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Conserved domains on  [gi|1039792657|ref|XP_017168760|]
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sodium/potassium/calcium exchanger 1 isoform X1 [Mus musculus]

Protein Classification

putative sodium/potassium/calcium exchanger( domain architecture ID 1001229)

putative sodium/potassium/calcium exchanger

Gene Ontology:  GO:0005886|GO:0015293|GO:0006811
PubMed:  15163769
TCDB:  2.A.19

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
2A1904 super family cl36772
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
1-1130 0e+00

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


The actual alignment was detected with superfamily member TIGR00927:

Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 1504.89  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657    1 MGKLIRMGTQERRLLRPKRLHWSRLLFLLGMLIIGSTYQHLRRPQNPPSMWTKVSSQQPIKLAVRDLPNNEMAVAGSDPP 80
Cdd:TIGR00927    1 MGKLIRMGTQERRLLRPKRLHWSRLLFLLGMLIIGSTYQHLRRPQGLPSLWAAVSSQQPIKLASRDLSNDEMMMVSSDPP 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657   81 EASSEVEDGMLAAQDTVIMDEAAPSIAMEDTPNPPR-TTKIPPASLKNSYSPTTAGTRRQKENIPPTPSGAPSHFISTPG 159
Cdd:TIGR00927   81 KSSSEMEGEMLAPQATVGRDEATPSIAMENTPSPPRrTAKITPTTPKNNYSPTAAGTERVKEDTPATPSRALNHYISTSG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  160 RQRVKSYIPKPRGERKNSSPTHAREKGRTHTPSPAG----------------AHTISPTATVRDRETMATYRLLETR-FE 222
Cdd:TIGR00927  161 RQRVKSYTPKPRGEVKSSSPTQTREKVRKYTPSPLGrmvnsyapstfmtmprSHGITPRTTVKDSEITATYKMLETNpSK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  223 RTAGETTAASLKRMVLNTPTFLTHEVETNLMTS-SSLVGKNTAVSLRKGERNIST------------TPQGAVPQHTPAT 289
Cdd:TIGR00927  241 RTAGKTTPTPLKGMTDNTPTFLTREVETDLLTSpRSVVEKNTLTTPRRVESNSSTnhwglvgknnltTPQGTVLEHTPAT 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  290 SEEQMTVSTRMGSIPATIEGSTAARRINNPLSRTSAPAIRIASATNR--EKRPSTAPSTLVTP--KATMSTQVHRCVVVE 365
Cdd:TIGR00927  321 SEGQVTISIMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIASATFRglEKNPSTAPSTPATPrvRAVLTTQVHHCVVVK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  366 PAPAVPMTPSPGVTSILFPETPSSGPSALPPGWPNLHPKAEYPPDLFSVEDRRQGWVVLHIFGMMYVFVALAIVCDEYFV 445
Cdd:TIGR00927  401 PAPAVPTTPSPSLTTALFPEAPSPSPSALPPGQPDLHPKAEYPPDLFSVEERRQGWVVLHIFGMMYVFVALAIVCDEYFV 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  446 PALGVITHKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCALFSREILNLTWWPL 525
Cdd:TIGR00927  481 PALGVITDKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCALFSREILNLTWWPL 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  526 FRDVSFYILDLSMLIVFFLDSFIAWWESLLLLLAYALYVFTMKWNKQIELWVKEQLSRRPVAKVMALGDLSKpsedavee 605
Cdd:TIGR00927  561 FRDVSFYILDLMMLILFFLDSLIAWWESLLLLLAYALYVFTMKWNKQIELWVKEQLSRRPVAKVMALGDLSK-------- 632
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  606 neqqdskklklpsvltrgsssaslhnsiirntiyhlmlhsldplgearpskdkqeslnqEARVLSQTKAESSPDEDEPAe 685
Cdd:TIGR00927  633 -----------------------------------------------------------GDVAEAEHTGERTGEEGERP- 652
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  686 lpavTVTPAPAPDAKGDQEDDPGCQEDVDEAERRGEMtgeegeketeTEGKKDEQEGETEAERKEDEQEEETEAEGKEQE 765
Cdd:TIGR00927  653 ----TEAEGENGEESGGEAEQEGETETKGENESEGEI----------PAERKGEQEGEGEIEAKEADHKGETEAEEVEHE 718
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  766 GETEAEGKEDEQEGETEAEGKKDEQEGETEAEGKEEQ-----------EGETEAEGKEDEQEGETEAEGKEEQEGETEAE 834
Cdd:TIGR00927  719 GETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVetegdrketehEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  835 SKeVEQERETEAEGKDKHEGQGETQPDDTEVKDGEGETEANAEDQCEATQGEKGADGGGES---DGGDSEEEEDEEDEEE 911
Cdd:TIGR00927  799 GK-VEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSdggDSEEEEEEEEEEEEEE 877
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  912 EEEEDEEEEEEENEEPLSLEWPDSRQKQAIYLFLLPIVFPLWLTIPDVRRQESRKFFVITFLGSIIWIAMFSYLMVWWAH 991
Cdd:TIGR00927  878 EEEEEEEEEEEENEEPLSLEWPETRQKQAIYLFLLPIVFPLWLTVPDVRRQEARKFFVITFLGSIMWIAMFSYLMVWWAH 957
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  992 QVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLLFSLINALQPVPVSSNG 1071
Cdd:TIGR00927  958 QVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLLFSLINGLQPVPVSSNG 1037
                         1130      1140      1150      1160      1170
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039792657 1072 LFCAIVLLFLMLLFVIFSIASCKWRMNKILGFTMFLLYFVFLVISVMLEDRIISCPVSV 1130
Cdd:TIGR00927 1038 LFCAIVLLFLMLLFVISSIASCKWRMNKILGFTMFLLYFVFLIISVMLEDRIISCPVSV 1096
 
