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Conserved domains on  [gi|1071373367|ref|WP_069805781|]
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CHAP domain-containing protein [Thermogemmatispora onikobensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PspC_subgroup_2 super family cl41463
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 409-581 5.86e-23

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


The actual alignment was detected with superfamily member NF033839:

Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 104.08  E-value: 5.86e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 409 RFANTLTPTIPTPSLTP---TPFPTMPGEPGVSPVPSLVPTKTPAPS-----STPKPTATASP-TPKPTVTASP-TPKPT 478
Cdd:NF033839  274 KFKKGLTQDTPKEPGNKkpsAPKPGMQPSPQPEKKEVKPEPETPKPEvkpqlEKPKPEVKPQPeKPKPEVKPQLeTPKPE 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 479 VTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTATA 551
Cdd:NF033839  354 VKPQPeKPKPEVKPQPeKPKPEVKPQPeTPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKP 433

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1071373367 552 RPSV-TPTVTP---TASPTVRP---TATAGVTPSPTA 581
Cdd:NF033839  434 QPEKpKPEVKPqpeKPKPEVKPqpeTPKPEVKPQPEK 470
COG3942 COG3942
Surface antigen [Cell wall/membrane/envelope biogenesis];
73-210 6.81e-22

Surface antigen [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443142 [Multi-domain]  Cd Length: 129  Bit Score: 91.98  E-value: 6.81e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  73 SFSADGNPFAlcpgpfprGGNCVWWAWEQWHWLHYDLPLNWGNAADWISAAQRAGLAVGTQPRVGAIAVFPvadgVWAYS 152
Cdd:COG3942    13 NVVDPWNGYP--------YGQCTWYAAWRRAQLGGPIGSGWGNANNWADNARAAGYTVGSTPKVGAVAVFT----PGVAG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 153 SAGHVAFVTWVSPDGdTFNVTYQNYGDPtpvhlGIGYQVSVinqPRYQHGQLRFIYFP 210
Cdd:COG3942    81 PYGHVAVVESVNSDG-SILVSEMNWGGP-----GIYSTRTI---SAGNASSYGFIHPK 129
 
Name Accession Description Interval E-value
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 409-581 5.86e-23

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 104.08  E-value: 5.86e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 409 RFANTLTPTIPTPSLTP---TPFPTMPGEPGVSPVPSLVPTKTPAPS-----STPKPTATASP-TPKPTVTASP-TPKPT 478
Cdd:NF033839  274 KFKKGLTQDTPKEPGNKkpsAPKPGMQPSPQPEKKEVKPEPETPKPEvkpqlEKPKPEVKPQPeKPKPEVKPQLeTPKPE 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 479 VTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTATA 551
Cdd:NF033839  354 VKPQPeKPKPEVKPQPeKPKPEVKPQPeTPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKP 433

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1071373367 552 RPSV-TPTVTP---TASPTVRP---TATAGVTPSPTA 581
Cdd:NF033839  434 QPEKpKPEVKPqpeKPKPEVKPqpeTPKPEVKPQPEK 470
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 416-579 2.39e-22

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 102.15  E-value: 2.39e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTPTPFPTMP--------GEPGVSP-VPSLVPTKTPAPSsTPKPTATASP-TPKPTVTASP-TPKPTVTASP- 483
Cdd:NF033839  292 PSAPKPGMQPSPQPEKKevkpepetPKPEVKPqLEKPKPEVKPQPE-KPKPEVKPQLeTPKPEVKPQPeKPKPEVKPQPe 370

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 484 TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTATARPSV-T 556
Cdd:NF033839  371 KPKPEVKPQPeTPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPEKpK 450

                         170       180
                  ....*....|....*....|....*.
gi 1071373367 557 PTVTP---TASPTVRPTATagvTPSP 579
Cdd:NF033839  451 PEVKPqpeTPKPEVKPQPE---KPKP 473
COG3942 COG3942
Surface antigen [Cell wall/membrane/envelope biogenesis];
73-210 6.81e-22

Surface antigen [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443142 [Multi-domain]  Cd Length: 129  Bit Score: 91.98  E-value: 6.81e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  73 SFSADGNPFAlcpgpfprGGNCVWWAWEQWHWLHYDLPLNWGNAADWISAAQRAGLAVGTQPRVGAIAVFPvadgVWAYS 152
Cdd:COG3942    13 NVVDPWNGYP--------YGQCTWYAAWRRAQLGGPIGSGWGNANNWADNARAAGYTVGSTPKVGAVAVFT----PGVAG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 153 SAGHVAFVTWVSPDGdTFNVTYQNYGDPtpvhlGIGYQVSVinqPRYQHGQLRFIYFP 210
Cdd:COG3942    81 PYGHVAVVESVNSDG-SILVSEMNWGGP-----GIYSTRTI---SAGNASSYGFIHPK 129
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 416-579 2.31e-19

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 92.91  E-value: 2.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTP---TPFPTMPGEPGvSPVPSLVPTktpapSSTPKPTATASP-TPKPTVTASP-TPKPTVTASP-TPKPTV 489
Cdd:NF033839  358 PEKPKPEVKPqpeKPKPEVKPQPE-TPKPEVKPQ-----PEKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEV 431

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 490 TASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTvtaspTPKPTAT-ARPSVTPTVTPTA 563
Cdd:NF033839  432 KPQPeKPKPEVKPQPeKPKPEVKPQPeTPKPEVKPQPeKPKPEVKPQPeKPKPD-----NSKPQADdKKPSTPNNLSKDK 506

                         170
                  ....*....|....*.
gi 1071373367 564 SPTVRPTATAGVTPSP 579
Cdd:NF033839  507 QPSNQASTNEKATNKP 522
PHA03247 PHA03247
large tegument protein UL36; Provisional
 415-605 1.43e-15

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 81.91  E-value: 1.43e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLV-PTKTPAPSSTPKPTATASPTpKPTVTASPTPKPTVTASPTPKPTVTASP 493
Cdd:PHA03247  2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPErPRDDPAPGRVSRPRRARRLG-RAAQASSPPQRPRRRAARPTVGSLTSLA 2699

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  494 TP-KPTVTASPTPKPTVTASPTPkPTVTASPTPKPTVTASPTPKPTVTASPTP-KPTATARPSVTPTVTPTASPTVRPTA 571
Cdd:PHA03247  2700 DPpPPPPTPEPAPHALVSATPLP-PGPAAARQASPALPAAPAPPAVPAGPATPgGPARPARPPTTAGPPAPAPPAAPAAG 2778

                          170       180       190
                   ....*....|....*....|....*....|....
gi 1071373367  572 TAGVTPSPTAGTITRALASGEAGPLAMPNGLALS 605
Cdd:PHA03247  2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVL 2812
CHAP pfam05257
CHAP domain; This domain corresponds to an amidase function. Many of these proteins are ...
 92-176 1.96e-15

CHAP domain; This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Swiss:P43675, where it functions as a glutathionylspermidine amidase EC:3.5.1.78. This domain is found to be the catalytic domain of PlyCA. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyzes the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine.


Pssm-ID: 461605 [Multi-domain]  Cd Length: 83  Bit Score: 72.07  E-value: 1.96e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  92 GNCVWWAWeqwhWLHYDLPLNWGNAADWISAAQRAGLAVGTQPRVGAIAVFPVADGVWAYssaGHVAFVTWVSpDGdTFN 171
Cdd:pfam05257   8 GQCTWFVY----WRVAQLGIYLGNAGDWADAAAGAYKVGSTTPKVGDIVVFDPGGGGASY---GHVAIVEKVN-DG-SIT 78


                  ....*
gi 1071373367 172 VTYQN 176
Cdd:pfam05257  79 VSEQN 83
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 410-597 1.27e-14

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 78.42  E-value: 1.27e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 410 FANTLTPTIPTPSLTPTPFPTMPGEPGVsPVPSLVPTKTPAPSSTPKPTATA---SPTPKPTVT-ASPtpkptVTASPTP 485
Cdd:pfam05109 421 FSKAPESTTTSPTLNTTGFAAPNTTTGL-PSSTHVPTNLTAPASTGPTVSTAdvtSPTPAGTTSgASP-----VTPSPSP 494

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 486 KPTVTASPTPKPT--VTASPTPKPTVTaSPTPKPTvtaSPTPKPTVTASPTPKPTvTASPTPKPTATARPSVTPTVTPTA 563
Cdd:pfam05109 495 RDNGTESKAPDMTspTSAVTTPTPNAT-SPTPAVT---TPTPNATSPTLGKTSPT-SAVTTPTPNATSPTPAVTTPTPNA 569

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1071373367 564 S-PTVRPTA--TAGVTPSPTAGTITralaSGEAGPLA 597
Cdd:pfam05109 570 TiPTLGKTSptSAVTTPTPNATSPT----VGETSPQA 602
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
411-596 5.22e-11

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 66.31  E-value: 5.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVT 490
Cdd:COG3469    32 VTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTST 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 491 ASPTpkptvTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPT 570
Cdd:COG3469   112 VTTT-----STGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTPSATTTAT 186

                         170       180
                  ....*....|....*....|....*.
gi 1071373367 571 ATAGVTPSPTAGTITRALASGEAGPL 596
Cdd:COG3469   187 ATTASGATTPSATTTATTTGPPTPGL 212
PRK08581 PRK08581
amidase domain-containing protein;
80-167 4.32e-07

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 53.64  E-value: 4.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  80 PFALCPG--PFPRGgNCVWWAWEQWHWLHYDLPLNWGNAADWISAAQRAGLAVGTQPRVGAIAVFPVadGVW-AYSSAGH 156
Cdd:PRK08581  498 PFREYSGssPYPHG-QCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQARGYQVSHTPKRHAAVVFEA--GQAgADQHYGH 574

                          90
                  ....*....|.
gi 1071373367 157 VAFVTWVSPDG 167
Cdd:PRK08581  575 VAFVEKVNSDG 585
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 505-591 7.88e-07

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 52.20  E-value: 7.88e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 505 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKptvtasPTPKPTATARPSVTPTVTPTAsPTVRPTATAGVTPSPTAgti 584
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASG------MSAAPASAVEEKSPSEESATA-TAPESPSTSVPSSGSDA--- 146


                  ....*..
gi 1071373367 585 TRALASG 591
Cdd:TIGR00601 147 ASTLVVG 153
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 434-578 1.33e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 51.31  E-value: 1.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 434 EPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtvtasPTPKPTVTASP 513
Cdd:NF040712  196 LRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEP-----VGPGAAPAAEP 270

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 514 TPKpTVTASPTPKPTVTASPTPKPTVTASPTPkPTATARPSVTPTVTPTASPTVRPTATAG--VTPS 578
Cdd:NF040712  271 DEA-TRDAGEPPAPGAAETPEAAEPPAPAPAA-PAAPAAPEAEEPARPEPPPAPKPKRRRRraSVPS 335
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 449-596 1.41e-06

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 51.79  E-value: 1.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 449 PAPSSTPKPtATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPK-P 527
Cdd:cd23959   101 MAPDESLGP-FRAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQSSAsP 179

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 528 TVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTAtagvTPSPTAGTITRALASGEAGPL 596
Cdd:cd23959   180 GEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFA----APASAASFPAAPVANGEAATP 244
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 415-557 3.23e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 50.15  E-value: 3.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLT--PTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPtVTASPTPKPTVTAS 492
Cdd:NF040712  191 DFGRPLRPLAtvPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQP-EDEPVGPGAAPAAE 269

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367 493 PTPKpTVTASPTPKPTVTASPTPKPTVTASPT-PKPTVTASPTPKPTVTASPTPKPTATARPSVTP 557
Cdd:NF040712  270 PDEA-TRDAGEPPAPGAAETPEAAEPPAPAPAaPAAPAAPEAEEPARPEPPPAPKPKRRRRRASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 465-581 2.84e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 40.91  E-value: 2.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 465 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP---TPKPTVTASPTPKPTVTASPTPKPTVTA 541
Cdd:NF040712  195 PLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLAsarRRRAGVEQPEDEPVGPGAAPAAEPDEAT 274

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1071373367 542 SPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTA 581
Cdd:NF040712  275 RDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPA 314
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 495-588 8.54e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 39.60  E-value: 8.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 495 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVtaSPTPKPTATARPSVTPT-VTPTASPTVRPTATA 573
Cdd:NF041121   17 RAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAP--LPAPYPGSLAPPPPPPPgPAGAAPGAALPVRVP 94

                          90
                  ....*....|....*
gi 1071373367 574 GVTPSPTAGTITRAL 588
Cdd:NF041121   95 APPALPNPLELARAL 109
 
Name Accession Description Interval E-value
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 409-581 5.86e-23

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 104.08  E-value: 5.86e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 409 RFANTLTPTIPTPSLTP---TPFPTMPGEPGVSPVPSLVPTKTPAPS-----STPKPTATASP-TPKPTVTASP-TPKPT 478
Cdd:NF033839  274 KFKKGLTQDTPKEPGNKkpsAPKPGMQPSPQPEKKEVKPEPETPKPEvkpqlEKPKPEVKPQPeKPKPEVKPQLeTPKPE 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 479 VTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTATA 551
Cdd:NF033839  354 VKPQPeKPKPEVKPQPeKPKPEVKPQPeTPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKP 433

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1071373367 552 RPSV-TPTVTP---TASPTVRP---TATAGVTPSPTA 581
Cdd:NF033839  434 QPEKpKPEVKPqpeKPKPEVKPqpeTPKPEVKPQPEK 470
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 416-579 2.39e-22

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 102.15  E-value: 2.39e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTPTPFPTMP--------GEPGVSP-VPSLVPTKTPAPSsTPKPTATASP-TPKPTVTASP-TPKPTVTASP- 483
Cdd:NF033839  292 PSAPKPGMQPSPQPEKKevkpepetPKPEVKPqLEKPKPEVKPQPE-KPKPEVKPQLeTPKPEVKPQPeKPKPEVKPQPe 370

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 484 TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTATARPSV-T 556
Cdd:NF033839  371 KPKPEVKPQPeTPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPEKpK 450

                         170       180
                  ....*....|....*....|....*.
gi 1071373367 557 PTVTP---TASPTVRPTATagvTPSP 579
Cdd:NF033839  451 PEVKPqpeTPKPEVKPQPE---KPKP 473
COG3942 COG3942
Surface antigen [Cell wall/membrane/envelope biogenesis];
73-210 6.81e-22

Surface antigen [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443142 [Multi-domain]  Cd Length: 129  Bit Score: 91.98  E-value: 6.81e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  73 SFSADGNPFAlcpgpfprGGNCVWWAWEQWHWLHYDLPLNWGNAADWISAAQRAGLAVGTQPRVGAIAVFPvadgVWAYS 152
Cdd:COG3942    13 NVVDPWNGYP--------YGQCTWYAAWRRAQLGGPIGSGWGNANNWADNARAAGYTVGSTPKVGAVAVFT----PGVAG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 153 SAGHVAFVTWVSPDGdTFNVTYQNYGDPtpvhlGIGYQVSVinqPRYQHGQLRFIYFP 210
Cdd:COG3942    81 PYGHVAVVESVNSDG-SILVSEMNWGGP-----GIYSTRTI---SAGNASSYGFIHPK 129
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 416-579 2.31e-19

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 92.91  E-value: 2.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTP---TPFPTMPGEPGvSPVPSLVPTktpapSSTPKPTATASP-TPKPTVTASP-TPKPTVTASP-TPKPTV 489
Cdd:NF033839  358 PEKPKPEVKPqpeKPKPEVKPQPE-TPKPEVKPQ-----PEKPKPEVKPQPeKPKPEVKPQPeKPKPEVKPQPeKPKPEV 431

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 490 TASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTVTASP-TPKPTvtaspTPKPTAT-ARPSVTPTVTPTA 563
Cdd:NF033839  432 KPQPeKPKPEVKPQPeKPKPEVKPQPeTPKPEVKPQPeKPKPEVKPQPeKPKPD-----NSKPQADdKKPSTPNNLSKDK 506

                         170
                  ....*....|....*.
gi 1071373367 564 SPTVRPTATAGVTPSP 579
Cdd:NF033839  507 QPSNQASTNEKATNKP 522
PHA03247 PHA03247
large tegument protein UL36; Provisional
 415-605 1.43e-15

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 81.91  E-value: 1.43e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLV-PTKTPAPSSTPKPTATASPTpKPTVTASPTPKPTVTASPTPKPTVTASP 493
Cdd:PHA03247  2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPErPRDDPAPGRVSRPRRARRLG-RAAQASSPPQRPRRRAARPTVGSLTSLA 2699

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  494 TP-KPTVTASPTPKPTVTASPTPkPTVTASPTPKPTVTASPTPKPTVTASPTP-KPTATARPSVTPTVTPTASPTVRPTA 571
Cdd:PHA03247  2700 DPpPPPPTPEPAPHALVSATPLP-PGPAAARQASPALPAAPAPPAVPAGPATPgGPARPARPPTTAGPPAPAPPAAPAAG 2778

                          170       180       190
                   ....*....|....*....|....*....|....
gi 1071373367  572 TAGVTPSPTAGTITRALASGEAGPLAMPNGLALS 605
Cdd:PHA03247  2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVL 2812
CHAP pfam05257
CHAP domain; This domain corresponds to an amidase function. Many of these proteins are ...
 92-176 1.96e-15

CHAP domain; This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Swiss:P43675, where it functions as a glutathionylspermidine amidase EC:3.5.1.78. This domain is found to be the catalytic domain of PlyCA. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyzes the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine.


Pssm-ID: 461605 [Multi-domain]  Cd Length: 83  Bit Score: 72.07  E-value: 1.96e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  92 GNCVWWAWeqwhWLHYDLPLNWGNAADWISAAQRAGLAVGTQPRVGAIAVFPVADGVWAYssaGHVAFVTWVSpDGdTFN 171
Cdd:pfam05257   8 GQCTWFVY----WRVAQLGIYLGNAGDWADAAAGAYKVGSTTPKVGDIVVFDPGGGGASY---GHVAIVEKVN-DG-SIT 78


                  ....*
gi 1071373367 172 VTYQN 176
Cdd:pfam05257  79 VSEQN 83
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 410-597 1.27e-14

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 78.42  E-value: 1.27e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 410 FANTLTPTIPTPSLTPTPFPTMPGEPGVsPVPSLVPTKTPAPSSTPKPTATA---SPTPKPTVT-ASPtpkptVTASPTP 485
Cdd:pfam05109 421 FSKAPESTTTSPTLNTTGFAAPNTTTGL-PSSTHVPTNLTAPASTGPTVSTAdvtSPTPAGTTSgASP-----VTPSPSP 494

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 486 KPTVTASPTPKPT--VTASPTPKPTVTaSPTPKPTvtaSPTPKPTVTASPTPKPTvTASPTPKPTATARPSVTPTVTPTA 563
Cdd:pfam05109 495 RDNGTESKAPDMTspTSAVTTPTPNAT-SPTPAVT---TPTPNATSPTLGKTSPT-SAVTTPTPNATSPTPAVTTPTPNA 569

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1071373367 564 S-PTVRPTA--TAGVTPSPTAGTITralaSGEAGPLA 597
Cdd:pfam05109 570 TiPTLGKTSptSAVTTPTPNATSPT----VGETSPQA 602
PHA03247 PHA03247
large tegument protein UL36; Provisional
 411-595 1.76e-14

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 78.44  E-value: 1.76e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  411 ANTLTPTIPTPSLTPTPFPTMPGEPgVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVT 490
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATP-LPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA 2774

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  491 ASPTPKPTVTASPTPKPTVTASPTPKPtvtasPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPT 570
Cdd:PHA03247  2775 PAAGPPRRLTRPAVASLSESRESLPSP-----WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

                          170       180
                   ....*....|....*....|....*
gi 1071373367  571 ATAGVTPSPtAGTITRALASGEAGP 595
Cdd:PHA03247  2850 LPLGGSVAP-GGDVRRRPPSRSPAA 2873
PHA03247 PHA03247
large tegument protein UL36; Provisional
 416-591 2.64e-14

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 77.67  E-value: 2.64e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  416 PTIPTPSLTPTPFPTMPG-EPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTAS---PTPKPTVTASPTPKPTVTA 491
Cdd:PHA03247  2670 LGRAAQASSPPQRPRRRAaRPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAarqASPALPAAPAPPAVPAGPA 2749

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  492 SP-----TPKPTVTASPtPKPTVTASP--TPKPTVTASPTPKPTVTASPTPKPTvTASPTPKPTATARPSVTPTVTPtAS 564
Cdd:PHA03247  2750 TPggparPARPPTTAGP-PAPAPPAAPaaGPPRRLTRPAVASLSESRESLPSPW-DPADPPAAVLAPAAALPPAASP-AG 2826

                          170       180
                   ....*....|....*....|....*..
gi 1071373367  565 PTVRPTATAGVTPSPTAGTITRALASG 591
Cdd:PHA03247  2827 PLPPPTSAQPTAPPPPPGPPPPSLPLG 2853
PHA03247 PHA03247
large tegument protein UL36; Provisional
 416-599 5.67e-14

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 76.90  E-value: 5.67e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  416 PTIPTPSLTPTP-------FPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTV--------- 479
Cdd:PHA03247  2776 AAGPPRRLTRPAvaslsesRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPppslplggs 2855

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  480 ------------TASPTPKPTVTASP----TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 543
Cdd:PHA03247  2856 vapggdvrrrppSRSPAAKPAAPARPpvrrLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP 2935

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367  544 TPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAgtITRALASGEAGPLAMP 599
Cdd:PHA03247  2936 PPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVA--VPRFRVPQPAPSREAP 2989
PHA03247 PHA03247
large tegument protein UL36; Provisional
 419-591 1.03e-13

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 75.75  E-value: 1.03e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  419 PTPSLTPTPFPTMPGEPGVSPVPSlVPTKTPAPSSTPKPTA--------------TASPTPKPTVTASP----TPKPTVT 480
Cdd:PHA03247  2814 PAAALPPAASPAGPLPPPTSAQPT-APPPPPGPPPPSLPLGgsvapggdvrrrppSRSPAAKPAAPARPpvrrLARPAVS 2892

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  481 ASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVT 560
Cdd:PHA03247  2893 RSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRV 2972

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1071373367  561 PTASPTVRPTATAGVTPSPTAGTITRALASG 591
Cdd:PHA03247  2973 AVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003
PHA03247 PHA03247
large tegument protein UL36; Provisional
 416-599 1.36e-13

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 75.36  E-value: 1.36e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  416 PTIPTPSLTPTPF-PTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASP- 493
Cdd:PHA03247  2703 PPPPTPEPAPHALvSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRr 2782

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  494 TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPS--VTPTVTPTAS------- 564
Cdd:PHA03247  2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPgpPPPSLPLGGSvapggdv 2862

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1071373367  565 ---PTVRPTATAGVTPS-PTAGTITRALASGEAGPLAMP 599
Cdd:PHA03247  2863 rrrPPSRSPAAKPAAPArPPVRRLARPAVSRSTESFALP 2901
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 401-592 1.57e-13

