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Conserved domains on  [gi|1063209002|gb|AOO10135|]
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hypothetical protein W2390910_202 [Synechococcus phage S-RIM2]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02337 super family cl10424
putative high light inducible protein
 5-39 8.29e-12

putative high light inducible protein


The actual alignment was detected with superfamily member PHA02337:

Pssm-ID: 177361 [Multi-domain]  Cd Length: 35  Bit Score: 52.28  E-value: 8.29e-12
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 1063209002  5 FTDKAEKLNGRAAMIGFVAAVGSYLATGQVIPGVW 39
Cdd:PHA02337   1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPGIF 35
 
Name Accession Description Interval E-value
PHA02337 PHA02337
putative high light inducible protein
 5-39 8.29e-12

putative high light inducible protein


Pssm-ID: 177361 [Multi-domain]  Cd Length: 35  Bit Score: 52.28  E-value: 8.29e-12
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 1063209002  5 FTDKAEKLNGRAAMIGFVAAVGSYLATGQVIPGVW 39
Cdd:PHA02337   1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPGIF 35
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 5-33 1.21e-09

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 47.24  E-value: 1.21e-09
                         10        20
                 ....*....|....*....|....*....
gi 1063209002  5 FTDKAEKLNGRAAMIGFVAAVGSYLATGQ 33
Cdd:COG5743   25 FTPYAERLNGRLAMIGFVALLLIELLTGQ 53
 
Name Accession Description Interval E-value
PHA02337 PHA02337
putative high light inducible protein
 5-39 8.29e-12

putative high light inducible protein


Pssm-ID: 177361 [Multi-domain]  Cd Length: 35  Bit Score: 52.28  E-value: 8.29e-12
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 1063209002  5 FTDKAEKLNGRAAMIGFVAAVGSYLATGQVIPGVW 39
Cdd:PHA02337   1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPGIF 35
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 5-33 1.21e-09

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 47.24  E-value: 1.21e-09
                         10        20
                 ....*....|....*....|....*....
gi 1063209002  5 FTDKAEKLNGRAAMIGFVAAVGSYLATGQ 33
Cdd:COG5743   25 FTPYAERLNGRLAMIGFVALLLIELLTGQ 53
PLN00014 PLN00014
light-harvesting-like protein 3; Provisional
 9-24 2.15e-05

light-harvesting-like protein 3; Provisional


Pssm-ID: 177653 [Multi-domain]  Cd Length: 250  Bit Score: 38.30  E-value: 2.15e-05
                          10
                  ....*....|....*.
gi 1063209002   9 AEKLNGRAAMIGFVAA 24
Cdd:PLN00014  162 AELLNGRAAMVGFFMA 177
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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