Name Accession Description Interval E-value
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
1-1130 0e+00

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 1504.89  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657    1 MGKLIRMGTQERRLLRPKRLHWSRLLFLLGMLIIGSTYQHLRRPQNPPSMWTKVSSQQPIKLAVRDLPNNEMAVAGSDPP 80
Cdd:TIGR00927    1 MGKLIRMGTQERRLLRPKRLHWSRLLFLLGMLIIGSTYQHLRRPQGLPSLWAAVSSQQPIKLASRDLSNDEMMMVSSDPP 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657   81 EASSEVEDGMLAAQDTVIMDEAAPSIAMEDTPNPPR-TTKIPPASLKNSYSPTTAGTRRQKENIPPTPSGAPSHFISTPG 159
Cdd:TIGR00927   81 KSSSEMEGEMLAPQATVGRDEATPSIAMENTPSPPRrTAKITPTTPKNNYSPTAAGTERVKEDTPATPSRALNHYISTSG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  160 RQRVKSYIPKPRGERKNSSPTHAREKGRTHTPSPAG----------------AHTISPTATVRDRETMATYRLLETR-FE 222
Cdd:TIGR00927  161 RQRVKSYTPKPRGEVKSSSPTQTREKVRKYTPSPLGrmvnsyapstfmtmprSHGITPRTTVKDSEITATYKMLETNpSK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  223 RTAGETTAASLKRMVLNTPTFLTHEVETNLMTS-SSLVGKNTAVSLRKGERNIST------------TPQGAVPQHTPAT 289
Cdd:TIGR00927  241 RTAGKTTPTPLKGMTDNTPTFLTREVETDLLTSpRSVVEKNTLTTPRRVESNSSTnhwglvgknnltTPQGTVLEHTPAT 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  290 SEEQMTVSTRMGSIPATIEGSTAARRINNPLSRTSAPAIRIASATNR--EKRPSTAPSTLVTP--KATMSTQVHRCVVVE 365
Cdd:TIGR00927  321 SEGQVTISIMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIASATFRglEKNPSTAPSTPATPrvRAVLTTQVHHCVVVK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  366 PAPAVPMTPSPGVTSILFPETPSSGPSALPPGWPNLHPKAEYPPDLFSVEDRRQGWVVLHIFGMMYVFVALAIVCDEYFV 445
Cdd:TIGR00927  401 PAPAVPTTPSPSLTTALFPEAPSPSPSALPPGQPDLHPKAEYPPDLFSVEERRQGWVVLHIFGMMYVFVALAIVCDEYFV 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  446 PALGVITHKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCALFSREILNLTWWPL 525
Cdd:TIGR00927  481 PALGVITDKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCALFSREILNLTWWPL 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  526 FRDVSFYILDLSMLIVFFLDSFIAWWESLLLLLAYALYVFTMKWNKQIELWVKEQLSRRPVAKVMALGDLSKpsedavee 605
Cdd:TIGR00927  561 FRDVSFYILDLMMLILFFLDSLIAWWESLLLLLAYALYVFTMKWNKQIELWVKEQLSRRPVAKVMALGDLSK-------- 632
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  606 neqqdskklklpsvltrgsssaslhnsiirntiyhlmlhsldplgearpskdkqeslnqEARVLSQTKAESSPDEDEPAe 685
Cdd:TIGR00927  633 -----------------------------------------------------------GDVAEAEHTGERTGEEGERP- 652
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  686 lpavTVTPAPAPDAKGDQEDDPGCQEDVDEAERRGEMtgeegeketeTEGKKDEQEGETEAERKEDEQEEETEAEGKEQE 765
Cdd:TIGR00927  653 ----TEAEGENGEESGGEAEQEGETETKGENESEGEI----------PAERKGEQEGEGEIEAKEADHKGETEAEEVEHE 718
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  766 GETEAEGKEDEQEGETEAEGKKDEQEGETEAEGKEEQ-----------EGETEAEGKEDEQEGETEAEGKEEQEGETEAE 834
Cdd:TIGR00927  719 GETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVetegdrketehEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  835 SKeVEQERETEAEGKDKHEGQGETQPDDTEVKDGEGETEANAEDQCEATQGEKGADGGGES---DGGDSEEEEDEEDEEE 911
Cdd:TIGR00927  799 GK-VEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSdggDSEEEEEEEEEEEEEE 877
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  912 EEEEDEEEEEEENEEPLSLEWPDSRQKQAIYLFLLPIVFPLWLTIPDVRRQESRKFFVITFLGSIIWIAMFSYLMVWWAH 991
Cdd:TIGR00927  878 EEEEEEEEEEEENEEPLSLEWPETRQKQAIYLFLLPIVFPLWLTVPDVRRQEARKFFVITFLGSIMWIAMFSYLMVWWAH 957
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  992 QVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLLFSLINALQPVPVSSNG 1071
Cdd:TIGR00927  958 QVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLLFSLINGLQPVPVSSNG 1037
                         1130      1140      1150      1160      1170
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039792657 1072 LFCAIVLLFLMLLFVIFSIASCKWRMNKILGFTMFLLYFVFLVISVMLEDRIISCPVSV 1130
Cdd:TIGR00927 1038 LFCAIVLLFLMLLFVISSIASCKWRMNKILGFTMFLLYFVFLIISVMLEDRIISCPVSV 1096
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
967-1118 9.70e-33