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 74.95  E-value: 1.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 401 TTGLLLYNRFANTLT------PTIPTPSLT-PTPFPTMPGEPGVSPVPSLVP--TKTPAPSSTPKPTATASPTPKPTvta 471
Cdd:pfam05109 445 TTGLPSSTHVPTNLTapastgPTVSTADVTsPTPAGTTSGASPVTPSPSPRDngTESKAPDMTSPTSAVTTPTPNAT--- 521

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 472 SPTPKPTvtaSPTPKPTvtaSPTPKPTVTASPTPKPTVTASpTPKPTVTaSPTPKPTVTASPTPKPTvTASPTPKPTATA 551
Cdd:pfam05109 522 SPTPAVT---TPTPNAT---SPTLGKTSPTSAVTTPTPNAT-SPTPAVT-TPTPNATIPTLGKTSPT-SAVTTPTPNATS 592

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1071373367 552 rPSVTPTvTPTASPTVRPTATAGVTPSPTA--GTITRALASGE 592
Cdd:pfam05109 593 -PTVGET-SPQANTTNHTLGGTSSTPVVTSppKNATSAVTTGQ 633
PHA03247 PHA03247
large tegument protein UL36; Provisional
 409-604 1.76e-13

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 74.97  E-value: 1.76e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  409 RFANTLTPTIPTPSLTP--TPFPTMPGEPGVSPVPSlvptkTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPK 486
Cdd:PHA03247  2759 RPPTTAGPPAPAPPAAPaaGPPRRLTRPAVASLSES-----RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  487 PTVTASPTPKPTVTAS----------------PTPKPTVTASPTP-KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTA 549
Cdd:PHA03247  2834 AQPTAPPPPPGPPPPSlplggsvapggdvrrrPPSRSPAAKPAAPaRPPVRRLARPAVSRSTESFALPPDQPERPPQPQA 2913

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367  550 TARPSVTPTVTPTASPTVRPtATAGVTPSPTAGTITRALASGEAGPLAMPNGLAL 604
Cdd:PHA03247  2914 PPPPQPQPQPPPPPQPQPPP-PPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGAL 2967
PHA03247 PHA03247
large tegument protein UL36; Provisional
 421-599 3.53e-13

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 74.20  E-value: 3.53e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  421 PSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASP--TPKPTVTASPTPKPTVTASPTPKPTVTASPT---P 495
Cdd:PHA03247  2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPaaGPPRRLTRPAVASLSESRESLPSPWDPADPPaavL 2812

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  496 KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTV-----------TASPTPKPTATARPSVT----PTVT 560
Cdd:PHA03247  2813 APAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVapggdvrrrppSRSPAAKPAAPARPPVRrlarPAVS 2892

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1071373367  561 PTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMP 599
Cdd:PHA03247  2893 RSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP 2931
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 402-552 4.64e-13

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 72.84  E-value: 4.64e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 402 TGLLLYNRFANTLTPTIPTPSLTPTPFPTMPGE-PGVSPVPSLVPTKTPAPSSTPKPTATASPTPK--PTVTASPTPKPT 478
Cdd:PHA03269    6 IILIITIACINLIIANLNTNIPIPELHTSAATQkPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAqaPTPAASEKFDPA 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 479 VtaSPTPKPTVTASPTPKPTVTASPTPKPTVtaSPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATAR 552
Cdd:PHA03269   86 P--APHQAASRAPDPAVAPQLAAAPKPDAAE--AFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFAYTR 155
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 411-596 7.35e-13

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 72.64  E-value: 7.35e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFpTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVT 490
Cdd:pfam05109 441 APNTTTGLPSSTHVPTNL-TAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPN 519

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 491 ASpTPKPTVTaSPTPKPTVTASPTPKPTvTASPTPKPTVTaSPTPKPTvtaSPTPKPTATARPSVTPTVTPTaSPTVRPT 570
Cdd:pfam05109 520 AT-SPTPAVT-TPTPNATSPTLGKTSPT-SAVTTPTPNAT-SPTPAVT---TPTPNATIPTLGKTSPTSAVT-TPTPNAT 591

                         170       180
                  ....*....|....*....|....*.
gi 1071373367 571 ATAGVTPSPTAGTITRALASGEAGPL 596
Cdd:pfam05109 592 SPTVGETSPQANTTNHTLGGTSSTPV 617
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 445-583 8.08e-13

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 72.07  E-value: 8.08e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 445 PTKTPAPS-STPKPTATASPTPKPTVTASPTPKPTVTasptpkPTVTASPTPKPTVtaSPTPKPTVTASPTPKPTVTAS- 522
Cdd:PHA03269   23 NTNIPIPElHTSAATQKPDPAPAPHQAASRAPDPAVA------PTSAASRKPDLAQ--APTPAASEKFDPAPAPHQAASr 94

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 523 ---PTPKPTVTASPTPKPTVtaSPTPKPTATARPSVTPTVTPTASPTvrPTATAGVTPSPTAGT 583
Cdd:PHA03269   95 apdPAVAPQLAAAPKPDAAE--AFTSAAQAHEAPADAGTSAASKKPD--PAAHTQHSPPPFAYT 154
PHA03247 PHA03247
large tegument protein UL36; Provisional
 425-605 1.27e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 72.28  E-value: 1.27e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  425 PTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPK--PTVTASPTPKPTVTASPTPKPTVTAS 502
Cdd:PHA03247  2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRvsRPRRARRLGRAAQASSPPQRPRRRAA 2688

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  503 PTPKPTVTASPTP-KPTVTASPTPKPTVTASPTPkPTVTASPTPKPTATARPSVTPTVTPTASP-TVRPTATAGVTPSPT 580
Cdd:PHA03247  2689 RPTVGSLTSLADPpPPPPTPEPAPHALVSATPLP-PGPAAARQASPALPAAPAPPAVPAGPATPgGPARPARPPTTAGPP 2767

                          170       180
                   ....*....|....*....|....*
gi 1071373367  581 AGTITRALASGEAGPLAMPNGLALS 605
Cdd:PHA03247  2768 APAPPAAPAAGPPRRLTRPAVASLS 2792
PHA03247 PHA03247
large tegument protein UL36; Provisional
 419-628 1.54e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 71.89  E-value: 1.54e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  419 PTPSLTPTPFPTMPGEPGVSPVPSLVPTK-----------TPAPSSTPK--------PTATASPTPKPTVTASPTPKP-- 477
Cdd:PHA03247  2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEpavtsrarrpdAPPQSARPRapvddrgdPRGPAPPSPLPPDTHAPDPPPps 2630

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  478 ------------TVTASPTPKPTVTASPT-----------PKPTVTASPTPKPTVTASPTPKPTVTASPTP-KPTVTASP 533
Cdd:PHA03247  2631 pspaanepdphpPPTVPPPERPRDDPAPGrvsrprrarrlGRAAQASSPPQRPRRRAARPTVGSLTSLADPpPPPPTPEP 2710

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  534 TPKPTVTASPTPKPTATARPSVTPtvtPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPlAMPNGLALSLNPGDGGG 613
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQASPA---LPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP-APPAAPAAGPPRRLTRP 2786

                          250
                   ....*....|....*
gi 1071373367  614 KDLGGAQSSQAQLRP 628
Cdd:PHA03247  2787 AVASLSESRESLPSP 2801
PHA03378 PHA03378
EBNA-3B; Provisional
 416-595 1.09e-11

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 68.94  E-value: 1.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTPTPFPTmPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTvTASPTPKPTVTASPTPKPTVTASPTP 495
Cdd:PHA03378  646 LVFPTPHQPPQVEIT-PYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPP-PRAPTPMRPPAAPPGRAQRPAAATGR 723

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 496 KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP---TPKPTATARPsvTPTVTPTASPTVRPTAT 572
Cdd:PHA03378  724 ARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPgapTPQPPPQAPP--APQQRPRGAPTPQPPPQ 801

                         170       180
                  ....*....|....*....|...
gi 1071373367 573 AGvtpsPTAGTITRALASGEAGP 595
Cdd:PHA03378  802 AG----PTSMQLMPRAAPGQQGP 820
PHA03378 PHA03378
EBNA-3B; Provisional
 386-583 1.37e-11

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 68.56  E-value: 1.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 386 WGPGWEIYTGRFNGQTTGLLLYNRfantlTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKptatASPTP 465
Cdd:PHA03378  653 QPPQVEITPYKPTWTQIGHIPYQP-----SPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPA----AATGR 723

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 466 KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP---TPKPTVTASPTPKPTVTASPTPKPTVTAS 542
Cdd:PHA03378  724 ARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPgapTPQPPPQAPPAPQQRPRGAPTPQPPPQAG 803

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 543 PT------PKPTATARPS--VTPTVTPTASPTVRPT----------ATAGVTPSPTAGT 583
Cdd:PHA03378  804 PTsmqlmpRAAPGQQGPTkqILRQLLTGGVKRGRPSlkkpaalerqAAAGPTPSPGSGT 862
PHA03247 PHA03247
large tegument protein UL36; Provisional
 413-598 1.84e-11

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 68.43  E-value: 1.84e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  413 TLTPTIPTPSLTPTPfPTMPGEPGVSP-------VPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTP 485
Cdd:PHA03247  2833 SAQPTAPPPPPGPPP-PSLPLGGSVAPggdvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP 2911

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  486 KPTVTASPTPKPTVTASPTPKPtvtaSPTPKPTVTASPTPKPTVTASPTPkptVTASPTPKPTATARPSVTPTVTPTASP 565
Cdd:PHA03247  2912 QAPPPPQPQPQPPPPPQPQPPP----PPPPRPQPPLAPTTDPAGAGEPSG---AVPQPWLGALVPGRVAVPRFRVPQPAP 2984

                          170       180       190
                   ....*....|....*....|....*....|...
gi 1071373367  566 TVRptATAGVTPSPTAGTITRalASGEAGPLAM 598
Cdd:PHA03247  2985 SRE--APASSTPPLTGHSLSR--VSSWASSLAL 3013
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
427-608 2.61e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 67.57  E-value: 2.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 427 PFPTMPGEPGvSPVPSLVPTKTPAPSSTPKPTATASPTPkptvtASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPK 506
Cdd:PRK07003  360 PAVTGGGAPG-GGVPARVAGAVPAPGARAAAAVGASAVP-----AVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPP 433

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 507 PT--VTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTI 584
Cdd:PRK07003  434 ATadRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP 513

                         170       180
                  ....*....|....*....|....
gi 1071373367 585 TRALASGEAGPLAMPNGLALSLNP 608
Cdd:PRK07003  514 AAASREDAPAAAAPPAPEARPPTP 537
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
411-596 5.22e-11

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 66.31  E-value: 5.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVT 490
Cdd:COG3469    32 VTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTST 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 491 ASPTpkptvTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPT 570
Cdd:COG3469   112 VTTT-----STGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTPSATTTAT 186

                         170       180
                  ....*....|....*....|....*.
gi 1071373367 571 ATAGVTPSPTAGTITRALASGEAGPL 596
Cdd:COG3469   187 ATTASGATTPSATTTATTTGPPTPGL 212
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 422-577 7.02e-11

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 65.99  E-value: 7.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 422 SLTPTPFPTMPGEPGVspVPSLVptkTPAPSSTPKPTATASPTPK-PTVTASPTPKPTVTASPTPKPTVTASPTPkPTVT 500
Cdd:PRK14950  340 QLRTTSYGQLPLELAV--IEALL---VPVPAPQPAKPTAAAPSPVrPTPAPSTRPKAAAAANIPPKEPVRETATP-PPVP 413

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 501 ASPTPKPTVTASPT-PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATAR-----PSVTPTVtPTASPTVRPTATAG 574
Cdd:PRK14950  414 PRPVAPPVPHTPESaPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQleaiwKQILRDV-PPRSPAVQALLSSG 492


                  ...
gi 1071373367 575 VTP 577
Cdd:PRK14950  493 VRP 495
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
419-589 7.14e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 66.05  E-value: 7.14e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 419 PTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSStpkPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 498
Cdd:PRK12323  428 PAPEALAAARQASARGPGGAPAPAPAPAAAPAAAA---RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPP 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 499 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTvTPTASPTVRPTATAGVTPS 578
Cdd:PRK12323  505 EFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPR-PPRASASGLPDMFDGDWPA 583

                         170
                  ....*....|.
gi 1071373367 579 PTAGTITRALA 589
Cdd:PRK12323  584 LAARLPVRGLA 594
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
448-599 1.46e-10

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 64.18  E-value: 1.46e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 448 TPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTP-----KPTVTASPTPKPTVTASPTPKPtvTASPTPKPTVTAS 522
Cdd:pfam16014   5 SPRPSILRKKPATEGAKPKPDIHVAVAPPVTVAVEALPgqnseQQTASASPPSQHPAQAIPTILA--PAAPPSQPSVVLS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 523 PTPKPTVTASPTPK--PTVTASPTPKPTATARPSVTPTVTPTA-----------SPTVRPTATAGVTPSPTAGTITRALA 589
Cdd:pfam16014  83 TLPAAMAVTPPIPAsmANVVAPPTQPAASSTAACAVSSVLPEIkikqeaepmdtSQSVPPLTPTSISPALTSLANNLSVP 162

                         170
                  ....*....|
gi 1071373367 590 SGEAGPLAMP 599
Cdd:pfam16014 163 AGDLLPGASP 172
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 411-629 1.57e-10

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 64.56  E-value: 1.57e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSL---TPTPFPTmPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVT---------------AS 472
Cdd:PLN03209  307 AETTAPLTPMEELlakIPSQRVP-PKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPrplspytayedlkppTS 385

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 473 PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTAS-PTPKPTVTASP-TP-------KPTVTASPTPKPTVTASP 543
Cdd:PLN03209  386 PIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVePAQVEAKKTRPlSPyaryedlKPPTSPSPTAPTGVSPSV 465

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 544 TPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMPNGLALSLNPGDGGGKDLGGAQSSQ 623
Cdd:PLN03209  466 SSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQ 545


                  ....*.
gi 1071373367 624 AQLRPN 629
Cdd:PLN03209  546 HHAQPK 551
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
393-602 1.59e-10

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 64.77  E-value: 1.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 393 YTGRFNGQTTGLLLYNRFANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTP--KPTATASPTPKPTVT 470
Cdd:COG3469     2 SSVSTAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTaaSSTAATSSTTSTTAT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 471 ASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPTVTASPTPKPTVTASPTPKPTAT 550
Cdd:COG3469    82 ATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTT-SSTAGSTTTSGASATSSAGSTTTTTTVSGTETAT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 551 ARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMPNGL 602
Cdd:COG3469   161 GGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGL 212
PRK10905 PRK10905
cell division protein DamX; Validated
 430-542 2.54e-10

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 63.03  E-value: 2.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 430 TMPGEPG-VSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPtpKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 508
Cdd:PRK10905  122 TLPTEPAtVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPK--KPQATAKTEPKPVAQTPKRTEPAAPVASTKAPA 199

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1071373367 509 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 542
Cdd:PRK10905  200 ATSTPAPKETATTAPVQTASPAQTTATPAAGGKT 233
PRK10819 PRK10819
transport protein TonB; Provisional
 405-551 3.54e-10

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 61.24  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 405 LLYNRFANTLT-PTIPTP-SLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPtatasPTPKPTVTASPTPKPTVTAS 482
Cdd:PRK10819   30 LLYTSVHQVIElPAPAQPiSVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP-----PKEAPVVIPKPEPKPKPKPK 104

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 483 PTPKPTVTASPTPKPTV-TASPTPKPTVTASPTPKPTVTASPT--PKPTVTASPTPKPTVTASPTPKPTATA 551
Cdd:PRK10819  105 PKPKPVKKVEEQPKREVkPVEPRPASPFENTAPARPTSSTATAaaSKPVTSVSSGPRALSRNQPQYPARAQA 176
PRK10819 PRK10819
transport protein TonB; Provisional
 449-554 3.54e-10

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 61.24  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 449 PAPSSTPKPTATASPTPKPTVTASP-TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTV-TASPTPKPTVTASPTPK 526
Cdd:PRK10819   60 PPQAVQPPPEPVVEPEPEPEPIPEPpKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVkPVEPRPASPFENTAPAR 139

                          90       100       110
                  ....*....|....*....|....*....|
gi 1071373367 527 PTVTASPT--PKPTVTASPTPKPTATARPS 554
Cdd:PRK10819  140 PTSSTATAaaSKPVTSVSSGPRALSRNQPQ 169
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 417-595 5.34e-10

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 63.40  E-value: 5.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 417 TIPTPSLT-PTPFPTMPGEPGVSPvpSLVPTKTPAPSSTPKPTATaSPTPKPTvtaSPTPKPTVTASPTPKPTvTASPTP 495
Cdd:pfam05109 514 TTPTPNATsPTPAVTTPTPNATSP--TLGKTSPTSAVTTPTPNAT-SPTPAVT---TPTPNATIPTLGKTSPT-SAVTTP 586

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 496 KPTVTaSPTPKPTVTASPTPKPT--------VTASPtPKPTVTASPTPKPTVTASPTpkPTATARP-SVTPTVTPTAS-- 564
Cdd:pfam05109 587 TPNAT-SPTVGETSPQANTTNHTlggtsstpVVTSP-PKNATSAVTTGQHNITSSST--SSMSLRPsSISETLSPSTSdn 662

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1071373367 565 --------PTVRPTATAGVTPSPTAGTITRALASGEAGP 595
Cdd:pfam05109 663 stshmpllTSAHPTGGENITQVTPASTSTHHVSTSSPAP 701
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 473-585 7.16e-10

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 62.44  E-value: 7.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 473 PTPKPTvTASPTPKPTVTASPTPKPTVTASPTPKPTV--TASPTPKPTVTASPTPKPTVTASPTPKPTVTAS----PTPK 546
Cdd:PHA03269   23 NTNIPI-PELHTSAATQKPDPAPAPHQAASRAPDPAVapTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASrapdPAVA 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1071373367 547 PTATARPSVTPTVTPTASPT------VRPTATAGVTPSPTAGTIT 585
Cdd:PHA03269  102 PQLAAAPKPDAAEAFTSAAQaheapaDAGTSAASKKPDPAAHTQH 146
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
429-607 8.64e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 62.56  E-value: 8.64e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 429 PTMPGE-PGVSPVPSLVPTKTPAPSSTPKPTATAS-PTPKPTVTASPTPKPTVTASPTPKPT--VTASPTPKPTVTASPT 504
Cdd:PRK07003  374 ARVAGAvPAPGARAAAAVGASAVPAVTAVTGAAGAaLAPKAAAAAAATRAEAPPAAPAPPATadRGDDAADGDAPVPAKA 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 505 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPkPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAgTI 584
Cdd:PRK07003  454 NARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP-RAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA-PE 531

                         170       180
                  ....*....|....*....|...
gi 1071373367 585 TRALASGEAGPLAMPNGLALSLN 607
Cdd:PRK07003  532 ARPPTPAAAAPAARAGGAAAALD 554
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 434-565 9.89e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 62.31  E-value: 9.89e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 434 EPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPkptvtASPTPKPTVTASP 513
Cdd:PRK07764  382 ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS-----PAGNAPAGGAPSP 456

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 514 TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASP 565
Cdd:PRK07764  457 PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508
PHA03378 PHA03378
EBNA-3B; Provisional
 417-586 1.03e-09

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 62.39  E-value: 1.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 417 TIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPT--ATASPTPKPTVTASPTPKPTVTASPTPKPTVTASP- 493
Cdd:PHA03378  693 TMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRArpPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPg 772

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 494 --TPKPTVTASPTPKPTVTASPTPKPTVTASPT------PKPTVTASPTP--------------KPTV----------TA 541
Cdd:PHA03378  773 apTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTsmqlmpRAAPGQQGPTKqilrqlltggvkrgRPSLkkpaalerqaAA 852

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367 542 SPTPKPTATAR-----------PSVTPTVTPTASPTVRPTATAGVTPSPTAGTITR 586
Cdd:PHA03378  853 GPTPSPGSGTSdkivqapvfypPVLQPIQVMRQLGSVRAAAASTVTQAPTEYTGER 908
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 415-580 1.12e-09

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 62.48  E-value: 1.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTP------SLTPTPFPTMPGEPGVSPVPSlvPTKTPAPSSTPKPTATASPTPKPTVTASPtPKPTVTASPTPKPT 488
Cdd:pfam03154 145 SPSIPSPqdnesdSDSSAQQQILQTQPPVLQAQS--GAASPPSPPPPGTTQAATAGPTPSAPSVP-PQGSPATSQPPNQT 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 489 VTASPtPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTAS--PTPKPTATARPSVTPTVTPTASPT 566
Cdd:pfam03154 222 QSTAA-PHTLIQQTPTLHPQRLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQmpPMPHSLQTGPSHMQHPVPPQPFPL 300

                         170
                  ....*....|....
gi 1071373367 567 VRPTATAGVTPSPT 580
Cdd:pfam03154 301 TPQSSQSQVPPGPS 314
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 416-600 1.23e-09

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 62.09  E-value: 1.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPslTPTPFPTMPGEPGVSPVPSLVPTKTpAPSSTPKPTATASPTPKPTVTASPtPKPTVTASPTPKPTVTASPTP 495
Cdd:pfam03154 172 PVLQAQ--SGAASPPSPPPPGTTQAATAGPTPS-APSVPPQGSPATSQPPNQTQSTAA-PHTLIQQTPTLHPQRLPSPHP 247

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 496 KPTVTASPTPKPTVTASPTPKPTVTAS--PTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTAS-PTVRPTAT 572
Cdd:pfam03154 248 PLQPMTQPPPPSQVSPQPLPQPSLHGQmpPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPgQSQQRIHT 327

                         170       180
                  ....*....|....*....|....*...
gi 1071373367 573 AGVTPSPTAGTITRALASGEAgPLAMPN 600
Cdd:pfam03154 328 PPSQSQLQSQQPPREQPLPPA-PLSMPH 354
TonB_N pfam16031
TonB polyproline region; TonB from Escherichia coli and its homologs are critical for the ...
 449-588 1.33e-09

TonB polyproline region; TonB from Escherichia coli and its homologs are critical for the uptake of siderophores through the outer membrane of Gram-negative bacteria using chemiosmotic energy. The proline-rich segment of TonB exists in a PPII-like conformation. The result implies that the proline-rich segment of TonB possesses a length of more than 15 nm, sufficient to span the periplasm of Gram-negative bacteria.


