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Conserved domains on  [gi|1065062]
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Chain F, TRP RNA-BINDING ATTENUATION PROTEIN

Protein Classification

trp RNA-binding attenuation protein MtrB( domain architecture ID 10014152)

trp RNA-binding attenuation protein MtrB is required for transcription attenuation control in the trp operon

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
1-75 1.12e-43

trp RNA-binding attenuation protein MtrB;


:

Pssm-ID: 183917  Cd Length: 75  Bit Score: 135.23  E-value: 1.12e-43
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1065062    1 MNQKHSSDFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
Cdd:PRK13251  1 MEMYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEEK 75
 
Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
1-75 1.12e-43

trp RNA-binding attenuation protein MtrB;


Pssm-ID: 183917  Cd Length: 75  Bit Score: 135.23  E-value: 1.12e-43
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1065062    1 MNQKHSSDFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
Cdd:PRK13251  1 MEMYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEEK 75
TrpBP pfam02081
Tryptophan RNA-binding attenuator protein;
6-73 2.25e-40

Tryptophan RNA-binding attenuator protein;


Pssm-ID: 396590  Cd Length: 68  Bit Score: 126.68  E-value: 2.25e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1065062     6 SSDFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSE 73
Cdd:pfam02081  1 SADYIVIKALENGVTVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTKHGEIESE 68
 
Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
1-75 1.12e-43

trp RNA-binding attenuation protein MtrB;


Pssm-ID: 183917  Cd Length: 75  Bit Score: 135.23  E-value: 1.12e-43
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1065062    1 MNQKHSSDFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
Cdd:PRK13251  1 MEMYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEEK 75
TrpBP pfam02081
Tryptophan RNA-binding attenuator protein;
6-73 2.25e-40

Tryptophan RNA-binding attenuator protein;


Pssm-ID: 396590  Cd Length: 68  Bit Score: 126.68  E-value: 2.25e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1065062     6 SSDFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSE 73
Cdd:pfam02081  1 SADYIVIKALENGVTVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTKHGEIESE 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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