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 124.25  E-value: 9.70e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  967 FFVITFLGSIIWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDIT 1046
Cdd:pfam01699    1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039792657 1047 VGLPVPWLLFSLINALQPVPVSSNGLFCAIVLLFLMLLFVIFSIascKWRMNKILGFTMFLLYFVFLVISVM 1118
Cdd:pfam01699   81 LVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLLLPL---FGRLSRFEGLVLLLLYIVYLVFQIV 149
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
940-1115 4.98e-25

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 106.37  E-value: 4.98e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  940 AIYLFLLPIVFpLWLTIPDVRRQESRKFF---------------VITFLGSIIWIAMFSYLMVWWAHQVGETIGISEEIM 1004
Cdd:COG0530    111 GVILLLLYVLY-LYYLIRRARKEPAWEEVeeeleekpkmslwkaLLLLVLGLALLVVGARLLVDGAVEIARALGVSELVI 189
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657 1005 GLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLlfslinaLQPVPVSSN------------GL 1072
Cdd:COG0530    190 GLTIVAIGTSLPELATSIVAARKGEDDLAVGNIIGSNIFNILLVLGIGAL-------ITPIPVDPAvlsfdlpvmlaaTL 262
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1039792657 1073 FCAIvllflmllfvifsIASCKWRMNKILGFTMFLLYFVFLVI 1115
Cdd:COG0530    263 LLLG-------------LLRTGGRIGRWEGLLLLALYLAYLAL 292
PRK10734 PRK10734
putative calcium/sodium:proton antiporter; Provisional
998-1055 5.52e-14

putative calcium/sodium:proton antiporter; Provisional


Pssm-ID: 182684 [Multi-domain]  Cd Length: 325  Bit Score: 74.30  E-value: 5.52e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039792657  998 GISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLL 1055
Cdd:PRK10734   205 AISELTIGLTVIAIGTSLPELATAIAGARKGENDIAVGNIIGSNIFNIVIVLGLPALI 262
 
Name Accession Description Interval E-value
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
1-1130 0e+00

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 1504.89  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657    1 MGKLIRMGTQERRLLRPKRLHWSRLLFLLGMLIIGSTYQHLRRPQNPPSMWTKVSSQQPIKLAVRDLPNNEMAVAGSDPP 80
Cdd:TIGR00927    1 MGKLIRMGTQERRLLRPKRLHWSRLLFLLGMLIIGSTYQHLRRPQGLPSLWAAVSSQQPIKLASRDLSNDEMMMVSSDPP 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657   81 EASSEVEDGMLAAQDTVIMDEAAPSIAMEDTPNPPR-TTKIPPASLKNSYSPTTAGTRRQKENIPPTPSGAPSHFISTPG 159
Cdd:TIGR00927   81 KSSSEMEGEMLAPQATVGRDEATPSIAMENTPSPPRrTAKITPTTPKNNYSPTAAGTERVKEDTPATPSRALNHYISTSG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  160 RQRVKSYIPKPRGERKNSSPTHAREKGRTHTPSPAG----------------AHTISPTATVRDRETMATYRLLETR-FE 222
Cdd:TIGR00927  161 RQRVKSYTPKPRGEVKSSSPTQTREKVRKYTPSPLGrmvnsyapstfmtmprSHGITPRTTVKDSEITATYKMLETNpSK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  223 RTAGETTAASLKRMVLNTPTFLTHEVETNLMTS-SSLVGKNTAVSLRKGERNIST------------TPQGAVPQHTPAT 289
Cdd:TIGR00927  241 RTAGKTTPTPLKGMTDNTPTFLTREVETDLLTSpRSVVEKNTLTTPRRVESNSSTnhwglvgknnltTPQGTVLEHTPAT 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  290 SEEQMTVSTRMGSIPATIEGSTAARRINNPLSRTSAPAIRIASATNR--EKRPSTAPSTLVTP--KATMSTQVHRCVVVE 365
Cdd:TIGR00927  321 SEGQVTISIMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIASATFRglEKNPSTAPSTPATPrvRAVLTTQVHHCVVVK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  366 PAPAVPMTPSPGVTSILFPETPSSGPSALPPGWPNLHPKAEYPPDLFSVEDRRQGWVVLHIFGMMYVFVALAIVCDEYFV 445
Cdd:TIGR00927  401 PAPAVPTTPSPSLTTALFPEAPSPSPSALPPGQPDLHPKAEYPPDLFSVEERRQGWVVLHIFGMMYVFVALAIVCDEYFV 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  446 PALGVITHKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCALFSREILNLTWWPL 525
Cdd:TIGR00927  481 PALGVITDKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCALFSREILNLTWWPL 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  526 FRDVSFYILDLSMLIVFFLDSFIAWWESLLLLLAYALYVFTMKWNKQIELWVKEQLSRRPVAKVMALGDLSKpsedavee 605
Cdd:TIGR00927  561 FRDVSFYILDLMMLILFFLDSLIAWWESLLLLLAYALYVFTMKWNKQIELWVKEQLSRRPVAKVMALGDLSK-------- 632
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  606 neqqdskklklpsvltrgsssaslhnsiirntiyhlmlhsldplgearpskdkqeslnqEARVLSQTKAESSPDEDEPAe 685
Cdd:TIGR00927  633 -----------------------------------------------------------GDVAEAEHTGERTGEEGERP- 652
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  686 lpavTVTPAPAPDAKGDQEDDPGCQEDVDEAERRGEMtgeegeketeTEGKKDEQEGETEAERKEDEQEEETEAEGKEQE 765
Cdd:TIGR00927  653 ----TEAEGENGEESGGEAEQEGETETKGENESEGEI----------PAERKGEQEGEGEIEAKEADHKGETEAEEVEHE 718
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  766 GETEAEGKEDEQEGETEAEGKKDEQEGETEAEGKEEQ-----------EGETEAEGKEDEQEGETEAEGKEEQEGETEAE 834
Cdd:TIGR00927  719 GETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVetegdrketehEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  835 SKeVEQERETEAEGKDKHEGQGETQPDDTEVKDGEGETEANAEDQCEATQGEKGADGGGES---DGGDSEEEEDEEDEEE 911
Cdd:TIGR00927  799 GK-VEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSdggDSEEEEEEEEEEEEEE 877
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  912 EEEEDEEEEEEENEEPLSLEWPDSRQKQAIYLFLLPIVFPLWLTIPDVRRQESRKFFVITFLGSIIWIAMFSYLMVWWAH 991
Cdd:TIGR00927  878 EEEEEEEEEEEENEEPLSLEWPETRQKQAIYLFLLPIVFPLWLTVPDVRRQEARKFFVITFLGSIMWIAMFSYLMVWWAH 957
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  992 QVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLLFSLINALQPVPVSSNG 1071
Cdd:TIGR00927  958 QVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLLFSLINGLQPVPVSSNG 1037
                         1130      1140      1150      1160      1170
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039792657 1072 LFCAIVLLFLMLLFVIFSIASCKWRMNKILGFTMFLLYFVFLVISVMLEDRIISCPVSV 1130
Cdd:TIGR00927 1038 LFCAIVLLFLMLLFVISSIASCKWRMNKILGFTMFLLYFVFLIISVMLEDRIISCPVSV 1096
TIGR00367 TIGR00367
K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and ...
424-550 5.45e-43