Pssm-ID: 435086 [Multi-domain]  Cd Length: 136  Bit Score: 57.34  E-value: 1.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 449 PAPSSTPKPTATASPTPKPtvtasPTPKPTVTASPTPKPTVTASPTPKPTVTASPtPKPTVTASPTPKPTvtASPTPKPt 528
Cdd:pfam16031   7 PSPAQQPISVTMVNPADLE-----PPPPAAPAPQPAPEPVVEPEPEPEPEPLPEP-PAPVVIHKPKPKPK--PKPKPKP- 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 529 VTASPTPKPTV--TASPTPKPTATARPSVTPTVTPTASPTVRPTAtagvTPSPTAGTITRAL 588
Cdd:pfam16031  78 VKKVEVPKREVkpVEPRPESPFENAPSALVAPARPVSSTATAATA----SPSVSSASGPRAL 135
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 416-564 1.37e-09

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 62.09  E-value: 1.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPsSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP 495
Cdd:pfam03154 403 STHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQ-SLPPPAASHPPTSGLHQVPSQSPFPQHPFVPGGPPPITPPSGP 481

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1071373367 496 KPTVTAS-PTPKPTVTASPT---PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTAtarPSVTPTVTPTAS 564
Cdd:pfam03154 482 PTSTSSAmPGIQPPSSASVSssgPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRS---PSPEPTVVNTPS 551
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
411-588 1.62e-09

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 61.31  E-value: 1.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVT 490
Cdd:COG3469    36 AATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTT 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 491 ASPTPKPTVTASP-TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTP-----TVTPTAS 564
Cdd:COG3469   116 STGAGSVTSTTSStAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTPSATTtatatTASGATT 195

                         170       180
                  ....*....|....*....|....
gi 1071373367 565 PTvrPTATAGVTPSPTAGTITRAL 588
Cdd:COG3469   196 PS--ATTTATTTGPPTPGLPKHVL 217
PRK11633 PRK11633
cell division protein DedD; Provisional
 429-551 1.71e-09

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 58.86  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 429 PTMPgEPGVSPVPSLVPTKTPAPSSTPKPTAT----ASPTPKPTVTASPTPKPTVTASPTPKPTvtasPTPKPTVTASPT 504
Cdd:PRK11633   42 PLVP-KPGDRDEPDMMPAATQALPTQPPEGAAeavrAGDAAAPSLDPATVAPPNTPVEPEPAPV----EPPKPKPVEKPK 116

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1071373367 505 PKptvtasPTPKPTVTASPTPKptvtasPTPKPtvTASPTPKPTATA 551
Cdd:PRK11633  117 PK------PKPQQKVEAPPAPK------PEPKP--VVEEKAAPTGKA 149
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
415-605 1.71e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 61.43  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPT-----ATASPTPKPTVTASPTPKPTVTASPTPKPTV 489
Cdd:PRK12323  373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAAravaaAPARRSPAPEALAAARQASARGPGGAPAPAP 452

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 490 TASPTPKPTV---TASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPT 566
Cdd:PRK12323  453 APAAAPAAAArpaAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATA 532

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1071373367 567 VRPTATAGVTPSPTAGTITRALASGEAGPLAMPNGLALS 605
Cdd:PRK12323  533 DPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 422-581 2.14e-09

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 61.73  E-value: 2.14e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  422 SLTPTPFPTMPGEPGVSPVP-SLVPTKTPAPSSTPKPTATASPTPKPtvtaSPTPKPTVTASPTPKPTVTASPTPKPtVT 500
Cdd:PHA03307    58 GAAACDRFEPPTGPPPGPGTeAPANESRSTPTWSLSTLAPASPAREG----SPTPPGPSSPDPPPPTPPPASPPPSP-AP 132

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  501 ASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVT-PTASPTVRPTATAGVTPSP 579
Cdd:PHA03307   133 DLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEpPPSTPPAAASPRPPRRSSP 212


                   ..
gi 1071373367  580 TA 581
Cdd:PHA03307   213 IS 214
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 413-599 2.43e-09

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 61.09  E-value: 2.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 413 TLTP--TIPTPSLT-PTPFPTMPGEPGVSPVPSLVptkTPAPSSTPKPTATASPTPKPTV---------TASPTPKPTVT 480
Cdd:pfam05109 515 TPTPnaTSPTPAVTtPTPNATSPTLGKTSPTSAVT---TPTPNATSPTPAVTTPTPNATIptlgktsptSAVTTPTPNAT 591

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 481 ASPTPKPTVTASPTPKPTVTASPTPkptVTASPtPKPTVTASPTPKPTVTASPTPKPTV-------TASPTPKPTATARP 553
Cdd:pfam05109 592 SPTVGETSPQANTTNHTLGGTSSTP---VVTSP-PKNATSAVTTGQHNITSSSTSSMSLrpssiseTLSPSTSDNSTSHM 667

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 554 SVTPTVTPTASPT---VRPTAT-----AGVTPSPTAGTITRALASGEAGPLAMP 599
Cdd:pfam05109 668 PLLTSAHPTGGENitqVTPASTsthhvSTSSPAPRPGTTSQASGPGNSSTSTKP 721
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 457-597 2.71e-09

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 60.74  E-value: 2.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 457 PTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPK 536
Cdd:pfam17823 115 LAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSA 194

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 537 PTVTASPTPKPTATARPSVTP---TVTPTASptvrpTATAGV-TPSPTAGTITRALASGEAGPLA 597
Cdd:pfam17823 195 PTTAASSAPATLTPARGISTAataTGHPAAG-----TALAAVgNSSPAAGTVTAAVGTVTPAALA 254
Herpes_U47 pfam05467
Herpesvirus glycoprotein U47;
448-576 3.10e-09

Herpesvirus glycoprotein U47;


Pssm-ID: 283192 [Multi-domain]  Cd Length: 677  Bit Score: 60.68  E-value: 3.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 448 TPAPSSTPKPTATASPTPKPTVTASPTPKPT-VTASPTPKPTVTASPTPK-PTVTASPTP--KPTVTASPTPKPTVTASP 523
Cdd:pfam05467 238 TTTPSSTPSSTSASITSPHIPSTNTPTPEPSpVTKNFTELQTDTIKVTPNtPTITAQTTEsiKKVVKRSDFPRPMYTPTD 317

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 524 TPKPTVTASPTPKPTV-TASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVT 576
Cdd:pfam05467 318 IPTLTIRRNATIKTEQnTENPTENPKSPPKPTNFENTTIRIPETFESTTVATNT 371
PRK10819 PRK10819
transport protein TonB; Provisional
 450-573 3.16e-09

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 58.54  E-value: 3.16e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 450 APSSTPKPTAtASPTPKPTVTASPTPKPtVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTV-TASPTPKPT 528
Cdd:PRK10819   54 APADLEPPQA-VQPPPEPVVEPEPEPEP-IPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVkPVEPRPASP 131

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1071373367 529 VTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATA 573
Cdd:PRK10819  132 FENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYPARAQA 176
PHA03247 PHA03247
large tegument protein UL36; Provisional
 415-605 3.34e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.11  E-value: 3.34e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 494
Cdd:PHA03247  2877 APARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  495 ---PKPTVTA------------SPTPKPTVTASPTPKPTVTASPTPKPTVTAS-------PTPKP------------TVT 540
Cdd:PHA03247  2957 gavPQPWLGAlvpgrvavprfrVPQPAPSREAPASSTPPLTGHSLSRVSSWASslalheeTDPPPvslkqtlwppddTED 3036

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367  541 ASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGtiTRALASGEAGPLAMPNGLALS 605
Cdd:PHA03247  3037 SDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAG--ARESPSSQFGPPPLSANAALS 3099
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 420-608 3.58e-09

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 60.36  E-value: 3.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 420 TPSLTPTPFPTMPG---EPGVSPVPSLVPTKTPAPSSTPKPTATASPTPK----PTVTASPTPKPTVTASPTPKPTVTAS 492
Cdd:pfam17823  91 TPHGTDLSEPATREgaaDGAASRALAAAASSSPSSAAQSLPAAIAALPSEafsaPRAAACRANASAAPRAAIAAASAPHA 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 493 PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTpkpTVTASPTPKPTATARPSVTPTVTPTASPTvrpTAT 572
Cdd:pfam17823 171 ASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGI---STAATATGHPAAGTALAAVGNSSPAAGTV---TAA 244

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1071373367 573 AGVTPSPTAGTITRALAS--GEAGPLAMPNGLALSLNP 608
Cdd:pfam17823 245 VGTVTPAALATLAAAAGTvaSAAGTINMGDPHARRLSP 282
PRK10819 PRK10819
transport protein TonB; Provisional
 455-579 3.73e-09

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 58.16  E-value: 3.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 455 PKPTATASPTpkpTVTASPTPKPTVtASPTPKPTVTASPTPKPtVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 534
Cdd:PRK10819   42 PAPAQPISVT---MVAPADLEPPQA-VQPPPEPVVEPEPEPEP-IPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQ 116

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1071373367 535 PKPTV-TASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSP 579
Cdd:PRK10819  117 PKREVkPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRA 162
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 411-590 4.56e-09

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 59.97  E-value: 4.56e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTatasptpkptvtasPTPKPTVTASPTPKPTVT 490
Cdd:pfam17823 277 ARRLSPAKHMPSDTMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPT--------------PSPSNTTLEPNTPKSVAS 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 491 ASPTPKpTVTASPTPKPTvtASPTPKPTVTASPTPKPTvtaSPTPKPtvtaSPTPKPTATARPSVTPTVTPTASPTVRPT 570
Cdd:pfam17823 343 TNLAVV-TTTKAQAKEPS--ASPVPVLHTSMIPEVEAT---SPTTQP----SPLLPTQGAAGPGILLAPEQVATEATAGT 412

                         170       180
                  ....*....|....*....|
gi 1071373367 571 ATAGVTPSPTAGTITRALAS 590
Cdd:pfam17823 413 ASAGPTPRSSGDPKTLAMAS 432
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 413-602 4.97e-09

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 60.17  E-value: 4.97e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 413 TLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 492
Cdd:pfam03154 185 SPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRLPSPHPPLQPMTQPPPPSQVSPQ 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 493 PTPKPTVTAS--PTPKPTVTASPTPKPTVTASPTPKPTVTAS----PTPKPTVTA-----SPTPKPTATARPSVTP---- 557
Cdd:pfam03154 265 PLPQPSLHGQmpPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQsqvpPGPSPAAPGqsqqrIHTPPSQSQLQSQQPPreqp 344

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1071373367 558 -TVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMPNGL 602
Cdd:pfam03154 345 lPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSNL 390
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 411-596 5.61e-09

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 59.59  E-value: 5.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTA--SPTPKPTVTASPTPKPT 488
Cdd:pfam17823 107 ADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAphAASPAPRTAASSTTAAS 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 489 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTA-----SPTPKPTVTASPTPKPTATARPSVTPTVTPTA 563
Cdd:pfam17823 187 STTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAavgnsSPAAGTVTAAVGTVTPAALATLAAAAGTVASA 266

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1071373367 564 SPTVRPTATAGVTPSPTAGTITRALASGEAGPL 596
Cdd:pfam17823 267 AGTINMGDPHARRLSPAKHMPSDTMARNPAAPM 299
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 488-593 6.17e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 59.44  E-value: 6.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 488 TVTASPTPKPTVTASPTP---KPTVTASPTPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPTATARPSVtPTVTPTAS 564
Cdd:PRK14950  359 LLVPVPAPQPAKPTAAAPspvRPTPAPSTRPKAAAAANIPPKEPVRETATP-PPVPPRPVAPPVPHTPESA-PKLTRAAI 436

                          90       100       110
                  ....*....|....*....|....*....|
gi 1071373367 565 PT-VRPTATAgvtPSPTAGTITRALASGEA 593
Cdd:PRK14950  437 PVdEKPKYTP---PAPPKEEEKALIADGDV 463
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 432-581 6.63e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 59.61  E-value: 6.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 432 PGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPkPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTA 511
Cdd:PRK07764  596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAP-AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG 674

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 512 SPTPkptvtASPTPKPTVTASPTPKPTVTASPTPKPTATARP-----SVTPTVTPTASPTVRPTATAGVTPSPTA 581
Cdd:PRK07764  675 GAAP-----AAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAgqaddPAAQPPQAAQGASAPSPAADDPVPLPPE 744
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 441-558 7.45e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 59.34  E-value: 7.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 441 PSLVPTKTPAPSSTPKPTATASPTPKP-----TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP 515
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPvaqaaAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1071373367 516 KPTVTASPTPKPTVTASPT--PKPTVTASPTPKPTATARPSVTPT 558
Cdd:PRK14951  447 LAPAPPAQAAPETVAIPVRvaPEPAVASAAPAPAAAPAAARLTPT 491
PRK11633 PRK11633
cell division protein DedD; Provisional
 421-516 1.41e-08

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 56.16  E-value: 1.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 421 PSLTPtPFPTMPGE-------PGVSPVPSLVPTKTPAPSSTPKptatasPTPKPTVTASPTPKPTVTASPTPKPTVTASP 493
Cdd:PRK11633   57 PAATQ-ALPTQPPEgaaeavrAGDAAAPSLDPATVAPPNTPVE------PEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

                          90       100
                  ....*....|....*....|...
gi 1071373367 494 TPKptvtasPTPKPTVTASPTPK 516
Cdd:PRK11633  130 APK------PEPKPVVEEKAAPT 146
TALPID3 pfam15324
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for ...
 413-607 1.75e-08

Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.


Pssm-ID: 434634 [Multi-domain]  Cd Length: 1288  Bit Score: 58.75  E-value: 1.75e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  413 TLTPT-IPTPSLTPTPFPTMPG----------------------------EPGVSPVPSLVPTKTPAPSSTPKPTATASP 463
Cdd:pfam15324  982 TLLPTpVPTPQPTPPCSPPSPLkepspvktpdsspcvsehdffpvkeippEKGADTGPAVSLVITPTVTPIATPPPAATP 1061

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  464 TPkptvtasPTPKPTVTASPTPKPtvtasPTPKPTVTAS--------------PTPKPTVTASPT---PKPTVTASPTPK 526
Cdd:pfam15324 1062 TP-------PLSENSIDKLKSPSP-----ELPKPWEDSDlpleeenpnseqeeLHPRAVVMSVARdeePESVVLPASPPE 1129

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  527 PTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTV-RPTATAGVTPSPTAGTITRALASGEagpLAMPNgLALS 605
Cdd:pfam15324 1130 PKPLAPPPLGAAPPSPPQSPSSSSSTLESSSSLTVTETETAdRPISEGEILFSYGQMLAVRALEEGG---LFLPN-LNDS 1205


                   ..
gi 1071373367  606 LN 607
Cdd:pfam15324 1206 LS 1207
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 457-582 1.82e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 58.46  E-value: 1.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 457 PTATASPTPKPTVTASPTPKPTVTASPtPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTV-TASPTP 535
Cdd:PRK07764  386 GVAGGAGAPAAAAPSAAAAAPAAAPAP-AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPpAAAPSA 464

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1071373367 536 KPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAG 582
Cdd:PRK07764  465 QPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
PRK10905 PRK10905
cell division protein DamX; Validated
 450-574 1.94e-08

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 57.26  E-value: 1.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 450 APSSTPKPTATASPtpkptVTASPTPKPTVTASPTPKPTvTASPTPKPTVTASPtpKPTVTASPTPKPTVTASPTPKPTV 529
Cdd:PRK10905  119 VNSTLPTEPATVAP-----VRNGNASRQTAKTQTAERPA-TTRPARKQAVIEPK--KPQATAKTEPKPVAQTPKRTEPAA 190

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1071373367 530 TASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAG 574
Cdd:PRK10905  191 PVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAG 235
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 436-589 2.20e-08

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 56.41  E-value: 2.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 436 GVSPVPSLVPTKTPAPSsTPKPtATASPTPKPTVTASPTPKPTVTASPTPKPTVTasptPKPTVTASPTPKPTVTASPTP 515
Cdd:PHA02682   78 GQSPLAPSPACAAPAPA-CPAC-APAAPAPAVTCPAPAPACPPATAPTCPPPAVC----PAPARPAPACPPSTRQCPPAP 151

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367 516 kptvtASPTPKPtvtaSPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGV--TPSPTAGTITRALA 589
Cdd:PHA02682  152 -----PLPTPKP----APAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEPRIPDKIidADNDDKDLIKKELA 218
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 419-601 2.20e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 58.26  E-value: 2.20e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  419 PTPSLTPTPFPTMPGEPGVSPvpslVPTKTPAPSSTPKPTATASPTP-KPTVTASPTPKPTVTASPTPKPTVTASPTPKP 497
Cdd:PHA03307   258 PRPAPITLPTRIWEASGWNGP----SSRPGPASSSSSPRERSPSPSPsSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  498 TV--TASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT-ATARPSVTPTVTPTASPTVRPTATAG 574
Cdd:PHA03307   334 ESsrGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTrRRARAAVAGRARRRDATGRFPAGRPR 413

                          170       180
                   ....*....|....*....|....*..
gi 1071373367  575 VTPSPTAGTITRALASgeaGPLAMPNG 601
Cdd:PHA03307   414 PSPLDAGAASGAFYAR---YPLLTPSG 437
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 415-595 2.24e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 58.26  E-value: 2.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 494
Cdd:PHA03307    87 TPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDA 166

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  495 PKPTVTASPTPKP--TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTA---SPTPKPTATARPSVTPTVTPTASPTVRP 569
Cdd:PHA03307   167 ASSRQAALPLSSPeeTARAPSSPPAEPPPSTPPAAASPRPPRRSSPISAsasSPAPAPGRSAADDAGASSSDSSSSESSG 246

                          170       180
                   ....*....|....*....|....*...
gi 1071373367  570 TATAG--VTPSPTAGTITRALASGEAGP 595
Cdd:PHA03307   247 CGWGPenECPLPRPAPITLPTRIWEASG 274
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 451-580 2.70e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 57.42  E-value: 2.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 451 PSSTPKPTATASPTPKPTVTASPTPKPtvtasPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVT 530
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAP-----VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1071373367 531 ASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPT 580
Cdd:PRK14951  442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 445-597 2.81e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 57.69  E-value: 2.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 445 PTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTAS-PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 523
Cdd:PRK07764  597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAaPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 524 TPkptvtASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAgvtPSPTAGTITRALASGEAGPLA 597
Cdd:PRK07764  677 AP-----AAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP---PQAAQGASAPSPAADDPVPLP 742
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 450-589 3.26e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 57.42  E-value: 3.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 450 APSSTPKPTATASPTPKPTVTASPTPKP-TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP--- 525
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAaAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVAlap 449

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 526 -KPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALA 589
Cdd:PRK14951  450 aPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEAITALA 514
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 416-605 3.64e-08

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 57.24  E-value: 3.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTPTPFPTMPGEPGVSPVPS-----------------------LVPTKTPAPSST------PKPTATASPTPK 466
Cdd:PLN03209  330 PKESDAADGPKPVPTKPVTPEAPSPPIeeeppqpkavvprplspytayedLKPPTSPIPTPPssspasSKSVDAVAKPAE 409

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 467 PTVTASPTPKPTVTAS-PTPKPTVTASP-TP-------KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP 537
Cdd:PLN03209  410 PDVVPSPGSASNVPEVePAQVEAKKTRPlSPyaryedlKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAP 489

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 538 TvTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMPNGLALS 605
Cdd:PLN03209  490 P-PANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLS 556
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 415-539 4.09e-08

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 55.64  E-value: 4.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSlTPTPFPTMPGEPGVSPVPSlVPTKTPAPSSTPKPTATASPTPKPTVTASPTPK-PTVTASPTPKPTVtasP 493
Cdd:PHA02682   80 SPLAPSPA-CAAPAPACPACAPAAPAPA-VTCPAPAPACPPATAPTCPPPAVCPAPARPAPAcPPSTRQCPPAPPL---P 154

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1071373367 494 TPKPtvtaSPTPKPTVTASPTPKPTVTAS--PTPKPTVTASPTPKPTV 539
Cdd:PHA02682  155 TPKP----APAAKPIFLHNQLPPPDYPAAscPTIETAPAASPVLEPRI 198
PRK13914 PRK13914
invasion associated endopeptidase;
445-679 4.15e-08

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 56.73  E-value: 4.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 445 PTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASpTPKPTVTASPT 524
Cdd:PRK13914  246 TANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAPSTNTN-ANKTNTNTNTN 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 525 PKPTVTASPTPKptvtaspTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAM------ 598
Cdd:PRK13914  325 TNNTNTSTPSKN-------TNTNTNSNTNTNSNTNANQGSSNNNSNSSASAIIAEAQKHLGKAYSWGGNGPTTFdcsgyt 397

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 599 -----PNGLALslnPGDGGGKDLGGAQSSQAQLRP-NVLLVDFTSkfGIKHLQryllsqdsweIYVGS--FISAQQDGLf 670
Cdd:PRK13914  398 kyvfaKAGISL---PRTSGAQYASTTRISESQAKPgDLVFFDYGS--GISHVG----------IYVGNgqMINAQDNGV- 461


                  ....*....
gi 1071373367 671 LYDRLNGQG 679
Cdd:PRK13914  462 KYDNIHGSG 470
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 416-600 4.35e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 57.49  E-value: 4.35e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  416 PTIPTPSLTPTPFPTM-PGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKP---TVTASPTPKPTVTASPTPKPTVTA 491
Cdd:PHA03307   106 PTPPGPSSPDPPPPTPpPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASpaaVASDAASSRQAALPLSSPEETARA 185

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  492 SPTPKPTV-TASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP----------TATARPSVTPtvt 560
Cdd:PHA03307   186 PSSPPAEPpPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSessgcgwgpeNECPLPRPAP--- 262

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1071373367  561 pTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMPN 600
Cdd:PHA03307   263 -ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPS 301
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 389-537 4.96e-08

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 56.64  E-value: 4.96e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 389 GWEIYTGRFNGQTtglLLYNRFANT-----LT-----PTIPTPS----LTPTPFPTMPGEP-----GVSPVPSLVPTKTP 449
Cdd:PLN02217  491 GWQPWLGDFGLNT---LFYSEVQNTgpgaaITkrvtwPGIKKLSdeeiLKFTPAQYIQGDAwipgkGVPYIPGLFAGNPG 567

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 450 APSSTPkptaTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPTV 529
Cdd:PLN02217  568 STNSTP----TGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSP-STTPSSPESSIKV 642


                  ....*...
gi 1071373367 530 TASPTPKP 537
Cdd:PLN02217  643 ASTETASP 650
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 425-573 5.03e-08

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 55.25  E-value: 5.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 425 PTPFPTMPGEPGVSPVPSLVpTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVtASPTPKPTVTASPTPKPTVTA-SP 503
Cdd:PHA02682   35 PAPAAPCPPDADVDPLDKYS-VKEAGRYYQSRLKANSACMQRPSGQSPLAPSPAC-AAPAPACPACAPAAPAPAVTCpAP 112

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 504 TPK-PTVTASPTPKPTVTASPT-PKPTVTASPTPKPTVTASPTPKPTATARP-----SVTPTVTPTAS-PTVRPTATA 573
Cdd:PHA02682  113 APAcPPATAPTCPPPAVCPAPArPAPACPPSTRQCPPAPPLPTPKPAPAAKPiflhnQLPPPDYPAAScPTIETAPAA 190
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 421-595 5.84e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 56.53  E-value: 5.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 421 PSLTPTPFPTMPGEPGVSPVPSLVPTKT--PAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 498
Cdd:PRK07764  597 GEGPPAPASSGPPEEAARPAAPAAPAAPaaPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 499 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPS-VTPTVTPTASPTVRPTATAGVTP 577
Cdd:PRK07764  677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSpAADDPVPLPPEPDDPPDPAGAPA 756

