLHKERKLMEErLSEFTShmAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRqeLEKL 1082
Cdd:pfam09731  218 PETPPKLPEHLDNVEEKVEKAQSLAKLVDQ-YKELVA--SERIVFQQELVSIFPDIIPVLKEDNLLSNDDLNSL--IAHA 292
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1083 KRKLDGEAGDLQEQVAELQQQLEE-LRQALARKEAELQAALARVEDEAAQKNAVLKslRELQAQLAELQEDMESEklara 1161
Cdd:pfam09731  293 HREIDQLSKKLAELKKREEKHIERaLEKQKEELDKLAEELSARLEEVRAADEAQLR--LEFEREREEIRESYEEK----- 365
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1162 kaekqrrdLGEELEALKTELEDTLDSTAAQQELRSKREQEvTELKKTIEEEVKVHEAQVLDMrqrhTSALEELSEQLE 1239
Cdd:pfam09731  366 --------LRTELERQAEAHEEHLKDVLVEQEIELQREFL-QDIKEKVEEERAGRLLKLNEL----LANLKGLEKATS 430
COG5281 COG5281
Phage-related minor tail protein [Mobilome: prophages, transposons];
1089-1692 1.84e-04

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 227606 [Multi-domain]  Cd Length: 833  Bit Score: 46.56  E-value: 1.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1089 EAGDLQEQVAELQQQLEeLRQALARKEAELQAALARVEDEAAQKNAvlkslrelqaqlAELQEDMESEKLArakAEKQRR 1168
Cdd:COG5281     28 EAIDVIKQASRFLAQGV-RRGEEFNSVNESGDRAVRALAAGVGKAA------------ADLRQMADAQALA---ADKAVP 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1169 DLGEELEALKTELEDTLDSTAAQQELRSkreqevtelkktieeevkvheAQVLDMRQRHTSALEELSEQLEQSRRFKINL 1248
Cdd:COG5281     92 SLISLKEQLRDEYPEPVQFTDIATQLAG---------------------GQWPWLINLQQGGQATLSFGLIGPAARIANV 150
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1249 EKTKQALEGENAE-----MQKEVKLLQAAKLESEQRRKKLEG-------QVQELQLRAGEGERAK------AELVERLVK 1310
Cdd:COG5281    151 LTAAGALVAVGAAgyaaaLGAGAMAWYAGAQETEAFNKVLILtgeyagtTAAQLRAGAAAGITQHqaaevlAQLVAAGVA 230
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1311 LQNELDGVSGT-------LGSTESKTIKLAKDLAtveshlQDTQELLQEETRQKLNLSSRVRQLEE--EKAAMLEQLEEE 1381
Cdd:COG5281    231 TAEQLGDVAQAaarfasaSGESIDKTIKAFSKLT------DDPVNGAKALNRQFHYLTAAQLEQIAalQRAGDTAAAAAA 304
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1382 EAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEA------IEEARRRAAKDLESLSVRYEERVQACDKLEKGrTRLQQEL 1455
Cdd:COG5281    305 AAEAAAAMDDRTARVKENMGTLETAWDALADAAKkmwdavLGIGREDKQAALLAAKLAAEKLARVTAQGALN-ARLKLAQ 383
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1456 DDVTVALDQQRQVVSALEKKQkkfDQMLAEEKLISARYAEERDRAEAdareketkvlSLSRALEEALETREEMERQNKQL 1535
Cdd:COG5281    384 DDLTQAELNYAAADQAANQEG---ALNAREDEAEVLSTQEERRDILK----------NLLADAEKRTARQEELNKALAKA 450
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1536 RAEMDDLVSSKD--DVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLR--------------LEVNMQALK 1599
Cdd:COG5281    451 KILQADKAAKAYqeDILQREAQSRGKTAAAERSQEQMTAALKALLAFQQQIADLSGAkekasdqksllwkaEEQYALLKE 530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1600 AQHERELQNRDDANDDKKKLLskqvrELEAELDAERKQRAQalagrkKLELDLQEAMAQLDAANKGRDEAGKQLRK-LQA 1678
Cdd:COG5281    531 EAKQRQLQEQKALLEHKKETL-----EYTSQLAELLDQQAD------RFELSAQAAGSQKERGSDLYREALAQNAAaLNK 599
                          650
                   ....*....|....*..
gi 1033370542 1679 QMKEL---WREVEEARA 1692
Cdd:COG5281    600 ALNELaayWSALDLLQG 616
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
1096-1240 1.85e-04

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 45.05  E-value: 1.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1096 QVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMES--EKLARAKAEKQRRDLGEE 1173
Cdd:COG1579     18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRaeEKLSAVKDERELRALNIE 97
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542 1174 LEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEvkvhEAQVLDMRQRHTSALEELSEQLEQ 1240
Cdd:COG1579     98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL----EKNLAEAEARLEEEVAEIREEGQE 160
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
1172-1894 1.93e-04

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 46.72  E-value: 1.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1172 EELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEvkvhEAQVLDMRQRHTSALEELSEQLEQSRRfkinLEKT 1251
Cdd:PRK10246   191 EQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDE----EKQLLTAQQQQQQSLNWLTRLDELQQE----ASRR 262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1252 KQALEGENAEMQKEVKllQAAKLESEQRRKKLEGQVQELQlragegerakaELVERLVKLQNELDGVSGTLGSTesktik 1331
Cdd:PRK10246   263 QQALQQALAAEEKAQP--QLAALSLAQPARQLRPHWERIQ-----------EQSAALAHTRQQIEEVNTRLQST------ 323
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1332 LAKDLATVESHLQDTQELLQEETRQK--LNLSSRVRQLEEEKAAMLEQLEEEEAAKAnfsrQMQSLQQQVMETKKKLE-- 1407
Cdd:PRK10246   324 MALRARIRHHAAKQSAELQAQQQSLNtwLAEHDRFRQWNNELAGWRAQFSQQTSDRE----QLRQWQQQLTHAEQKLNal 399
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1408 ---------EDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQvvsalekKQKK 1478
Cdd:PRK10246   400 paitltltaDEVAAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQ-------RYKE 472
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1479 FDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALE-------EALET------REEMERQNKQLRAEMDDLVSS 1545
Cdd:PRK10246   473 KTQQLADVKTICEQEARIKDLEAQRAQLQAGQPCPLCGSTShpaveayQALEPgvnqsrLDALEKEVKKLGEEGAALRGQ 552
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1546 KDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQAlKAQHERELQNRDDANDDKKKLLS--KQ 1623
Cdd:PRK10246   553 LDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDA-QEEHERQLRLLSQRHELQGQIAAhnQQ 631
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1624 VRELEAELDAERKQRAQALAGrkkLELDLQEAMAQLDAANKGRDEAGK------QLRKLQAQMKEL------WREVEEAR 1691
Cdd:PRK10246   632 IIQYQQQIEQRQQQLLTALAG---YALTLPQEDEEASWLATRQQEAQSwqqrqnELTALQNRIQQLtplletLPQSDDLP 708
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1692 AAREEIFIQS-RESEKKLKNLEAEL--LQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEkrhlearigqle 1768
Cdd:PRK10246   709 HSEETVALDNwRQVHEQCLSLHSQLqtLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDE------------ 776
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1769 eeldeeqsnmellnDRYRKLSMQVETLTTELGAERSFSqktENARQQLERQnkdLRAKLGEMDSSVKSKykmaiaTLESK 1848
Cdd:PRK10246   777 --------------ETLTQLEQLKQNLENQRQQAQTLV---TQTAQALAQH---QQHRPDGLDLTVTVE------QIQQE 830
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*....
gi 1033370542 1849 VAQLEEQL-EQESRERILSGKLVRRAE--KKLKEVILQVDEERRNADQY 1894
Cdd:PRK10246   831 LAQLAQQLrENTTRQGEIRQQLKQDADnrQQQQALMQQIAQATQQVEDW 879
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
1252-1669 2.31e-04

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 46.20  E-value: 2.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1252 KQALEGENAEMQKEVKLLQAAkLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTEsktik 1331
Cdd:PRK10929    33 EQAKAAKTPAQAEIVEALQSA-LNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDA----- 106
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1332 LAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLeeeeaakANFSRQMQSLQQqvmeTKKKLEEDAG 1411
Cdd:PRK10929   107 LEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQL-------NEIERRLQTLGT----PNTPLAQAQL 175
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1412 VAEAIEEARRRAAKD---LESLSVRYEE---RVQAcDKLEKGRTRLQQELDDVTVALDQQRQVV--SALEKKQkkfdqML 1483
Cdd:PRK10929   176 TALQAESAALKALVDeleLAQLSANNRQelaRLRS-ELAKKRSQQLDAYLQALRNQLNSQRQREaeRALESTE-----LL 249
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1484 AEEklisaryaeerdraEADAREKETKVLSLSRALEEALetreemerqNKQLRaEMDDLVSSKDDVGKNVHELERFKRAL 1563
Cdd:PRK10929   250 AEQ--------------SGDLPKSIVAQFKINRELSQAL---------NQQAQ-RMDLIASQQRQAASQTLQVRQALNTL 305
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1564 EQQVQ----------EMRAQMEELED--ELQatedgklRLEVNMQALKAQH-------ERELQNRDDANDDKKKLLSKQV 1624
Cdd:PRK10929   306 REQSQwlgvsnalgeALRAQVARLPEmpKPQ-------QLDTEMAQLRVQRlryedllNKQPQLRQIRQADGQPLTAEQN 378
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*...
gi 1033370542 1625 RELEAELDAERKQRAQALAGRKKLELDLQE---AMAQLDAANKGRDEA 1669
Cdd:PRK10929   379 RILDAQLRTQRELLNSLLSGGDTLILELTKlkvANSQLEDALKEVNEA 426
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1620-1889 2.34e-04

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 45.79  E-value: 2.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1620 LSKQVRELEAELDAERKQRAQALAGRKKLELDLQ-------EAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARA 1692
Cdd:COG4372     79 IRPQLRALRTELGTAQGEKRAAETEREAARSELQkarqereAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAE 158
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1693 AREEIFIQSRESEKKLKNLEAELLQLQ-EDLAASERAKRQAQQERD---------DLADELANGNSGKSALLDEKRHLEA 1762
Cdd:COG4372    159 QRRQLEAQAQSLQASQKQLQASATQLKsQVLDLKLRSAQIEQEAQNlatranaaqARTEELARRAAAAQQTAQAIQQRDA 238
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1763 RIGQLEEELDEEQSNMELLNDRYRKLSMQVETLTTELG-AERSFSQKTENARQQLERQNKDLRAKLGEMDSSVKSKYKMA 1841
Cdd:COG4372    239 QISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAqLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQAQ 318
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 1033370542 1842 IATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERR 1889
Cdd:COG4372    319 AQLLSSANRPAALRLRRSPRRGRRQRPVTRHTTRRRRPATRQSPSGRE 366
RecN COG0497
DNA repair ATPase RecN [Replication, recombination and repair];
1216-1467 2.34e-04

DNA repair ATPase RecN [Replication, recombination and repair];


Pssm-ID: 223571 [Multi-domain]  Cd Length: 557  Bit Score: 46.05  E-value: 2.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1216 HEAQVLDMRQRHTSALEELSEQLEQSRRfkiNLEKTKQALEgenaEMQKEVKLLQAAKLESEQRRKKLEGQVQELQ---L 1292
Cdd:COG0497    130 HEHQSLLKPELQRQLLDAFAGLEELAQE---AYQEAYQAWK----QARRELEDLQEKERERAQRADLLQFQLEELEelnL 202
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1293 RAGEGErakaELVERLVKLQNeldgvsgtlgstesktiklAKDLATVeshLQDTQELLQEEtRQKLNLSSRVRQLEEEKA 1372
Cdd:COG0497    203 QPGEDE----ELEEERKRLSN-------------------SEKLAEA---IQNALELLSGE-DDTVSALSLLGRALEALE 255
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1373 AMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEE---DAGVAEAIEE-------ARRRAAKDLESLsVRYEERVQA-- 1440
Cdd:COG0497    256 DLSEYDGKLSELAELLEEALYELEEASEELRAYLDElefDPNRLEEVEErlfalksLARKYGVTIEDL-LEYLDKIKEel 334
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1033370542 1441 ---------CDKLEKGRTRLQQELDDVTVALDQQRQ 1467
Cdd:COG0497    335 aqldnseesLEALEKEVKKLKAELLEAAEALSAIRK 370
RecN COG0497
DNA repair ATPase RecN [Replication, recombination and repair];
900-1151 2.45e-04

DNA repair ATPase RecN [Replication, recombination and repair];


Pssm-ID: 223571 [Multi-domain]  Cd Length: 557  Bit Score: 46.05  E-value: 2.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  900 DLKELENKYQQLSEEKTILAEQLQAETELFAEAEemraRLAARKQELEDIlhelesrvEEEEERCQQLQGDKKKMQQHVQ 979
Cdd:COG0497    155 AQEAYQEAYQAWKQARRELEDLQEKERERAQRAD----LLQFQLEELEEL--------NLQPGEDEELEEERKRLSNSEK 222
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  980 DLEEQLEeeeaARQKLQLE--KVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNK 1057
Cdd:COG0497    223 LAEAIQN----ALELLSGEddTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNR 298
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1058 YEAVmadmEDRLkkeekgrQELEKLKRKLDGEAGDLQEQVAELQQQLEELrQALARKEAELQAALARVEDEAAQKNAVLK 1137
Cdd:COG0497    299 LEEV----EERL-------FALKSLARKYGVTIEDLLEYLDKIKEELAQL-DNSEESLEALEKEVKKLKAELLEAAEALS 366
                          250       260
                   ....*....|....*....|
gi 1033370542 1138 SLR-----ELQAQL-AELQE 1151
Cdd:COG0497    367 AIRkkaakELEKEVtAELKA 386
Atg14 pfam10186
Vacuolar sorting 38 and autophagy-related subunit 14; The Atg14 or Apg14 proteins are ...
1103-1246 2.83e-04

Vacuolar sorting 38 and autophagy-related subunit 14; The Atg14 or Apg14 proteins are hydrophilic proteins with a predicted molecular mass of 40.5 kDa, and have a coiled-coil motif at the N-terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole. Subcellular fractionation indicate that Apg14p and Apg6p are peripherally associated with a membrane structure(s). Apg14p was co-immunoprecipitated with Apg6p, suggesting that they form a stable protein complex. These results imply that Apg6/Vps30p has two distinct functions: in the autophagic process and in the vacuolar protein sorting pathway. Apg14p may be a component specifically required for the function of Apg6/Vps30p through the autophagic pathway. There are 17 auto-phagosomal component proteins which are categorized into six functional units, one of which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The AS-PI3K complex and the Atg2-Atg18 complex are essential for nucleation, and the specific function of the AS-PI3K apparently is to produce phosphatidylinositol 3-phosphate (PtdIns(3)P) at the pre-autophagosomal structure (PAS). The localization of this complex at the PAS is controlled by Atg14. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. This effect seems to be mediated through direct interaction of the human Atg14 with Beclin 1 in the human phosphatidylinositol 3-kinase class III complex.


Pssm-ID: 431120 [Multi-domain]  Cd Length: 347  Bit Score: 45.14  E-value: 2.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1103 QLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEdmesEKLARAKAEKQRRDLGEELEALKTELE 1182
Cdd:pfam10186   20 RLYELRVRLARLLSENDSLKKKVEEALEGKEEGNQLEDNIGNKKLKLRL----LKSEIAISNERLNEIKDKLDQLRREIA 95
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1033370542 1183 DTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKI 1246
Cdd:pfam10186   96 EKKKKIEKLRSKLKQRRSDLESAQYQLEERRASQLAKLQNSIKRIKQKWTALHSLTAESRSFLC 159
Cortex-I_coil pfam09304
Cortexillin I, coiled coil; Members of this family are predominantly found in the ...
1083-1186 2.86e-04

Cortexillin I, coiled coil; Members of this family are predominantly found in the actin-bundling protein Cortexillin I from Dictyostelium discoideum. They adopt a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and are a prerequisite for the assembly of Cortexillin I.