K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General]


Pssm-ID: 273039 [Multi-domain]  Cd Length: 307  Bit Score: 159.41  E-value: 5.45e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  424 LHIFGMMYVFVALAIVCDEYFVPALGVITHKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNI 503
Cdd:TIGR00367    1 LLLIGYLILGLILLIYGADLFVKSSVRIARHLGISPLIIGVTVVAIGTSLPELFTSLIASLMGQPDIGVGNVIGSNIFNI 80
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1039792657  504 LFVIGTCALFSrEILNLTWWpLFRDVSFYILDLSMLIVFFLDSFIAW 550
Cdd:TIGR00367   81 LLILGLSAIFS-PIIVDKDW-LRRDILFYLLVSILLLFFGLDGQISR 125
TIGR00367 TIGR00367
K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and ...
961-1112 1.47e-40

K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General]


Pssm-ID: 273039 [Multi-domain]  Cd Length: 307  Bit Score: 152.09  E-value: 1.47e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  961 RQESRKFFVITFLGSIIWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGS 1040
Cdd:TIGR00367  164 RRPQIFFSLVLLIIGLIGLVVGSRLLVDGAVKIAEILGISEKIIGLTLLAIGTSLPELVVSLAAARKGLGDIAVGNVIGS 243
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039792657 1041 NIFDITVGLPVPWLLFSLinALQPVPVSSNGLFCAiVLLFLMLLFVIFSIASCKWrmnkiLGFTMFLLYFVF 1112
Cdd:TIGR00367  244 NIFNILVGLGVPSLFMPI--PVEPLAYNLDAPVMV-IVTLLLMLFFKTSMKLGRW-----EGILLLALYIAY 307
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
967-1118 9.70e-33

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 124.25  E-value: 9.70e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  967 FFVITFLGSIIWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDIT 1046
Cdd:pfam01699    1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039792657 1047 VGLPVPWLLFSLINALQPVPVSSNGLFCAIVLLFLMLLFVIFSIascKWRMNKILGFTMFLLYFVFLVISVM 1118
Cdd:pfam01699   81 LVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLLLPL---FGRLSRFEGLVLLLLYIVYLVFQIV 149
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
425-553 2.54e-30

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 117.32  E-value: 2.54e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  425 HIFGMMYVFVALAIVCDEYFVPALGVITHKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNIL 504
Cdd:pfam01699    1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1039792657  505 FVIGTCALFS-----REILNLTwWPLFRDVSFYILDLSMLIVFFLDSFIAWWES 553
Cdd:pfam01699   81 LVLGLSALIGpvkvdSLLLKLD-LGVLLLVALLLLLLLLLLLLPLFGRLSRFEG 133
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
940-1115 4.98e-25

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 106.37  E-value: 4.98e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  940 AIYLFLLPIVFpLWLTIPDVRRQESRKFF---------------VITFLGSIIWIAMFSYLMVWWAHQVGETIGISEEIM 1004
Cdd:COG0530    111 GVILLLLYVLY-LYYLIRRARKEPAWEEVeeeleekpkmslwkaLLLLVLGLALLVVGARLLVDGAVEIARALGVSELVI 189
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657 1005 GLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLlfslinaLQPVPVSSN------------GL 1072
Cdd:COG0530    190 GLTIVAIGTSLPELATSIVAARKGEDDLAVGNIIGSNIFNILLVLGIGAL-------ITPIPVDPAvlsfdlpvmlaaTL 262
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1039792657 1073 FCAIvllflmllfvifsIASCKWRMNKILGFTMFLLYFVFLVI 1115
Cdd:COG0530    263 LLLG-------------LLRTGGRIGRWEGLLLLALYLAYLAL 292
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
442-552 3.37e-23