                         170
                  ....*....|....*...
gi 1071373367 578 SPTAGTITRALASGEAGP 595
Cdd:PRK07764  757 QPPPPPAPAPAAAPAAAP 774
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 429-559 5.89e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 56.53  E-value: 5.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 429 PTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPtpkPTVTASPTPKPTVTASPTPKPTvTASPTPKPTVTASPTPKPT 508
Cdd:PRK07764  386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAA---AAPAPAAAPQPAPAPAPAPAPP-SPAGNAPAGGAPSPPPAAA 461

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 509 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTV 559
Cdd:PRK07764  462 PSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 415-586 6.98e-08

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 56.12  E-value: 6.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSL----TPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATA--SPTPKPTVTASPTPKPTVTASPTPKPT 488
Cdd:pfam17823 117 AAASSSPSSaaqsLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAphAASPAPRTAASSTTAASSTTAASSAPT 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 489 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTA-----SPTPKPTVTASPTPKP----TVTASPTPKPTATARPSVTPTV 559
Cdd:pfam17823 197 TAASSAPATLTPARGISTAATATGHPAAGTALAavgnsSPAAGTVTAAVGTVTPaalaTLAAAAGTVASAAGTINMGDPH 276

                         170       180
                  ....*....|....*....|....*...
gi 1071373367 560 TPTASPTVR-PTATAGVTPSPTAGTITR 586
Cdd:pfam17823 277 ARRLSPAKHmPSDTMARNPAAPMGAQAQ 304
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 416-588 7.01e-08

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 56.70  E-value: 7.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTP--TPFPTMPgepgVSPVPSLVPTKTPAPSSTPKPTATASPTPKPtvtasPTPKPTVTASPTPKPtvTASP 493
Cdd:pfam03154 344 PLPPAPLSMPhiKPPPTTP----IPQLPNPQSHKHPPHLSGPSPFQMNSNLPPP-----PALKPLSSLSTHHPP--SAHP 412

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 494 TP------KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP-TPKPTVTASPTPKPTATArPSVTPTVTPTASPT 566
Cdd:pfam03154 413 PPlqlmpqSQQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSqSPFPQHPFVPGGPPPITP-PSGPPTSTSSAMPG 491

                         170       180
                  ....*....|....*....|...
gi 1071373367 567 VRPTATAGVTPS-PTAGTITRAL 588
Cdd:pfam03154 492 IQPPSSASVSSSgPVPAAVSCPL 514
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 441-597 7.11e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 56.41  E-value: 7.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 441 PSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVT 520
Cdd:PRK07994  361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 521 ASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPtagtITRALASGEAGPLA 597
Cdd:PRK07994  441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA----LKKALEHEKTPELA 513
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 437-591 7.42e-08

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 56.12  E-value: 7.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 437 VSPVPSLVPTKTPApSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPK-PTVTASPTPKPTVTASPT--PKPTVTASP 513
Cdd:pfam17823  65 AAPAPVTLTKGTSA-AHLNSTEVTAEHTPHGTDLSEPATREGAADGAASRaLAAAASSSPSSAAQSLPAaiAALPSEAFS 143

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 514 TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVrPTATAGVTPSPTAGTITRALASG 591
Cdd:pfam17823 144 APRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTT-AASSAPATLTPARGISTAATATG 220
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
411-555 7.43e-08

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 55.82  E-value: 7.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMpgepGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVT--ASPTPKPT 488
Cdd:pfam05539 182 TEVSHPTYPSQVTPQSQPATQ----GHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPqhPPSTTSQD 257

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 489 VTASPTPKPTvTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSV 555
Cdd:pfam05539 258 QSTTGDGQEH-TQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGV 323
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 476-572 7.45e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.44  E-value: 7.45e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  476 KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATArpsV 555
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA---V 113

                           90       100
                   ....*....|....*....|....*....
gi 1071373367  556 TPTVTP------------TASPTVrPTAT 572
Cdd:PRK12270   114 EDEVTPlrgaaaavaknmDASLEV-PTAT 141
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 449-550 8.91e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.44  E-value: 8.91e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  449 PAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 528
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117

                           90       100
                   ....*....|....*....|....*
gi 1071373367  529 VTASPTPKPTVT---ASPTpKPTAT 550
Cdd:PRK12270   118 TPLRGAAAAVAKnmdASLE-VPTAT 141
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 410-583 9.68e-08

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 55.99  E-value: 9.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 410 FANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTP--KPTVTASPTP---KPTVTASPT 484
Cdd:pfam08580 464 SERVINSKLRRESKLPQIASTLKQTKRPSKIPRASPNHSGFLSTPSNTATSETPTPalRPPSRPQPPPpgnRPRWNASTN 543

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 485 P---------KPTVTASPTPKPTVTAS-----PTPKP---TVTASPTPKPT----VTASPT-PKPTVTASPTPKP-TVTA 541
Cdd:pfam08580 544 TndldvghnfKPLTLTTPSPTPSRSSRssstlPPVSPlsrDKSRSPAPTCRsvsrASRRRAsRKPTRIGSPNSRTsLLDE 623

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1071373367 542 SPTPKPTATARPSVTPTVTPT---ASPTVRPTATAGVTPSPTAGT 583
Cdd:pfam08580 624 PPYPKLTLSKGLPRTPRNRQSyagTSPSRSVSVSSGLGPQTRPGT 668
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 425-555 1.03e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 55.76  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 425 PTPFPTMPGEPGVSPVPSLVPTKTPAPsstPKPTATASPTPKPTVTASPTPKPTVTASPTP---KPTVTASPTPKPTVTA 501
Cdd:PRK07764  386 GVAGGAGAPAAAAPSAAAAAPAAAPAP---AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSpagNAPAGGAPSPPPAAAP 462

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 502 SPTPKPTVTASPTPkptvTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSV 555
Cdd:PRK07764  463 SAQPAPAPAAAPEP----TAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 415-583 1.13e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 55.95  E-value: 1.13e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASP---TPKPTVTASPTPKPTVTASPTPKPTvtA 491
Cdd:PHA03307    27 TPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPgteAPANESRSTPTWSLSTLAPASPARE--G 104

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  492 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPK---PTVTASPTPKPTATARPS----VTPTVTPTAS 564
Cdd:PHA03307   105 SPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAaspPAAGASPAAVASDAASSRqaalPLSSPEETAR 184

                          170
                   ....*....|....*....
gi 1071373367  565 PTVRPTATAGVTPSPTAGT 583
Cdd:PHA03307   185 APSSPPAEPPPSTPPAAAS 203
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 416-528 1.48e-07

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 51.21  E-value: 1.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTPTPFPTMPG--EPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTP-KPTVTASPTPK-PTVTA 491
Cdd:pfam02389  19 PTTKEPCHSKVPEPCNPKvpEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPcSPKVPEPCHPKaPEPCH 98

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1071373367 492 SPTPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPT 528
Cdd:pfam02389  99 PKVPEPCYPKAPEPCQPKVPEPCP-STVTPGPAQQKT 134
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
418-588 1.55e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 55.24  E-value: 1.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 418 IPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPtpkPTVTASPTPKPTVTASPTPKPTVTASPTPKP 497
Cdd:PRK07003  380 VPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA---PPAAPAPPATADRGDDAADGDAPVPAKANAR 456

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 498 TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVT------PTVTPTASPTVRPTA 571
Cdd:PRK07003  457 ASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAasredaPAAAAPPAPEARPPT 536

                         170
                  ....*....|....*..
gi 1071373367 572 TAGVTPSPTAGTITRAL 588
Cdd:PRK07003  537 PAAAAPAARAGGAAAAL 553
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
445-579 1.59e-07

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 54.67  E-value: 1.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 445 PTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASP---TPKPTVTASPTPKPTVTASPTPKPTVT- 520
Cdd:pfam05539 169 KTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEpvgTQGTTTSSNPEPQTEPPPSQRGPSGSPq 248

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 521 ---ASPTPKPTVTA-----SPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSP 579
Cdd:pfam05539 249 hppSTTSQDQSTTGdgqehTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSP 315
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 466-546 1.88e-07

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 54.30  E-value: 1.88e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 466 KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVtasPTPKPTVTASPTPKPTVTASPTP 545
Cdd:PTZ00144  113 APLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAA---KPPEPAPAAKPPPTPVARADPRE 189


                  .
gi 1071373367 546 K 546
Cdd:PTZ00144  190 T 190
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 419-599 1.93e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 54.99  E-value: 1.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 419 PTPSLTPTPFPTMPGEPGVSPVPSLVPT-KTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPT-VTASPTPK 496
Cdd:PRK07764  605 SSGPPEEAARPAAPAAPAAPAAPAPAGAaAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGaAPAAPPPA 684

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 497 PTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVT 576
Cdd:PRK07764  685 PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP 764

                         170       180
                  ....*....|....*....|...
gi 1071373367 577 PSPTAGTITRALASGEAGPLAMP 599
Cdd:PRK07764  765 APAAAPAAAPPPSPPSEEEEMAE 787
PRK11633 PRK11633
cell division protein DedD; Provisional
 475-575 1.95e-07

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 52.70  E-value: 1.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 475 PKPTVTASPTPKPTVTAS-PTPKP-----TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 548
Cdd:PRK11633   45 PKPGDRDEPDMMPAATQAlPTQPPegaaeAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQK 124

                          90       100
                  ....*....|....*....|....*..
gi 1071373367 549 ATARPSVTPTVTPTASPTVRPTATAGV 575
Cdd:PRK11633  125 VEAPPAPKPEPKPVVEEKAAPTGKAYV 151
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 401-601 2.28e-07

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 54.58  E-value: 2.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 401 TTGLLLYNRFANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTA--------- 471
Cdd:pfam17823 188 TTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAaagtvasaa 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 472 ------SPTPKPTVTASPTPKPTVTASPTP------KPTVTASPTPKPTVTASPTPKP----TVTASPTPKPTVTASPTP 535
Cdd:pfam17823 268 gtinmgDPHARRLSPAKHMPSDTMARNPAApmgaqaQGPIIQVSTDQPVHNTAGEPTPspsnTTLEPNTPKSVASTNLAV 347

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 536 KPTV-------TASPTPKPTATARPSV---TPTVTPTASPTVRPTATAGvTPSPTAGTITRALA-SGEAGPLAMPNG 601
Cdd:pfam17823 348 VTTTkaqakepSASPVPVLHTSMIPEVeatSPTTQPSPLLPTQGAAGPG-ILLAPEQVATEATAgTASAGPTPRSSG 423
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 456-536 2.50e-07

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 53.92  E-value: 2.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 456 KPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVtasPTPKPTVTASPTPKPTVTASPTP 535
Cdd:PTZ00144  113 APLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAA---KPPEPAPAAKPPPTPVARADPRE 189


                  .
gi 1071373367 536 K 536
Cdd:PTZ00144  190 T 190
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 442-527 2.55e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.90  E-value: 2.55e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  442 SLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtVTASPTPKPTVTA 521
Cdd:PRK12270    35 DYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP-AAAAAAAPAAAAV 113


                   ....*.
gi 1071373367  522 SPTPKP 527
Cdd:PRK12270   114 EDEVTP 119
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 448-575 2.85e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 54.61  E-value: 2.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 448 TPAPSSTPKPTATASPTPKPTVTASPtPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtvtASPTPKPTVTASPTPKP 527
Cdd:PRK07764  387 VAGGAGAPAAAAPSAAAAAPAAAPAP-AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA---GNAPAGGAPSPPPAAAP 462

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1071373367 528 TVTASPTPKPTV--TASPTPKPTATARPSVTPTVTPTASPTVRPTATAGV 575
Cdd:PRK07764  463 SAQPAPAPAAAPepTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
416-570 2.87e-07

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 53.90  E-value: 2.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTpTPFPTMPGEPgvsPVPSLVPTKT-PAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 494
Cdd:pfam05539 169 KTAVTTSKT-TSWPTEVSHP---TYPSQVTPQSqPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPS 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 495 PKPTVTAS-PTPKPTVTA-----SPTPK-PTVTASP-TPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPT 566
Cdd:pfam05539 245 GSPQHPPStTSQDQSTTGdgqehTQRRKtPPATSNRrSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQ 324


                  ....
gi 1071373367 567 VRPT 570
Cdd:pfam05539 325 ANPT 328
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 414-539 2.98e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 54.22  E-value: 2.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 414 LTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKT---PAPSSTPKPTATASPTPKPTvTASPTPKPTVTASPTPKPTVT 490
Cdd:PRK07764  385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAaaaPAPAAAPQPAPAPAPAPAPP-SPAGNAPAGGAPSPPPAAAPS 463

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1071373367 491 ASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTV 539
Cdd:PRK07764  464 AQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
422-506 4.15e-07

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 52.71  E-value: 4.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 422 SLTPTPFPTMPGEPGVSPVPSlvPTKTPAPSSTPKPTATASPTPKPTVTASPTPKptvTASPTPKPTVTASPTPKPTVTA 501
Cdd:PRK13042   14 GLLTTGVITTTTQAANATTPS--STKVEAPQSTPPSTKVEAPQSKPNATTPPSTK---VEAPQQTPNATTPSSTKVETPQ 88


                  ....*
gi 1071373367 502 SPTPK 506
Cdd:PRK13042   89 SPTTK 93
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 405-538 4.16e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 53.56  E-value: 4.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 405 LLYNRFANTLTPTIPTPSLTPTPfptmPGEPGVSPVPSLVPTKTPAPSSTPkPTATASPTPKPTVTASPTPKPTVTASPT 484
Cdd:PRK14951  361 LLAFKPAAAAEAAAPAEKKTPAR----PEAAAPAAAPVAQAAAAPAPAAAP-AAAASAPAAPPAAAPPAPVAAPAAAAPA 435

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367 485 PKPTVTASPTPKPTVTASPTPKPTVTASPT--PKPTVTASPTPKPTVTASPTPKPT 538
Cdd:PRK14951  436 AAPAAAPAAVALAPAPPAQAAPETVAIPVRvaPEPAVASAAPAPAAAPAAARLTPT 491
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 434-550 4.19e-07

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 53.25  E-value: 4.19e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 434 EPGVSPVPSLVPTKTPAPSSTPKPTATA-SPTPKPTVTASPTP-----KPTVTASPTPKPTVTASPTPKPTVTASPTPKP 507
Cdd:pfam13254 220 SPSVSGISADSSPTKEEPSEEADTLSTDkEQSPAPTSASEPPPktkelPKDSEEPAAPSKSAEASTEKKEPDTESSPETS 299

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1071373367 508 TVTASPTPkptvtASPTPKPTVTASPTPKPTVTASPTPKPTAT 550
Cdd:pfam13254 300 SEKSAPSL-----LSPVSKASIDKPLSSPDRDPLSPKPKPQSP 337
PRK08581 PRK08581
amidase domain-containing protein;
80-167 4.32e-07

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 53.64  E-value: 4.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  80 PFALCPG--PFPRGgNCVWWAWEQWHWLHYDLPLNWGNAADWISAAQRAGLAVGTQPRVGAIAVFPVadGVW-AYSSAGH 156
Cdd:PRK08581  498 PFREYSGssPYPHG-QCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQARGYQVSHTPKRHAAVVFEA--GQAgADQHYGH 574

                          90
                  ....*....|.
gi 1071373367 157 VAFVTWVSPDG 167
Cdd:PRK08581  575 VAFVEKVNSDG 585
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 413-524 4.40e-07

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 54.00  E-value: 4.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 413 TLTPTIPTPSLTPTPFPTMPGEPGVSPVP--SLVPTKTPA---PSSTPKPTATASPTPKPTVTASPT---PKPTVTASPT 484
Cdd:pfam03154 435 TQSQSLPPPAASHPPTSGLHQVPSQSPFPqhPFVPGGPPPitpPSGPPTSTSSAMPGIQPPSSASVSssgPVPAAVSCPL 514

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1071373367 485 PKPTVTASPTPKPTVTASPTPKPTvtaSPTPKPTVTASPT 524
Cdd:pfam03154 515 PPVQIKEEALDEAEEPESPPPPPR---SPSPEPTVVNTPS 551
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 444-544 4.82e-07

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 49.73  E-value: 4.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 444 VPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTasPTPKPTVTASPTPKPtvtaSPTPKPtvtASPTPKPTVTASP 523
Cdd:pfam05104  50 LPESEQADESEEEPREFKTPDEAPSAALEPEPVPTPV--PAPVEPEPAPPSESP----APSPKE---KKKKEKKSAKVEP 120

                          90       100
                  ....*....|....*....|.
gi 1071373367 524 TPKPtVTASPTPKPTVTASPT 544
Cdd:pfam05104 121 AETP-EAVQPKPALEKEEPPA 140
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 416-608 5.58e-07

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 53.62  E-value: 5.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPsLTPTPFPtMPGEPGVSPVPSLVPTKTPAPSS---TPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 492
Cdd:pfam03154 287 SHMQHP-VPPQPFP-LTPQSSQSQVPPGPSPAAPGQSQqriHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIP 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 493 PTPKPTVTASPT----PKPTVTASPTPKP-----------------------------TVTASPTPKPTVTASPTPKPTV 539
Cdd:pfam03154 365 QLPNPQSHKHPPhlsgPSPFQMNSNLPPPpalkplsslsthhppsahppplqlmpqsqQLPPPPAQPPVLTQSQSLPPPA 444

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 540 TASPTPK---PTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMPNGLALSLNP 608
Cdd:pfam03154 445 ASHPPTSglhQVPSQSPFPQHPFVPGGPPPITPPSGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLPP 516
PHA03247 PHA03247
large tegument protein UL36; Provisional
 419-624 5.80e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 5.80e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  419 PTPS-LTPTPFPTMP-GEP-------------------GVSPVPSLVPTKTPAPSSTPKPTATASPTP-KPTVTASPTpK 476
Cdd:PHA03247  2510 PAPSrLAPAILPDEPvGEPvhprmltwirgleelasddAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPsEPAVTSRAR-R 2588

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  477 PTVTASPT-PKPTVTASPTPKPTVTASPTPkPTVTASPTPKPTVTASPTPKPTVTASPTP-------------------- 535
Cdd:PHA03247  2589 PDAPPQSArPRAPVDDRGDPRGPAPPSPLP-PDTHAPDPPPPSPSPAANEPDPHPPPTVPpperprddpapgrvsrprra 2667

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  536 ----KPTVTASPTPKPTataRPSVTPTVTPTAS----------PTVRPTATAGVTPSPTAGTITRALASG---EAGPLAM 598
Cdd:PHA03247  2668 rrlgRAAQASSPPQRPR---RRAARPTVGSLTSladpppppptPEPAPHALVSATPLPPGPAAARQASPAlpaAPAPPAV 2744

                          250       260
                   ....*....|....*....|....*.
gi 1071373367  599 PNGLALSLNPGDGGGKDLGGAQSSQA 624
Cdd:PHA03247  2745 PAGPATPGGPARPARPPTTAGPPAPA 2770
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 416-593 6.96e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 53.25  E-value: 6.96e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  416 PTIPTPS-LTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 494
Cdd:PHA03307    68 PTGPPPGpGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPP 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  495 PKPTVTASPTPKPTVTA-SPTPKPTVTASPTPKPTVTASPTPkptvtaSPTPKPTATARPSvtptvTPTASPTVRPTATA 573
Cdd:PHA03307   148 PAASPPAAGASPAAVASdAASSRQAALPLSSPEETARAPSSP------PAEPPPSTPPAAA-----SPRPPRRSSPISAS 216

                          170       180
                   ....*....|....*....|
gi 1071373367  574 GVTPSPTAGTITRALASGEA 593
Cdd:PHA03307   217 ASSPAPAPGRSAADDAGASS 236
HC2 pfam07382
Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like ...
 444-583 7.07e-07

Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like nucleoprotein HC2 (approximately 200 residues long), which seems to be found mostly in Chlamydia. HC2 functions in DNA condensation, although it has been suggested that it also has other roles.


Pssm-ID: 369339 [Multi-domain]  Cd Length: 187  Bit Score: 50.55  E-value: 7.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 444 VPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVtasptPKPTVTASPTPKPTVTASPTPKPTVTASP 523
Cdd:pfam07382   4 AQKKRSSKKTAAKKAAVRKPAAKKAAAKKTVVRKVAAKKPAARKTV-----AKKTVAAKKPAAKKAAKKAVAKKVVAKKP 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 524 TPKPTVTASPTPKPTVTASPTPKPT----ATARPSVTPTVTPTASPTVRPTATAGVtPSPTAGT 583
Cdd:pfam07382  79 VAKKAVAKKATAKKVAAKKVVAKKTvakkAAAKKPAAKKAVAKKAVARKPAAKKAV-AKKAAST 141
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
413-547 7.43e-07

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 52.36  E-value: 7.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 413 TLTPTIPTPSLTPTPFPTMPgepgvspvpslvPTKTPAPSSTPKPTATASPTPKPTvTASPTPKPTVTASPTPKPTVTAS 492
Cdd:pfam05539 224 TTTSSNPEPQTEPPPSQRGP------------SGSPQHPPSTTSQDQSTTGDGQEH-TQRRKTPPATSNRRSPHSTATPP 290

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 493 PTPKPTVTASPTPKPTVTASPTPKPTVTaSPtpkPTVTASPTPKPTV--TASPTPKP 547
Cdd:pfam05539 291 PTTKRQETGRPTPRPTATTQSGSSPPHS-SP---PGVQANPTTQNLVdcKELDPPKP 343
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 505-591 7.88e-07

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 52.20  E-value: 7.88e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 505 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKptvtasPTPKPTATARPSVTPTVTPTAsPTVRPTATAGVTPSPTAgti 584
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASG------MSAAPASAVEEKSPSEESATA-TAPESPSTSVPSSGSDA--- 146


                  ....*..
gi 1071373367 585 TRALASG 591
Cdd:TIGR00601 147 ASTLVVG 153
PHA03378 PHA03378
EBNA-3B; Provisional
 418-628 7.91e-07

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 53.15  E-value: 7.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 418 IPTPSLTPTPFptmpgEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKptvTASPTPKPTVTASPTPKP 497
Cdd:PHA03378  564 LPAPGLGPLQI-----QPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPE---TSAPRQWPMPLRPIPMRP 635

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 498 TVTASPTPKPTVTASPTPKPTVTASP-----TPKPTVTASPTPKPTVTASPTPKPTATARP---SVTPTVTPTASPTV-- 567
Cdd:PHA03378  636 LRMQPITFNVLVFPTPHQPPQVEITPykptwTQIGHIPYQPSPTGANTMLPIQWAPGTMQPpprAPTPMRPPAAPPGRaq 715

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 568 RPTATAGVTPSPTAGTITRALASGEAGPLAMPNGLALSLNPGDGGGKDLGGAQSSQAQLRP 628
Cdd:PHA03378  716 RPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTP 776
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 411-498 8.70e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.50  E-value: 8.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPS-LTPTPFPTMPGEPgvsPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPkPTVTASPTPKPTV 489
Cdd:PRK14950  366 PQPAKPTAAAPSpVRPTPAPSTRPKA---AAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESA-PKLTRAAIPVDEK 441


                  ....*....
gi 1071373367 490 TASPTPKPT 498
Cdd:PRK14950  442 PKYTPPAPP 450
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 481-569 9.19e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.97  E-value: 9.19e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  481 ASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtvtASPTPKPTATARPSVTPTVT 560
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA---AAAAAPAAPPAAAAAAAPAA 110


                   ....*....
gi 1071373367  561 PTASPTVRP 569
Cdd:PRK12270   111 AAVEDEVTP 119
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 453-530 9.47e-07

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 52.20  E-value: 9.47e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 453 STPKPTATASPTPKPTVTASPTPKPTVTASPTPKPtvtaSPTPKPTVT-ASPTPKPTVTASPTPKPTVTASPTPKPTVT 530
Cdd:TIGR00601  75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGM----SAAPASAVEeKSPSEESATATAPESPSTSVPSSGSDAAST 149
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
415-581 9.66e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.54  E-value: 9.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLTPT--PFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPK--PTVT 490
Cdd:PRK07003  416 AAAAATRAEAPPaaPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAfePAPR 495

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 491 ASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTV-----------------------------------TASPTP 535
Cdd:PRK07003  496 AAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPptpaaaapaaraggaaaaldvlrnagmrvssdrgaRAAAAA 575

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1071373367 536 KPTVTASPTPKPtATARPSVtPTVTPTASPTVRPTATAGVTPSPTA 581
Cdd:PRK07003  576 KPAAAPAAAPKP-AAPRVAV-QVPTPRARAATGDAPPNGAARAEQA 619
DUF3246 pfam11596
Protein of unknown function (DUF3246); This is a small family of fungal proteins one of whose ...
 413-583 9.75e-07

Protein of unknown function (DUF3246); This is a small family of fungal proteins one of whose members, Swiss:A3LUS4 from Pichia stipitis is described as being an extremely serine rich protein-mucin-like protein.