Pssm-ID: 312712 [Multi-domain]  Cd Length: 107  Bit Score: 42.30  E-value: 2.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1083 KRKLDGEAGDLQEQVAELQQQLEE---LRQALARKEAELQAALARVEDEAAQKNavlKSLRELQAQLAELQEDMESEKLA 1159
Cdd:pfam09304    4 KERLEASKNSLANKLAGLENSLESektSREQLIKQKDELESLLASLEQENAERE---KRLRELEAKLDEALKNLELEKLA 80
                           90       100
                   ....*....|....*....|....*..
gi 1033370542 1160 RAKAEKQRRDLGEELEALKTELEDTLD 1186
Cdd:pfam09304   81 RMELESRLSKTEKDKAILELKLAEALD 107
PRK11281 PRK11281
mechanosensitive channel MscK;
1603-1825 2.92e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.06  E-value: 2.92e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1603 ERELQNRDDANDdKKKLLSKQVRELEAELdaerkQRAQA-LAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQmk 1681
Cdd:PRK11281    38 EADVQAQLDALN-KQKLLEAEDKLVQQDL-----EQTLAlLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD-- 109
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1682 elwreveEARAAREEIFIQS-RESEKKLKNLEAELLQLQEDLA-----------ASERAKRQ---AQQERDDLADELANG 1746
Cdd:PRK11281   110 -------NDEETRETLSTLSlRQLESRLAQTLDQLQNAQNDLAeynsqlvslqtQPERAQAAlyaNSQRLQQIRNLLKGG 182
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1747 NSGKSALLDEKRH-LEARIgqleeeldeeqSNMELLNDrYRKLSMQVETLTTELGAERsFSQKTENArQQLERQNKDLRA 1825
Cdd:PRK11281   183 KVGGKALRPSQRVlLQAEQ-----------ALLNAQND-LQRKSLEGNTQLQDLLQKQ-RDYLTARI-QRLEHQLQLLQE 248
TolA COG3064
Membrane protein involved in colicin uptake [Cell wall/membrane/envelope biogenesis];
1044-1223 3.05e-04

Membrane protein involved in colicin uptake [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225606 [Multi-domain]  Cd Length: 387  Bit Score: 45.32  E-value: 3.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1044 EEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKlKRKLDGEAGDLQEQvaELQQQLEELRQALARKEAELQAALA 1123
Cdd:COG3064     78 EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQE-QQKQAEEAEKQAQL--EQKQQEEQARKAAAEQKKKAEAAKA 154
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1124 RVEDEAAQKNA----------VLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQE 1193
Cdd:COG3064    155 KAAAEAAKLKAaaeakkkaeeAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKK 234
                          170       180       190
                   ....*....|....*....|....*....|
gi 1033370542 1194 LRSKREQEVTELKKTIEEEVKVHEAQVLDM 1223
Cdd:COG3064    235 KAAAKAKADKAAAAAKAAERKAAAAALDDI 264
PRK11281 PRK11281
mechanosensitive channel MscK;
1115-1315 3.18e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.06  E-value: 3.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1115 EAELQA---ALARVEDEAAQKNAVLKSLRELQAQLAELQ---EDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDST 1188
Cdd:PRK11281    38 EADVQAqldALNKQKLLEAEDKLVQQDLEQTLALLDKIDrqkEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRET 117
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1189 AAQQELR--SKREQEVTELKKTIEEEVKVHEAQVLDMR---QRHTSALEELSEQLEQSRRFKINLEKTKQALEGEN-AEM 1262
Cdd:PRK11281   118 LSTLSLRqlESRLAQTLDQLQNAQNDLAEYNSQLVSLQtqpERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQrVLL 197
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542 1263 QKEVKLLQAaklESEQRRKKLEG--QVQELqlrageGERAKAELVERLVKLQNEL 1315
Cdd:PRK11281   198 QAEQALLNA---QNDLQRKSLEGntQLQDL------LQKQRDYLTARIQRLEHQL 243
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
828-1132 3.24e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 45.88  E-value: 3.24e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  828 ARKAFMKKQQQMSALK---VMQRNcaaylklRHWQWWRLFTKVKPLLQVTRQDEVMQ-AKAVELQKVQ-EKHTKTQMDLK 902
Cdd:pfam17380  324 ARQAEMDRQAAIYAEQermAMERE-------RELERIRQEERKRELERIRQEEIAMEiSRMRELERLQmERQQKNERVRQ 396
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  903 ELE--NKYQQLSEEKTILAEQLQAETELF------AEAEEMRARLAARKQELEDIlhelesrVEEEEERCQQLQgdkkKM 974
Cdd:pfam17380  397 ELEaaRKVKILEEERQRKIQQQKVEMEQIraeqeeARQREVRRLEEERAREMERV-------RLEEQERQQQVE----RL 465
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  975 QQHVQDLEeqleeeeaaRQKLQLEKVSTEAKLkkmeedllvLEDQNsklhkeRKLMEERLSEFTSHMAEEEEKVKSLSKL 1054
Cdd:pfam17380  466 RQQEEERK---------RKKLELEKEKRDRKR---------AEEQR------RKILEKELEERKQAMIEEERKRKLLEKE 521
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1055 RNKYEAVMADMEDRLKKEEKGRQELEKLKRKldgeagdlqeQVAELQQQLEELRQALARKEAELQAALARVEDEAAQK 1132
Cdd:pfam17380  522 MEERQKAIYEEERRREAEEERRKQQEMEERR----------RIQEQMRKATEERSRLEAMEREREMMRQIVESEKARA 589
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1423-1692 3.43e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 45.10  E-value: 3.43e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1423 AAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDqmlAEEKLISARYAEERDRAEA 1502
Cdd:COG4942     29 AAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA---DDLKKLRKQIADLNARLNA 105
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1503 DAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDElq 1582
Cdd:COG4942    106 LEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAE-- 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1583 atedgKLRLEVNMQALKAQHERELQNRddanDDKKKLLskqvRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAA 1662
Cdd:COG4942    184 -----QAELTTLLSEQRAQQAKLAQLL----EERKKTL----AQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKA 250
                          250       260       270
                   ....*....|....*....|....*....|
gi 1033370542 1663 NKGRDEAGKQLRKLQAQMKELWREVEEARA 1692
Cdd:COG4942    251 REAAAAAEAAAARARAAEAKRTGETYKPTA 280
Filament pfam00038
Intermediate filament protein;
1243-1597 3.44e-04

Intermediate filament protein;


Pssm-ID: 425436 [Multi-domain]  Cd Length: 313  Bit Score: 44.91  E-value: 3.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1243 RFKINLEKTkQALEGENAEMQKEVKLLQAAKLESEQRRKKL-EGQVQEL--QLRAGEGERAKAELverlvklqnELDGVS 1319
Cdd:pfam00038   12 RLASYIDKV-RFLEQQNKDLETKISELRQKKGAEPSRLYSLyEREIRELrrQLDTLTVERARLQL---------ELDNLR 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1320 GTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMleqleeeeaaKANFSRQMQSLQQQV 1399
Cdd:pfam00038   82 LAAEDFRQKYEDELNLRQSAEADIVGLRKDLDEATLARVDLEMKIESLKEELAFL----------KKNHEEEVRELQSQV 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1400 METKKKLEEDAG----VAEAIEEARRraakDLESLSVRYEERVQAcdklekgrtRLQQELDDVTVALDQQRQVVSAlekk 1475
Cdd:pfam00038  152 SDTQVNVEMDAArkldLTSALAEIRA----QYEEIAEKNREEAEE---------WYQSKLEELQQAAARNGDALRS---- 214
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1476 qkkfdqmlAEEKLISARYAEERDRAEADAreketkVLSLSRALEEAL-ETREEMERQNKQLRAEMDDLvsskddvgknvh 1554
Cdd:pfam00038  215 --------AKEEITELRRQIQSLEIELQS------LKKQKASLERQLaETEERYELQLADYQELISEL------------ 268
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|...
gi 1033370542 1555 elerfkralEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQA 1597
Cdd:pfam00038  269 ---------EAELQQIRQEMARQLREYQELLNVKLALDIEIAT 302
PRK11281 PRK11281
mechanosensitive channel MscK;
1129-1373 3.70e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 45.67  E-value: 3.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1129 AAQKNAVLKSLRELQAQLAELQEdmeseklarakaekqRRDLGEELEALKTELEDTLDSTAAQQelrsKREQEVTELKKT 1208
Cdd:PRK11281    28 RAASNGDLPTEADVQAQLDALNK---------------QKLLEAEDKLVQQDLEQTLALLDKID----RQKEETEQLKQQ 88
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1209 I-----------EEEVKVHEAQVLDMRQRHTSA-LEELSEQLEQSRrfkINLEKTKQALEGENAEM---QKEVKLLQAAK 1273
Cdd:PRK11281    89 LaqapaklrqaqAELEALKDDNDEETRETLSTLsLRQLESRLAQTL---DQLQNAQNDLAEYNSQLvslQTQPERAQAAL 165
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1274 LESEQR----RKKL-EGQVQELQLRAGEGERAKAELVerLVKLQNELDGVSGTLGSTESKTIKLAKDLATVES-HLQDTQ 1347
Cdd:PRK11281   166 YANSQRlqqiRNLLkGGKVGGKALRPSQRVLLQAEQA--LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIqRLEHQL 243
                          250       260
                   ....*....|....*....|....*...
gi 1033370542 1348 ELLQEETRQK-LNLSSR-VRQLEEEKAA 1373
Cdd:PRK11281   244 QLLQEAINSKrLTLSEKtVQEAQSQDEA 271
PRK01156 PRK01156
chromosome segregation protein; Provisional
886-1351 3.78e-04

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 45.66  E-value: 3.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  886 ELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILhELESRVEEEEERCQ 965
Cdd:PRK01156   205 QIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMEL-EKNNYYKELEERHM 283
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  966 QLQGDKK-KMQQHVQDLEEQLEEEEAARQKLQ---LEKVSTEAKLKKMEE------DLLVLEDQNSKLHKERKLMEERLS 1035
Cdd:PRK01156   284 KIINDPVyKNRNYINDYFKYKNDIENKKQILSnidAEINKYHAIIKKLSVlqkdynDYIKKKSRYDDLNNQILELEGYEM 363
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1036 EFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKE 1115
Cdd:PRK01156   364 DYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELS 443
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1116 AELQAALAR------------------VEDEAAQKNAVLKSLRELQAQLAELQEDMESEK--LARAKAEKQRRDLGE--E 1173
Cdd:PRK01156   444 RNMEMLNGQsvcpvcgttlgeeksnhiINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKkrKEYLESEEINKSINEynK 523
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1174 LEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLD-MRQRHT-------SALEELSEQL----EQS 1241
Cdd:PRK01156   524 IESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNaLAVISLidietnrSRSNEIKKQLndleSRL 603
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1242 RRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQR---RKKLEGQVQELQLRAGEG---ERAKAELVERLVKLQNEL 1315
Cdd:PRK01156   604 QEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENkilIEKLRGKIDNYKKQIAEIdsiIPDLKEITSRINDIEDNL 683
                          490       500       510
                   ....*....|....*....|....*....|....*.
gi 1033370542 1316 DGVSGTLGSTESktiKLAKDLATVESHLQDTQELLQ 1351
Cdd:PRK01156   684 KKSRKALDDAKA---NRARLESTIEILRTRINELSD 716
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
886-1194 3.80e-04

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 45.26  E-value: 3.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  886 ELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILhelesrveeeeercq 965
Cdd:pfam07888   88 ELRQSREKVEELEEKYKELSRSGEELAEEKDALLAQRAESEARIRELEEDIKTLTQRVLERETEL--------------- 152
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  966 qlqgdkKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEE 1045
Cdd:pfam07888  153 ------ERMKERVKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAH 226
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1046 EKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQE---QVAELQQQLEELRQAL----ARKEAEL 1118
Cdd:pfam07888  227 RKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQarlQAAQLTLQLADASLALregrARWAQER 306
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1119 QAALARVEdeaAQKNAVLKSLRELQAQLAELQED-MESEKL----------ARAKAEKQRRDLGEELEALKTELEDTLDS 1187
Cdd:pfam07888  307 ETLQQSAE---ADKDRIEKLSAELQRLEERLQEErMEREKLevelgrekdcNRVQLSESRRELQELKASLRVAQKEKEQL 383

                   ....*..
gi 1033370542 1188 TAAQQEL 1194
Cdd:pfam07888  384 QAEKQEL 390
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
1228-1966 3.83e-04

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 45.60  E-value: 3.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1228 TSALEELSEQLEQSRRFKINLEKtKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVER 1307
Cdd:COG4717    153 TSGSPASTKLLEVLNKEADSLYK-PSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRAD 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1308 LVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKlNLSSRVRQLE---EEKAAMLEQLEEEEAA 1384
Cdd:COG4717    232 RDHIRALRDAVELWPRLQEWKQLEQELTRRREELATFPRDGVLRLEKREA-HLQKTEAEIDallVRLAELKDLASQLIPA 310
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1385 KANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRaaKDLESLSVRYEERVQACDKLEKGRT------RLQQELDDV 1458
Cdd:COG4717    311 KEAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRD--KEEAAGNGFEAERVHDLRSLECMLRyqssqrELKQTEAAY 388
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1459 TVALDQQRQvvsalekkqkkFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAE 1538
Cdd:COG4717    389 CKRLDEKRL-----------FEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQKQRFL 457
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1539 MDdlvsskddvgknvhELERFKRALEQQ---VQEMRAQME--ELEDELQATEDGKLRLEVNMQALKAQherelqnrddan 1613
Cdd:COG4717    458 RE--------------KQTAFERQKTEHtkiIALRLAGMLlvALSRLLTSLIFQIIFAVAQIVFLSAE------------ 511
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1614 ddkKKLLSKQVRELEAELDAERKQRAQALAgrkklELDLQEAMAQLDAANKGRDEAGKQLRKL---QAQMKELWREVEEA 1690
Cdd:COG4717    512 ---IKSSSRAVREEKAAVTDIPEELARLLI-----TDELPELAVDLLVQSRIRQHWQQLRKALdqlEAAYEALEGRFAAA 583
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1691 RAAREEIFIQSRE-------SEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEkrhLEAR 1763
Cdd:COG4717    584 EAAMAEWQSEWEEaldelglSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAV---LEAQ 660
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1764 IGQLEEE--LDEEQSNMELLNDRYRKLSMQVETLTTELGAErsfsqkTENARQQLERQNKDL--RAKLGEMDSSVKSKYK 1839
Cdd:COG4717    661 FIDLSTLfcVQRLRVAAELQKEEARLALEGNIERTKELNDE------LRAELELHRKEILDLfdCGTADTEDAFREAARE 734
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1840 MAIAT-LESKVAQLEEQLEQESRERIlsGKLVRRAEKKLKEVILQVDEERRnaDQYKDQVEKGHLRLKQLKRQLEEAEEE 1918
Cdd:COG4717    735 EQQLTqRESRLESLEAQLEGVAAEAY--ELSASLDQRELKEEELALLEEAI--DALDEEVEELHAQVAALSRQIAQLEGG 810
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*...
gi 1033370542 1919 ASRANAsRRRMQRELEDVTESAESMNREVTSLRNRLSKVERRQRKRTP 1966
Cdd:COG4717    811 GTVAEL-RQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLP 857
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
1057-1826 3.83e-04

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 45.60  E-value: 3.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1057 KYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQvaelQQQLEELRQALARKEAElQAALARVEDEAAQKNAVL 1136
Cdd:COG4717    161 KLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEA----EKEYATYHKLLESRRAE-HARLAELRSELRADRDHI 235
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1137 KSLRELQAQLAELQEDME-SEKLARAKAEKQR--RDLGEELEALKTELEdtldSTAAQQELRSKREQEVTELKKtieeev 1213
Cdd:COG4717    236 RALRDAVELWPRLQEWKQlEQELTRRREELATfpRDGVLRLEKREAHLQ----KTEAEIDALLVRLAELKDLAS------ 305
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1214 kvheaQVLDMRQRHTSALEELSEQLeqSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEgQVQELQLR 1293
Cdd:COG4717    306 -----QLIPAKEAVLQALVRLHQQL--SEIKASAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLRSLE-CMLRYQSS 377
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1294 AGEGERAKAELVERLVKLQNELDgvsgtlgSTESKTIKlakDLATVESHLQDTQELLQEetrqKLNLSSRVRQLEEEKAA 1373
Cdd:COG4717    378 QRELKQTEAAYCKRLDEKRLFED-------EAEEEARQ---RLADDEEEVRAGDEAREE----KIAANSQVIDKEEVCNL 443
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1374 MLEQLEEEEaakanfsRQMQSLQQQVMETKKKLEEDAGVAeaieeaRRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQ 1453
Cdd:COG4717    444 YDRRDTAWQ-------KQRFLREKQTAFERQKTEHTKIIA------LRLAGMLLVALSRLLTSLIFQIIFAVAQIVFLSA 510
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1454 ELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSlsraleealETREEMERQNK 1533
Cdd:COG4717    511 EIKSSSRAVREEKAAVTDIPEELARLLITDELPELAVDLLVQSRIRQHWQQLRKALDQLE---------AAYEALEGRFA 581
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1534 QLRAEMDDLVSskddvgknvhELERFKRALEQQVQEMRAQMEELEDELQA-TEDGKLRLEVNMQALK-AQHERELQNRDD 1611
Cdd:COG4717    582 AAEAAMAEWQS----------EWEEALDELGLSRELSPEQQLDILSTMKDlKKLMQKKAELTHQVARlREEQAAFEERVE 651
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1612 ANDdkkKLLSKQVRELEAELDAERKQRAQALA---GRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLqaqmkelwreVE 1688
Cdd:COG4717    652 GLL---AVLEAQFIDLSTLFCVQRLRVAAELQkeeARLALEGNIERTKELNDELRAELELHRKEILDL----------FD 718
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1689 EARAAREEIFIQSRESEKKLKNLEAELlqlQEDLAASERAkrqaqqerDDLADELANGNSGKSALLDEKRHLEARIgqle 1768
Cdd:COG4717    719 CGTADTEDAFREAAREEQQLTQRESRL---ESLEAQLEGV--------AAEAYELSASLDQRELKEEELALLEEAI---- 783
                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1769 eelDEEQSNMELLNDRYRKLSMQVETLttELGAERSfsqkteNARQQLERQNKDLRAK 1826
Cdd:COG4717    784 ---DALDEEVEELHAQVAALSRQIAQL--EGGGTVA------ELRQRRESLKEDLEEK 830
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
1540-1894 4.18e-04