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 100.98  E-value: 3.37e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  442 EYFVPALGVITHKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCALFSReiLNLT 521
Cdd:COG0530      2 DLLVRGADALARRLGISPLVIGLTIVAFGTSLPELAVSVTAALDGSPDIAVGNVVGSNIANILLILGLAALIRP--LAVD 79
                           90       100       110
                   ....*....|....*....|....*....|.
gi 1039792657  522 WWPLFRDVSFYILDLSMLIVFFLDSFIAWWE 552
Cdd:COG0530     80 RRVLRRDLPFLLLASLLLLALLLDGTLSRID 110
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
402-553 2.72e-16

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 80.95  E-value: 2.72e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  402 HPKAEYPPDLFSVEDRRQGWVVLhifgmmYVFVALA--IVCDEYFVPALGVITHKLQISEDVAGATFMAAGGSAPELFTS 479
Cdd:COG0530    133 PAWEEVEEELEEKPKMSLWKALL------LLVLGLAllVVGARLLVDGAVEIARALGVSELVIGLTIVAIGTSLPELATS 206
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039792657  480 LIGVFISHSNVGIGTIVGSAVFNILFVIGTCALFSReiLNLTWWPLFRDVSFYILdLSMLIVFFL--DSFIAWWES 553
Cdd:COG0530    207 IVAARKGEDDLAVGNIIGSNIFNILLVLGIGALITP--IPVDPAVLSFDLPVMLA-ATLLLLGLLrtGGRIGRWEG 279
PRK10734 PRK10734
putative calcium/sodium:proton antiporter; Provisional
998-1055 5.52e-14

putative calcium/sodium:proton antiporter; Provisional


Pssm-ID: 182684 [Multi-domain]  Cd Length: 325  Bit Score: 74.30  E-value: 5.52e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039792657  998 GISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLL 1055
Cdd:PRK10734   205 AISELTIGLTVIAIGTSLPELATAIAGARKGENDIAVGNIIGSNIFNIVIVLGLPALI 262
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
990-1072 1.73e-13

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 72.47  E-value: 1.73e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  990 AHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLLFslinalqPVPVSS 1069
Cdd:COG0530      8 ADALARRLGISPLVIGLTIVAFGTSLPELAVSVTAALDGSPDIAVGNVVGSNIANILLILGLAALIR-------PLAVDR 80

                   ...
gi 1039792657 1070 NGL 1072
Cdd:COG0530     81 RVL 83
TIGR00367 TIGR00367
K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and ...
967-1120 2.38e-11

K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General]


Pssm-ID: 273039 [Multi-domain]  Cd Length: 307  Bit Score: 66.19  E-value: 2.38e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  967 FFVITFLGSIIWIAMFsylMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDIT 1046
Cdd:TIGR00367    5 GYLILGLILLIYGADL---FVKSSVRIARHLGISPLIIGVTVVAIGTSLPELFTSLIASLMGQPDIGVGNVIGSNIFNIL 81
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039792657 1047 VGLPVPWLlfslinaLQPVPVSSNGLFcaIVLLFLMLLFVIFSIASCKWRMNKILGFTMFLLYFVFLVISVMLE 1120
Cdd:TIGR00367   82 LILGLSAI-------FSPIIVDKDWLR--RDILFYLLVSILLLFFGLDGQISRIDGVVLLILYIVYLLFLVKNE 146
TIGR00367 TIGR00367
K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and ...
432-544 2.60e-11

K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General]


Pssm-ID: 273039 [Multi-domain]  Cd Length: 307  Bit Score: 66.19  E-value: 2.60e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  432 VFVALAIVCDEYFVPALGVITHKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCA 511
Cdd:TIGR00367  177 IGLIGLVVGSRLLVDGAVKIAEILGISEKIIGLTLLAIGTSLPELVVSLAAARKGLGDIAVGNVIGSNIFNILVGLGVPS 256
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1039792657  512 LFSR-EILNLTwwpLFRDVSFYILdlsMLIVFFL 544
Cdd:TIGR00367  257 LFMPiPVEPLA---YNLDAPVMVI---VTLLLML 284
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
364-510 6.94e-10

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 63.27  E-value: 6.94e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  364 VEPAPAVPMTPSPGVTSILFPETPSSGPSALPPGWpnlhpkaeYPPDLfSVEDRRQGWVVlHIFGMMYVFVALAIVCDEy 443
Cdd:TIGR00845   27 VDHARALTEASSSGSNTGECTGSYYCKEGVILPIW--------EPQNP-SVGDKIARATV-YFVAMVYMFLGVSIIADR- 95
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  444 FVPALGVITHK-----------------LQI-SEDVAGATFMAAGGSAPELFTSLIGV----FIShSNVGIGTIVGSAVF 501
Cdd:TIGR00845   96 FMASIEVITSQekeitikkpngettvttVRIwNETVSNLTLMALGSSAPEILLSVIEVcghnFEA-GDLGPSTIVGSAAF 174