Pssm-ID: 371619 [Multi-domain]  Cd Length: 241  Bit Score: 50.85  E-value: 9.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 413 TLTPTIPTPSLTPTPFPTMPGEPGVSPVPSlvptKTPAPSSTPKPTATASPT---PKPTVTASPTPKPTVtasptPKPTV 489
Cdd:pfam11596  13 TDIPTTTTATTTPTGSGTITLISTGNSSVS----TKAGSSITVAGTSSTGSDnddDDDDETDCETEIPTV-----PTGTT 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 490 TASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTasPTVRP 569
Cdd:pfam11596  84 TIDPTGNGTITGIPTASDTDDETDCETETDTVEPSIGTATTGVTTTTVISDGVTTTQTVTTVAPVPTQTHTET--ETVTI 161

                         170
                  ....*....|....
gi 1071373367 570 TATAGVTPSPTAGT 583
Cdd:pfam11596 162 TYTGAGQTFTTYLT 175
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 416-538 1.05e-06

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 48.90  E-value: 1.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASP----TPKPTVTA 491
Cdd:pfam02389  13 PQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPcspkVPEPCHPK 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1071373367 492 SPTPkptvTASPTPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPT 538
Cdd:pfam02389  93 APEP----CHPKVPEPCYPKAPEPCQPKVPEPCP-STVTPGPAQQKT 134
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 438-548 1.06e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.41  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 438 SPVPSLVPTKTPAPSSTPkPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP 517
Cdd:PRK14951  380 TPARPEAAAPAAAPVAQA-AAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPE 458

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1071373367 518 TVTASPT--PKPTVTASPTPKPTVTASPTPKPT 548
Cdd:PRK14951  459 TVAIPVRvaPEPAVASAAPAPAAAPAAARLTPT 491
PRK10856 PRK10856
cytoskeleton protein RodZ;
509-604 1.07e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 51.57  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 509 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTvrpTATAGVTPSPTAGTITRAL 588
Cdd:PRK10856  164 LDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAA---TPAPAAPATPDGAAPLPTD 240

                          90
                  ....*....|....*.
gi 1071373367 589 ASGEAGPLAMPNGLAL 604
Cdd:PRK10856  241 QAGVSTPAADPNALVM 256
PHA03292 PHA03292
envelope glycoprotein I; Provisional
 455-580 1.21e-06

envelope glycoprotein I; Provisional


Pssm-ID: 177577  Cd Length: 413  Bit Score: 51.88  E-value: 1.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 455 PKPTaTASPTPKPTVTASPTPKPTVTASPTPKPTVTASptpKPTVTASPTPKPTV----TASPTPKPTVTASPTPKPTVT 530
Cdd:PHA03292  175 PEPT-TARPEPAAGYVATPTPRYLNAVTTSTYSRSMSS---QPAGAATATPTPTLdtglTTVAPPNETVVTGETALLCHW 250

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 531 ASP-TPKPTV-------TASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPT 580
Cdd:PHA03292  251 FQPsTRVPTLylhllgtTGNLTEDVLLTEDSEILRTPPPDPSSSRSPGAGDDFKQTNS 308
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 438-515 1.28e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.59  E-value: 1.28e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367  438 SPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP 515
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVE 114
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 407-565 1.30e-06

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 52.24  E-value: 1.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 407 YNRFANTLTPTIPTP--------SLTPTPFPTMPGEPGVSPVP---SLVPTKTPAPSSTP--------------KPTATA 461
Cdd:PLN03209  374 YTAYEDLKPPTSPIPtppssspaSSKSVDAVAKPAEPDVVPSPgsaSNVPEVEPAQVEAKktrplspyaryedlKPPTSP 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 462 SPTPKPTVTASPTPKPTVTASP-TPKPTVTASPTPKPTVTASP-TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTV 539
Cdd:PLN03209  454 SPTAPTGVSPSVSSTSSVPAVPdTAPATAATDAAAPPPANMRPlSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVG 533

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1071373367 540 -------------TASPTPKPTA--TARPSVTPTVTPTASP 565
Cdd:PLN03209  534 nsapptaladeqhHAQPKPRPLSpyTMYEDLKPPTSPTPSP 574
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 434-578 1.33e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 51.31  E-value: 1.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 434 EPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtvtasPTPKPTVTASP 513
Cdd:NF040712  196 LRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEP-----VGPGAAPAAEP 270

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 514 TPKpTVTASPTPKPTVTASPTPKPTVTASPTPkPTATARPSVTPTVTPTASPTVRPTATAG--VTPS 578
Cdd:NF040712  271 DEA-TRDAGEPPAPGAAETPEAAEPPAPAPAA-PAAPAAPEAEEPARPEPPPAPKPKRRRRraSVPS 335
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 475-550 1.36e-06

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 51.43  E-value: 1.36e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 475 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtvtaSPTPKPTVT-ASPTPKPTVTASPTPKPTVTASPTPKPTAT 550
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGM----SAAPASAVEeKSPSEESATATAPESPSTSVPSSGSDAAST 149
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 456-540 1.37e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.20  E-value: 1.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  456 KPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtvtASPTP 535
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP---AAAAV 113


                   ....*
gi 1071373367  536 KPTVT 540
Cdd:PRK12270   114 EDEVT 118
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 449-596 1.41e-06

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 51.79  E-value: 1.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 449 PAPSSTPKPtATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPK-P 527
Cdd:cd23959   101 MAPDESLGP-FRAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQSSAsP 179

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 528 TVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTAtagvTPSPTAGTITRALASGEAGPL 596
Cdd:cd23959   180 GEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFA----APASAASFPAAPVANGEAATP 244
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 476-556 1.49e-06

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 51.61  E-value: 1.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 476 KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP---TVTASPTPKptvtasPTPKPTATAR 552
Cdd:PTZ00144  113 APLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAaakPPEPAPAAK------PPPTPVARAD 186


                  ....
gi 1071373367 553 PSVT 556
Cdd:PTZ00144  187 PRET 190
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 418-579 1.56e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 52.00  E-value: 1.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 418 IPTPSLTPTpFPTMPGEP--------GVSPVPSLVPTKTPAP-----SSTPK-------PTATASPTPkPTVTASPTpKP 477
Cdd:PTZ00449  572 IPTLSKKPE-FPKDPKHPkdpeepkkPKRPRSAQRPTRPKSPklpelLDIPKspkrpesPKSPKRPPP-PQRPSSPE-RP 648

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 478 TVTASP-TPKPTVTASPTPKPT---------VTASPTPKPTVTA------------SPTPKPTVTASPTPKPTVTASPTp 535
Cdd:PTZ00449  649 EGPKIIkSPKPPKSPKPPFDPKfkekfyddyLDAAAKSKETKTTvvldesfesilkETLPETPGTPFTTPRPLPPKLPR- 727

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1071373367 536 KPTVTASPTPKPTAtARPSVTPTVTPTASPTVRPTATAGVTPSP 579
Cdd:PTZ00449  728 DEEFPFEPIGDPDA-EQPDDIEFFTPPEEERTFFHETPADTPLP 770
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 456-595 1.64e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.91  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 456 KPTATASPTPKP-TVTASPTPKPTVTASPTPKPTVTASPT----PKPTVTAS-PTPKPTVTASPTPKPTVTASPTPKPTV 529
Cdd:PRK07764  583 QVEAVVGPAPGAaGGEGPPAPASSGPPEEAARPAAPAAPAapaaPAPAGAAAaPAEASAAPAPGVAAPEHHPKHVAVPDA 662

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 530 TASPTPKPTVTASPTPK---PTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGP 595
Cdd:PRK07764  663 SDGGDGWPAKAGGAAPAappPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731
PHA03255 PHA03255
BDLF3; Provisional
 452-599 1.68e-06

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 50.29  E-value: 1.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 452 SSTPkptATASPTPKPTVTASPTPKPTVTASPTPK-PTVTASPTPKPTVTASPTPKPTVTASPTpkpTVTASPTPKPTVT 530
Cdd:PHA03255   26 SSGS---STASAGNVTGTTAVTTPSPSASGPSTNQsTTLTTTSAPITTTAILSTNTTTVTSTGT---TVTPVPTTSNAST 99

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 531 ASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPT--ATAGVTPSPTAGTITRALASGEAGPLAMP 599
Cdd:PHA03255  100 INVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSATtrITNATTLAPTLSSKGTSNATKTTAELPTV 170
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
411-599 1.74e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.77  E-value: 1.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTktPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVT 490
Cdd:PRK07003  396 VPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPA--PPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD 473

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 491 ASPTPKPTVTASPTPK--PTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT----ATARPSVTPTVTPTAS 564
Cdd:PRK07003  474 SGSASAPASDAPPDAAfePAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARpptpAAAAPAARAGGAAAAL 553

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1071373367 565 PTVRptaTAGVTPSPTAGTITRALASGEAGPLAMP 599
Cdd:PRK07003  554 DVLR---NAGMRVSSDRGARAAAAAKPAAAPAAAP 585
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 454-526 1.76e-06

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 51.22  E-value: 1.76e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1071373367 454 TPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVtasPTPKPTVTASPTPKPTVTASPTPK 526
Cdd:PTZ00144  121 GGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAA---KPPEPAPAAKPPPTPVARADPRET 190
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 360-629 1.80e-06

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 52.08  E-value: 1.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 360 SRSSGKIQILSLGPDLQISQHITLAGWGPGWEIYTGrfngqttglllynrfANTLTPTIPTPSLTPTPFP--TMPGEPGV 437
Cdd:pfam03154 158 SDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQ---------------AATAGPTPSAPSVPPQGSPatSQPPNQTQ 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 438 SPV---------PSLVPTKTPAPSSTPKPTAtaSPTPKPTVTASPTPKPT----------------------VTASPTPK 486
Cdd:pfam03154 223 STAaphtliqqtPTLHPQRLPSPHPPLQPMT--QPPPPSQVSPQPLPQPSlhgqmppmphslqtgpshmqhpVPPQPFPL 300

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 487 PTVTAS----PTPKPTVT----ASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPT 558
Cdd:pfam03154 301 TPQSSQsqvpPGPSPAAPgqsqQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSG 380

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 559 VTPTASPTVRPTATAgvtPSPTAGTITRALASGEAGPLA-MPNGLALSLNPGDGGGKDLGGAQSSQAQLRPN 629
Cdd:pfam03154 381 PSPFQMNSNLPPPPA---LKPLSSLSTHHPPSAHPPPLQlMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPP 449
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 441-557 2.10e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.64  E-value: 2.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 441 PSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPkptvtASPTPKPTVTASPTPKPTVTASPTPKPTVT 520
Cdd:PRK14951  381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP-----VAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1071373367 521 ASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTP 557
Cdd:PRK14951  456 APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK10856 PRK10856
cytoskeleton protein RodZ;
498-582 2.27e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.80  E-value: 2.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 498 TVTASPTPKPTVTASPTPkptvTASPTPKPTVTASPTPKPTVTASPTPKPT--ATARPSVTPTVTPTASPTVRPTATAGV 575
Cdd:PRK10856  169 TTDPATTPAPAAPVDTTP----TNSQTPAVATAPAPAVDPQQNAVVAPSQAnvDTAATPAPAAPATPDGAAPLPTDQAGV 244


                  ....*..
gi 1071373367 576 TPSPTAG 582
Cdd:PRK10856  245 STPAADP 251
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 465-540 2.33e-06

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 50.66  E-value: 2.33e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 465 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtvtaSPTPKPTVT-ASPTPKPTVTASPTPKPTVTASPTPKPTVT 540
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGM----SAAPASAVEeKSPSEESATATAPESPSTSVPSSGSDAAST 149
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 415-538 2.36e-06

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 50.94  E-value: 2.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPtatASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 494
Cdd:pfam13254 220 SPSVSGISADSSPTKEEPSEEADTLSTDKEQSPAPTSASEPPP---KTKELPKDSEEPAAPSKSAEASTEKKEPDTESSP 296

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1071373367 495 PKPTVTASPTPkptvtASPTPKPTVTASPTPKPTVTASPTPKPT 538
Cdd:pfam13254 297 ETSSEKSAPSL-----LSPVSKASIDKPLSSPDRDPLSPKPKPQ 335
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 496-586 2.38e-06

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 50.84  E-value: 2.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 496 KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTAtarpsvtPTVTPTASPTVRPTATAGV 575
Cdd:PTZ00144  113 APLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAA-------KPPEPAPAAKPPPTPVARA 185

                          90
                  ....*....|.
gi 1071373367 576 TPSPTAGTITR 586
Cdd:PTZ00144  186 DPRETRVPMSR 196
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 463-602 2.38e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.53  E-value: 2.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 463 PTPKPTVTASPTPKPTVTASPTPkptvtASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPkptvtASPTPKPTVTAS 542
Cdd:PRK07764  386 GVAGGAGAPAAAAPSAAAAAPAA-----APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS-----PAGNAPAGGAPS 455

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 543 PTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMPNGL 602
Cdd:PRK07764  456 PPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRER 515
PRK10905 PRK10905
cell division protein DamX; Validated
 467-584 2.51e-06

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 50.32  E-value: 2.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 467 PTVTASPTPKPTVTASPTPkptvTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPK 546
Cdd:PRK10905  124 PTEPATVAPVRNGNASRQT----AKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPA 199

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1071373367 547 PTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTI 584
Cdd:PRK10905  200 ATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNV 237
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 486-560 2.60e-06

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 50.84  E-value: 2.60e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 486 KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP---TVTASPTPKPTATARPSVTPTVT 560
Cdd:PTZ00144  113 APLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAaakPPEPAPAAKPPPTPVARADPRET 190
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 437-573 2.61e-06

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 48.80  E-value: 2.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 437 VSPVPSLVPTKTPApSSTPKPTATASPTPKPTVTASPTpkpTVTASPTPKPT---VTASPTPKPTVTASPTPKPTVTaSP 513
Cdd:pfam09595  43 AALIITDIIDININ-KQHPEQEHHENPPLNEAAKEAPS---ESEDAPDIDPNnqhPSQDRSEAPPLEPAAKTKPSEH-EP 117

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 514 TPKPTVTASPTPKPTVTASPT-----PKPTVTASPTpkPTATARPSVTPTVTPTASPTVRPTATA 573
Cdd:pfam09595 118 ANPPDASNRLSPPDASTAAIReartfRKPSTGKRNN--PSSAQSDQSPPRANHEAIGRANPFAMS 180
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 413-585 2.63e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 51.46  E-value: 2.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 413 TLTPTIPTPSL----------TPTPFPTMPGEPGVSPVPSLV------PTKTPAPSSTPKPTATASPTPKPTVTASPTP- 475
Cdd:pfam05109 564 TPTPNATIPTLgktsptsavtTPTPNATSPTVGETSPQANTTnhtlggTSSTPVVTSPPKNATSAVTTGQHNITSSSTSs 643

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 476 ---KPTVTASPTPKPTVTASPTPKPTVT-ASPTPKPTVT----ASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP-- 545
Cdd:pfam05109 644 mslRPSSISETLSPSTSDNSTSHMPLLTsAHPTGGENITqvtpASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPge 723

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1071373367 546 ------KPTATARPSVTPTVTPTASPTVrpTATAGVTPSPTAGTIT 585
Cdd:pfam05109 724 vnvtkgTPPKNATSPQAPSGQKTAVPTV--TSTGGKANSTTGGKHT 767
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 422-583 2.68e-06

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 48.80  E-value: 2.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 422 SLTPTPFPTMPGEPGVSPVPSLVPTKTpapSSTPKPTATASPTPKPTVTASPTpkptvTASPTPKPT---VTASPTPKPT 498
Cdd:pfam09595  32 SLILIGESNKEAALIITDIIDININKQ---HPEQEHHENPPLNEAAKEAPSES-----EDAPDIDPNnqhPSQDRSEAPP 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 499 VTASPTPKPTVTaSPTPKPTVTASPTPKPTVTASPTPKPTVTasptpKPTATARPSVTPTVTPTASPTVRPTATAGVTPS 578
Cdd:pfam09595 104 LEPAAKTKPSEH-EPANPPDASNRLSPPDASTAAIREARTFR-----KPSTGKRNNPSSAQSDQSPPRANHEAIGRANPF 177


                  ....*
gi 1071373367 579 PTAGT 583
Cdd:pfam09595 178 AMSST 182
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 438-598 2.76e-06

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 48.80  E-value: 2.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 438 SPVPSLVPTKTPAPSSTPKPTAT---ASPTPKPTVTASPTPKPTVTASPTpkptvTASPTPKPTvtaSPTPKPTVTASPT 514
Cdd:pfam09595  32 SLILIGESNKEAALIITDIIDINinkQHPEQEHHENPPLNEAAKEAPSES-----EDAPDIDPN---NQHPSQDRSEAPP 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 515 PKPTVTASPTpkptvTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITralASGEAG 594
Cdd:pfam09595 104 LEPAAKTKPS-----EHEPANPPDASNRLSPPDASTAAIREARTFRKPSTGKRNNPSSAQSDQSPPRANHE---AIGRAN 175


                  ....
gi 1071373367 595 PLAM 598
Cdd:pfam09595 176 PFAM 179
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 433-524 2.82e-06

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 47.81  E-value: 2.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 433 GEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPtvtaSPTPKPtvtASPTPKPTVTASPTPKPtVTAS 512
Cdd:pfam05104  57 DESEEEPREFKTPDEAPSAALEPEPVPTPVPAPVEPEPAPPSESP----APSPKE---KKKKEKKSAKVEPAETP-EAVQ 128

                          90
                  ....*....|..
gi 1071373367 513 PTPKPTVTASPT 524
Cdd:pfam05104 129 PKPALEKEEPPA 140
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 415-593 2.85e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.14  E-value: 2.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPT-ATASPTPKPTVTASPTPKPTVTASPTPKPTVTAsp 493
Cdd:PRK07764  632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGaAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP-- 709

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 494 tPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTvTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATA 573
Cdd:PRK07764  710 -PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP-EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAE 787

                         170       180
                  ....*....|....*....|
gi 1071373367 574 GVTPSPTAGTITRALASGEA 593
Cdd:PRK07764  788 DDAPSMDDEDRRDAEEVAME 807
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 415-557 3.23e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 50.15  E-value: 3.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLT--PTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPtVTASPTPKPTVTAS 492
Cdd:NF040712  191 DFGRPLRPLAtvPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQP-EDEPVGPGAAPAAE 269

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367 493 PTPKpTVTASPTPKPTVTASPTPKPTVTASPT-PKPTVTASPTPKPTVTASPTPKPTATARPSVTP 557
Cdd:NF040712  270 PDEA-TRDAGEPPAPGAAETPEAAEPPAPAPAaPAAPAAPEAEEPARPEPPPAPKPKRRRRRASVP 334
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
435-577 3.35e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.03  E-value: 3.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 435 PGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPkptvtASPTPKPTVTASPT 514
Cdd:PRK12323  365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPAR-----RSPAPEALAAARQA 439

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1071373367 515 PKPTVTASPTPKPTVTASPTPkptvtASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTP 577
Cdd:PRK12323  440 SARGPGGAPAPAPAPAAAPAA-----AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP 497
PRK10905 PRK10905
cell division protein DamX; Validated
 477-594 3.51e-06

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 49.94  E-value: 3.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 477 PTVTASPTPKPTVTASPTPkptvTASPTPKPTVTASPTPKPTVTASPtpKPTVTASPTPKPTVTASPTPKPTATARPSVT 556
Cdd:PRK10905  124 PTEPATVAPVRNGNASRQT----AKTQTAERPATTRPARKQAVIEPK--KPQATAKTEPKPVAQTPKRTEPAAPVASTKA 197

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1071373367 557 PTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAG 594
Cdd:PRK10905  198 PAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAG 235
rne PRK10811
ribonuclease E; Reviewed
 448-581 3.97e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 50.81  E-value: 3.97e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  448 TPAPSSTPKPTATASPTPKPTVTASPTP--KPTVTASPTPKPTVTASpTPKPTVTASPTPKPTVTASPTPKPT---VTAS 522
Cdd:PRK10811   867 QPVVAEVPVAAAVEPVVSAPVVEAVAEVveEPVVVAEPQPEEVVVVE-TTHPEVIAAPVTEQPQVITESDVAVaqeVAEH 945

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367  523 PTP---KPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTA 581
Cdd:PRK10811   946 AEPvvePQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007
rplD PRK14907
50S ribosomal protein L4; Provisional
 466-572 4.04e-06

50S ribosomal protein L4; Provisional


Pssm-ID: 184900 [Multi-domain]  Cd Length: 295  Bit Score: 49.56  E-value: 4.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 466 KPTVTASPTPKPTVTASPT-PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKptVTASPTPKPTVTASPT 544
Cdd:PRK14907    1 MAETKKTTKKKTTEEKKPAaKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK--VTVKFEKTESVKKESV 78