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 45.81  E-value: 4.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1540 DDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDelqatedgklrleVNMQALKAQHERELQNRDD---ANDDK 1616
Cdd:TIGR01612 1118 DDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLED-------------VADKAISNDDPEEIEKKIEnivTKIDK 1184
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1617 KKLLSKQVRELEAELdAERKQRAQALAGRKKLELDLQEAMAQ--LDAANKGRDEAGKQLRKLQAQMKELwreveearaar 1694
Cdd:TIGR01612 1185 KKNIYDEIKKLLNEI-AEIEKDKTSLEEVKGINLSYGKNLGKlfLEKIDEEKKKSEHMIKAMEAYIEDL----------- 1252
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1695 EEIFIQSRESEKKLK-----NLEAELLQLQEDlaASERAKRQAQQERDDLAD------ELANGNSGKSALLDEKRHLEAR 1763
Cdd:TIGR01612 1253 DEIKEKSPEIENEMGiemdiKAEMETFNISHD--DDKDHHIISKKHDENISDirekslKIIEDFSEESDINDIKKELQKN 1330
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1764 IGQLEEELDEEQSNMELLNDRYRKLsmqvetlttELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSSVKS-KYKMAI 1842
Cdd:TIGR01612 1331 LLDAQKHNSDINLYLNEIANIYNIL---------KLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKiKDDINL 1401
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1033370542 1843 ATLESKVaqleeqleqesrERILSGKLVRRAEKKLKEVILQVDEERRNADQY 1894
Cdd:TIGR01612 1402 EECKSKI------------ESTLDDKDIDECIKKIKELKNHILSEESNIDTY 1441
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1007-1238 4.88e-04

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 45.02  E-value: 4.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1007 KKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELeklkRKL 1086
Cdd:COG4372     67 RNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQEL----ARL 142
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1087 DGEAGDLQEQVAEL---QQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKA 1163
Cdd:COG4372    143 TKQAQDLQTRLKTLaeqRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARR 222
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1164 EKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKT---IEEEVKVHEAQVLDMRQRHTSALEELSEQL 1238
Cdd:COG4372    223 AAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAqarLEQEVAQLEAYYQAYVRLRQQAAATQRGQV 300
COG5281 COG5281
Phage-related minor tail protein [Mobilome: prophages, transposons];
1073-1553 5.38e-04

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 227606 [Multi-domain]  Cd Length: 833  Bit Score: 45.02  E-value: 5.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1073 EKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDeAAQKNAVLKSLRELQAQLAElqed 1152
Cdd:COG5281    177 YAGAQETEAFNKVLILTGEYAGTTAAQLRAGAAAGITQHQAAEVLAQLVAAGVAT-AEQLGDVAQAAARFASASGE---- 251
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1153 mESEKLARAkAEKQRRDLGEELEALKTELEDTldsTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMR-QRHTSAL 1231
Cdd:COG5281    252 -SIDKTIKA-FSKLTDDPVNGAKALNRQFHYL---TAAQLEQIAALQRAGDTAAAAAAAAEAAAAMDDRTARvKENMGTL 326
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1232 EelSEQLEQSRRFKinleKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKL 1311
Cdd:COG5281    327 E--TAWDALADAAK----KMWDAVLGIGREDKQAALLAAKLAAEKLARVTAQGALNARLKLAQDDLTQAELNYAAADQAA 400
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1312 -----QNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLS-SRVRQLEEEKAAMLEQLEEEEAAK 1385
Cdd:COG5281    401 nqegaLNAREDEAEVLSTQEERRDILKNLLADAEKRTARQEELNKALAKAKILQAdKAAKAYQEDILQREAQSRGKTAAA 480
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1386 ANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALdqq 1465
Cdd:COG5281    481 ERSQEQMTAALKALLAFQQQIADLSGAKEKASDQKSLLWKAEEQYALLKEEAKQRQLQEQKALLEHKKETLEYTSQL--- 557
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1466 rqvvsALEKKQKKFDQMLAEEKLISARYAEERDRAEADAReketKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSS 1545
Cdd:COG5281    558 -----AELLDQQADRFELSAQAAGSQKERGSDLYREALAQ----NAAALNKALNELAAYWSALDLLQGDWKAGALSALAN 628

                   ....*...
gi 1033370542 1546 KDDVGKNV 1553
Cdd:COG5281    629 YRDSATDV 636
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
880-1141 5.79e-04

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 44.63  E-value: 5.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  880 MQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHELESRVEE 959
Cdd:COG4372     83 LRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQ 162
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  960 EEERCQQLQGDKKKMQqhvqdleeqleeeeAARQKLQLEKVSTEAKLKKMEEdllvlEDQNskLHKERKLMEERLSEFTS 1039
Cdd:COG4372    163 LEAQAQSLQASQKQLQ--------------ASATQLKSQVLDLKLRSAQIEQ-----EAQN--LATRANAAQARTEELAR 221
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1040 HMAEEEEKVKSLS----KLRNKYEAVMADMEDRLKKEEKGrQELEKlkrkldgEAGDLQEQVAELQ---QQLEELR-QAL 1111
Cdd:COG4372    222 RAAAAQQTAQAIQqrdaQISQKAQQIAARAEQIRERERQL-QRLET-------AQARLEQEVAQLEayyQAYVRLRqQAA 293
                          250       260       270
                   ....*....|....*....|....*....|.
gi 1033370542 1112 ARKEAELQA-ALARVEDEAAQKNAVLKSLRE 1141
Cdd:COG4372    294 ATQRGQVLAgAAQRVAQAQAQAQAQAQLLSS 324
NtpI COG1269
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
998-1152 5.95e-04

Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];


Pssm-ID: 224188 [Multi-domain]  Cd Length: 660  Bit Score: 44.66  E-value: 5.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  998 EKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMA------EEEEKVKSLS-KLRN----KYEAVMADME 1066
Cdd:COG1269     86 EVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEdledllEELEPLAYLDfDLSLlrglKFLLVRLGLV 165
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1067 DRLKKEEK-------------------------GRQELEKLKRKLDGEAGDLQE----------QVAELQQQLEELRQAL 1111
Cdd:COG1269    166 RREKLEALvgviedevalygenveasvvivvahGAEDLDKVSKILNELGFELYEvpefdggpseLISELEEVIAEIQDEL 245
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 1033370542 1112 ARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQED 1152
Cdd:COG1269    246 ESLRSELEALAEKIAEELLAVREILEIEKALGDVLSKLART 286
EVC2_like pfam12297
Ellis van Creveld protein 2 like protein; This family of proteins is found in eukaryotes. ...
1020-1193 5.96e-04

Ellis van Creveld protein 2 like protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.


Pssm-ID: 432462 [Multi-domain]  Cd Length: 429  Bit Score: 44.66  E-value: 5.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1020 NSKLHKERKLMEERLSE--------FTSHMA-EEEEKVKSLSKlrnKYEAVMADMEDRLKK-EEKGRQELEKLKRKLDG- 1088
Cdd:pfam12297  198 SSVFNKQFLAMEGRLQEeygrkmaaLAAECNlETREKMEAQHQ---KEMAEKEEAEELLQHaSEQEALECSSLLDKLHKl 274
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1089 EAGDLQ--------EQVAELQQQLEELRqalaRKE------AELQAALARVEDEAAQKNAVLKSLRELQAQLAEL-QEDM 1153
Cdd:pfam12297  275 EQEHLQrslllkqeEEFAKARRQLAVKR----RVElhkiffEQLKEATRKGELKEEAAKRLLHDYSKIQDTIEELmDFFQ 350
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1033370542 1154 ESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQE 1193
Cdd:pfam12297  351 ANQRYHLEERFAQREYLVKSLQSLETHISALLNTAATQLT 390
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
1066-1312 6.44e-04

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 224259 [Multi-domain]  Cd Length: 294  Bit Score: 43.90  E-value: 6.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1066 EDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQ 1145
Cdd:COG1340     12 ELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKE 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1146 LAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQ-EVTELKKTIEEEVKVHEAQVLDMR 1224
Cdd:COG1340     92 YRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKElEDAKKALEENEKLKELKAEIDELK 171
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1225 QRHTSALEELSEQLEQSRRFKINLEKTKQALEgenaEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAEL 1304
Cdd:COG1340    172 KKAREIHEKIQELANEAQEYHEEMIKLFEEAD----ELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247

                   ....*...
gi 1033370542 1305 VERLVKLQ 1312
Cdd:COG1340    248 RAKEKAAK 255
HOOK pfam05622
HOOK protein; This family consists of several HOOK1, 2 and 3 proteins from different ...
886-1267 6.47e-04

HOOK protein; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head.


Pssm-ID: 428548 [Multi-domain]  Cd Length: 526  Bit Score: 44.66  E-value: 6.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  886 ELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEM--------RARLAARKQ--ELEDILHELES 955
Cdd:pfam05622    1 ELSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQAENKKLQERLNQLESFdesgtptsKKYSLLQKQleQLQEENFRLET 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  956 RVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEaKLKKMEEDLLV----LEDQNSkLHKERKLME 1031
Cdd:pfam05622   81 ARDDYRIKCEELEKEVLELQHRNEELTSLAEEAQALKDEIDILRESSD-KVSKLEATVETykkkLEDLGD-LRRQVKLLE 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1032 ERLSEFTSHMAEEEEKVKSLSKLRNKYEA-------VMADMEDRLKKEEKGRQELEKLKRKLDG----------EAGDLQ 1094
Cdd:pfam05622  159 ERNAVYMQNTVSLEEELKKANALRGQLELykrqvqeLHGKLSEESKKADKLEFEYKKLEEKLEAlqkekerliiERDTLR 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1095 EQVAEL---QQQLEELRQALARKE--------------AELQAALARVEDEaaqkNAVLKSLRELQAQ--LAELQEDMES 1155
Cdd:pfam05622  239 ETNEELrcaQLQQDELSQADALGSpsssvdnlaaeilpAEIREKLIRLQHE----NKMLRLQQEGSERekLTELQALLED 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1156 EKLARAKAEKQRRDLGEELEALKTELEDTldsTAAQQELRSKREQEVTELKKTIEEEVKVHEAQvlDMRQRHTSALEELS 1235
Cdd:pfam05622  315 ANRRKNELETQNRLANQRILELQQQVEEL---QKALQEQGSKAEDSSLLKQKLEEHLEKLHEAQ--EELQKKKEQLEELE 389
                          410       420       430
                   ....*....|....*....|....*....|..
gi 1033370542 1236 EQLEQSRRFKINLEKTKQALEGENAEMQKEVK 1267
Cdd:pfam05622  390 PKVDSNLQKIDELQEALRKKDEDMKAMEERYK 421
PLN03229 PLN03229
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
997-1210 6.66e-04

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional


Pssm-ID: 178768 [Multi-domain]  Cd Length: 762  Bit Score: 44.85  E-value: 6.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  997 LEKVSTEAKLKKMEEDLLVLEDQNSKLH-----KERKLMEE---RLSEFTSH--------MAEEEEKVKSLSKLRNKYEA 1060
Cdd:PLN03229   479 VIAMGLQERLENLREEFSKANSQDQLMHpvlmeKIEKLKDEfnkRLSRAPNYlslkykldMLNEFSRAKALSEKKSKAEK 558
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1061 VMADMEDRLkKEEKGRQElekLKRKLDGEAGDLQEQVAELQQQL-EELRQALARKEAELQAALARV------EDEAAQKN 1133
Cdd:PLN03229   559 LKAEINKKF-KEVMDRPE---IKEKMEALKAEVASSGASSGDELdDDLKEKVEKMKKEIELELAGVlksmglEVIGVTKK 634
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1134 AVLKSLR----ELQAQLAELQEDMESE-----------------KLARAKAEKQRR-DLGEELEALKTELEDTLDSTAAQ 1191
Cdd:PLN03229   635 NKDTAEQtpppNLQEKIESLNEEINKKiervirssdlkskiellKLEVAKASKTPDvTEKEKIEALEQQIKQKIAEALNS 714
                          250
                   ....*....|....*....
gi 1033370542 1192 QELRSKREQEVTELKKTIE 1210
Cdd:PLN03229   715 SELKEKFEELEAELAAARE 733
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
1563-1752 6.85e-04

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 44.41  E-value: 6.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1563 LEQQVQEMRAQMEELEDE-LQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKLLSKQVRELEAELDAERKQRAQA 1641
Cdd:PRK09510    92 LQQKQAAEQERLKQLEKErLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKA 171
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1642 LAGRKKLELDLQEAMAQLDAANKGRDEAGKqlrKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAEllqlqed 1721
Cdd:PRK09510   172 EAEAAKKAAAEAKKKAEAEAAAKAAAEAKK---KAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKA------- 241
                          170       180       190
                   ....*....|....*....|....*....|.
gi 1033370542 1722 LAASERAKRQAQQERDDLADELANGNSGKSA 1752
Cdd:PRK09510   242 AAAKAAEKAAAAKAAAEVDDLFGGLDSGKNA 272
SPEC cd00176
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ...
1022-1233 7.91e-04

Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here


Pssm-ID: 238103 [Multi-domain]  Cd Length: 213  Bit Score: 42.82  E-value: 7.91e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1022 KLHKERKLMEERLSEFTSHMAEEE--EKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAE 1099
Cdd:cd00176      4 QFLRDADELEAWLSEKEELLSSTDygDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEE 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1100 LQQQLEELRQALARKEAELQAALARVEdEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKaeKQRRDLGEELEALKT 1179
Cdd:cd00176     84 LNQRWEELRELAEERRQRLEEALDLQQ-FFRDADDLEQWLEEKEAALASEDLGKDLESVEELL--KKHKELEEELEAHEP 160
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1033370542 1180 ELEDTLDstaAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEE 1233
Cdd:cd00176    161 RLKSLNE---LAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEE 211
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1252-1551 8.26e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 43.94  E-value: 8.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1252 KQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIK 1331
Cdd:COG4942     33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQERE 112
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1332 LAKDLAtveshlqdtqELLQEETRQKLNLSSRVRQLEEEKAAmleqleeEEAAKANFSRQMQSLQQQVMETKKKLEEDAG 1411
Cdd:COG4942    113 QRRRLA----------EQLAALQRSGRNPPPALLVSPEDAQR-------SVRLAIYYGALNPARAERIDALKATLKQLAA 175
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1412 VAEAIEEARRraakdleslsvryeervqacdKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISA 1491
Cdd:COG4942    176 VRAEIAAEQA---------------------ELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANES 234
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1492 RYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGK 1551
Cdd:COG4942    235 RLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLISSTGGFGA 294
PRK11637 PRK11637
AmiB activator; Provisional
1096-1303 8.39e-04

AmiB activator; Provisional


Pssm-ID: 236942 [Multi-domain]  Cd Length: 428  Bit Score: 43.91  E-value: 8.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1096 QVAELQQQLEELRQALARKEAELQ-------AALARVEDEAAQKNAVLKSLRELQAQLAELQEDMES-----EKLARAKA 1163
Cdd:PRK11637    41 HASDNRDQLKSIQQDIAAKEKSVRqqqqqraSLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDElnasiAKLEQQQA 120
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1164 EkQRRDLGEELEAL-----KTELEDTLDSTAAQQE---------LRSKREQEVTELKKTiEEEVKVHEAQVLDMRQRHTS 1229
Cdd:PRK11637   121 A-QERLLAAQLDAAfrqgeHTGLQLILSGEESQRGerilayfgyLNQARQETIAELKQT-REELAAQKAELEEKQSQQKT 198
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1033370542 1230 AleeLSEQLEQsrrfkinlektKQALEGENAEMQKEVKLLQAAkLESEQRRKKlEGQVQELQLRageGERAKAE 1303
Cdd:PRK11637   199 L---LYEQQAQ-----------QQKLEQARNERKKTLTGLESS-LQKDQQQLS-ELRANESRLR---DSIARAE 253
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1657-1900 8.63e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 43.94  E-value: 8.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1657 AQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAReeifiqsRESEKKLKNLEAELLQLQEDLAASERAKRqaqQER 1736
Cdd:COG4942     45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL-------IETADDLKKLRKQIADLNARLNALEVQER---EQR 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1737 DDLADELANGN-SGKSALLDEKRHLEarigqleeeldeEQSNMELLNDRYRKLSMQVETLTTELGAERsfsQKTENARQQ 1815
Cdd:COG4942    115 RRLAEQLAALQrSGRNPPPALLVSPE------------DAQRSVRLAIYYGALNPARAERIDALKATL---KQLAAVRAE 179
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1816 LERQNKDLRAKLGEMDSSvKSKYKMAIATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQYK 1895
Cdd:COG4942    180 IAAEQAELTTLLSEQRAQ-QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAE 258

                   ....*
gi 1033370542 1896 DQVEK 1900
Cdd:COG4942    259 AAAAR 263
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1634-1962 9.77e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.29  E-value: 9.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1634 ERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEA---RAAREE-IFIQSRESEKKLK 1709
Cdd:TIGR02169  154 ERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAeryQALLKEkREYEGYELLKEKE 233
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1710 NLEAELLQLQEDLAASERAKRQAQQERDDLADELAngnsgksALLDEKRHLEARIgqleeeldeeqsnMELLNDRYRKLS 1789
Cdd:TIGR02169  234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLE-------EIEQLLEELNKKI-------------KDLGEEEQLRVK 293
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1790 MQVETLTTELgaersfsQKTENARQQLERQNKDLRAKLgemdssvkSKYKMAIATLESKVAQLEEQLEQESRERilsgkl 1869
Cdd:TIGR02169  294 EKIGELEAEI-------ASLERSIAEKERELEDAEERL--------AKLEAEIDKLLAEIEELEREIEEERKRR------ 352
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1870 vrraekklkevilqvdeerrnaDQYKDQVEKGHLRLKQLKRQLEEAEEEASRANASRRRMQRELEDVTESAESMNREVTS 1949
Cdd:TIGR02169  353 ----------------------DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
                          330
                   ....*....|...
gi 1033370542 1950 LRNRLSKVERRQR 1962
Cdd:TIGR02169  411 LQEELQRLSEELA 423
CCCAP pfam15964
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ...
1003-1582 1.02e-03

Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.