                   ....*....
gi 1039792657  502 NILFVIGTC 510
Cdd:TIGR00845  175 NMFIIIAIC 183
PRK10734 PRK10734
putative calcium/sodium:proton antiporter; Provisional
450-514 1.73e-08

putative calcium/sodium:proton antiporter; Provisional


Pssm-ID: 182684 [Multi-domain]  Cd Length: 325  Bit Score: 57.73  E-value: 1.73e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039792657  450 VITHKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCALFS 514
Cdd:PRK10734   199 VLANYFAISELTIGLTVIAIGTSLPELATAIAGARKGENDIAVGNIIGSNIFNIVIVLGLPALIS 263
PLN03151 PLN03151
cation/calcium exchanger; Provisional
955-1117 1.28e-07

cation/calcium exchanger; Provisional


Pssm-ID: 215604 [Multi-domain]  Cd Length: 650  Bit Score: 55.92  E-value: 1.28e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  955 TIPDvrrQESRKFFVITFLG----SIIWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGlG 1030
Cdd:PLN03151   471 TEPD---RPPRRFLIPWVLGgfimSIVWFYMIANELVALLVAFGVIFGINPSILGLTVLAWGNSMGDLMSNVALAMNG-G 546
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657 1031 D---MAVSSSVGSNIFDITVGLPVPWLLFSLINALQP--VPvSSNGLFCAIVLLFLMLLFVIFSIASCKWRMNKILGFTM 1105
Cdd:PLN03151   547 DgvqIAMSGCYAGPMFNTLVGLGMSMLLGAWSKSPESymLP-EDSSLFYTMGFLVSGLIWALVVLPRNDMRPNKTLGVGL 625
                          170
                   ....*....|..
gi 1039792657 1106 FLLYFVFLVISV 1117
Cdd:PLN03151   626 IALYLIFLTFRV 637
PRK10734 PRK10734
putative calcium/sodium:proton antiporter; Provisional
986-1072 2.22e-07

putative calcium/sodium:proton antiporter; Provisional


Pssm-ID: 182684 [Multi-domain]  Cd Length: 325  Bit Score: 54.27  E-value: 2.22e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  986 MVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITvglpvpwLLFSLINALQPV 1065
Cdd:PRK10734    22 LVFAASILCRTFGIPPLIIGMTVVGIGTSLPEIIVSVAASLHGQRDLAVGTALGSNITNIL-------LILGLAALIRPF 94

                   ....*..
gi 1039792657 1066 PVSSNGL 1072
Cdd:PRK10734    95 TVHSDVL 101
PHA03247 PHA03247
large tegument protein UL36; Provisional
47-397 4.99e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 4.99e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657   47 PPSMWTKV---------SSQQPIKLAVRDLP--NNEMAVAGSDPPEASSEVEDGMLAAQDTVIMDEAAPSIAMEDTPNPP 115
Cdd:PHA03247  2530 HPRMLTWIrgleelasdDAGDPPPPLPPAAPpaAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPR 2609
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  116 RTTkiPPASLknsySPTTAGTRrqkeniPPTPSGAPSHFISTPGRQrvkSYIPKPRGERKNSSPTHAREKGRTHTPSPAg 195
Cdd:PHA03247  2610 GPA--PPSPL----PPDTHAPD------PPPPSPSPAANEPDPHPP---PTVPPPERPRDDPAPGRVSRPRRARRLGRA- 2673
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  196 AHTISPTATVRDRETMATYRLLETRFERTAGETTAASlkrmvlnTPTFLTHEVETNLMTSSSLvGKNTAVSLRKGERnis 275
Cdd:PHA03247  2674 AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEP-------APHALVSATPLPPGPAAAR-QASPALPAAPAPP--- 2742
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  276 TTPQGAVPQHTPATSEEQMTVSTRMGSIPATIEGSTAARRINNPLSRTSAPAiriASATNREKRPSTAPSTLVTPKATMS 355
Cdd:PHA03247  2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES---RESLPSPWDPADPPAAVLAPAAALP 2819
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|..
gi 1039792657  356 TQvhrcvvvePAPAVPMTPSPGVTSILFPETPSSGPSALPPG 397
Cdd:PHA03247  2820 PA--------ASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853
PLN03151 PLN03151
cation/calcium exchanger; Provisional
420-544 1.46e-04

cation/calcium exchanger; Provisional


Pssm-ID: 215604 [Multi-domain]  Cd Length: 650  Bit Score: 45.91  E-value: 1.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  420 GWVVLHIFgMMYVFVALAIVCDEYFVPALGVITHKLQISEDVAGATFMAAGGSAPELFTSlIGVFISHS--NVGIGTIVG 497
Cdd:PLN03151   139 GYAVLGVW-LVALFYLLGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVFAS-IAAFVGKDagEVGLNSVLG 216
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1039792657  498 SAVFNILFVIGTCAL-FSREILNLTWWPLFRDVSFYILDLSMLIVFFL 544
Cdd:PLN03151   217 GAVFVTCVVVGIVSLcVADKEVQIDKRCFIRDLCFFLFTLVSLLVILM 264
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
971-1063 2.11e-04