                          90       100
                  ....*....|....*....|....*...
gi 1071373367 545 PKPTaTARPSVTPTVTPTASPTVRPTAT 572
Cdd:PRK14907   79 AKKT-VKKEAVSAEVFEASNKLFKNTSK 105
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
446-516 4.27e-06

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 49.63  E-value: 4.27e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1071373367 446 TKTPAPSSTPKPTATASP--TPKPTVTASPTPKPTVTASPTPKptvTASPTPKPTVTASPTPKPTVTASPTPK 516
Cdd:PRK13042   24 TTQAANATTPSSTKVEAPqsTPPSTKVEAPQSKPNATTPPSTK---VEAPQQTPNATTPSSTKVETPQSPTTK 93
PRK11633 PRK11633
cell division protein DedD; Provisional
 415-486 4.53e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 48.85  E-value: 4.53e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTasPTPKPTVTASPTPK 486
Cdd:PRK11633   77 AGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPK--PEPKPVVEEKAAPT 146
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 419-536 4.55e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.37  E-value: 4.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 419 PTPSLTPTPFPTMPGePGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVtASPTPKPTVTASPTPKPT 498
Cdd:PRK07764  398 APSAAAAAPAAAPAP-AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPP-PAAAPSAQPAPAPAAAPE 475

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1071373367 499 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPK 536
Cdd:PRK07764  476 PTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLR 513
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 485-562 4.65e-06

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 49.89  E-value: 4.65e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 485 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtvtaSPTPKPTVTASPTPKPTVTAsPTPKPTATARPSVTPTVTPT 562
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGM----SAAPASAVEEKSPSEESATA-TAPESPSTSVPSSGSDAAST 149
PRK11901 PRK11901
hypothetical protein; Reviewed
 463-533 4.81e-06

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 49.68  E-value: 4.81e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 463 PTPKPTVtASPTPKPTVTASPTPKPTVTASPTPKPTvtASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 533
Cdd:PRK11901  175 PTAPATV-APSKGAKVPATAETHPTPPQKPATKKPA--VNHHKTATVAVPPATSGKPKSGAASARALSSAP 242
PRK11901 PRK11901
hypothetical protein; Reviewed
 473-543 4.81e-06

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 49.68  E-value: 4.81e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 473 PTPKPTVtASPTPKPTVTASPTPKPTVTASPTPKPTvtASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 543
Cdd:PRK11901  175 PTAPATV-APSKGAKVPATAETHPTPPQKPATKKPA--VNHHKTATVAVPPATSGKPKSGAASARALSSAP 242
PHA03247 PHA03247
large tegument protein UL36; Provisional
 447-594 6.13e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 6.13e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  447 KTPAPSSTPKPTATASPTPKPTVTASPTPKPTvTASPTPKPTVTASPTPKPTvtasPTPKPTVTASPTPKPTVTASPTPK 526
Cdd:PHA03247   373 HHPKRASLPTRKRRSARHAATPFARGPGGDDQ-TRPAAPVPASVPTPAPTPV----PASAPPPPATPLPSAEPGSDDGPA 447

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367  527 PTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSpTAGTITRaLASGEAG 594
Cdd:PHA03247   448 PPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGADLAELLGRHPD-TAGTVVR-LAAREAA 513
rplD PRK14907
50S ribosomal protein L4; Provisional
 447-542 6.43e-06

50S ribosomal protein L4; Provisional


Pssm-ID: 184900 [Multi-domain]  Cd Length: 295  Bit Score: 49.18  E-value: 6.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 447 KTPAPSSTpkpTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKptVTASPTPKPTVTASPTPK 526
Cdd:PRK14907    6 KTTKKKTT---EEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK--VTVKFEKTESVKKESVAK 80

                          90
                  ....*....|....*.
gi 1071373367 527 PTVTASPTPKPTVTAS 542
Cdd:PRK14907   81 KTVKKEAVSAEVFEAS 96
rne PRK10811
ribonuclease E; Reviewed
 416-579 6.95e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 50.04  E-value: 6.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  416 PTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP 495
Cdd:PRK10811   857 EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDV 936

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  496 KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPT----A 571
Cdd:PRK10811   937 AVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVehnhA 1016


                   ....*...
gi 1071373367  572 TAGVTPSP 579
Cdd:PRK10811  1017 TAPMTRAP 1024
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 416-599 7.27e-06

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 50.08  E-value: 7.27e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  416 PTIPTPSLTPTPFPTMPGEPGVSP-VPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 494
Cdd:PRK10263   366 PQTGEPVIAPAPEGYPQQSQYAQPaVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGN 445

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  495 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARP--------------------- 553
Cdd:PRK10263   446 AWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPplyyfeeveekrarereqlaa 525

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367  554 -------------SVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMP 599
Cdd:PRK10263   526 wyqpipepvkepePIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAP 584
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
433-580 7.33e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 49.77  E-value: 7.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 433 GEPGVSPVPSLVPTKTpAPSSTPKPTATASPTPKPTVTASPTPkptvtaSPTPKPTVTASPTPKPTVTASPTPKPTVtas 512
Cdd:PRK14971  369 ASGGRGPKQHIKPVFT-QPAAAPQPSAAAAASPSPSQSSAAAQ------PSAPQSATQPAGTPPTVSVDPPAAVPVN--- 438

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 513 ptpkptvtasptpkPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPT 580
Cdd:PRK14971  439 --------------PPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGT 492
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 435-517 7.61e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.89  E-value: 7.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  435 PGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtVTASPTPKPTVTASPT 514
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP-AAAAAAAPAAAAVEDE 116


                   ...
gi 1071373367  515 PKP 517
Cdd:PRK12270   117 VTP 119
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
429-561 7.63e-06

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 49.16  E-value: 7.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 429 PTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPK--PTVTASPTpKPTVTASPTpkpTVTASPTPK 506
Cdd:pfam16014  49 QTASASPPSQHPAQAIPTILAPAAPPSQPSVVLSTLPAAMAVTPPIPAsmANVVAPPT-QPAASSTAA---CAVSSVLPE 124

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 507 PTVTASPTPKPTVTASPTPKPTvtaSPTPKPTVTASPTPKPTATARPSVTPTVTP 561
Cdd:pfam16014 125 IKIKQEAEPMDTSQSVPPLTPT---SISPALTSLANNLSVPAGDLLPGASPRKKP 176
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 483-551 8.20e-06

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 46.27  E-value: 8.20e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 483 PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVT-ASPTPKPTVTASPTPKPTVTASPTPKPTATA 551
Cdd:pfam05104  69 PDEAPSAALEPEPVPTPVPAPVEPEPAPPSESPAPSPKeKKKKEKKSAKVEPAETPEAVQPKPALEKEEP 138
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 501-586 8.71e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.89  E-value: 8.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  501 ASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPT 580
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                   ....*.
gi 1071373367  581 AGTITR 586
Cdd:PRK12270   114 EDEVTP 119
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
451-581 8.79e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.49  E-value: 8.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 451 PSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVtASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVT 530
Cdd:PRK12323  365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPP-AAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARG 443

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 531 ASPTPKPTvtASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTA 581
Cdd:PRK12323  444 PGGAPAPA--PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 415-508 8.97e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.42  E-value: 8.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLTPTPFPTMPGepgvsPVPSLVPTKTPAPSSTPKPTATASPTPkPTVTASPTPKPTVTASPTPkPTVTASPT 494
Cdd:PRK14950  364 PAPQPAKPTAAAPSPVRPT-----PAPSTRPKAAAAANIPPKEPVRETATP-PPVPPRPVAPPVPHTPESA-PKLTRAAI 436

                          90
                  ....*....|....
gi 1071373367 495 PKPTVTASPTPKPT 508
Cdd:PRK14950  437 PVDEKPKYTPPAPP 450
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 416-580 9.46e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 49.69  E-value: 9.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTPTPfPTMPGEPGVSPVPSLVptKTPAPSSTPKPT-------------ATASPTPKPTVTA-------SPTP 475
Cdd:PTZ00449  627 PESPKSPKRPPP-PQRPSSPERPEGPKII--KSPKPPKSPKPPfdpkfkekfyddyLDAAAKSKETKTTvvldesfESIL 703

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 476 KPTVTASP-TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTV----TASPTPKPTVTASPTPKPTAT 550
Cdd:PTZ00449  704 KETLPETPgTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTffheTPADTPLPDILAEEFKEEDIH 783

                         170       180       190
                  ....*....|....*....|....*....|
gi 1071373367 551 ARpsvtpTVTPTaSPTVRPTATAGVTPSPT 580
Cdd:PTZ00449  784 AE-----TGEPD-EAMKRPDSPSEHEDKPP 807
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 421-573 9.74e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 49.08  E-value: 9.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 421 PSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPT-ATASPTPKPTVTASPTpkptvTASPTPKPTVTASPTPKPTV 499
Cdd:COG3266   222 AAAELAALALLAAGAAEVLTARLVLLLLIIGSALKAPSqASSASAPATTSLGEQQ-----EVSLPPAVAAQPAAAAAAQP 296

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 500 TASPTPKPTVTASPTPKPTVTASPTPkptVTASPTPKPT-VTASPTPKPTATARPSVTPTVTPTASPTVRPTATA 573
Cdd:COG3266   297 SAVALPAAPAAAAAAAAPAEAAAPQP---TAAKPVVTETaAPAAPAPEAAAAAAAPAAPAVAKKLAADEQWLASQ 368
PRK11901 PRK11901
hypothetical protein; Reviewed
 450-523 9.92e-06

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 48.53  E-value: 9.92e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 450 APSSTPKPTATASPTPKPTVTASPTPKPTvTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 523
Cdd:PRK11901  170 NTSTLPTAPATVAPSKGAKVPATAETHPT-PPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARALSSAP 242
PHA03247 PHA03247
large tegument protein UL36; Provisional
 423-579 1.00e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 1.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  423 LTPTPFPTMPG--EPGVSPVPSlVPTKTPAPSSTPKPTATASPTP---KPTVTASPTPKPTV-------------TAS-- 482
Cdd:PHA03247  2469 LLGELFPGAPVyrRPAEARFPF-AAGAAPDPGGGGPPDPDAPPAPsrlAPAILPDEPVGEPVhprmltwirgleeLASdd 2547

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  483 ----PTPKPTVTASPTPKPTV-TASPTPKPTVTA--SPTPKPTVTASPTpKPTVTASPTPKPTVTASPTPKPTATARPSv 555
Cdd:PHA03247  2548 agdpPPPLPPAAPPAAPDRSVpPPRPAPRPSEPAvtSRARRPDAPPQSA-RPRAPVDDRGDPRGPAPPSPLPPDTHAPD- 2625

                          170       180
                   ....*....|....*....|....
gi 1071373367  556 TPTVTPTASPTVRPTATAGVTPSP 579
Cdd:PHA03247  2626 PPPPSPSPAANEPDPHPPPTVPPP 2649
rplD PRK14907
50S ribosomal protein L4; Provisional
 456-551 1.02e-05

50S ribosomal protein L4; Provisional


Pssm-ID: 184900 [Multi-domain]  Cd Length: 295  Bit Score: 48.41  E-value: 1.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 456 KPTATASPTPKPTVTASPT-PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKptVTASPTPKPTVTASPT 534
Cdd:PRK14907    1 MAETKKTTKKKTTEEKKPAaKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK--VTVKFEKTESVKKESV 78

                          90
                  ....*....|....*..
gi 1071373367 535 PKPTVTASPTPKPTATA 551
Cdd:PRK14907   79 AKKTVKKEAVSAEVFEA 95
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 367-493 1.07e-05

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 48.94  E-value: 1.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 367 QILSLGPDLQISQHITLAGW---------GPGWEIYTGRF---NG---QTTGLLLYNRFANTLT--PTIPTPSLTPTPFP 429
Cdd:pfam05616 257 EILSLKVDADPDKYIEATGYpgysekvevAPGTKVNMGPVtdrNGnpvQVAATFGRDAQGNTTAdvQVIPRPDLTPASAE 336

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 430 TmpgePGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 493
Cdd:pfam05616 337 A----PHAQPLPEVSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVP 396
PHA03292 PHA03292
envelope glycoprotein I; Provisional
 440-568 1.11e-05

envelope glycoprotein I; Provisional


Pssm-ID: 177577  Cd Length: 413  Bit Score: 48.80  E-value: 1.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 440 VPSLVPTkTPAPSstPKPTATASPTPKPTVTASPTPKPTVTASptpKPTVTASPTPKPTV----TASPTPKPTVTAS--- 512
Cdd:PHA03292  172 VPDPEPT-TARPE--PAAGYVATPTPRYLNAVTTSTYSRSMSS---QPAGAATATPTPTLdtglTTVAPPNETVVTGeta 245

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1071373367 513 --------PTPKPTV-------TASPTPKPTVTasptPKPTVTASPTPKPTATARPSVTPTV--TPTASPTVR 568
Cdd:PHA03292  246 llchwfqpSTRVPTLylhllgtTGNLTEDVLLT----EDSEILRTPPPDPSSSRSPGAGDDFkqTNSTSPKRR 314
PRK11901 PRK11901
hypothetical protein; Reviewed
 419-493 1.32e-05

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 48.14  E-value: 1.32e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 419 PTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPtaTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 493
Cdd:PRK11901  170 NTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKP--AVNHHKTATVAVPPATSGKPKSGAASARALSSAP 242
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 408-580 1.32e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.21  E-value: 1.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 408 NRFANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTA-SPTPK 486
Cdd:PRK07764  607 GPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAApPPAPA 686

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 487 PTVTASPTPKPtvTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPT 566
Cdd:PRK07764  687 PAAPAAPAGAA--PAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP 764

                         170
                  ....*....|....
gi 1071373367 567 VRPTATAGVTPSPT 580
Cdd:PRK07764  765 APAAAPAAAPPPSP 778
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 441-510 1.34e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 48.35  E-value: 1.34e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 441 PSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASP-TPKPTVTASPTPKPTVTASPTPKPTVT 510
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSGSDAA 147
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 407-535 1.35e-05

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 48.71  E-value: 1.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 407 YNRFANTLTPTiPTPSLTPTPFPTmPGEPGVSP---VPSLVPTKTPAPSSTPKPTATASPTPkPTVTASPTPKPTVTASP 483
Cdd:cd23959   119 FSASSSTQRET-HKTAQVAPPKAE-PQTAPVTPfgqLPMFGQHPPPAKPLPAAAAAQQSSAS-PGEVASPFASGTVSASP 195

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 484 TPKPTVTASPTPKPTVTASPTPKPTVTASPtpkPTVTASPTPKPTVTASPTP 535
Cdd:cd23959   196 FATATDTAPSSGAPDGFPAEASAPSPFAAP---ASAASFPAAPVANGEAATP 244
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 415-549 1.38e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 48.71  E-value: 1.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLV----PTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVT 490
Cdd:PRK07994  367 EPEVPPQSAAPAASAQATAAPTAAVAPPQApavpPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAA 446

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 491 ASPTPKPTVT---ASPTPKPTVTASPTPKP------TVTASPTPKPTVTASPTPKPTVTASPTPKPTA 549
Cdd:PRK07994  447 SRARPVNSALerlASVRPAPSALEKAPAKKeayrwkATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
PRK11901 PRK11901
hypothetical protein; Reviewed
 445-513 1.45e-05

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 48.14  E-value: 1.45e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 445 PTkTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 513
Cdd:PRK11901  175 PT-APATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARALSSAP 242
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 499-599 1.46e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 48.65  E-value: 1.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 499 VTASPTPKP-TVTASPTPkptvtASPTPK-PTVTASPTPKPTVTASPTPKPTATARPsvtptvtPTASPTVRPTATAGVT 576
Cdd:PRK14950  356 IEALLVPVPaPQPAKPTA-----AAPSPVrPTPAPSTRPKAAAAANIPPKEPVRETA-------TPPPVPPRPVAPPVPH 423

                          90       100
                  ....*....|....*....|...
gi 1071373367 577 PSPTAGTITRALASGEAGPLAMP 599
Cdd:PRK14950  424 TPESAPKLTRAAIPVDEKPKYTP 446
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 432-602 1.56e-05

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 48.92  E-value: 1.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 432 PGEPGVSPVpslvpTKTPAPSSTPKPTATASPTPKPTVTASPTpKPTVTASP-TPKPTVTASPTPKPtvtasPTPK-PTV 509
Cdd:PTZ00449  549 PGETKEGEV-----GKKPGPAKEHKPSKIPTLSKKPEFPKDPK-HPKDPEEPkKPKRPRSAQRPTRP-----KSPKlPEL 617

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 510 TASP-TPK-PTVTASPT--PKPTVTASPTpKPTVTASP-TPKPTATARPSVTPTVTPT-------ASPTVRPTATAGVTP 577
Cdd:PTZ00449  618 LDIPkSPKrPESPKSPKrpPPPQRPSSPE-RPEGPKIIkSPKPPKSPKPPFDPKFKEKfyddyldAAAKSKETKTTVVLD 696

                         170       180
                  ....*....|....*....|....*
gi 1071373367 578 SPTAGTITRALASGEAGPLAMPNGL 602
Cdd:PTZ00449  697 ESFESILKETLPETPGTPFTTPRPL 721
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 433-534 1.67e-05

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 45.50  E-value: 1.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 433 GEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTvtasPTPKPTVTASPTPKPtvtaSPTPKPtvtASPTPKPTVTAS 512
Cdd:pfam05104  51 PESEQADESEEEPREFKTPDEAPSAALEPEPVPTPV----PAPVEPEPAPPSESP----APSPKE---KKKKEKKSAKVE 119

                          90       100
                  ....*....|....*....|..
gi 1071373367 513 PTPKPtVTASPTPKPTVTASPT 534
Cdd:pfam05104 120 PAETP-EAVQPKPALEKEEPPA 140
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
448-526 1.78e-05

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 47.71  E-value: 1.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 448 TPAPSSTPKPTATASpTPKPTVTASP--TPKPTVTASPTPKPTVTASPTPKptvTASPTPKPTVTASPTPKPTVTASPTP 525
Cdd:PRK13042   17 TTGVITTTTQAANAT-TPSSTKVEAPqsTPPSTKVEAPQSKPNATTPPSTK---VEAPQQTPNATTPSSTKVETPQSPTT 92


                  .
gi 1071373367 526 K 526
Cdd:PRK13042   93 K 93
SPESP1 pfam15754
Sperm equatorial segment protein 1;
435-550 1.80e-05

Sperm equatorial segment protein 1;


Pssm-ID: 464848 [Multi-domain]  Cd Length: 322  Bit Score: 47.92  E-value: 1.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 435 PGVSPVPSLVptkTPAPSSTpkpTATASPTPKPTVTASPTPKPTVTASPTPKPT----VTASPTP---KPTVTASPTPKP 507
Cdd:pfam15754  61 HGVNSTENDV---LINPEEE---ETTPFPTFGFTLERKKRKKTESTAFWSIKPNnvsiVLHTEEPyieKPEPEPEPEPEP 134

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1071373367 508 TVTASPTPKPTVTASP-TPKPTVTaSPTPKPTVTASPTPKPTAT 550
Cdd:pfam15754 135 EPEPTSKTFSRVTDFPrRSAPTVT-SPPPATTTLSTSTDEDTST 177
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 471-599 1.82e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.56  E-value: 1.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 471 ASPTPKPTVTASPTPKPTVTASPTPKPtvtasPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTAT 550
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAP-----VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1071373367 551 ARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMP 599
Cdd:PRK14951  442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PHA03247 PHA03247
large tegument protein UL36; Provisional
 419-595 1.93e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 1.93e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  419 PTPSLTPTPFPTMPGEPGVSP-------VPSLVPTKTPAPSSTPKPTAT--------------ASPTPKP----TVTASP 473
Cdd:PHA03247   274 GATGPPPPPEAAAPNGAAAPPdgvwgaaLAGAPLALPAPPDPPPPAPAGdaeeeddedgamevVSPLPRPrqhyPLGFPK 353

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  474 TPKPTVTAsPTPKPTVTASPTPKPTvtaSPTPKPTVTASPTPKPTVTASPTPKPTvtasPTPKPTVTASPtPKPTATARP 553
Cdd:PHA03247   354 RRRPTWTP-PSSLEDLSAGRHHPKR---ASLPTRKRRSARHAATPFARGPGGDDQ----TRPAAPVPASV-PTPAPTPVP 424

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1071373367  554 SVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGP 595
Cdd:PHA03247   425 ASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDP 466
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 425-504 1.98e-05

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 45.11  E-value: 1.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 425 PTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTvTASPTPKPTVTASPTPKPtVTASPTPKPTVTASPT 504
Cdd:pfam05104  63 PREFKTPDEAPSAALEPEPVPTPVPAPVEPEPAPPSESPAPSPK-EKKKKEKKSAKVEPAETP-EAVQPKPALEKEEPPA 140
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 429-505 2.02e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 48.73  E-value: 2.02e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367  429 PTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP 505
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVE 114
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 495-574 2.03e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 47.97  E-value: 2.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 495 PKPTVTASPTPKPTVTASPTPkptvtaSPTPKPTVTASPTPKPTVTA---SPTPKPTATARPSVTPTVTPTASPTVRPTA 571
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTP------TPSPPASPASGMSAAPASAVeekSPSEESATATAPESPSTSVPSSGSDAASTL 150


                  ...
gi 1071373367 572 TAG 574
Cdd:TIGR00601 151 VVG 153
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 445-520 2.09e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 47.97  E-value: 2.09e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 445 PTKTPAPSSTPKPTATASPTPKPTVTASPTPKPtvtaSPTPKPTVT-ASPTPKPTVTASPTPKPTVTASPTPKPTVT 520
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGM----SAAPASAVEeKSPSEESATATAPESPSTSVPSSGSDAAST 149
motB PRK12799
flagellar motor protein MotB; Reviewed
 433-568 2.20e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 47.79  E-value: 2.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 433 GEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPkptvTASPTPKPTVTASPTPKPTVTASPTpkpTVTASPTPKPTVTAS 512
Cdd:PRK12799  294 DTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSP----AVIPSSVTTQSATTTQASAVALSSA---GVLPSDVTLPGTVAL 366

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367 513 PTPKPtvtASPTPKPTVTASPTPKPTVTASPTPKPTATARPSvTPTVTPTASPTVR 568
Cdd:PRK12799  367 PAAEP---VNMQPQPMSTTETQQSSTGNITSTANGPTTSLPA-APASNIPVSPTSR 418
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
461-538 2.22e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 48.04  E-value: 2.22e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 461 ASPTPKPTVTASPTPKPTVTASPTPKPtVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 538
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPP-APIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPP 437
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
471-548 2.22e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 48.04  E-value: 2.22e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 471 ASPTPKPTVTASPTPKPTVTASPTPKPtVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 548
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPP-APIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPP 437
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 427-506 2.27e-05