Pssm-ID: 435040 [Multi-domain]  Cd Length: 703  Bit Score: 44.13  E-value: 1.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1003 EAKLKKMEEDLLVLEDQ-------NSKLHKERKLM--EERLSEFT----------SHMAEEEEKVKSLSKLRNKYEAVMA 1063
Cdd:pfam15964  127 EAEVKFCKEELSEMKQRvqvvvleNEKLQQELKSQtqEETLREQTlldssgnmqnSWCTPEDSRVHQTSKRPASHNLAER 206
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1064 DMEDRLKKEEKGRQELEKLK-------RKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAvl 1136
Cdd:pfam15964  207 LKSATTGEDEKWRLELEKLKllyeaktEVLESQVKSLRKDLAESQKTCEDLKERLKHKESLVAASTSSRVGGLCLKCA-- 284
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1137 kslrELQAQLAELQEDMESEKLARAKaeKQRRDLGEELEALKTELEDtldstaAQQELRSKREQEVTELKKTieEEVKVH 1216
Cdd:pfam15964  285 ----QHEAVLAQTHTNVHMQTIERLT--KERDDLMSALVSVRSSLAE------AQQRESSAYEQVKQAVQMT--EEANFE 350
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1217 EAQVLDMRQRHTSALEELSEQLEqsRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQelqlragE 1296
Cdd:pfam15964  351 KTKALIQCEQLKSELERQKERLE--KELASQQEKRAQEKEALRKEMKKEREELGATMLALSQNVAQLEAQVE-------K 421
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1297 GERAKAELVERLVKLQNELdgvsgtlgstESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRV-RQLEeekaaml 1375
Cdd:pfam15964  422 VTREKNSLVSQLEEAQKQL----------ASQEMDVTKVCGEMRYQLNQTKMKKDEAEKEHREYRTKTgRQLE------- 484
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1376 EQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARR-----RAAKDLESLSVRYEERVQACDKLEKGRtR 1450
Cdd:pfam15964  485 IKDQEIEKLGLELSESKQRLEQAQQDAARAREECLKLTELLGESEHqlhltRLEKESIQQSFSNEAKAQALQAQQREQ-E 563
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1451 LQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERdraeadAREKETKVLSLSRALEEALETREEMER 1530
Cdd:pfam15964  564 LTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEECCTLAKKLEEI------TQKSRSEVEQLSQEKEYLQDRLEKLQK 637
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1033370542 1531 QNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQ 1582
Cdd:pfam15964  638 RNEELEEQCVQHGRMHERMKQRLRQLDKHCQATAQQLVQLLSKQNQLFKERQ 689
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
1451-1958 1.06e-03

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 44.04  E-value: 1.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1451 LQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDR----AEADAREKETKVLsLSRALEEALETRE 1526
Cdd:pfam10174  135 LRKTLEEMELRIETQKQTLGARDESIKKLLEMLQSKGLPKKSGEEDWERtrriAEAEMQLGHLEVL-LDQKEKENIHLRE 213
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1527 EMERQNK--QLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQE----------------------------MRAQMEE 1576
Cdd:pfam10174  214 ELHRRNQlqPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMlktngllhtedreeeikqmevykshskfMKNKIDQ 293
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1577 LEDELQATEDGKLRLEVNMQALKAQHERELQNRDDAnddKKKLLSKQVRE--LEAELDAER---KQRAQALAGRKKLELD 1651
Cdd:pfam10174  294 LKQELSKKESELLALQTKLETLTNQNSDCKQHIEVL---KESLTAKEQRAaiLQTEVDALRlrlEEKESFLNKKTKQLQD 370
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1652 LQEAMA-----------QLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQ--- 1717
Cdd:pfam10174  371 LTEEKStlageirdlkdMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEker 450
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1718 ----LQEDlaaSERAKRQAQQERDDLADELANGNSGKSALLDEKRHLEARIGQLEEELDEEQSNMELLNDRYRKLSMQVE 1793
Cdd:pfam10174  451 iierLKEQ---REREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVE 527
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1794 TLTTELGAERSFSQKTENARQQlERQNKDLRAKLGEMDSSVKSkYKMAIATLESKVAQLEEQLEQESRERILSgklvrra 1873
Cdd:pfam10174  528 QKKEECSKLENQLKKAHNAEEA-VRTNPEINDRIRLLEQEVAR-YKEESGKAQAEVERLLGILREVENEKNDK------- 598
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1874 EKKLKEviLQVDEERRNADQYKDQVEKGHLRLKQLKRQLEEAEEEASRA-NASRRRMQRELEDVTESAESMNREVTSLRN 1952
Cdd:pfam10174  599 DKKIAE--LESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREdNLADNSQQLQLEELMGALEKTRQELDATKA 676

                   ....*.
gi 1033370542 1953 RLSKVE 1958
Cdd:pfam10174  677 RLSSTQ 682
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
1071-1720 1.15e-03

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 44.02  E-value: 1.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1071 KEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEEL----RQALARKEAELQAA--LARVEDEAAQKNAVLKSLRELQA 1144
Cdd:PRK10246   192 QHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLtdeeKQLLTAQQQQQQSLnwLTRLDELQQEASRRQQALQQALA 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1145 QLAELQEDMesEKLARAKAEKQRRDLGEELEalktELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMR 1224
Cdd:PRK10246   272 AEEKAQPQL--AALSLAQPARQLRPHWERIQ----EQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQ 345
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1225 QRHTSALEE--------------------LSEQLEQSRRFKINLEKTKQALEGE-------NAEMQKEVKLLQAAKLESE 1277
Cdd:PRK10246   346 QSLNTWLAEhdrfrqwnnelagwraqfsqQTSDREQLRQWQQQLTHAEQKLNALpaitltlTADEVAAALAQHAEQRPLR 425
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1278 QRRKKLEGQVQELQLRagegeraKAELVERLVKLQNELDGVSGTLGS------------TESKTI----KLAKDLATVES 1341
Cdd:PRK10246   426 QRLVALHGQIVPQQKR-------LAQLQVAIQNVTQEQTQRNAALNEmrqrykektqqlADVKTIceqeARIKDLEAQRA 498
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1342 HLQDTQ--------ELLQEETRQKLNLS---SRVRQLEEEKAAMleqleeeEAAKANFSRQMQSLQQQvmetkkkLEEDa 1410
Cdd:PRK10246   499 QLQAGQpcplcgstSHPAVEAYQALEPGvnqSRLDALEKEVKKL-------GEEGAALRGQLDALTKQ-------LQRD- 563
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1411 gvaeaiEEARRRAAKDLESLSVRYEErvqACDKLEKGRTrLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLAEEKLIS 1490
Cdd:PRK10246   564 ------ESEAQSLRQEEQALTQQWQA---VCASLNITLQ-PQDDIQPWLDAQEEHERQLRLLSQRHELQGQIAAHNQQII 633
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1491 ARYAEERDRAEADAREKETKVLSLSRALEEA--LETREEMERQNKQLRAEMDDLVSskddvgknvhELERFKRALEQ--Q 1566
Cdd:PRK10246   634 QYQQQIEQRQQQLLTALAGYALTLPQEDEEAswLATRQQEAQSWQQRQNELTALQN----------RIQQLTPLLETlpQ 703
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1567 VQEMRAQMEELE-DELQATEDGKLRLEVNMQALKAQHERELQNRDDANDD-----KKKLLSKQVRELEAELDAERKQRAQ 1640
Cdd:PRK10246   704 SDDLPHSEETVAlDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQfdtalQASVFDDQQAFLAALLDEETLTQLE 783
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1641 ALagRKKLELDLQEAMAQLDAANKGRDEAGKQ----------LRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKN 1710
Cdd:PRK10246   784 QL--KQNLENQRQQAQTLVTQTAQALAQHQQHrpdgldltvtVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQ 861
                          730
                   ....*....|
gi 1033370542 1711 LEAELLQLQE 1720
Cdd:PRK10246   862 QQALMQQIAQ 871
PspA COG1842
Phage shock protein A [Transcription, Signal transduction mechanisms];
1611-1726 1.16e-03

Phage shock protein A [Transcription, Signal transduction mechanisms];


Pssm-ID: 224755 [Multi-domain]  Cd Length: 225  Bit Score: 42.69  E-value: 1.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1611 DANDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQ--------LDAANKGRDEAGKQL----RKLQA 1678
Cdd:COG1842     20 DKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARaekleekaELALQAGNEDLAREAleekQSLED 99
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1033370542 1679 QMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASE 1726
Cdd:COG1842    100 LAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAK 147
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1390-1647 1.18e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 43.56  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1390 RQMQSLQQQVMETKKKLEedagvaeAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVV 1469
Cdd:COG4942     59 DQRAKLEKQLKSLETEIA-------SLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNP 131
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1470 SALEKkqkkfdqMLAEEKLISARYAE-ERDRAEADAREKEtkvlSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDD 1548
Cdd:COG4942    132 PPALL-------VSPEDAQRSVRLAIyYGALNPARAERID----ALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAK 200
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1549 VGKNVHELERFKRALEQQVQEMRAQMEELedELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKLLSKQVRELE 1628
Cdd:COG4942    201 LAQLLEERKKTLAQLNSELSADQKKLEEL--RANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKP 278
                          250
                   ....*....|....*....
gi 1033370542 1629 AELDAERKQRAQALAGRKK 1647
Cdd:COG4942    279 TAPEKMLISSTGGFGALRG 297
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1222-1472 1.26e-03

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 43.47  E-value: 1.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1222 DMRQRHTSaLEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAK 1301
Cdd:COG4372     82 QLRALRTE-LGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQR 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1302 AELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVEshlQDTQELlqeETRQKlnlssRVRQLEEEKAAMLEQLEEE 1381
Cdd:COG4372    161 RQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIE---QEAQNL---ATRAN-----AAQARTEELARRAAAAQQT 229
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1382 EAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERV-QACDKLEKGRTRLQQELDDVTV 1460
Cdd:COG4372    230 AQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVrLRQQAAATQRGQVLAGAAQRVA 309
                          250
                   ....*....|..
gi 1033370542 1461 ALDQQRQVVSAL 1472
Cdd:COG4372    310 QAQAQAQAQAQL 321
Filament pfam00038
Intermediate filament protein;
1363-1642 1.27e-03

Intermediate filament protein;


Pssm-ID: 425436 [Multi-domain]  Cd Length: 313  Bit Score: 42.98  E-value: 1.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1363 RVRQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEA-IEEARRRAAKDLESLSVRYEERVQAC 1441
Cdd:pfam00038   19 KVRFLEQQNKDLETKISELRQKKGAEPSRLYSLYEREIRELRRQLDTLTVERArLQLELDNLRLAAEDFRQKYEDELNLR 98
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1442 DKLEKGRTRLQQELDDVTVA-LDQQRQVVSALEkkQKKFDQMLAEEKL--ISARYAEERDRAEADAREKetkvLSLSRAL 1518
Cdd:pfam00038   99 QSAEADIVGLRKDLDEATLArVDLEMKIESLKE--ELAFLKKNHEEEVreLQSQVSDTQVNVEMDAARK----LDLTSAL 172
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1519 EEaleTREEMERQNKQLRAEMDDLVSSK-----DDVGKNVHELerfkRALEQQVQEMRAQMEELEDELQATEDGKLRLEV 1593
Cdd:pfam00038  173 AE---IRAQYEEIAEKNREEAEEWYQSKleelqQAAARNGDAL----RSAKEEITELRRQIQSLEIELQSLKKQKASLER 245
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 1033370542 1594 NMQALKAQHERELQNrddanddkkklLSKQVRELEAELDAERKQRAQAL 1642
Cdd:pfam00038  246 QLAETEERYELQLAD-----------YQELISELEAELQQIRQEMARQL 283
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1545-1965 1.30e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 43.90  E-value: 1.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1545 SKDDVGKNVHELERFKRA---LEQQVQEMRAQMEELEDELQATEDGKLRLEvNMQALKAQHERELqnrddanddkkKLLS 1621
Cdd:PRK03918   146 SREKVVRQILGLDDYENAyknLGEVIKEIKRRIERLEKFIKRTENIEELIK-EKEKELEEVLREI-----------NEIS 213
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1622 KQVRELEAELDAERKQRaqalagrkkleLDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEaraareeifiqS 1701
Cdd:PRK03918   214 SELPELREELEKLEKEV-----------KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE-----------L 271
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1702 RESEKKLKNLEAELLQLQEDLAASERAKRqaqqERDDLADELANGNSGKSALLDEKRHLEARIgqleeeldeeqSNMELL 1781
Cdd:PRK03918   272 KKEIEELEEKVKELKELKEKAEEYIKLSE----FYEEYLDELREIEKRLSRLEEEINGIEERI-----------KELEEK 336
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1782 NDRYRKLSMQVETLTTELGAERSFSQKTENARQQLERQNKdLRAKLGEMdssvkskykmaiaTLESKVAQLEEqleqesr 1861
Cdd:PRK03918   337 EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER-LKKRLTGL-------------TPEKLEKELEE------- 395
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1862 erilsgklVRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLK-------RQLEEAEEEA--SRANASRRRMQRE 1932
Cdd:PRK03918   396 --------LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgRELTEEHRKEllEEYTAELKRIEKE 467
                          410       420       430
                   ....*....|....*....|....*....|...
gi 1033370542 1933 LEDVTESAESMNREVTSLRNRLSKVERRQRKRT 1965
Cdd:PRK03918   468 LKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
1083-1604 1.38e-03

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 428594 [Multi-domain]  Cd Length: 562  Bit Score: 43.48  E-value: 1.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1083 KRKL-DGEAGDLQEQVAELQQQLEELRQALARKEAELQAAL------------ARVEDEAAQKNAVLKSLRelqaqLAEL 1149
Cdd:pfam05701   36 RRKLvELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKrlieelklnlerAQTEEAQAKQDSELAKLR-----VEEM 110
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1150 QEDMESEKLARAKAE----KQRRDLG-EELEALKTELEDT---LDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVL 1221
Cdd:pfam05701  111 EQGIADEASVAAKAQlevaKARHAAAvAELKSVKEELESLrkeYASLVSERDIAIKRAEEAVSASKEIEKTVEELTIELI 190
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1222 DMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQlragegeRAK 1301
Cdd:pfam05701  191 ATKESLESAHAAHLEAEEHRIGAALAREQDKLNWEKELKQAEEELQRLNQQLLSAKDLKSKLETASALLL-------DLK 263
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1302 AELVERLV-KLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEE 1380
Cdd:pfam05701  264 AELAAYMEsKLKEEADGEGNEKKTSTSIQAALASAKKELEEVKANIEKAKDEVNCLRVAAASLRSELEKEKAELASLRQR 343
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1381 EEAAKANFSrqmqSLQQQVMETKKKLEEdagVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTV 1460
Cdd:pfam05701  344 EGMASIAVS----SLEAELNRTKSEIAL---VQAKEKEAREKMVELPKQLQQAAQEAEEAKSLAQAAREELRKAKEEAEQ 416
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1461 ALDQQRQVVSALEKKQKKFDQMLAEEKL-ISARYAEERDRAEADAREKETKVLSLSRALEEALE----TREEMERQNKQL 1535
Cdd:pfam05701  417 AKAAASTVESRLEAVLKEIEAAKASEKLaLAAIKALQESESSAESTNQEDSPRGVTLSLEEYYElskrAHEAEELANKRV 496
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542 1536 RAEMDDLVSSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDelqaTEDGKLRLEVNMQALKAQHER 1604
Cdd:pfam05701  497 AEAVSQIEEAKESELRSLEKLEEVNREMEERKEALKIALEKAEK----AKEGKLAAEQELRKWRAEHEQ 561
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
1319-1961 1.45e-03