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 45.55  E-value: 2.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  971 TFLGSIIWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLG-DMAVSSSVGSNIFDITVGL 1049
Cdd:TIGR00845  758 CFVVSILMIGVLTAFIGDLASHFGCTIGLKDSVTAVVFVALGTSVPDTFASKVAATQDQYaDASIGNVTGSNAVNVFLGI 837
                           90
                   ....*....|....
gi 1039792657 1050 PVPWLLFSLINALQ 1063
Cdd:TIGR00845  838 GVAWSIAAIYHAAN 851
PHA03247 PHA03247
large tegument protein UL36; Provisional
73-410 3.47e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 3.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657   73 AVAGSDPPEASSEVEDGML-AAQDTVimdeaAPSIAMEDTPNPPRTTKIPPASLkNSYSPTTAGTRRQKENIPPTPSgap 151
Cdd:PHA03247  2667 ARRLGRAAQASSPPQRPRRrAARPTV-----GSLTSLADPPPPPPTPEPAPHAL-VSATPLPPGPAAARQASPALPA--- 2737
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  152 shfisTPGRQRVKSYIPKPRGERKNSSPtharekgrthtPSPAGAHtiSPTATvRDRETMATYRLletrfERTAGETTAA 231
Cdd:PHA03247  2738 -----APAPPAVPAGPATPGGPARPARP-----------PTTAGPP--APAPP-AAPAAGPPRRL-----TRPAVASLSE 2793
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  232 SLKrmvlntptflthevetNLMTSSSLVGKNTAVSLRKGERNISTTPQGAVPqhtPATSEEQMTVSTRMGSIPA--TIEG 309
Cdd:PHA03247  2794 SRE----------------SLPSPWDPADPPAAVLAPAAALPPAASPAGPLP---PPTSAQPTAPPPPPGPPPPslPLGG 2854
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  310 STAA----RRINNPLSRTSAPAIRIASATNREKRPSTAPSTLVTPKATMSTQvhrcvvVEPAPAVPMTPSPgvtsilfPE 385
Cdd:PHA03247  2855 SVAPggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE------RPPQPQAPPPPQP-------QP 2921
                          330       340
                   ....*....|....*....|....*
gi 1039792657  386 TPSSGPSALPPGWPNLHPKAEYPPD 410
Cdd:PHA03247  2922 QPPPPPQPQPPPPPPPRPQPPLAPT 2946
PHA03169 PHA03169
hypothetical protein; Provisional
767-881 4.64e-04

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 43.81  E-value: 4.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  767 ETEAEGKEDEQEGETEAEGK-KDEQEGETEAEGkeeqegeteaegkEDEQEGETEAEGKEEQEGETEAESKEVEQERETE 845
Cdd:PHA03169    70 ESDTETAEESRHGEKEERGQgGPSGSGSESVGS-------------PTPSPSGSAEELASGLSPENTSGSSPESPASHSP 136
                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1039792657  846 AEGKDKHEGQGETQPDDTEVKDGEGETEANAEDQCE 881
Cdd:PHA03169   137 PPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHE 172
PHA03378 PHA03378
EBNA-3B; Provisional
39-409 4.65e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 44.29  E-value: 4.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657   39 QHLRRPQNPPSMWTKVSSQQPiklavrdLPN-NEMAVAGSDPPEASSEVEDGML--AAQDTVIMDEAAPSIAMEDTPNPP 115
Cdd:PHA03378   460 QPLEGPTGPLSVQAPLEPWQP-------LPHpQVTPVILHQPPAQGVQAHGSMLdlLEKDDEDMEQRVMATLLPPSPPQP 532
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  116 RTTKIPPASLKNSY---SPTTAGTRRQKENIPPTPSgapshfistPGRQRVKSYIPKPRGERKNSSPTHA-REKGRTH-- 189
Cdd:PHA03378   533 RAGRRAPCVYTEDLdieSDEPASTEPVHDQLLPAPG---------LGPLQIQPLTSPTTSQLASSAPSYAqTPWPVPHps 603
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  190 -TPSPAGAHTISPtATVRDRETMATYRLLETRFERTagetTAASLKRMVLNTPTFlTHEVETNLMTSSSLvgkntavslR 268
Cdd:PHA03378   604 qTPEPPTTQSHIP-ETSAPRQWPMPLRPIPMRPLRM----QPITFNVLVFPTPHQ-PPQVEITPYKPTWT---------Q 668
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  269 KGERNISTTPQGA----VPQHTPATSEEQMTVSTRMgSIPATieGSTAARRINNPLSRTSAPAiriaSATNREKRPSTAP 344
Cdd:PHA03378   669 IGHIPYQPSPTGAntmlPIQWAPGTMQPPPRAPTPM-RPPAA--PPGRAQRPAAATGRARPPA----AAPGRARPPAAAP 741
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039792657  345 STLVTPKATMSTQvhRCVVVEPAPAVPMTPSPGVTSILFPetPSSGPSAL--PPGWPNLHPKAEYPP 409
Cdd:PHA03378   742 GRARPPAAAPGRA--RPPAAAPGRARPPAAAPGAPTPQPP--PQAPPAPQqrPRGAPTPQPPPQAGP 804
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
646-883 6.13e-04

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 44.24  E-value: 6.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  646 LDPLGEARPSKDKQESLNQEARVLSQTKAESSPDEDEPAELPAVTVTPAPAPDAKGDQEDDPGCQEDV-DEAERRGEMTG 724
Cdd:COG5271    533 EDALEDETEGEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDATENADADETEESADESEEAEASeDEAAEEEEADD 612
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  725 EEGEKETETEGKKDEQEGETEAERKEDEQEEETEAEGKEQEGETEAEGKEDEQEGETEAEGKKDEQEGETEAEGKEEQEG 804
Cdd:COG5271    613 DEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADESEEEAEDESETSSEDAEEDADAAAAEAS 692
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  805 ------------ETEAEGKEDEQEGETEAEGKEEQEGETEAESKEVEQERETEAEGKD-KHEGQGETQPDDTEVKDGEGE 871
Cdd:COG5271    693 ddeeeteeadedAETASEEADAEEADTEADGTAEEAEEAAEEAESADEEAASLPDEADaEEEAEEAEEAEEDDADGLEEA 772
                          250
                   ....*....|..
gi 1039792657  872 TEANAEDQCEAT 883
Cdd:COG5271    773 LEEEKADAEEAA 784
PTZ00121 PTZ00121
MAEBL; Provisional
651-887 6.68e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 6.68e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  651 EARPSKDKQESlnQEARvlsqtKAESSPDEDEPAElpAVTVTPApapDAKGDQEDDPGCQEDVDEAERRGEMTGEEGEKE 730
Cdd:PTZ00121  1526 EAKKAEEAKKA--DEAK-----KAEEKKKADELKK--AEELKKA---EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  731 TETEGKKDEQEGETEAERKEDEQEEETEAEGKEQEgetEAEGKEDEQEGETEAEGKKDEQEGETEAEGKEEQEGETEAEG 810
Cdd:PTZ00121  1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA---EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  811 KEDEQEG------ETEAEGKEEQEGETEAESKEVEQERETEAEGKDKHE---GQGETQPDDTEVKDGEGETEANAEDQCE 881
Cdd:PTZ00121  1671 EEDKKKAeeakkaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEelkKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750