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 47.75  E-value: 2.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 427 PFPTMpgEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPtPKPTVTASPTPKPTVTASPTPK 506
Cdd:PTZ00144  114 PLSEI--DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKP-PEPAPAAKPPPTPVARADPRET 190
PRK11901 PRK11901
hypothetical protein; Reviewed
 453-590 2.44e-05

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 47.37  E-value: 2.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 453 STPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT---------------------VTASPTPKPTVTA 511
Cdd:PRK11901   93 SSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNgqqrielpgnisdalsqqqgqVNAASQNAQGNTS 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 512 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRP-TATAGVTPSPTAGTITRALAS 590
Cdd:PRK11901  173 TLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSgAASARALSSAPASHYTLQLSS 252
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
406-595 2.53e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 48.06  E-value: 2.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 406 LYNRFANTLTPTIPTPSLTPTPFPTMPGEPGvSPVPSLVPTKTPAPSSTPKPTATASPT---------PKPTVTASPTPK 476
Cdd:PRK12727   50 LVQRALETARSDTPATAAAPAPAPQAPTKPA-APVHAPLKLSANANMSQRQRVASAAEDmiaamalrqPVSVPRQAPAAA 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 477 PtVTASPTPKPtVTASPTPKPTVTASPTPKPTVTASPTP--KPTVTASPTPKPTVTASPTPKPT---VTASPTPKPTATA 551
Cdd:PRK12727  129 P-VRAASIPSP-AAQALAHAAAVRTAPRQEHALSAVPEQlfADFLTTAPVPRAPVQAPVVAAPApvpAIAAALAAHAAYA 206

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1071373367 552 RPSVTPTVTPTA------SPTVRPTATAGVTPSPTAGTITRALASGEAGP 595
Cdd:PRK12727  207 QDDDEQLDDDGFdlddalPQILPPAALPPIVVAPAAPAALAAVAAAAPAP 256
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
504-572 2.59e-05

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 46.93  E-value: 2.59e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 504 TPKPTVTASP--TPKPTVTASPTPKPTVTASPTPKptvTASPTPKPTATArPSVTPTVTPTaSPTVRPTAT 572
Cdd:PRK13042   32 TPSSTKVEAPqsTPPSTKVEAPQSKPNATTPPSTK---VEAPQQTPNATT-PSSTKVETPQ-SPTTKQVPT 97
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
491-566 2.68e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 48.04  E-value: 2.68e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 491 ASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTA-SPTPKPTVTASPTPKPTATARPSVTPTVTPTASPT 566
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAtTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPP 437
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 423-563 2.97e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 48.07  E-value: 2.97e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  423 LTPTPfPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASptpkPTVTAS 502
Cdd:TIGR00927  314 LEHTP-ATSEGQVTISIMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIASATFRGLEKNPSTAPSTPAT----PRVRAV 388

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367  503 PTPKptVTASPTPKPTVTASPTPKPTVTASPTPKptvtaspTPKPTATARPSVTPTVTPTA 563
Cdd:TIGR00927  389 LTTQ--VHHCVVVKPAPAVPTTPSPSLTTALFPE-------APSPSPSALPPGQPDLHPKA 440
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
481-558 3.02e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 47.65  E-value: 3.02e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 481 ASPTPKPTVTASPTPKPTVTASPTPKPtVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPT 558
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPP-APIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPP 437
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
484-550 3.24e-05

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 46.93  E-value: 3.24e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 484 TPKPTVTASP--TPKPTVTASPTPKPTVTASPTPKptvTASPTPKPTVTASPTPKPTVTASPTPKPTAT 550
Cdd:PRK13042   32 TPSSTKVEAPqsTPPSTKVEAPQSKPNATTPPSTK---VEAPQQTPNATTPSSTKVETPQSPTTKQVPT 97
PHA03292 PHA03292
envelope glycoprotein I; Provisional
 416-563 3.33e-05

envelope glycoprotein I; Provisional


Pssm-ID: 177577  Cd Length: 413  Bit Score: 47.26  E-value: 3.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSL-TPTPFPTMPGEPGVSPVPS-LVPTKTPAPSSTPKPTATASPTPKPTV----TASPTPKPTVTASPTPKPTV 489
Cdd:PHA03292  170 PTVPDPEPtTARPEPAAGYVATPTPRYLnAVTTSTYSRSMSSQPAGAATATPTPTLdtglTTVAPPNETVVTGETALLCH 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 490 TASP-TPKPTV-------TASPTPKPTVTasptPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARpSVTPTVTP 561
Cdd:PHA03292  250 WFQPsTRVPTLylhllgtTGNLTEDVLLT----EDSEILRTPPPDPSSSRSPGAGDDFKQTNSTSPKRRNK-IVAMIVIP 324


                  ..
gi 1071373367 562 TA 563
Cdd:PHA03292  325 TA 326
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 440-554 3.37e-05

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 47.26  E-value: 3.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 440 VPSLVPTKTPAPSSTPKPTATASPTPKPTVTAsPTPKPT---VTASPTPKPTVTASP--TPKPTVTASPTPKPTVTASPT 514
Cdd:PHA03291  163 LAAFPAEGTLAAPPLGEGSADGSCDPALPLSA-PRLGPAdvfVPATPRPTPRTTASPetTPTPSTTTSPPSTTIPAPSTT 241

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1071373367 515 PkPTVTASPTPKPTVTASPtPKPTVTASPTPKPTATARPS 554
Cdd:PHA03291  242 I-AAPQAGTTPEAEGTPAP-PTPGGGEAPPANATPAPEAS 279
PRK04654 PRK04654
sec-independent translocase; Provisional
 453-565 3.56e-05

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 45.96  E-value: 3.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 453 STPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVT-ASP-TPKPTVTASPTPKPTVTASPTpkpTVT 530
Cdd:PRK04654  103 TSATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAqAQPiAPAPHQTLVPAPHDTIVPAPH---AAH 179

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1071373367 531 ASPTPKPTVTASPTPKPTATARPSVTPTVTPTASP 565
Cdd:PRK04654  180 LPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 410-599 3.71e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.86  E-value: 3.71e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  410 FANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSL--VPTKTPAPSSTPKPTATA------------------------SP 463
Cdd:PHA03307   175 PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRrsSPISASASSPAPAPGRSAaddagasssdssssessgcgwgpeNE 254

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  464 TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT-----VTASPTPKPTVTASPTPKPTVTASPTPKPT 538
Cdd:PHA03307   255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSpsspgSGPAPSSPRASSSSSSSRESSSSSTSSSSE 334

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367  539 VT----ASPTPKPTATARPSVTPTVTPTASPTVRPTAT-AGVTPSPTAGTITRALASGEAGPLAMP 599
Cdd:PHA03307   335 SSrgaaVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSrAPSSPAASAGRPTRRRARAAVAGRARR 400
motB PRK12799
flagellar motor protein MotB; Reviewed
 448-581 3.77e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 47.02  E-value: 3.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 448 TPAPSSTPKPTATASPTPKPTVTASPTPkptvTASPTPKPTVTASPTPKPTVTASPTpkpTVTASPTPKPTVTASPTPKP 527
Cdd:PRK12799  299 VPVAAVTPSSAVTQSSAITPSSAAIPSP----AVIPSSVTTQSATTTQASAVALSSA---GVLPSDVTLPGTVALPAAEP 371

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 528 tvtasptpkptVTASPTPKPTATARPSVTPTVTPTAS-PTVR-PTATAG-VTPSPTA 581
Cdd:PRK12799  372 -----------VNMQPQPMSTTETQQSSTGNITSTANgPTTSlPAAPASnIPVSPTS 417
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 493-563 3.80e-05

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 44.34  E-value: 3.80e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 493 PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVT-ASPTPKPTVTASPTPKPTATARPSVTPTVTPTA 563
Cdd:pfam05104  69 PDEAPSAALEPEPVPTPVPAPVEPEPAPPSESPAPSPKeKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 450-573 3.91e-05

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 46.87  E-value: 3.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 450 APSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTAsPTPKPT---VTASPTPKPTVTASP--TPKPTVTASPT 524
Cdd:PHA03291  153 ATNASLFPLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSA-PRLGPAdvfVPATPRPTPRTTASPetTPTPSTTTSPP 231

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1071373367 525 PKPTVTASPTPkPTVTASPTPKPTATARPSvTPTVTPTASPTVRPTATA 573
Cdd:PHA03291  232 STTIPAPSTTI-AAPQAGTTPEAEGTPAPP-TPGGGEAPPANATPAPEA 278
PHA03255 PHA03255
BDLF3; Provisional
 422-575 3.95e-05

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 46.05  E-value: 3.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 422 SLTPTPfPTMPGEPGVSPVPSLVPTKTpAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPT---PKPTVTASPTPKPT 498
Cdd:PHA03255   26 SSGSST-ASAGNVTGTTAVTTPSPSAS-GPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTtvtPVPTTSNASTINVT 103

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 499 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT--VTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGV 575
Cdd:PHA03255  104 TKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITnaTTLAPTLSSKGTSNATKTTAELPTVPDERQPSLSYGL 182
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 411-584 3.96e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 47.26  E-value: 3.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKP---TVTASPTPKP 487
Cdd:pfam17823 170 AASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNSSPaagTVTAAVGTVT 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 488 TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP----------------KPTV--TASPTPKPTA 549
Cdd:pfam17823 250 PAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPSDTMARNPAApmgaqaqgpiiqvstdQPVHntAGEPTPSPSN 329

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1071373367 550 TARPSVTPTVTPTASPTVrPTATAGVTPSPTAGTI 584
Cdd:pfam17823 330 TTLEPNTPKSVASTNLAV-VTTTKAQAKEPSASPV 363
PRK10856 PRK10856
cytoskeleton protein RodZ;
436-530 4.18e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 46.56  E-value: 4.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 436 GVSPVPsLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP 515
Cdd:PRK10856  158 SGQSVP-LDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAP 236

                          90
                  ....*....|....*
gi 1071373367 516 KPTVTASPTPKPTVT 530
Cdd:PRK10856  237 LPTDQAGVSTPAADP 251
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 421-558 4.22e-05

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 46.79  E-value: 4.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 421 PSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPK-PTVTASPTPKPTV 499
Cdd:cd23959   112 AARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQSSAsPGEVASPFASGTV 191

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 500 TASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPT 558
Cdd:cd23959   192 SASPFATATDTAPSSGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAATPTHACTI 250
PRK10819 PRK10819
transport protein TonB; Provisional
 479-588 4.25e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 45.83  E-value: 4.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 479 VTASPTPKPTVtASPTPKPTVTASPTPKPtVTASPTPKPTVTASPTPKptvtasPTPKPtvtaSPTPKP----------- 547
Cdd:PRK10819   53 VAPADLEPPQA-VQPPPEPVVEPEPEPEP-IPEPPKEAPVVIPKPEPK------PKPKP----KPKPKPvkkveeqpkre 120

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1071373367 548 --TATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRAL 588
Cdd:PRK10819  121 vkPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRAL 163
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 499-574 4.29e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.58  E-value: 4.29e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367  499 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAG 574
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 448-585 4.39e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 47.26  E-value: 4.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 448 TPAPSSTPKPTATASPTPKPT-VTASPTPKPTVTASPTPKPTVTASPTPK-PTVTASPTPKPTVTASPTpkpTVTASPTP 525
Cdd:pfam17823  64 TAAPAPVTLTKGTSAAHLNSTeVTAEHTPHGTDLSEPATREGAADGAASRaLAAAASSSPSSAAQSLPA---AIAALPSE 140

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 526 KPTVTASPTPKPTVTASPTpkpTATARPSVTPTVTPT----ASPTVRPTATAGVTPSPTAGTIT 585
Cdd:pfam17823 141 AFSAPRAAACRANASAAPR---AAIAAASAPHAASPAprtaASSTTAASSTTAASSAPTTAASS 201
Not5 COG5665
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];
471-583 4.60e-05

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];


Pssm-ID: 444384 [Multi-domain]  Cd Length: 874  Bit Score: 47.35  E-value: 4.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 471 ASPTPKPTVTASpTPKPTVTASPTPKPTVTASPTPKPTvTASPTPKPTVTASPTPkPTVTASPTPKPTVTASPTPKPTAT 550
Cdd:COG5665   243 LATPPATPATEE-KSSQQPKSQPTSPSGGTTPPSTNQL-TTSNTPTSTAKAQPQP-PTKKQPAKEPPSDTASGNPSAPSV 319

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1071373367 551 ARPSVTPTVTPTASPTVRPT--ATAGVTPSPTAGT 583
Cdd:COG5665   320 LINSDSPTSEDPATASVPTTeeTTAFTTPSSVPST 354
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 424-532 4.86e-05

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 46.87  E-value: 4.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 424 TPTPFPTMPGEPGVSPVPSLvPTKTP--APSSTPKPtatASPTPKPTVTASP--TPKPTVTASPTPKPTVTASPTPKPTV 499
Cdd:PHA03291  171 TLAAPPLGEGSADGSCDPAL-PLSAPrlGPADVFVP---ATPRPTPRTTASPetTPTPSTTTSPPSTTIPAPSTTIAAPQ 246

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1071373367 500 TASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 532
Cdd:PHA03291  247 AGTTPEAEGTPAPPTPGGGEAPPANATPAPEAS 279
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
474-536 5.06e-05

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 46.16  E-value: 5.06e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 474 TPKPTVTASP--TPKPTVTASPTPKPTVTASPTPKptvTASPTPKPTVTASPTPKPTVTASPTPK 536
Cdd:PRK13042   32 TPSSTKVEAPqsTPPSTKVEAPQSKPNATTPPSTK---VEAPQQTPNATTPSSTKVETPQSPTTK 93
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 411-532 5.07e-05

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 44.95  E-value: 5.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPgepgvSPVPSLVPTKTPAPSSTPKPTATASPtpkPTVTASPTPKPTVTASPTPKPTVT 490
Cdd:pfam09595  73 AAKEAPSESEDAPDIDPNNQHP-----SQDRSEAPPLEPAAKTKPSEHEPANP---PDASNRLSPPDASTAAIREARTFR 144

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1071373367 491 asptpKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 532
Cdd:pfam09595 145 -----KPSTGKRNNPSSAQSDQSPPRANHEAIGRANPFAMSS 181
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 419-628 5.39e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 5.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 419 PTPSLTPTPFPTMPG-EPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP-- 495
Cdd:PRK07764  435 PAPAPAPPSPAGNAPaGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLre 514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 496 --------------------KPTVTASPTPKPTVT-ASPTP---------------------------KPTVTASPTPKP 527
Cdd:PRK07764  515 rwpeilaavpkrsrktwailLPEATVLGVRGDTLVlGFSTGglarrfaspgnaevlvtalaeelggdwQVEAVVGPAPGA 594

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 528 -TVTASPTPKPTVTASPTPKPTATARPSVTP-------TVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMP 599
Cdd:PRK07764  595 aGGEGPPAPASSGPPEEAARPAAPAAPAAPAapapagaAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG 674

                         250       260
                  ....*....|....*....|....*....
gi 1071373367 600 NGLALSLNPGDGGGKDLGGAQSSQAQLRP 628
Cdd:PRK07764  675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAP 703
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 413-490 5.63e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.43  E-value: 5.63e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 413 TLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTataSPTPKPTVTASPTPKPTVTASPTPKPTVT 490
Cdd:TIGR00601  75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEK---SPSEESATATAPESPSTSVPSSGSDAAST 149
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 422-496 5.75e-05

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 46.60  E-value: 5.75e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 422 SLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVtasPTPKPTVTASPTPKPTVTASPTPK 496
Cdd:PTZ00144  119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAA---KPPEPAPAAKPPPTPVARADPRET 190
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 407-590 5.77e-05

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 46.99  E-value: 5.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 407 YNRFANTLTPtiPTPSLTPTPFPTMPGEPGVSPVPS---LVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTAsp 483
Cdd:TIGR01645 275 YLRVGKCVTP--PDALLQPATVSAIPAAAAVAAAAAtakIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSS-- 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 484 tPKPTVTASPTPKPTVTASPTPKPTVTASPTPkPTVTASPT--PKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTP 561
Cdd:TIGR01645 351 -AKKEAEEVPPLPQAAPAVVKPGPMEIPTPVP-PPGLAIPSlvAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDD 428

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1071373367 562 T---ASPTVRPTATAGVTPSPTAGTITRALAS 590
Cdd:TIGR01645 429 TlawKEPSKEDQTSEDGKMLAIMGEAAAALAL 460
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
451-528 6.10e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 46.88  E-value: 6.10e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 451 PSSTPKPTATASPTPKPTVTASPTPKPtVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 528
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPP-APIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPP 437
PRK10856 PRK10856
cytoskeleton protein RodZ;
479-564 6.15e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 46.17  E-value: 6.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 479 VTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPT 558
Cdd:PRK10856  164 LDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAG 243


                  ....*.
gi 1071373367 559 VTPTAS 564
Cdd:PRK10856  244 VSTPAA 249
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 419-500 7.20e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.81  E-value: 7.20e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  419 PTPSLTPTPfPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 498
Cdd:PRK12270    38 PGSTAAPTA-AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116


                   ..
gi 1071373367  499 VT 500
Cdd:PRK12270   117 VT 118
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 449-519 7.53e-05

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 43.61  E-value: 7.53e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 449 PAPSSTPKPTATASPtPKPTVTASPTPKpTVTASPTPKPTVTASPtPKPTVTASPTPKPTVTASPTPKPTV 519
Cdd:COG3147     1 PAEEAAAAPAAAAAP-AAPAAAAAPAPA-AAAAAAAPKPAAKPAA-PKPAAAAAAAPAAKAAAPAGGGWVV 68
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
448-529 7.84e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 46.38  E-value: 7.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 448 TPAPSSTPKPTATASPTPKP---TVTASPTPKPTVTASPTPKPTVTASpTPKPTVTASPTPKpTVTASPTPKPTVTASPT 524
Cdd:PRK11907   32 VTTTPATSTEAEQTTPVESDateEADNTETPVAATTAAEAPSSSETAE-TSDPTSEATDTTT-SEARTVTPAATETSKPV 109


                  ....*
gi 1071373367 525 PKPTV 529
Cdd:PRK11907  110 EGQTV 114
PHA03379 PHA03379
EBNA-3A; Provisional
 427-577 7.93e-05

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 46.59  E-value: 7.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 427 PFPTMPGEPGvsPVPSLVP-TKTPAPSSTPKPTATASPTPK-PTV---TASPTPKPTVTASPTPKPTVTASPTPKPTVTA 501
Cdd:PHA03379  464 PCPVAQLPPG--PLQDLEPgDQLPGVVQDGRPACAPVPAPAgPIVrpwEASLSQVPGVAFAPVMPQPMPVEPVPVPTVAL 541

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 502 SP--TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP--KPTATARPSVTPTvtpTASPTVRPTATAGVTP 577
Cdd:PHA03379  542 ERpvCPAPPLIAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQMSvrDRLARLRAEAQPY---QASVEVQPPQLTQVSP 618
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 486-581 8.50e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.40  E-value: 8.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 486 KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASP 565
Cdd:PRK07994  360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                          90
                  ....*....|....*.
gi 1071373367 566 TVRPTATAGVTPSPTA 581
Cdd:PRK07994  440 KSEPAAASRARPVNSA 455
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 415-585 8.52e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 46.11  E-value: 8.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSlVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 494
Cdd:pfam17823 144 APRAAACRANASAAPRAAIAAASAPHAA-SPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHP 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 495 PKPTVTA-----SPTPKPTVTASPTPKP----TVTA---------------SPTPKPTVTASPTPKPTVTASPTPKPTAT 550
Cdd:pfam17823 223 AAGTALAavgnsSPAAGTVTAAVGTVTPaalaTLAAaagtvasaagtinmgDPHARRLSPAKHMPSDTMARNPAAPMGAQ 302

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1071373367 551 ARPSVT------PTVTPTASPTVRPTATAGVTPSPTAGTIT 585
Cdd:pfam17823 303 AQGPIIqvstdqPVHNTAGEPTPSPSNTTLEPNTPKSVAST 343
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
419-590 8.66e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 46.11  E-value: 8.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 419 PTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPtvtasPTPKPTVTASPTPKPTVTASPTPKPT 498
Cdd:PRK14948  363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKA-----SPPIPVPAEPTEPSPTPPANAANAPP 437

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 499 ----------VTASPTPKPT-----------------------------------------------------VTASPTP 515
Cdd:PRK14948  438 slnleelwqqILAKLELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnlESQSGSA 517

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 516 KPTVTASPTPKPTVTASPTPKPtvTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALAS 590
Cdd:PRK14948  518 SNTAKTPPPPQKSPPPPAPTPP--LPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTK 590
PRK10856 PRK10856
cytoskeleton protein RodZ;
478-565 8.89e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 45.79  E-value: 8.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 478 TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSvtp 557
Cdd:PRK10856  169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVS--- 245


                  ....*...
gi 1071373367 558 tvTPTASP 565
Cdd:PRK10856  246 --TPAADP 251
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 503-576 9.45e-05

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 43.19  E-value: 9.45e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 503 PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVT-ASPTPKPTATARPSVTPTVtptASPTVRPTATAGVT 576
Cdd:pfam05104  69 PDEAPSAALEPEPVPTPVPAPVEPEPAPPSESPAPSPKeKKKKEKKSAKVEPAETPEA---VQPKPALEKEEPPA 140
HC2 pfam07382
Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like ...
 446-590 9.70e-05

Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like nucleoprotein HC2 (approximately 200 residues long), which seems to be found mostly in Chlamydia. HC2 functions in DNA condensation, although it has been suggested that it also has other roles.


Pssm-ID: 369339 [Multi-domain]  Cd Length: 187  Bit Score: 44.38  E-value: 9.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 446 TKTPAPSSTP--KPTATASPTPKPTVTASPTPKPTVTASpTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 523
Cdd:pfam07382  10 SKKTAAKKAAvrKPAAKKAAAKKTVVRKVAAKKPAARKT-VAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 524 TPKPTV----TASPTPKPTVTA------------SPTPKPTA---TARPSVTPTVTP---TASPTvRPTATAGVTPSPTA 581
Cdd:pfam07382  89 TAKKVAakkvVAKKTVAKKAAAkkpaakkavakkAVARKPAAkkaVAKKAASTCHKNhkhTAACK-RVASSSATRAACGS 167


                  ....*....
gi 1071373367 582 GTITRALAS 590
Cdd:pfam07382 168 KSRVNPAHG 176
PHA03247 PHA03247
large tegument protein UL36; Provisional
 426-527 1.04e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 1.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  426 TPFPTMPGePGVSPVPSlvptkTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPtpkPTVTASPTP 505
Cdd:PHA03247   393 TPFARGPG-GDDQTRPA-----APVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQP---PAPATEPAP 463

                           90       100
                   ....*....|....*....|..
gi 1071373367  506 KPTVTASPTPKPTVTASPTPKP 527
Cdd:PHA03247   464 DDPDDATRKALDALRERRPPEP 485
PHA03247 PHA03247
large tegument protein UL36; Provisional
 440-583 1.04e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 1.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  440 VPSLVPTKTPA---PSSTPKPTATASPTPKPTVTASPTPKP------TVTASPTPKPTVTASPTPKPTVTA--------- 501
Cdd:PHA03247   254 APAPPPVVGEGadrAPETARGATGPPPPPEAAAPNGAAAPPdgvwgaALAGAPLALPAPPDPPPPAPAGDAeeeddedga 333

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  502 ----SPTPKPTVTAS--------PTPKP------------TVTASPTPKPTVTASPTPKPTVTASP----TPKPtATARP 553
Cdd:PHA03247   334 mevvSPLPRPRQHYPlgfpkrrrPTWTPpssledlsagrhHPKRASLPTRKRRSARHAATPFARGPggddQTRP-AAPVP 412

                          170       180       190
                   ....*....|....*....|....*....|
gi 1071373367  554 SVTPTVTPTASPTVRPTATAGVTPSPTAGT 583
Cdd:PHA03247   413 ASVPTPAPTPVPASAPPPPATPLPSAEPGS 442
Cuticle_3 pfam11018
Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties ...
 449-563 1.05e-04

Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties are optimized for biological function. The major components are the chitin filament system and the cuticular proteins, and the cuticle's properties are determined largely by the interactions between these two sets of molecules. The proteins can be ordered by species.