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 43.68  E-value: 1.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1319 SGTLGSTESktIKLAKDLATVESHL---QDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAkanfSRQMQSL 1395
Cdd:COG4717    151 SGTSGSPAS--TKLLEVLNKEADSLykpSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAE----HARLAEL 224
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1396 QQQVMETKKKLEEDAGVAEaiEEARRRAAKDLES-LSVRYEERVQ----ACDKLEKGRTRLQQ---ELDDVTVAL----D 1463
Cdd:COG4717    225 RSELRADRDHIRALRDAVE--LWPRLQEWKQLEQeLTRRREELATfprdGVLRLEKREAHLQKteaEIDALLVRLaelkD 302
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1464 QQRQVVSALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEaleTREEMERQNKQLRAEMDDLV 1543
Cdd:COG4717    303 LASQLIPAKEAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDKEEAAGNGFEA---ERVHDLRSLECMLRYQSSQR 379
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1544 SSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQAL--KAQHERELQNRDDANDDKKKLLS 1621
Cdd:COG4717    380 ELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVidKEEVCNLYDRRDTAWQKQRFLRE 459
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1622 KQ---------------VRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDE---AGKQLRKLQAQMK-- 1681
Cdd:COG4717    460 KQtaferqktehtkiiaLRLAGMLLVALSRLLTSLIFQIIFAVAQIVFLSAEIKSSSRAVREekaAVTDIPEELARLLit 539
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1682 ELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELangnsGKSALLDEKRHLE 1761
Cdd:COG4717    540 DELPELAVDLLVQSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDEL-----GLSRELSPEQQLD 614
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1762 ArigqleeelDEEQSNMELLNDRYRKLSMQVETLTTELgaeRSFSQKTENARQQLERQNKDL-----RAKLGEMDSSVKS 1836
Cdd:COG4717    615 I---------LSTMKDLKKLMQKKAELTHQVARLREEQ---AAFEERVEGLLAVLEAQFIDLstlfcVQRLRVAAELQKE 682
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1837 KYKMAIATLESKVAQLEEQLEQESRerilsgkLVRRAEKKLKEVILQVDEER-----RNADQYKDQVEKGHLRLKQLKRq 1911
Cdd:COG4717    683 EARLALEGNIERTKELNDELRAELE-------LHRKEILDLFDCGTADTEDAfreaaREEQQLTQRESRLESLEAQLEG- 754
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1912 LEEAEEEASRANASRRRMQRELEDVTESAESMNREVTSLRNRLSKVERRQ 1961
Cdd:COG4717    755 VAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQI 804
Apolipoprotein pfam01442
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ...
1092-1240 1.50e-03

Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.


Pssm-ID: 426264 [Multi-domain]  Cd Length: 170  Bit Score: 41.49  E-value: 1.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1092 DLQEQVAELQQQLEELRQALARKEAELQAALArvedeaaqknavlKSLRELQAQLAELQEDMesEKLARAKAEKQRRDLG 1171
Cdd:pfam01442   29 ETEALRERLQKDLEEVRAKLEPYLEELQAKLQ-------------QNVEELRQRLEPYTEEL--RKRLNADAEELQEKLA 93
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1033370542 1172 EELEALKTELEDTLDSTAAQ-----QELRSKREQEVTELKKTIEEEVKVHEAQVldmrqrhTSALEELSEQLEQ 1240
Cdd:pfam01442   94 PYGEELRERLEQNVDALRARlapyaEELRQKLAERLEELKESLAPYAEEVQAQL-------SQRLQELREKLEP 160
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
966-1166 1.73e-03

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 43.09  E-value: 1.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  966 QLQGDKKKMQQHVQDLEEQLEEEEAARQKLQL---EKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMA 1042
Cdd:COG4372     82 QLRALRTELGTAQGEKRAAETEREAARSELQKarqEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRR 161
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1043 EEEEKVKSLSKLRNKYEAVMADMEDRlkkeekgRQELEKLKRKLDGEAGDLQEQVAELQQQLEEL------RQALARKEA 1116
Cdd:COG4372    162 QLEAQAQSLQASQKQLQASATQLKSQ-------VLDLKLRSAQIEQEAQNLATRANAAQARTEELarraaaAQQTAQAIQ 234
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1117 ELQAALARVEDEAAQKNAVLKSlRELQAQLAELQEDMESEKLARAKAEKQ 1166
Cdd:COG4372    235 QRDAQISQKAQQIAARAEQIRE-RERQLQRLETAQARLEQEVAQLEAYYQ 283
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
1077-1303 1.78e-03

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 42.91  E-value: 1.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1077 QELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAvlkslrELQAQLAELQEDMESE 1156
Cdd:TIGR02794   50 QQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQA------EQAAKQAEEKQKQAEE 123
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1157 KLARAKAEKQRRdlgEELEALKTELEDtldstAAQQELRSKREQEVTELKKTIEEEVKVHEAQvldmrqrhTSALEELSE 1236
Cdd:TIGR02794  124 AKAKQAAEAKAK---AEAEAERKAKEE-----AAKQAEEEAKAKAAAEAKKKAEEAKKKAEAE--------AKAKAEAEA 187
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542 1237 QLEQsrrfKINLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAE 1303
Cdd:TIGR02794  188 KAKA----EEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQG 250
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
884-1471 1.83e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 43.34  E-value: 1.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  884 AVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFaEAEEmrarLAARKQELEDILHELESRVEEEEER 963
Cdd:COG3096    505 GPDQRHLAEQVQPLRMRLSELEQRLRQQQSAERLLADFCKRQGKNL-DAEE----LEALHQELEALIESLSDSVSNAREQ 579
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  964 CQQLQGDKKKMQQHVQDLEEQLEEEEAARQKL-QLEKVSTEAklkkMEEDLLVLEDQNSKLHKERKLMEER--LSEFTSH 1040
Cdd:COG3096    580 RMALRQEQEQLQSRIQSLMQRAPVWLAAQNALeQLSEQSGEE----FTDSQDVTEYMQQLLEREREATVERdeLGARKNA 655
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1041 MAEEEEKVKS--------LSKLRNKYEAVM-ADMEDRLKKEEK-------GRQELEKLKRKLDGeagdlqeqVAELQQQL 1104
Cdd:COG3096    656 LDEEIERLSQpggsedqrLNALAERFGGVLlSEIYDDVTIEDApyfsalyGPSRHAIVVPDLSQ--------VKEHLEGL 727
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1105 EELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEdmeSEKLARAKAEKQrrdlgeeLEALKTELEDT 1184
Cdd:COG3096    728 TDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPE---IPLFGRAAREQR-------LESLHAERDVL 797
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1185 ldstAAQQELRSKREQEVTELKKTIEEEVKVH---------EAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQAL 1255
Cdd:COG3096    798 ----SERHATLSFDVQKTQRLHQAFSRFIGSHlavafeadpEAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGV 873
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1256 EGENaemqkevKLLQAAKLESEQrrkKLEGQVQELQLRAGEGERAKAELVERLVKLqNELDGVSGTLGSTESKTIKLAKD 1335
Cdd:COG3096    874 TALN-------RLIPQLNLLADE---SLADRVEEIRERLDEAQEAARFIQQHGNTL-SKLEPIASVLQSDPEQFEQLKED 942
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1336 LATVESHLQDTQ----------------------ELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEEEAAKANFSRQMQ 1393
Cdd:COG3096    943 YAQAQQMQRQARqqafaltevvqrrahfsysdsaEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLA 1022
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1394 SLQQQVMETKKKLEE------DAGV---AEAIEEARRRAAKDLESLSVRYEERVQacdkLEKGRTRLQQELDDVTVAL-- 1462
Cdd:COG3096   1023 SLKSSYDTKKELLNElqqelqDIGVradSGAEERARIRRDELHAQLSTNRSRRNQ----LEKQLTFCEAEMDNLTRKLrk 1098
                          650
                   ....*....|....*
gi 1033370542 1463 ------DQQRQVVSA 1471
Cdd:COG3096   1099 lerdyfEMREQVVTA 1113
HMMR_N pfam15905
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ...
990-1242 1.92e-03

Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


Pssm-ID: 435008 [Multi-domain]  Cd Length: 329  Bit Score: 42.50  E-value: 1.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  990 AARQKLQLEKVSTEAKLKKMEeDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRL 1069
Cdd:pfam15905   53 ARKVKSLELKKKSQKDLKESK-DQKELEKEIRALVQERGEQDKRLQALEEELEKVEAKLNAAVREKTSLSASVASLEKQL 131
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1070 ------------KKEEKGRQ--------ELEKLKRKLDG---EAGDLQEQVAELQQQLEELRQALARKEAELQAALARVE 1126
Cdd:pfam15905  132 leltrvnellkaKFSEDGTQkkmsslsmELMKLRNKLEAkmkEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTE 211
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1127 DEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEdtldstaAQQELRSKREQEVTELK 1206
Cdd:pfam15905  212 KEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIAQLEELLKEKNDEIESLKQSLE-------EKEQELSKQIKDLNEKC 284
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1033370542 1207 KTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSR 1242
Cdd:pfam15905  285 KLLESEKEELLREYEEKEQTLNAELEELKEKLTLEE 320
ERM pfam00769
Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at ...
1555-1693 2.33e-03

Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins.


Pssm-ID: 425860 [Multi-domain]  Cd Length: 247  Bit Score: 41.85  E-value: 2.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1555 ELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEvnMQALKAQHERElqnrddanddkkkLLSKQVRELEAELDAE 1634
Cdd:pfam00769    3 EAEREKQELEERLKQYEEETRKAQEELEESEETAELLE--EKLRVAEEEAE-------------LLEQKAQEAEEEKERL 67
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542 1635 RKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAA 1693
Cdd:pfam00769   68 EESAEMEAEEKEQLERELREAQEEVARLEEESERKEEEAERLQEELEEAREEEEEAKEK 126
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1270-1484 2.35e-03

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 42.70  E-value: 2.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1270 QAAKLESEQRRKKLEGQVQELQLRAGEGERAKAElvERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQEL 1349
Cdd:COG4372     75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAAR--SELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR 152
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1350 LQeetrqklNLSSRVRQLEEEKAAMLeqleeeeaakaNFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLES 1429
Cdd:COG4372    153 LK-------TLAEQRRQLEAQAQSLQ-----------ASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQA 214
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1033370542 1430 LSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKKQKKFDQMLA 1484
Cdd:COG4372    215 RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQA 269
Caldesmon pfam02029
Caldesmon;
993-1187 2.40e-03

Caldesmon;


Pssm-ID: 426572 [Multi-domain]  Cd Length: 490  Bit Score: 42.55  E-value: 2.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  993 QKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKE 1072
Cdd:pfam02029  140 EKDDKKAVPKEEEEEEDAKTEEEEEEEEEEKKVSKKKKEKLKDEYTSKVFLDQKKGHPEQKSQNGALEEVTSMTVKLKRT 219
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1073 EK-GRQELEKLKRKLDGEAgdlqeqVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQE 1151
Cdd:pfam02029  220 ERtFSQKSLVAEDEEEGAA------FLEAEQKLEELRRRRQEKESQEFEKLRQKQQEAELELEELKKKREERRKILEEEE 293
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1033370542 1152 DM--ESEKLARAKAEKQRRDLGEELEALKTE-------LEDTLDS 1187
Cdd:pfam02029  294 QRrkQEEAERKAREEEEKRRMKEEIERRRAEaaekrqkMEDTSSA 338
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
901-1670 2.60e-03

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 42.87  E-value: 2.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  901 LKELENKYQQLS-EEKTILAEQLQAE---------TELFAEAEEMRARLAARKQELEDilhelesrveeeeercqqlqgd 970
Cdd:PRK10246   218 VQSLTASLQVLTdEEKQLLTAQQQQQqslnwltrlDELQQEASRRQQALQQALAAEEK---------------------- 275
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  971 kkkmqqhvqdleeqleeeeAARQKLQLEKVSTEAKLKKMEEDllvLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKS 1050
Cdd:PRK10246   276 -------------------AQPQLAALSLAQPARQLRPHWER---IQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHH 333
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1051 LSKLRNKYEAVMADMEDRLKKEEKGR---QELEKLKRKLDGEAGDlQEQVAELQQQLEELRQALArkeAELQAALARVED 1127
Cdd:PRK10246   334 AAKQSAELQAQQQSLNTWLAEHDRFRqwnNELAGWRAQFSQQTSD-REQLRQWQQQLTHAEQKLN---ALPAITLTLTAD 409
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1128 EAAQKNAVLKSLRELQAQLAELQEDMeseklarAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKK 1207
Cdd:PRK10246   410 EVAAALAQHAEQRPLRQRLVALHGQI-------VPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKT 482
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1208 TIEEEVKVHEaqvldmrqrhtsaLEELSEQLEQSRRFKINLEKTKQALEGENAeMQKEVKLLQAAKLESEQRRKKLE--- 1284
Cdd:PRK10246   483 ICEQEARIKD-------------LEAQRAQLQAGQPCPLCGSTSHPAVEAYQA-LEPGVNQSRLDALEKEVKKLGEEgaa 548
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1285 --GQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIKLAKDLATVESHLQDTQELlqeetRQKLNLSS 1362
Cdd:PRK10246   549 lrGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQLRLL-----SQRHELQG 623
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1363 rvrQLEEEKAAMLEQLEEEEAAKANFSRQMQSLQQQVMETKkklEEDAGVAEAIEEARRRAAKDLESLSVRyeERVQACD 1442
Cdd:PRK10246   624 ---QIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQED---EEASWLATRQQEAQSWQQRQNELTALQ--NRIQQLT 695
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1443 K-LEKGRTRLQQELDDVTVALDQQRQVVS---ALEKKQKKFDQMLAEEKlisARYAEerdraeadAREKETKVLSLSRal 1518
Cdd:PRK10246   696 PlLETLPQSDDLPHSEETVALDNWRQVHEqclSLHSQLQTLQQQDVLEA---QRLQK--------AQAQFDTALQASV-- 762
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1519 eealetreeMERQNKQLRAEMDDlvsskddvgKNVHELERFKRALEQQVQEMRAQMEE----LEDELQATEDGkLRLEVN 1594
Cdd:PRK10246   763 ---------FDDQQAFLAALLDE---------ETLTQLEQLKQNLENQRQQAQTLVTQtaqaLAQHQQHRPDG-LDLTVT 823
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542 1595 MQALKAQ-HERELQNRDdaNDDKKKLLSKQVREleaelDAERKQRAQALagrkkleldlqeaMAQLDAANKGRDEAG 1670
Cdd:PRK10246   824 VEQIQQElAQLAQQLRE--NTTRQGEIRQQLKQ-----DADNRQQQQAL-------------MQQIAQATQQVEDWG 880
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
1483-1640 2.74e-03

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 41.58  E-value: 2.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1483 LAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHEL--ERFK 1560
Cdd:COG1579     12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVkdEREL 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1561 RALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQNRDDAnddkKKLLSKQVRELEAELDAERKQRAQ 1640
Cdd:COG1579     92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA----EARLEEEVAEIREEGQELSSKREE 167
YloA COG1293
Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains ...
1003-1165 2.78e-03

Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 224212 [Multi-domain]  Cd Length: 564  Bit Score: 42.38  E-value: 2.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1003 EAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKL 1082
Cdd:COG1293    292 EKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKK 371
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1083 KRKLDGEAGDLQEQVAELQQQLEELRQALarkeaelqaalarvedEAAQKNAVLKSLRELQAQLAELQEdMESEKLARAK 1162
Cdd:COG1293    372 YKKLKGAKVNLDRQLSELKEAIAYYESAK----------------TALEKAEGKKAIEEIREELIEEGL-LKSKKKKRKK 434

                   ...
gi 1033370542 1163 AEK 1165
Cdd:COG1293    435 KEW 437
PRK11281 PRK11281
mechanosensitive channel MscK;
1057-1226 2.83e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 42.98  E-value: 2.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1057 KYEAVMADMEDRL----KKEEKGRQELEKLKRKLDGEAG---------DLQEQVAELQQQLEELRQALA----------- 1112
Cdd:PRK11281    77 RQKEETEQLKQQLaqapAKLRQAQAELEALKDDNDEETRetlstlslrQLESRLAQTLDQLQNAQNDLAeynsqlvslqt 156
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1113 ---RKEAELQAALARVEdeaaQKNAVLKSLRELQAQL-AELQEDMESE-KLARAKAEKQRRDLgeeleALKTELEDTLDS 1187
Cdd:PRK11281   157 qpeRAQAALYANSQRLQ----QIRNLLKGGKVGGKALrPSQRVLLQAEqALLNAQNDLQRKSL-----EGNTQLQDLLQK 227
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1033370542 1188 -----TAAQQELRSKRE--QEVTELKKTIEEEVKVHEAQVLDMRQR 1226
Cdd:PRK11281   228 qrdylTARIQRLEHQLQllQEAINSKRLTLSEKTVQEAQSQDEAAR 273
RmuC COG1322
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ...
1116-1294 2.84e-03

DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];


Pssm-ID: 224241 [Multi-domain]  Cd Length: 448  Bit Score: 42.38  E-value: 2.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1116 AELQAALARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRdLGEELEALKTELEDTLDSTAAQQEL- 1194
Cdd:COG1322     18 AFIRQLLLRLGRLEQMLGELAAVLEQLLLLLAFRAEAEQLRTFARSLQALNLE-LIQELNELKARLQQQLLQSREQLQLl 96
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1195 ---RSKREQEVTELKKTIEEEV--KVHE------AQVLDMRQRHTSALEELSEQL--EQSRRFKINLEKTKQALeGENAE 1261
Cdd:COG1322     97 iesLAQLSSEFQELANEIFEELnrRLAElnqqnlKQLLKPLREVLEKFREQLEQRihESAEERSTLLEEIDRLL-GEIQQ 175
                          170       180       190
                   ....*....|....*....|....*....|...
gi 1033370542 1262 MQKEVKLLQAAkleseQRRKKLEGQVQELQLRA 1294
Cdd:COG1322    176 LAQEAGNLTAA-----LKGNKTRGNWGEVQLER 203
ATG16 pfam08614
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ...
1077-1173 2.89e-03

Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.