                   ....*.
gi 1039792657  882 ATQGEK 887
Cdd:PTZ00121  1751 KDEEEK 1756
MISS pfam15822
MAPK-interacting and spindle-stabilising protein-like; MISS is a family of eukaryotic ...
281-409 1.16e-03

MAPK-interacting and spindle-stabilising protein-like; MISS is a family of eukaryotic MAPK-interacting and spindle-stabilising protein-like proteins. MISS is rich in prolines and has four potential MAPK-phosphorylation sites, a MAPK-docking site, a PEST sequence (PEST motif) and a bipartite nuclear localization signal. The endogenous protein accumulates during mouse meiotic maturation and is found as discrete dots on the MII spindle. MISS is the first example of a physiological MAPK-substrate that is stabilized in MII that specifically regulates MII spindle integrity during the CSF arrest.


Pssm-ID: 318115 [Multi-domain]  Cd Length: 238  Bit Score: 41.90  E-value: 1.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  281 AVPQHTPATSEEqmTVSTRMGSIPATIEGStaarrinNPLSRTSAPairiaSATNREKRPSTAPSTLvtPKATMSTQVHr 360
Cdd:pfam15822    6 ALPEQSPAKTSA--VSNPKPGQPPQGWPGS-------NPWNNPSAP-----PAVPSGLPPSTAPSTV--PFGPAPTGMY- 68
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039792657  361 cvvvepaPAVPMT-PSPGVTsilfPETPSSGPSALPPGWPnlhpkaeYPP 409
Cdd:pfam15822   69 -------PSIPLTgPSPGPP----APFPPSGPSCPPPGGP-------YPA 100
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
672-884 1.27e-03

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 43.08  E-value: 1.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  672 TKAESSPDEDEPAELPAVTVTPAPAPDAKGDQEDDPGCQEDVDEAERrgEMTGEEGEKETETEGKKDEQEGETEAERKED 751
Cdd:COG5271    437 TSAEDDIATDEEADSLADEEEEAEAELDTEEDTESAEEDADGDEATD--EDDASDDGDEEEAEEDAEAEADSDELTAEET 514
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  752 EQEEETEAEGKEQEGETEAEGKEDEQEGETEAEGKKDEQEGETEAEGKeeqegeteaegKEDEQEGETEAEGKEEQEGET 831
Cdd:COG5271    515 SADDGADTDAAADPEDSDEDALEDETEGEENAPGSDQDADETDEPEAT-----------AEEDEPDEAEAETEDATENAD 583
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1039792657  832 EAESKEVEQERETEAEGKDKHEGQGETQPDDTevkDGEGETEANAEDQCEATQ 884
Cdd:COG5271    584 ADETEESADESEEAEASEDEAAEEEEADDDEA---DADADGAADEEETEEEAA 633
PHA03169 PHA03169
hypothetical protein; Provisional
653-901 1.65e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 42.27  E-value: 1.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  653 RPSKDKQESLNQEARVLSQTKAESSPDEDEPAELPAVTVTPAP-APDAKGDQEDDPGCQEDVDEAERRGEMTGEEGEKET 731
Cdd:PHA03169     6 RKAKRSRHTLRSSCRGHCKRHGGTREQAGRRRGTAARAAKPAPpAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKE 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  732 ETEGKKDEQEGETEAERKEDEQEeeteaegkeQEGETEAEGKEDEQEGETEAEG-KKDEQEGETEAEGKEEQEGETEAEG 810
Cdd:PHA03169    86 ERGQGGPSGSGSESVGSPTPSPS---------GSAEELASGLSPENTSGSSPESpASHSPPPSPPSHPGPHEPAPPESHN 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  811 KEDEQEGETEAEGkeeqegeteaeSKEVEQERETEAEGKDKHEGQGETQ-PDDTEVKDGEGETEANAEDQCEATQGEKGA 889
Cdd:PHA03169   157 PSPNQQPSSFLQP-----------SHEDSPEEPEPPTSEPEPDSPGPPQsETPTSSPPPQSPPDEPGEPQSPTPQQAPSP 225
                          250
                   ....*....|..
gi 1039792657  890 DGGGESDGGDSE 901
Cdd:PHA03169   226 NTQQAVEHEDEP 237
PRK10734 PRK10734
putative calcium/sodium:proton antiporter; Provisional
432-513 6.91e-03

putative calcium/sodium:proton antiporter; Provisional


Pssm-ID: 182684 [Multi-domain]  Cd Length: 325  Bit Score: 40.01  E-value: 6.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792657  432 VFVAlAIVCDEYFVPALgvithklqisedVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCA 511
Cdd:PRK10734    23 VFAA-SILCRTFGIPPL------------IIGMTVVGIGTSLPEIIVSVAASLHGQRDLAVGTALGSNITNILLILGLAA 89

                   ..
gi 1039792657  512 LF 513
Cdd:PRK10734    90 LI 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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