Pssm-ID: 430106 [Multi-domain]  Cd Length: 176  Bit Score: 40.68  E-value: 2.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1077 QELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAEL---QAALARVEDEAAQKNAVLKS----LRELQAQLAEL 1149
Cdd:pfam08614   53 QSLEQLLAQLREELAELYRSRGELAQQLVDLNEELQELEKKLredERRLAELEAERAQLEEKLRDreeeLREKRKLNQDL 132
                           90       100
                   ....*....|....*....|....
gi 1033370542 1150 QEDMESEKLARAKAEKQRRDLGEE 1173
Cdd:pfam08614  133 QDELVALQLQLNMAEEKLRKLEKE 156
PRK12704 PRK12704
phosphodiesterase; Provisional
1167-1308 2.93e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.46  E-value: 2.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1167 RRDLGEELEALKTELEDTLDstAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRqrhtsalEELSEQLEQSRRFKI 1246
Cdd:PRK12704    26 KKIAEAKIKEAEEEAKRILE--EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERR-------NELQKLEKRLLQKEE 96
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1033370542 1247 NLEKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLEG----QVQELQLRAG-EGERAKAELVERL 1308
Cdd:PRK12704    97 NLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEElieeQLQELERISGlTAEEAKEILLEKV 163
CCDC154 pfam15450
Coiled-coil domain-containing protein 154; CCDC154 is an osteopetrosis-related protein that ...
1067-1319 2.94e-03

Coiled-coil domain-containing protein 154; CCDC154 is an osteopetrosis-related protein that suppresses cell proliferation by inducing G2/M arrest.


Pssm-ID: 434726 [Multi-domain]  Cd Length: 520  Bit Score: 42.53  E-value: 2.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1067 DRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQK----NAVLKSLreL 1142
Cdd:pfam15450  115 ERKGAEQEANLRLTKLTGMLKQEEQGREAACSALQKSQEEASQKVDHEVARMQAQVTKLGEEMSLRflkrEAKLCSF--L 192
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1143 QAQLAELQEDMESEKLARAKAEKQRRdlgEELEALKTELEDTLDSTAaqQELRSKREQEVTELKktiEEEVKVHEAQVld 1222
Cdd:pfam15450  193 QKSFLALEKRMKASESTRLKAESSLR---EELEGKWQKLQELTEERL--RALTGQLEQEEGHLL---EQCRGLDEAVV-- 262
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1223 mrqRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAE-----MQKEvklLQAAKLESEQRRKKLEGQVQELQLRAGEG 1297
Cdd:pfam15450  263 ---QLTKFVRQNQVSLNRVLLAEQKARDAKGQLEESRAGelasyMQES---LEAMQLAGDLARRETQAALELLQEKSQVL 336
                          250       260
                   ....*....|....*....|..
gi 1033370542 1298 ERAKAELVERLVKLQNELDGVS 1319
Cdd:pfam15450  337 EHSVAELVTQLKDLSDHFLALS 358
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
1553-1941 3.04e-03

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 428594 [Multi-domain]  Cd Length: 562  Bit Score: 42.32  E-value: 3.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1553 VHELERfKRALEQQVQEMRAQMEELEDELQATEDGKlrlevnMQALKaqherELQNRDDANDDKKKLLSK-QVRELEAEL 1631
Cdd:pfam05701   31 IQTVER-RKLVELELEKVQEEIPEYKKQSEAAEAAK------AQVLE-----ELESTKRLIEELKLNLERaQTEEAQAKQ 98
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1632 DAERKQ-RAQALAGRKKLELDLqEAMAQLDAANKGRDEAGKQLRKLQAQMKELWRE----VEEARAAR---EEIFIQSRE 1703
Cdd:pfam05701   99 DSELAKlRVEEMEQGIADEASV-AAKAQLEVAKARHAAAVAELKSVKEELESLRKEyaslVSERDIAIkraEEAVSASKE 177
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1704 SEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLA-----DELANGNSGKSAlLDEKRHLEARIGQLEEELDEEQSNM 1778
Cdd:pfam05701  178 IEKTVEELTIELIATKESLESAHAAHLEAEEHRIGAAlareqDKLNWEKELKQA-EEELQRLNQQLLSAKDLKSKLETAS 256
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1779 ELLNDRYRKLSMQVETLTTELGAERSFSQKTEN--------ARQQLERQNKDL-RAK-----LGEMDSSVKS---KYKMA 1841
Cdd:pfam05701  257 ALLLDLKAELAAYMESKLKEEADGEGNEKKTSTsiqaalasAKKELEEVKANIeKAKdevncLRVAAASLRSeleKEKAE 336
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1842 IATLESK-------VAQLEEQLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQYKDQVEKGHLRLKQLKRQLEE 1914
Cdd:pfam05701  337 LASLRQRegmasiaVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQAAQEAEEAKSLAQAAREELRKAKEEAEQ 416
                          410       420
                   ....*....|....*....|....*..
gi 1033370542 1915 AEEEASRANASRRRMQRELEDVTESAE 1941
Cdd:pfam05701  417 AKAAASTVESRLEAVLKEIEAAKASEK 443
mukB PRK04863
chromosome partition protein MukB;
1600-1938 3.06e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.64  E-value: 3.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1600 AQHERELQNRDDANDDKKKLLSKQVRELEAE---LDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDEAGKqLRKL 1676
Cdd:PRK04863   275 MRHANERRVHLEEALELRRELYTSRRQLAAEqyrLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEK-IERY 353
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1677 QAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQEDLAASERA----------KRQAQQerddlADELANG 1746
Cdd:PRK04863   354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAldvqqtraiqYQQAVQ-----ALERAKQ 428
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1747 NSGKSALLDEKrhlearigqleeeldeeqsnmelLNDRYRKLSMQVETLTTELgaeRSFSQK---TENARQQLERQNKDL 1823
Cdd:PRK04863   429 LCGLPDLTADN-----------------------AEDWLEEFQAKEQEATEEL---LSLEQKlsvAQAAHSQFEQAYQLV 482
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1824 RAKLGEMDSSV-KSKYKMAIATLESKVAQLE--EQLEQESRERILSGKLVRRAEKKLKEVILQVDEERRNADQYKDQVEk 1900
Cdd:PRK04863   483 RKIAGEVSRSEaWDVARELLRRLREQRHLAEqlQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQE- 561
                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 1033370542 1901 ghlrlkQLKRQLEEAEEEASRANASRRRMQRELEDVTE 1938
Cdd:PRK04863   562 ------ELEARLESLSESVSEARERRMALRQQLEQLQA 593
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1807-1963 3.08e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 42.75  E-value: 3.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1807 QKTENARQQLERQnKDLRAKLGEMDSSVKSKYKMA----IATLESKVAQLEEQLEQESRERILSGKLVRRAEKKLKEVIL 1882
Cdd:TIGR02169  201 ERLRREREKAERY-QALLKEKREYEGYELLKEKEAlerqKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1883 QVDEERRN-ADQYKDQVEKGHLRLKQLKR-------QLEEAEEEASRANASRRRMQRELEDVTESAESMNREVTSLRNRL 1954
Cdd:TIGR02169  280 KIKDLGEEeQLRVKEKIGELEAEIASLERsiaekerELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359

                   ....*....
gi 1033370542 1955 SKVERRQRK 1963
Cdd:TIGR02169  360 AELKEELED 368
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1628-2014 3.09e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.42  E-value: 3.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1628 EAELDAERKQRAQALAGRKKLEldlqeamaqldAANKGRDEAGKQLRKLQAQMKELWREVEearaaREEIFIQSRESEKK 1707
Cdd:pfam17380  298 QERLRQEKEEKAREVERRRKLE-----------EAEKARQAEMDRQAAIYAEQERMAMERE-----RELERIRQEERKRE 361
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1708 LKNLEAELLQLQ-EDLAASERAKRQAQQERDDLADELANGNsgKSALLDEKRhlEARIGQLEEELDEEQSNMEllNDRYR 1786
Cdd:pfam17380  362 LERIRQEEIAMEiSRMRELERLQMERQQKNERVRQELEAAR--KVKILEEER--QRKIQQQKVEMEQIRAEQE--EARQR 435
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1787 KLSMQVETLTTELGAERSFSQKTENARQQLERQNKDLRAKLGEMDSSvkskykmaiatleskvaQLEEQLEQESRERILs 1866
Cdd:pfam17380  436 EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE-----------------KRDRKRAEEQRRKIL- 497
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1867 gklvrraEKKLKEVILQVDEERRNADQYKDQVEKghlrlkqlkRQLEEAEEEASRANASRRRMQRELEDVTESAESMnRE 1946
Cdd:pfam17380  498 -------EKELEERKQAMIEEERKRKLLEKEMEE---------RQKAIYEEERRREAEEERRKQQEMEERRRIQEQM-RK 560
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1947 VTSLRNRLSKVER------------RQRKRTPLSFTTRTVRQVFRLDgvsDEETEDPESDSPSTNHKPLTPSQGPPQPAT 2014
Cdd:pfam17380  561 ATEERSRLEAMEReremmrqiveseKARAEYEATTPITTIKPIYRPR---ISEYQPPDVESHMIRFTTQSPEWATPSPAT 637
PRK04778 PRK04778
septation ring formation regulator EzrA; Provisional
1085-1308 3.35e-03

septation ring formation regulator EzrA; Provisional


Pssm-ID: 179877 [Multi-domain]  Cd Length: 569  Bit Score: 42.13  E-value: 3.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1085 KLDGEAGDLQEQVAELQQQLEELRqaLARKEAELQAALARVED-------EAAQKNAVLKSLRELQAQLAELQEDME--S 1155
Cdd:PRK04778   253 DIEKEIQDLKEQIDENLALLEELD--LDEAEEKNEEIQERIDQlydilerEVKARKYVEKNSDTLPDFLEHAKEQNKelK 330
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1156 EKLAR--------AKAEKQRRDLGEELEALKTELEDTLDSTAAQQ----ELRSKREQEVTELKKTIEEEVKVHEAqVLDM 1223
Cdd:PRK04778   331 EEIDRvkqsytlnESELESVRQLEKQLESLEKQYDEITERIAEQEiaysELQEELEEILKQLEEIEKEQEKLSEM-LQGL 409
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1224 RQRHTSA---LEELSEQLEQSRRF--KINL----EKTKQALEGENAEMQKEVKLLQAAKLESEQRRKKLE---GQVQELQ 1291
Cdd:PRK04778   410 RKDELEArekLERYRNKLHEIKRYleKSNLpglpEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEeatEDVETLE 489
                          250
                   ....*....|....*..
gi 1033370542 1292 LRAGEgERAKAELVERL 1308
Cdd:PRK04778   490 EETEE-LVENATLTEQL 505
PRK12705 PRK12705
hypothetical protein; Provisional
1026-1178 3.66e-03

hypothetical protein; Provisional


Pssm-ID: 237178 [Multi-domain]  Cd Length: 508  Bit Score: 42.00  E-value: 3.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1026 ERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEavmadMEDRLKKEEKGRqELEKLKRK---LDGEAGDLqeqvAELQQ 1102
Cdd:PRK12705    36 ERILQEAQKEAEEKLEAALLEAKELLLRERNQQR-----QEARREREELQR-EEERLVQKeeqLDARAEKL----DNLEN 105
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1103 QLEELRQALARKEAELQAALARVEDEAAQKnAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALK 1178
Cdd:PRK12705   106 QLEEREKALSARELELEELEKQLDNELYRV-AGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQN 180
46 PHA02562
endonuclease subunit; Provisional
1561-1760 3.67e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 42.31  E-value: 3.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1561 RALEQQVQEMRAQMEELEDELQATEDgklrLEVNMQALKAQHERELQNRDDANDDKKKLLSKQVRELEAEL---DAERKQ 1637
Cdd:PHA02562   177 RELNQQIQTLDMKIDHIQQQIKTYNK----NIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELlnlVMDIED 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1638 RAQALAGRKKLELDLQEAMAQLDAANK-------------GRDEAGKQLRKLQAQMKELWREVEEARAAREE---IFIQS 1701
Cdd:PHA02562   253 PSAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctqQISEGPDRITKIKDKLKELQHSLEKLDTAIDEleeIMDEF 332
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542 1702 RESEKKLKNLEAELLQLQEDLAASERAKRQAQQERDDLADELANGNSGKSALLDEKRHL 1760
Cdd:PHA02562   333 NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391
PRK12705 PRK12705
hypothetical protein; Provisional
1475-1638 3.69e-03

hypothetical protein; Provisional


Pssm-ID: 237178 [Multi-domain]  Cd Length: 508  Bit Score: 42.00  E-value: 3.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1475 KQKKFDQMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVH 1554
Cdd:PRK12705    26 KKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLEN 105
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1555 ELERFKRALEQQVQEMRAQMEELEDELQatEDGKLRLEVNMQALKAQHERELqnrddaNDDKKKLLSKQvrELEAELDAE 1634
Cdd:PRK12705   106 QLEEREKALSARELELEELEKQLDNELY--RVAGLTPEQARKLLLKLLDAEL------EEEKAQRVKKI--EEEADLEAE 175

                   ....
gi 1033370542 1635 RKQR 1638
Cdd:PRK12705   176 RKAQ 179
MscK COG3264
Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];
1107-1280 3.73e-03

Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225803 [Multi-domain]  Cd Length: 835  Bit Score: 42.37  E-value: 3.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1107 LRQALARKEAELqaalarVEDEAAQKNAVLKSLRELQAQL-AELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTL 1185
Cdd:COG3264      8 VLQELLQSRREL------LTAESAQLEAALQLLQEAVNSKrQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERL 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1186 DSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTsALEELSEQLEQSRRFKINLEktKQALEGENAEMQKE 1265
Cdd:COG3264     82 NALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQ-QLGPLPEAGQPQEQFEVTQE--RDALQAEKAYINAL 158
                          170
                   ....*....|....*
gi 1033370542 1266 VKllQAAKLESEQRR 1280
Cdd:COG3264    159 EG--QAEQLTAEVRD 171
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
1122-1647 3.88e-03

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227596 [Multi-domain]  Cd Length: 4600  Bit Score: 42.68  E-value: 3.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1122 LARVEDEAAQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDstaaQQELRSKREQE 1201
Cdd:COG5271   3840 LANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLN----EKLWDEPNEED 3915
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1202 VTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQsrrfkinlektkqalegENAEMQKEVkllqaakleseqrrk 1281
Cdd:COG5271   3916 LLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKE-----------------DEEEMSDDV--------------- 3963
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1282 kleGQVQELQLRAGEGERAKAelverlvklqneldgvsgtlgsTESKTIKLAKDLATVESHlqdtqellqEETRQKLNLS 1361
Cdd:COG5271   3964 ---GIDDEIQPDIQENNSQPP----------------------PENEDLDLPEDLKLDEKE---------GDVSKDSDLE 4009
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1362 SrvrqleeekaaMLEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESlsvrYEERVQAC 1441
Cdd:COG5271   4010 D-----------MDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDG----FEENVQEN 4074
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1442 DKLEKGRTRLQQELDDVTVALDQqrqvvsALEKKQKkfdqMLAEEKLISARYAEERDRAEADAREKETKVLSLSRALEEA 1521
Cdd:COG5271   4075 EESTEDGVKSDEELEQGEVPEDQ------AIDNHPK----MDAKSTFASAEADEENTDKGIVGENEELGEEDGVRGNGTA 4144
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1522 LETREEMER---QNKQLRAEMDDLVSSKDDVGKNVHELERFKRAleQQVQEMRAQMEELEDELQATEDGklrlEVNMQAL 1598
Cdd:COG5271   4145 DGEFEQVQEdtsTPKEAMSEADRQYQSLGDHLREWQQANRIHEW--EDLTESQSQAFDDSEFMHVKEDE----EEDLQAL 4218
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1033370542 1599 KAQHERELQNRDD---ANDDKKKLLSKQVRELEA-ELDAERKQRAQALAGRKK 1647
Cdd:COG5271   4219 GNAEKDQIKSIDRdesANQNPDSMNSTNIAEDEAdEVGDKQLQDGQDISDIKQ 4271
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
898-1168 3.92e-03

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 224259 [Multi-domain]  Cd Length: 294  Bit Score: 41.59  E-value: 3.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  898 QMDLKELENKYQQLSEEktiLAEQLQAETELFAEAEEMRAR---LAARKQELEDILHELESRVEEEEERCQQLQGDKKKM 974
Cdd:COG1340      5 LDKLDELELKRKQLKEE---IEELKEKRDELRKEASELAEKrdeLNAKVRELREKAQELREERDEINEEVQELKEKRDEI 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  975 QQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEdlLVLEDQNSKLHKERklmEERLSEFTSHMAEEEEKVKSLSKL 1054
Cdd:COG1340     82 NAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIER--LEKKQQTSVLTPEE---ERELVQKIKELRKELEDAKKALEE 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1055 RNKYEAVMADMEDRLKKEEKGRQELEKLKRkldgEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNA 1134
Cdd:COG1340    157 NEKLKELKAEIDELKKKAREIHEKIQELAN----EAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRN 232
                          250       260       270
                   ....*....|....*....|....*....|....
gi 1033370542 1135 VLKSLRELQAQLAELQEDMESEKLARAKAEKQRR 1168
Cdd:COG1340    233 LQNELRELEKKIKALRAKEKAAKRREKREELKER 266
PTZ00491 PTZ00491
major vault protein; Provisional
1068-1163 3.99e-03

major vault protein; Provisional


Pssm-ID: 240439 [Multi-domain]  Cd Length: 850  Bit Score: 42.31  E-value: 3.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1068 RLKKEEKGRQELEKLKRKLDGEAG-----DLQEQVAELQQQLEELRQALARKEA-------ELQAALARVEDEAAQKNAV 1135
Cdd:PTZ00491   674 LLEQEARGRLERQKMHDKAKAEEQrtkllELQAESAAVESSGQSRAEALAEAEArlieaeaEVEQAELRAKALRIEAEAE 753
                           90       100
                   ....*....|....*....|....*...
gi 1033370542 1136 LKSLRELQAQLAELQEDMESEKLARAKA 1163
Cdd:PTZ00491   754 LEKLRKRQELELEYEQAQNELEIAKAKE 781
DUF4618 pfam15397
Domain of unknown function (DUF4618); This family of proteins is found in eukaryotes. Proteins ...
1544-1699 4.01e-03

Domain of unknown function (DUF4618); This family of proteins is found in eukaryotes. Proteins in this family are typically between 238 and 363 amino acids in length. There are two conserved sequence motifs: EYP and KCTPD.


Pssm-ID: 434695 [Multi-domain]  Cd Length: 258  Bit Score: 41.09  E-value: 4.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1544 SSKDDVGKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDgklrlEVN-----------MQALK-AQHERELQNRDD 1611
Cdd:pfam15397   60 SNKKQLQQAKAELQEWEEKEESKLNKLEQQLEQLNAKIQKTQE-----ELNflstykdkeypVKAVQiANLVRQLQQLKD 134
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1612 AN----DDKKKLLSKQVRELEAELDAERKQRAQALA---------GRKKLELDLQEAMAQLDAANKGRDEAGKQLRKLQA 1678
Cdd:pfam15397  135 SQqdelDELEEMRREVLESLSRKIQKKKEKILSSLAektqspyqeSLLQKTRDNQVMLKEIEQFREFIDELEEEIPKLKA 214
                          170       180
                   ....*....|....*....|.
gi 1033370542 1679 QMKELWREVEEaraAREEIFI 1699
Cdd:pfam15397  215 EVQQLQAQRQE---PREIIFA 232
PRK10920 PRK10920
putative uroporphyrinogen III C-methyltransferase; Provisional
1093-1161 4.14e-03

putative uroporphyrinogen III C-methyltransferase; Provisional


Pssm-ID: 236795  Cd Length: 390  Bit Score: 41.62  E-value: 4.14e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1033370542 1093 LQEQVAELQQQLEELRQALARKEAELQAALarveDEAAQKNAVL-KSLRELQAQLAELQ-EDMESEKLARA 1161
Cdd:PRK10920    72 LANQLTALQKAQESQKQELEGILKQQAKAL----DQANRQQAALaKQLDELQQKVATISgSDAKTWLLAQA 138
Uso1_p115_C pfam04871
Uso1 / p115 like vesicle tethering protein, C terminal region; Also known as General vesicular ...
1042-1156 4.20e-03

Uso1 / p115 like vesicle tethering protein, C terminal region; Also known as General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerization, and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of the acidic C-terminus, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another.


Pssm-ID: 428166 [Multi-domain]  Cd Length: 124  Bit Score: 39.32  E-value: 4.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1042 AEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAA 1121
Cdd:pfam04871    4 SELESEAASLKDENTELKAELQALSDQYQSLEQKKKAAESQAKELEAENKKLEEELKKLRAELSEEKQKEKEKQSELEDL 83
                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1033370542 1122 LARVEDEAAQKNAVLKSLRELQAQLAELQEDMESE 1156
Cdd:pfam04871   84 LLLLGDLEEKVEKYKARLKELGEEVSDDEDDDEDD 118
F-BAR_CIP4-like cd07653
The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 ...
1185-1314 4.30e-03

The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins; F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.


Pssm-ID: 153337 [Multi-domain]  Cd Length: 251  Bit Score: 41.08  E-value: 4.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1185 LDSTAAQQELRSK--REQEVTELKKTIEEevkvHEAQvldmRQRHTSALEELSEQLEQSRRfkiNLEKTKQALEGENAEM 1262
Cdd:cd07653     74 VNDIAGQHELIAEnlNSNVCKELKTLISE----LRQE----RKKHLSEGSKLQQKLESSIK---QLEKSKKAYEKAFKEA 142
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1033370542 1263 QKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNE 1314
Cdd:cd07653    143 EKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKE 194
PRK12704 PRK12704
phosphodiesterase; Provisional
1063-1214 4.64e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 41.69  E-value: 4.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1063 ADMEDRLKKEEK---GRQELEKLKRKLDGEagdLQEQVAELQQQLEELRQalarKEAELQAALARVEDEAAQKNAVLKSL 1139
Cdd:PRK12704    47 AKKEAEAIKKEAlleAKEEIHKLRNEFEKE---LRERRNELQKLEKRLLQ----KEENLDRKLELLEKREEELEKKEKEL 119
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1140 RELQAQLAELQEDMESeklaraKAEKQRRDLgEELEALKTEledtldsTAAQQ---ELRSKREQEVTELKKTIEEEVK 1214
Cdd:PRK12704   120 EQKQQELEKKEEELEE------LIEEQLQEL-ERISGLTAE-------EAKEIlleKVEEEARHEAAVLIKEIEEEAK 183
EzrA COG4477
Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome ...
996-1256 4.72e-03

Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 226883 [Multi-domain]  Cd Length: 570  Bit Score: 41.98  E-value: 4.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  996 QLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKSL----SKLRNKYeavmadmedRLKK 1071
Cdd:COG4477    273 QLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLkeeiERVKESY---------RLAE 343
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1072 EEKGRQEleKLKRKLDgEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQE 1151
Cdd:COG4477    344 TELGSVR--KFEKELK-ELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLE 420
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1152 DMESEKLARAKAEKQRR-------------DLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVK--VH 1216
Cdd:COG4477    421 RLKSKLHEIKRYMEKSNlpglpetflslffTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVEnaVL 500
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1033370542 1217 EAQVLDMRQRHTSALEELSEQLEQS-RRFKIN------LEKTKQALE 1256
Cdd:COG4477    501 AEQLIQYGNRYRSRNAEVAKSLNEAeRLFENAfdydasFEIASQALE 547
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1391-1645 5.30e-03

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 41.55  E-value: 5.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1391 QMQSLQQQVMETKKKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVS 1470
Cdd:COG4372     89 ELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ 168
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1471 ALEKKQKKFDQMLAEEKLISARYAEERDRAEADAREKETKvlslsralEEALETREEMERQNKQLRAEMDDLVSSKDdvg 1550
Cdd:COG4372    169 SLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATR--------ANAAQARTEELARRAAAAQQTAQAIQQRD--- 237
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1551 KNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQHERELQnrddanddkkkLLSKQVRELEAE 1630
Cdd:COG4372    238 AQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAA-----------TQRGQVLAGAAQ 306
                          250
                   ....*....|....*
gi 1033370542 1631 LDAERKQRAQALAGR 1645
Cdd:COG4372    307 RVAQAQAQAQAQAQL 321
ERM pfam00769
Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at ...
963-1188 5.36e-03

Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins.


Pssm-ID: 425860 [Multi-domain]  Cd Length: 247  Bit Score: 40.69  E-value: 5.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  963 RCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEdllvledqnsklhkerklMEERLSEftSHMA 1042
Cdd:pfam00769   14 RLKQYEEETRKAQEELEESEETAELLEEKLRVAEEEAELLEQKAQEAEE------------------EKERLEE--SAEM 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1043 EEEEKVKSLSKLRNKYEAVMADMEDRLKKEEkgrqeleklkrkldgEAGDLQEQVAELQQQLEELRQALARKEAELQAAL 1122
Cdd:pfam00769   74 EAEEKEQLERELREAQEEVARLEEESERKEE---------------EAERLQEELEEAREEEEEAKEKLLAASTSPSHHH 138
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542 1123 ARVEDEA---AQKNAVLKSLRELQAQLAELQEDMESEKLARAKAEKQRRdLGEELEALKTELEDTLDST 1188
Cdd:pfam00769  139 SEESENEddeEEEESYEGGSAELSNDGDMDQLSDRIEEERVTEAEKNER-LQKQLKALKSELAQARDET 206
DUF4686 pfam15742
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ...
1093-1475 5.81e-03

Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.


Pssm-ID: 434900 [Multi-domain]  Cd Length: 384  Bit Score: 41.20  E-value: 5.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1093 LQEQVAELQQQLEELRQALARKEAELqaalaRVEDEaaqKNAVLKSlrelqaQLAELQEDMESEKLARAKAEKQRRDLGE 1172
Cdd:pfam15742   11 QQEEVQQLRQDLQRLQILCTSAEREL-----RYERE---KNLDLKQ------HNSLLQEENIKIKAELKQAQQKLLDSTK 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1173 ELEALKTELEDtLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRhtsaLEELSEQLEQSRrfKINLEKT- 1251
Cdd:pfam15742   77 MCSSLTAEWEH-CQQKIRELELEVLKQAQSIKSQNSLQEKLAQEKSKVADAEKK----ILELQQKLEHAH--KVCLTETc 149
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1252 ---KQALEGENAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQ-----LRAGEG--ERAKAELVERLVKLQNELdGVSGT 1321
Cdd:pfam15742  150 ileKKQLEEEIKEAQENEAKLKQQYQEEQQKRKLLDQNVNELQqqvrsLQDKEAqlEMTNSQQQLRIQQQEAQL-KQLEN 228
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1322 LGSTESKTIKLAKDLATVESHLQDTQELLQEETRQKLN-LSSRVRQLEEEKAamleqleeeeAAKANFSRQMQSLQQQVM 1400
Cdd:pfam15742  229 EKRKSDEHLKSNQELSEKLSSLQQEKEALQEELQQVLKqLDVHVRKYNEKHH----------HHKAKLRRAKDRLVHEVE 298
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1401 ---ETKKKLEEDagvaeaIEEARRRaakdLESLSVRYEERVQACDKLEKGRTRLQQELDDVTVALDQQRQVVSALEKK 1475
Cdd:pfam15742  299 qrdERIKQLENE------IRILRQQ----IEKEKAFQKQVTAENDTLLLEKRKLLEQLTEQEEVIKNNKRTISSVQNR 366
46 PHA02562
endonuclease subunit; Provisional
990-1252 5.92e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.54  E-value: 5.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  990 AARQKL--QLEKVSTEAKLKKMEEDLL-VLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVKS-LSKLRNKYEavmadm 1065
Cdd:PHA02562   150 PARRKLveDLLDISVLSEMDKLNKDKIrELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGEnIARKQNKYD------ 223
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1066 eDRLKKEEKGRQELEKLkrkldgeagdlQEQVAELQQQLEELRQALARkeaeLQAALARVEDEAAQKNAVLKSLRELQ-- 1143
Cdd:PHA02562   224 -ELVEEAKTIKAEIEEL-----------TDELLNLVMDIEDPSAALNK----LNTAAAKIKSKIEQFQKVIKMYEKGGvc 287
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1144 ----AQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTELK------KTIEEEV 1213
Cdd:PHA02562   288 ptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLItlvdkaKKVKAAI 367
                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1033370542 1214 KVHEAQVLDmrqrHTSALEELSEQLEQSRRFKINLEKTK 1252
Cdd:PHA02562   368 EELQAEFVD----NAEELAKLQDELDKIVKTKSELVKEK 402
GOLGA2L5 pfam15070
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ...
993-1454 6.28e-03

Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes. Proteins in this family are typically between and 840 amino acids in length.


Pssm-ID: 434436 [Multi-domain]  Cd Length: 521  Bit Score: 41.18  E-value: 6.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  993 QKLQLEKVSTEAKLKkmEEDLLVLEDQNSKLHKERKLMEERlsefTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRL--- 1069
Cdd:pfam15070    7 KQLQAERDQYAENLK--EEGAVWQQKMQQLSEQVRTLREEK----ERSVSQVQELETSLAELKNQAAVPPAEEQPPAgps 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1070 KKEEKGRQELEKLKRKLDGEAGDLQEQVAElQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLkslrelqaqlael 1149
Cdd:pfam15070   81 EEEQRLQEEAEQLQKELEALAGQLQAQVRD-NEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQIL------------- 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1150 qEDMESEKLARAKAEKQRRDLGEELEAL-----KTELEDTLDSTAAQQELRSKRE---------QEVTELKKTIEEevKV 1215
Cdd:pfam15070  147 -EDMQSDRATISRALSQNRELKEQLAELqngfvKLTNENMELTSALQSEQHVKKElakklgqlqEELGELKETLEL--KS 223
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1216 HEAQVLdMRQRhtsalEELSEQLEQsrrfkinLEKTKQALEGENAEMQKEVkLLQA------------AKLESEQRRKKL 1283
Cdd:pfam15070  224 QEAQSL-QEQR-----DQYLAHLQQ-------YVAAYQQLASEKEELHKQY-LLQTqlmdrlqheevqGKVAAEMARQEL 289
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1284 EGQVQELQLRAGEGERAKAELveRLVKLQNELDGVSGTLGSTESKTIKLA--KDLatvEShlqdtqellQEETRQKLNls 1361
Cdd:pfam15070  290 QETQERLEALTQQNQQLQAQL--SLLANPGEGDGLESEEEDEEAPRPSLSipEDF---ES---------REAMVAFFN-- 353
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1362 SRVRQLEEEKAAMLEQLEEEEaakanfsRQMQSLQQQVMETKKKLEEDAGVAEAIEEarrraakdlESLSVRYEERVQ-A 1440
Cdd:pfam15070  354 SALAQAEEERAELRRQLKEQK-------RRCRALAHQAAPARQEEQEHHAHAPGTGG---------DSVPVEVHQALQvA 417
                          490
                   ....*....|....
gi 1033370542 1441 CDKLEKGRTRLQQE 1454
Cdd:pfam15070  418 MEKLQSRFTELMQE 431
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
1493-1720 7.20e-03

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 224259 [Multi-domain]  Cd Length: 294  Bit Score: 40.43  E-value: 7.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1493 YAEERDRAEADAREKETKVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEqqvqEMRA 1572
Cdd:COG1340     39 LAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIK----SLER 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1573 QMEELEdELQATEDGKLRLEVNMQALKAQHERELQNRDDANDDKKKLlskqvRELEAELDAERKQRAQALAGRKKLELDL 1652
Cdd:COG1340    115 EIERLE-KKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKL-----KELKAEIDELKKKAREIHEKIQELANEA 188
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1033370542 1653 QEAMAQLDAANKGRDEAGKQLRKLQAQMKELWREVEEARAAREEIFIQSRESEKKLKNLEAELLQLQE 1720
Cdd:COG1340    189 QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKR 256
46 PHA02562
endonuclease subunit; Provisional
880-1117 7.33e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.15  E-value: 7.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  880 MQAKAVELQKVQEK----HTKTQMD------LKELENKYQQLSEEKTILAEQLQAETELFaeaEEMRARLAARKQELEDI 949
Cdd:PHA02562   145 MQLSAPARRKLVEDlldiSVLSEMDklnkdkIRELNQQIQTLDMKIDHIQQQIKTYNKNI---EEQRKKNGENIARKQNK 221
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  950 LHELESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQlEKVSTEAKLKKMEEDLLV-------LEDQN-- 1020
Cdd:PHA02562   222 YDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIK-SKIEQFQKVIKMYEKGGVcptctqqISEGPdr 300
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1021 -SKLHKERKLMEERLSEFTSHMAEEEEKV-------KSLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKrkldGEAGD 1092
Cdd:PHA02562   301 iTKIKDKLKELQHSLEKLDTAIDELEEIMdefneqsKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ----AEFVD 376
                          250       260
                   ....*....|....*....|....*
gi 1033370542 1093 LQEQVAELQQQLEELRQALARKEAE 1117
Cdd:PHA02562   377 NAEELAKLQDELDKIVKTKSELVKE 401
YqiK COG2268
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
991-1168 8.21e-03

Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];


Pssm-ID: 225177 [Multi-domain]  Cd Length: 548  Bit Score: 40.97  E-value: 8.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  991 ARQKLQLEKVSTEAKLKKMEEDllVLEDQNSKLHKERKLMEerlsefTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLK 1070
Cdd:COG2268    272 AETEAEVAAWKAETRREAEQAE--ILAEQAIQEEKAQAEQE------VQHAKALEAREMRVGLIERQKETELEPQERSYF 343
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1071 KEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQ 1150
Cdd:COG2268    344 INAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIK 423
                          170
                   ....*....|....*....
gi 1033370542 1151 EDME-SEKLARAKAEKQRR 1168
Cdd:COG2268    424 AEAEaIREKGKAEAEAKRA 442
GumC COG3206
Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane ...
1404-1692 8.30e-03

Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225747 [Multi-domain]  Cd Length: 458  Bit Score: 40.89  E-value: 8.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1404 KKLEEDAGVAEAIEEARRRAAKDLESLSVRYEERVQACDklEKGRTRLQQELDDVTVALDQQRQVvsalEKKQKKFDQML 1483
Cdd:COG3206    121 RLLKDLIGPDPTIFEISYRLDDLLESLKVLRAGRSRVIE--LSYTSNDPKLAAKLANALAQAYLA----DQLEAQLEAFR 194
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1484 AEEKLISARYAEERDRAEADAREKETKVLS--LSRALEEALETREEMERQNKQL------RAEMDDLVSSKDDVGKNVHE 1555
Cdd:COG3206    195 RASDSLDERLEELRARLQEAEAQVEDFRAQhgLTDAARGQLLSEQQLSALNTQLqsararLAQAEARLASLLQLLPLGRE 274
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1556 LERFK-RALEQQVQEMRAQMEELEDELQA-TEDGKLRLEvNMQALKAQherelqnrddanddkkkllskqVRELEAELDA 1633
Cdd:COG3206    275 AAALReVLESPTIQDLRQQYAQVRQQIADlSTELGAKHP-QLVALEAQ----------------------LAELRQQIAA 331
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1033370542 1634 ERKQRAQALAGRKKLELDLQEAMAQLDAANKGRdeaGKQLRKLQAQMKELWREVEEARA 1692
Cdd:COG3206    332 ELRQILASLPNELALLEQQEAALEKELAQLKGR---LSKLPKLQVQLRELEREAEAARS 387
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
1510-1682 8.50e-03

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 40.04  E-value: 8.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1510 KVLSLSRALEEALETREEMERQNKQLRAEMDDLVSSKDDVGKNVHELERFKRALEQQVQemraqmeELEDELQATEDGKL 1589
Cdd:COG1579      4 NNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS-------QLESEIQEIRERIK 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1590 RLEVNMQALKAQHERE-LQNRDDANDDKKKLLSKQVRELEAELDAERKQRAQALAGRKKLELDLQEAMAQLDAANKGRDE 1668
Cdd:COG1579     77 RAEEKLSAVKDERELRaLNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156
                          170
                   ....*....|....
gi 1033370542 1669 AGKQLRKLQAQMKE 1682
Cdd:COG1579    157 EGQELSSKREELKE 170
46 PHA02562
endonuclease subunit; Provisional
1060-1291 8.54e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.15  E-value: 8.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1060 AVMADMEDRLKKEEKG-RQELEKLKRKLDGeagdLQEQVAELQQQLEELR----QALARKEAELQAALARVEDEAAQKNa 1134
Cdd:PHA02562   163 SVLSEMDKLNKDKIRElNQQIQTLDMKIDH----IQQQIKTYNKNIEEQRkkngENIARKQNKYDELVEEAKTIKAEIE- 237
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1135 vlkslrELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEALKTEL----EDTLDSTAAQQ-----ELRSKREQEVTEL 1205
Cdd:PHA02562   238 ------ELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIkmyeKGGVCPTCTQQisegpDRITKIKDKLKEL 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1206 KKTIEEEVK--VHEAQVLDMRQRHTSALEELSEQLEQSRRfkinlekTKQALEGENAEMQKEVKLLQAaklESEQRRKKL 1283
Cdd:PHA02562   312 QHSLEKLDTaiDELEEIMDEFNEQSKKLLELKNKISTNKQ-------SLITLVDKAKKVKAAIEELQA---EFVDNAEEL 381

                   ....*...
gi 1033370542 1284 EGQVQELQ 1291
Cdd:PHA02562   382 AKLQDELD 389
PLN02939 PLN02939
transferase, transferring glycosyl groups
995-1181 8.86e-03

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 41.04  E-value: 8.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  995 LQLEKVSTEAKLKKMEEDLL-VLEDQNS--KLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLrnKYEAVMADMEDRLKK 1071
Cdd:PLN02939   231 LKEENMLLKDDIQFLKAELIeVAETEERvfKLEKERSLLDASLRELESKFIVAQEDVSKLSPL--QYDCWWEKVENLQDL 308
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1072 EEKGRQELEKLKRKLDGEAgDLQEQVAELQQQLEE--LRQALARKEAELQAALARVEDEAAQKNAVLKSLREL-QAQLAE 1148
Cdd:PLN02939   309 LDRATNQVEKAALVLDQNQ-DLRDKVDKLEASLKEanVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLyQESIKE 387
                          170       180       190
                   ....*....|....*....|....*....|...
gi 1033370542 1149 LQEDMESeklarAKAEKQRRDLGEELEALKTEL 1181
Cdd:PLN02939   388 FQDTLSK-----LKEESKKRSLEHPADDMPSEF 415
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
1207-1651 8.96e-03

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 40.90  E-value: 8.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1207 KTIEEEVKVHEAQVLDMRQRHTSALEELSEQLEQSRRFKINLEKTKQALEGENAEmQKEVKLLQAAKLESEQRRKKLEGQ 1286
Cdd:pfam09731   51 LGEDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEVAEEE-KEATKDAAEAKAQLPKSEQEKEKA 129
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1287 VQE-LQLRAGEGERAKAELVErlvklqneldgvsgtlgstesktiklAKDLAT--VESHLQDTQELLQEETRQKLNLSSR 1363
Cdd:pfam09731  130 LEEvLKEAISKAESATAVAKE--------------------------AKDDAIqaVKAHTDSLKEASDTAEISREKATDS 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1364 VRQLEEEKAAmlEQLEEEEAAKANFSRQMQSLQQQVMETKKKLEEDAGVAEAIEEArrraAKDLESLSVRYEERVqacdk 1443
Cdd:pfam09731  184 ALQKAEALAE--KLKEVINLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEK----AQSLAKLVDQYKELV----- 252
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1444 lEKGRTRLQQELDDVTVALDQqrqVVSALEKKQK-KFDQMLAEEKL----ISARYAEERDRAEADAReketkvlslsRAL 1518
Cdd:pfam09731  253 -ASERIVFQQELVSIFPDIIP---VLKEDNLLSNdDLNSLIAHAHReidqLSKKLAELKKREEKHIE----------RAL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1519 EEAletREEMERQNKQLRAEMDDLVSSkddvgknvhELERFKRALEQQVQEMRAQME-ELEDEL-QATEDGKLRLEvnmQ 1596
Cdd:pfam09731  319 EKQ---KEELDKLAEELSARLEEVRAA---------DEAQLRLEFEREREEIRESYEeKLRTELeRQAEAHEEHLK---D 383
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1033370542 1597 ALKAQhERELQNRDDANDDKKKLLSKQVRELE-AELDAERKQRAQALAGRKKLELD 1651
Cdd:pfam09731  384 VLVEQ-EIELQREFLQDIKEKVEEERAGRLLKlNELLANLKGLEKATSSHSEVEDE 438
ClyA_MakA-like cd22655
Vibrio cholerae cytotoxin MakA (motility associated killing factor A), and similar proteins; ...
1534-1646 8.98e-03

Vibrio cholerae cytotoxin MakA (motility associated killing factor A), and similar proteins; This model includes Vibrio cholerae motility associated killing factor A (MakA) cytotoxin, a member of the cytolysin A (ClyA) family of alpha pore-forming toxins (alpha-PFTs). The MakA protein is encoded by the mak operon. Transport of the MakA protein from the bacteria is shown to occur by flagellum-dependent secretion, highlighting a non-conventional and direct role of flagella in pathogenesis of V. cholerae; a conserved N-terminal FTPP motif is essential for MakA secretion via the flagellum channel in a proton motive force-dependent manner. Structure of MakA shows an elongated, almost entirely alpha-helical protein, with the head domain consisting of two helices and three beta-strands that together with the short beta-strand of the tail domain forms a four-stranded sheet. MakA has been demonstrated to cause toxicity in both Caenorhabditis elegans and zebrafish.


Pssm-ID: 439153 [Multi-domain]  Cd Length: 342  Bit Score: 40.34  E-value: 8.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1534 QLRAEMDDLVSSKDDvgKNVHELERFKRALEQQVQEMRAQMEELEDELQATEDGKLRLEVNMQALKAQhereLQNR-DDA 1612
Cdd:cd22655     79 QILNIFKALPTAPDD--AQVEQIIALLQALQKPVQEIISNIAAYQGKLKAWGDKMQAAHDNLTTGAAQ----IQAAeTDL 152
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1033370542 1613 NDDKKKlLSKQVRELEAELDAERKQRAQALAGRK 1646
Cdd:cd22655    153 QADIDK-INNAIANLNAEIAKDNKAIAAAQIAIG 185
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
1100-1192 9.14e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 40.86  E-value: 9.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1100 LQQQLEELRQALAR--KEAELQAALARVEDEAAQKnavlkSLRELQAQLAELQEDMESEKLARAKAEKQRRDLGEELEA- 1176
Cdd:PRK06975   344 LNRKVDRLDQELVQrqQANDAQTAELRVKTEQAQA-----SVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDw 418
                           90
                   ....*....|....*.
gi 1033370542 1177 LKTELEDTLdSTAAQQ 1192
Cdd:PRK06975   419 MIAEVEQML-SSASQQ 433
PTZ00121 PTZ00121
MAEBL; Provisional
829-1138 9.21e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 9.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  829 RKAFMKKQQQMSALKVMQRNCAaylkLRHWQWWRLFTKVKPLLQVTRQDEVMQAKAVELQKVQEKHTKTQMDLKELENK- 907
Cdd:PTZ00121  1558 KKAEEKKKAEEAKKAEEDKNMA----LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKk 1633
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  908 ----YQQLSEEKTILAEQLQAEtelfAEAEEMRARLAARKQELEdilhelesrvEEEEERCQQLQGDKKKMQQHVQDLEE 983
Cdd:PTZ00121  1634 kveqLKKKEAEEKKKAEELKKA----EEENKIKAAEEAKKAEED----------KKKAEEAKKAEEDEKKAAEALKKEAE 1699
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  984 QLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSE-----FTSHMAEEEEkvKSLSKLRNKY 1058
Cdd:PTZ00121  1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDeeekkKIAHLKKEEE--KKAEEIRKEK 1777
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1059 EAVMADMEDrlKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQAL--ARKEAELQAALARVEDEAAQKNAVL 1136
Cdd:PTZ00121  1778 EAVIEEELD--EEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEdsAIKEVADSKNMQLEEADAFEKHKFN 1855

                   ..
gi 1033370542 1137 KS 1138
Cdd:PTZ00121  1856 KN 1857
DUF812 pfam05667
Protein of unknown function (DUF812); This family consists of several eukaryotic proteins of ...
993-1153 9.23e-03

Protein of unknown function (DUF812); This family consists of several eukaryotic proteins of unknown function.


Pssm-ID: 428574 [Multi-domain]  Cd Length: 601  Bit Score: 40.76  E-value: 9.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  993 QKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTShmAEEeekvkSLSKLRNKYEAVMADMEDRLKKE 1072
Cdd:pfam05667  353 EELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLLPD--AEE-----NIAKLQALVEASAQRLVELAGQW 425
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1073 EKGR----QELEKLKRKLDgeagdlqEQVAELQQQLEELRqalarkeaELQAALARVEDEAAQKNAVLKslrELQAQLAE 1148
Cdd:pfam05667  426 EKHRvpliEEYRALKEAKS-------NKESESQRKLEEIK--------ELREKIKEVAEEARSKEELYK---QLVAEYER 487

                   ....*
gi 1033370542 1149 LQEDM 1153
Cdd:pfam05667  488 LPKDV 492
Surf_Exclu_PgrA TIGR04320
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ...
1088-1193 9.35e-03

SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.


Pssm-ID: 275124 [Multi-domain]  Cd Length: 356  Bit Score: 40.48  E-value: 9.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1088 GEAGDLQEQVAELQQQLEELRQALARKEAELQAAlarvedeAAQKNAVLKSLRELQAQLAELQEDMESE-KLARAKAEKQ 1166
Cdd:TIGR04320  254 NSLAALQAKLATAQADLAAAQTALNTAQAALTSA-------QTAYAAAQAALATAQKELANAQAQALQTaQNNLATAQAA 326
                           90       100
                   ....*....|....*....|....*..
gi 1033370542 1167 RRDLGEELEALKTELEDTLDSTAAQQE 1193
Cdd:TIGR04320  327 LANAEARLAKAKEALANLNADLAKKQA 353
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
1172-1364 9.46e-03

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 40.04  E-value: 9.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1172 EELEALKTELEDTLDSTAAQQELRSKREQEVTELKKTIEEEVKVHEAQVLDMRQRHTSALEELSeqleqsrrfkinlekt 1251
Cdd:COG1579     20 DRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS---------------- 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1252 kqalegeNAEMQKEVKLLQAAKLESEQRRKKLEGQVQELQLRAGEGERAKAELVERLVKLQNELDGVSGTLGSTESKTIK 1331
Cdd:COG1579     84 -------AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156
                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1033370542 1332 LAKDLATVESHLQDT--QELLQEETRQKLNLSSRV 1364
Cdd:COG1579    157 EGQELSSKREELKEKldPELLSEYERIRKNKKGVG 191
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
874-1422 9.48e-03

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 40.98  E-value: 9.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  874 TRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAEAEEmRARLAARKQELEDIlhel 953
Cdd:COG4717    331 SAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKR-LDEKRLFEDEAEEE---- 405
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542  954 esrveeeeeRCQQLQGDKKKMQqhvqdleeqleeeeaARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEEr 1033
Cdd:COG4717    406 ---------ARQRLADDEEEVR---------------AGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQKQRFLREK- 460
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1034 LSEFTSHMAEEEEKV--KSLSKLRNKYEAVMADMEDRLKKEEKGRQeleklkrKLDGEAGDLQEQVAELQQQLEELRQAL 1111
Cdd:COG4717    461 QTAFERQKTEHTKIIalRLAGMLLVALSRLLTSLIFQIIFAVAQIV-------FLSAEIKSSSRAVREEKAAVTDIPEEL 533
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1112 ARKEAELQAALARVEDEAAQKNAvlkslRELQAQLAELQEDMEseklARAKAEKQRRDLGEELEALKTELEDTLDSTAAQ 1191
Cdd:COG4717    534 ARLLITDELPELAVDLLVQSRIR-----QHWQQLRKALDQLEA----AYEALEGRFAAAEAAMAEWQSEWEEALDELGLS 604
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1192 QELRSKREQEVTELKKTIEEEVKvheaqvldmrqrHTSALEELSEQLEQSRR-FKINLEKTKQALEGENAEMQ---KEVK 1267
Cdd:COG4717    605 RELSPEQQLDILSTMKDLKKLMQ------------KKAELTHQVARLREEQAaFEERVEGLLAVLEAQFIDLStlfCVQR 672
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1268 LLQAAKLESEQRRKKLEGQVQ-----ELQLRAGEGE--------------------RAKAELVERLVKLQNELDGVSGTL 1322
Cdd:COG4717    673 LRVAAELQKEEARLALEGNIErtkelNDELRAELELhrkeildlfdcgtadtedafREAAREEQQLTQRESRLESLEAQL 752
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1033370542 1323 GSTESKTIKLAKDLA---TVESHLQDTQELLQEETRQKLNLSSRVRQLEEEKAAMLEQLEEeeaakANFSRQMQSLQQQV 1399
Cdd:COG4717    753 EGVAAEAYELSASLDqreLKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTV-----AELRQRRESLKEDL 827
                          570       580
                   ....*....|....*....|...
gi 1033370542 1400 METKKKLEEDAGVAEAIEEARRR 1422
Cdd:COG4717    828 EEKARKWASLRLAVQVLEEALRL 850
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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