Pssm-ID: 431611 [Multi-domain]  Cd Length: 182  Bit Score: 43.99  E-value: 1.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 449 PAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 528
Cdd:pfam11018  55 PAPVVTKSAYAAPAPVVTTYAHAAPAPVVAKTVYAAPAVVVYAAPAPVVAKTVTYAAPAVHYAAPAPVVAKTVYAAPAVQ 134

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1071373367 529 VTASPTPkptVTASPTPKPTATARPSVTPTVTPTA 563
Cdd:pfam11018 135 HYAAPAP---VEAAAHAAPVVAAAPAAYVKYSPAV 166
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 432-542 1.05e-04

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 45.72  E-value: 1.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 432 PGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPkptvtASPTPKPTVTASP--TPKPTVTASPTPKPTVTASPTPKPTV 509
Cdd:PHA03291  172 LAAPPLGEGSADGSCDPALPLSAPRLGPADVFVP-----ATPRPTPRTTASPetTPTPSTTTSPPSTTIPAPSTTIAAPQ 246

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1071373367 510 TASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 542
Cdd:PHA03291  247 AGTTPEAEGTPAPPTPGGGEAPPANATPAPEAS 279
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 411-606 1.10e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 46.06  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLvptkTPAPSSTPKpTATASPTPKPTVTASPTPKPTVTASPTPKPTVT 490
Cdd:pfam05109 652 SETLSPSTSDNSTSHMPLLTSAHPTGGENITQV----TPASTSTHH-VSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNV 726

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 491 ASPTPKPTVTASPTPkptvTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPT 570
Cdd:pfam05109 727 TKGTPPKNATSPQAP----SGQKTAVPTVTSTGGKANSTTGGKHTTGHGARTSTEPTTDYGGDSTTPRTRYNATTYLPPS 802

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1071373367 571 ATAGVTP--SPTAGTITRALASGEAGPLAMPNGLALSL 606
Cdd:pfam05109 803 TSSKLRPrwTFTSPPVTTAQATVPVPPTSQPRFSNLSM 840
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 409-546 1.11e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 46.22  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 409 RFANTLTPTIPTPSLTPTPFPTMPGEPGVspvpslvPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPT 488
Cdd:PTZ00449  685 KSKETKTTVVLDESFESILKETLPETPGT-------PFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEER 757

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 489 V----TASPTPKPTVTASPTPKPTVTASpTPKPTvtaSPTPKPTVTASPTPKPTVTASPTPK 546
Cdd:PTZ00449  758 TffheTPADTPLPDILAEEFKEEDIHAE-TGEPD---EAMKRPDSPSEHEDKPPGDHPSLPK 815
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
429-545 1.16e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 45.92  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 429 PTMPGEPGVS-PVPSLVPTKTPAPSSTPKPTATA--SPTPKPTVTASPTPKPTVTASPTPKPTVtasptpkPTVTASPTP 505
Cdd:PRK14971  375 PKQHIKPVFTqPAAAPQPSAAAAASPSPSQSSAAaqPSAPQSATQPAGTPPTVSVDPPAAVPVN-------PPSTAPQAV 447

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1071373367 506 KPTVTASPTPKPTVTAS----PTPKPTVTASPTPKPTVTASPTP 545
Cdd:PRK14971  448 RPAQFKEEKKIPVSKVSslgpSTLRPIQEKAEQATGNIKEAPTG 491
PRK04654 PRK04654
sec-independent translocase; Provisional
 446-549 1.18e-04

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 44.42  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 446 TKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVT-ASP-TPKPTVTASPTPKPTVTASPTpkpTVTASP 523
Cdd:PRK04654  106 TPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAqAQPiAPAPHQTLVPAPHDTIVPAPH---AAHLPS 182

                          90       100
                  ....*....|....*....|....*.
gi 1071373367 524 TPKPTVTASPTPKPTvTASPTPKPTA 549
Cdd:PRK04654  183 APATPVSVAPVDAGT-SASPTPSEPT 207
PHA03369 PHA03369
capsid maturational protease; Provisional
 453-544 1.21e-04

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 45.76  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 453 STPKPTATASPTPKPTVTASPTPkPTVTASPTPKPTVTASPTPKPTvTASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 532
Cdd:PHA03369  352 SLTAPSRVLAAAAKVAVIAAPQT-HTGPADRQRPQRPDGIPYSVPA-RSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYG 429

                          90
                  ....*....|..
gi 1071373367 533 PTPKPTVTASPT 544
Cdd:PHA03369  430 PEPVGPVPPQPT 441
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
497-582 1.22e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 46.00  E-value: 1.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 497 PTVTASPTpKPTVTASPTPKPTVTASPTPkptVTASPTPKPTVTASPTPkPTATARPSVTPTVTPTASPTVR-PTATAGV 575
Cdd:PRK11907   30 EIVTTTPA-TSTEAEQTTPVESDATEEAD---NTETPVAATTAAEAPSS-SETAETSDPTSEATDTTTSEARtVTPAATE 104


                  ....*..
gi 1071373367 576 TPSPTAG 582
Cdd:PRK11907  105 TSKPVEG 111
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
487-569 1.24e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 46.00  E-value: 1.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 487 PTVTASPTpKPTVTASPTPKPTVTASPTPkptVTASPTPKPTVTASPTPkPTVTASPTPKPTAT-ARPSVTPTVTPTASP 565
Cdd:PRK11907   30 EIVTTTPA-TSTEAEQTTPVESDATEEAD---NTETPVAATTAAEAPSS-SETAETSDPTSEATdTTTSEARTVTPAATE 104


                  ....
gi 1071373367 566 TVRP 569
Cdd:PRK11907  105 TSKP 108
PRK04654 PRK04654
sec-independent translocase; Provisional
 422-535 1.31e-04

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 44.03  E-value: 1.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 422 SLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTpkpTVTA 501
Cdd:PRK04654  104 SATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPH---AAHL 180

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1071373367 502 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP 535
Cdd:PRK04654  181 PSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 439-548 1.35e-04

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 42.73  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 439 PVPSLVPTKTPAPSSTPKPTATAspTPKPTVTASPTPKPTVTASP----TPKPTVTASPTPKPTVTASP----TPKPTVT 510
Cdd:pfam02389  14 QEPCVPTTKEPCHSKVPEPCNPK--VPEPCCPKVPEPCCPKVPEPccpkVPEPCCPKVPEPCYPKVPEPcspkVPEPCHP 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1071373367 511 ASP------TPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPT 548
Cdd:pfam02389  92 KAPepchpkVPEPCYPKAPEPCQPKVPEPCP-STVTPGPAQQKT 134
PRK11901 PRK11901
hypothetical protein; Reviewed
 430-503 1.37e-04

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 45.06  E-value: 1.37e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 430 TMPGEPgvSPVPSLVPTKTPAPSSTPKPTATASPTPKPTvtASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 503
Cdd:PRK11901  173 TLPTAP--ATVAPSKGAKVPATAETHPTPPQKPATKKPA--VNHHKTATVAVPPATSGKPKSGAASARALSSAP 242
PHA03247 PHA03247
large tegument protein UL36; Provisional
 425-601 1.37e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.08  E-value: 1.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  425 PTPFPTMPGEPGVSPVPslvPTKTPAPSSTPKPTATASPTPKP------TVTASPTPKPTVTASPTPKPTVTA------- 491
Cdd:PHA03247   255 PAPPPVVGEGADRAPET---ARGATGPPPPPEAAAPNGAAAPPdgvwgaALAGAPLALPAPPDPPPPAPAGDAeeedded 331

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  492 ------SPTPKPTVTAS--------PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKptvTASPTPKPTATARPSVTP 557
Cdd:PHA03247   332 gamevvSPLPRPRQHYPlgfpkrrrPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARH---AATPFARGPGGDDQTRPA 408

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1071373367  558 TVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMPNG 601
Cdd:PHA03247   409 APVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPER 452
PRK11901 PRK11901
hypothetical protein; Reviewed
 430-554 1.43e-04

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 45.06  E-value: 1.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 430 TMPGEPGVSPVPSlVPTKTPAPSSTPKPTATASPTPKPTVTASPT---PKPT-----------------------VTASP 483
Cdd:PRK11901   86 SLSSGNQSSPSAA-NNTSDGHDASGVKNTAPPQDISAPPISPTPTqaaPPQTpngqqrielpgnisdalsqqqgqVNAAS 164

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 484 TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPS 554
Cdd:PRK11901  165 QNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASA 235
PRK10856 PRK10856
cytoskeleton protein RodZ;
452-534 1.55e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 45.02  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 452 SSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTA 531
Cdd:PRK10856  167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVST 246


                  ...
gi 1071373367 532 SPT 534
Cdd:PRK10856  247 PAA 249
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 437-513 1.64e-04

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 45.09  E-value: 1.64e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 437 VSPVPSLVPTKTPAPSSTPKPtaTASPTPKPTVTASPTPKPTVTASPTPKPTVtaSPTPKPTVTASPTPKPTVTASP 513
Cdd:pfam05616 324 VIPRPDLTPASAEAPHAQPLP--EVSPAENPANNPDPDENPGTRPNPEPDPDL--NPDANPDTDGQPGTRPDSPAVP 396
rne PRK10811
ribonuclease E; Reviewed
 432-586 1.67e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 45.42  E-value: 1.67e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  432 PGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTP--KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTV 509
Cdd:PRK10811   861 AEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVveEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQ 940

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367  510 TASPTPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPTATArpsvtPTVTPTASPTVRPTATAGVTPSPTAGTITR 586
Cdd:PRK10811   941 EVAEHAEPVVEPQDETADIEEAAETA-EVVVAEPEVVAQPAA-----PVVAEVAAEVETVTAVEPEVAPAQVPEATV 1011
PRK10856 PRK10856
cytoskeleton protein RodZ;
468-550 1.67e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 44.63  E-value: 1.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 468 TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP 547
Cdd:PRK10856  169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPA 248


                  ...
gi 1071373367 548 TAT 550
Cdd:PRK10856  249 ADP 251
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 431-510 1.73e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.89  E-value: 1.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 431 MPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPtvtaSPTPKPTVT-ASPTPKPTVTASPTPKPTVTASPTPKPTV 509
Cdd:TIGR00601  73 MVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGM----SAAPASAVEeKSPSEESATATAPESPSTSVPSSGSDAAS 148


                  .
gi 1071373367 510 T 510
Cdd:TIGR00601 149 T 149
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 502-592 1.76e-04

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 44.44  E-value: 1.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 502 SPTPKPTVTASPtPKPTVTASPTPKPTVTASPTPKPtvtaSPTPKPtatarPSVTPTVTPTAS-PTVRptatagvtpSPT 580
Cdd:PLN02983  144 PPPPAPVVMMQP-PPPHAMPPASPPAAQPAPSAPAS----SPPPTP-----ASPPPAKAPKSShPPLK---------SPM 204

                          90
                  ....*....|..
gi 1071373367 581 AGTITRALASGE 592
Cdd:PLN02983  205 AGTFYRSPAPGE 216
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
442-557 1.92e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 44.73  E-value: 1.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 442 SLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPtPKPTVTASPTPKPTVTASPTPKpTVTASPTPKPTVTA 521
Cdd:PRK13335   57 GANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQP-KQEEQKSLNISATPAPKQEQSQ-TTTESTTPKTKVTT 134

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1071373367 522 SPTpkptvTASPTP-KPTVTASPTPKPTATARPSVTP 557
Cdd:PRK13335  135 PPS-----TNTPQPmQSTKSDTPQSPTIKQAQTDMTP 166
SPESP1 pfam15754
Sperm equatorial segment protein 1;
446-532 2.08e-04

Sperm equatorial segment protein 1;


Pssm-ID: 464848 [Multi-domain]  Cd Length: 322  Bit Score: 44.45  E-value: 2.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 446 TKTPAPSSTPKP--------TATASPTPKPT----VTASPTP---KPTVTASPTPKPTVTASPTPKPTVTASP-TPKPTV 509
Cdd:pfam15754  78 ETTPFPTFGFTLerkkrkktESTAFWSIKPNnvsiVLHTEEPyieKPEPEPEPEPEPEPEPTSKTFSRVTDFPrRSAPTV 157

                          90       100
                  ....*....|....*....|...
gi 1071373367 510 TaSPTPKPTVTASPTPKPTVTAS 532
Cdd:pfam15754 158 T-SPPPATTTLSTSTDEDTSTES 179
PHA03377 PHA03377
EBNA-3C; Provisional
 430-580 2.11e-04

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 45.04  E-value: 2.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  430 TMPGEPGVSPVPSlVPTKTPAPSSTPKPTATASPTPK--PTVTASPTPKP------------------------------ 477
Cdd:PHA03377   448 STPERPGPSDQPS-VPVEPAHLTPVEHTTVILHQPPQspPTVAIKPAPPPsrrrrgacvvydddiievidvetteeeesv 526

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  478 TVTASPTPKPTVTASPTPKPTVTASPTP-KPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVT 556
Cdd:PHA03377   527 TQPAKPHRKVQDGFQRSGRRQKRATPPKvSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDG 606

                          170       180
                   ....*....|....*....|....*
gi 1071373367  557 PtvtPTASP-TVRPTATAGVTPSPT 580
Cdd:PHA03377   607 P---PASGPhEKQPPSSAPRDMAPS 628
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 413-528 2.27e-04

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 44.77  E-value: 2.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 413 TLTPTIPTPSLTPTPfPTMPGEPgvSPVPSLVPTKTPAPSSTPKPTAT-ASPTPKPTVtasPTPKPTVTASPTPKptvTA 491
Cdd:pfam13254 229 DSSPTKEEPSEEADT-LSTDKEQ--SPAPTSASEPPPKTKELPKDSEEpAAPSKSAEA---STEKKEPDTESSPE---TS 299

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1071373367 492 SPTPKPTVTaSPTPKPTVTASPTPKPTVTASPTPKPT 528
Cdd:pfam13254 300 SEKSAPSLL-SPVSKASIDKPLSSPDRDPLSPKPKPQ 335
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 435-570 2.27e-04

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 44.77  E-value: 2.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 435 PGVSPVPSLVPTKTPAPSSTPKPTATASPT-PKPTVTASP-----TPKPTVTASPTPKPtvtASPTPKPTVTASPTPKPT 508
Cdd:pfam13254 204 TPVGLMRSPAPGGHSKSPSVSGISADSSPTkEEPSEEADTlstdkEQSPAPTSASEPPP---KTKELPKDSEEPAAPSKS 280

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 509 VTASPTPKPTVTASPTPKPTVTASPTPkptvtASPTPKPTATARPSVTPTVTPTASPTVRPT 570
Cdd:pfam13254 281 AEASTEKKEPDTESSPETSSEKSAPSL-----LSPVSKASIDKPLSSPDRDPLSPKPKPQSP 337
Nsp2_AV pfam14755
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, ...
 439-507 2.67e-04

Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV, which is a tetraspanning transmembrane protein. This domain resides adjacent to the peptidase C33 catalytic domain of Nsp2.


Pssm-ID: 373271 [Multi-domain]  Cd Length: 148  Bit Score: 42.28  E-value: 2.67e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 439 PVPSLVPTKTPAPSSTPKPTATASPTPKPTvTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP 507
Cdd:pfam14755  35 PVPAPRTRPSASSSGDVKDPATVPPVPKPR-TKLAKPSPTQAPTPAPRTRLQDASKQEPPVGTAAAPAS 102
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
441-515 2.77e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 44.57  E-value: 2.77e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367 441 PSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTA-SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP 515
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAtTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAP 436
PRK11633 PRK11633
cell division protein DedD; Provisional
 485-580 2.90e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.07  E-value: 2.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 485 PKPTVTASPTPKPTVTAS-PTPKP-----TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPT 558
Cdd:PRK11633   45 PKPGDRDEPDMMPAATQAlPTQPPegaaeAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQK 124

                          90       100
                  ....*....|....*....|..
gi 1071373367 559 VTPTASPTVRPTATAGVTPSPT 580
Cdd:PRK11633  125 VEAPPAPKPEPKPVVEEKAAPT 146
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 440-566 3.04e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 44.67  E-value: 3.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 440 VPSLVPTKTPAPSS--TPKPTATASPTPKPTVTAS-PTP---KPTVTASPTPKPTVTASP-TPKPTvtASPTPK-PTVTA 511
Cdd:PRK14959  362 LPRLMPVESLRPSGggASAPSGSAAEGPASGGAATiPTPgtqGPQGTAPAAGMTPSSAAPaTPAPS--AAPSPRvPWDDA 439

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 512 SPTPkPTVTASPTPKPTV-TASPTP-KPTVTASPTPKPTATARPSVTPTVTPTASPT 566
Cdd:PRK14959  440 PPAP-PRSGIPPRPAPRMpEASPVPgAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
rplD PRK14907
50S ribosomal protein L4; Provisional
 446-532 3.13e-04

50S ribosomal protein L4; Provisional


Pssm-ID: 184900 [Multi-domain]  Cd Length: 295  Bit Score: 43.79  E-value: 3.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 446 TKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP 525
Cdd:PRK14907   10 KKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVS 89


                  ....*..
gi 1071373367 526 KPTVTAS 532
Cdd:PRK14907   90 AEVFEAS 96
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 412-508 3.29e-04

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 44.00  E-value: 3.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 412 NTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSlVPTKTPAPSSTPKPTATASPTPKPTVTASPTPkptvtASPTPKPTVTA 491
Cdd:pfam13254 245 STDKEQSPAPTSASEPPPKTKELPKDSEEPA-APSKSAEASTEKKEPDTESSPETSSEKSAPSL-----LSPVSKASIDK 318

                          90
                  ....*....|....*..
gi 1071373367 492 SPTPKPTVTASPTPKPT 508
Cdd:pfam13254 319 PLSSPDRDPLSPKPKPQ 335
PHA03379 PHA03379
EBNA-3A; Provisional
 416-587 3.31e-04

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 44.66  E-value: 3.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSStPKPTATAsPTPKPTVTASPTPKPTvtaspTPKPTVTASPTP 495
Cdd:PHA03379  488 VQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPVM-PQPMPVE-PVPVPTVALERPVCPA-----PPLIAMQGPGET 560

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 496 KPTVTASPTPKPtvtASPTPKPTVTASPTPKPTVTASPTPKptvtASPTPKPTATARPSVT--PTVTPTASPTVRPTATA 573
Cdd:PHA03379  561 SGIVRVRERWRP---APWTPNPPRSPSQMSVRDRLARLRAE----AQPYQASVEVQPPQLTqvSPQQPMEYPLEPEQQMF 633

                         170
                  ....*....|....
gi 1071373367 574 GVTPSPTAGTITRA 587
Cdd:PHA03379  634 PGSPFSQVADVMRA 647
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 447-516 3.33e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.90  E-value: 3.33e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 447 KTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTAS-PTPKPTVTASPTPKPTVTASPTPK 516
Cdd:PTZ00144  120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAaKPPEPAPAAKPPPTPVARADPRET 190
rne PRK10811
ribonuclease E; Reviewed
 463-595 3.37e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 44.65  E-value: 3.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  463 PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 542
Cdd:PRK10811   864 VQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVA 943

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  543 PTPKPTATARPSVTPTV-------TPTASPTVRPTATAGVTPSPTAGTITRALASGEAGP 595
Cdd:PRK10811   944 EHAEPVVEPQDETADIEeaaetaeVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP 1003
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 487-551 3.38e-04

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 41.68  E-value: 3.38e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367 487 PTVTASPTPKPTVTASptpKPTVTASPTPKpTVTASPTPKPTVT-ASPTPKPTVTASPTPKPTATA 551
Cdd:COG3147     1 PAEEAAAAPAAAAAPA---APAAAAAPAPA-AAAAAAAPKPAAKpAAPKPAAAAAAAPAAKAAAPA 62
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
452-567 3.39e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 44.46  E-value: 3.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 452 SSTPKPTATASPTPKPTVTASPTpkptVTASPTpKPTVTASPTPKPTVTASPTPkptVTASPTPKPTVTASPTPkPTVTA 531
Cdd:PRK11907    9 SAVALTLALLTASNPKLAQAEEI----VTTTPA-TSTEAEQTTPVESDATEEAD---NTETPVAATTAAEAPSS-SETAE 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1071373367 532 SPTPKPTVTASpTPKPTATARPSVTPTVTPTASPTV 567
Cdd:PRK11907   80 TSDPTSEATDT-TTSEARTVTPAATETSKPVEGQTV 114
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 449-574 3.40e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 43.79  E-value: 3.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 449 PAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKptVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT 528
Cdd:PTZ00436  229 PAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAK--AAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAP 306

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1071373367 529 VTASPTPKPtvTASPTPKPTATARPSVTPTVTPTASPTVRPTATAG 574
Cdd:PTZ00436  307 AKAAAAPAK--AAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVG 350
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
417-496 3.63e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.47  E-value: 3.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 417 TIPTPSLTPTPFPTMPGEPGVSPVPSlvpTKTPAPSstPKPTATASPTPKptvTASPTPKPTVTASPTPKPTVTASPTPK 496
Cdd:PRK13042   22 TTTTQAANATTPSSTKVEAPQSTPPS---TKVEAPQ--SKPNATTPPSTK---VEAPQQTPNATTPSSTKVETPQSPTTK 93
PRK04654 PRK04654
sec-independent translocase; Provisional
 442-545 3.74e-04

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 42.88  E-value: 3.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 442 SLVPTKTP--------APSSTPKPTATASPTPKPTVTASPTPKPTVT-ASP-TPKPTVTASPTPKPTVTASPTpkpTVTA 511
Cdd:PRK04654  104 SATPVATPlelahadlSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAqAQPiAPAPHQTLVPAPHDTIVPAPH---AAHL 180

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1071373367 512 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP 545
Cdd:PRK04654  181 PSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
PHA03247 PHA03247
large tegument protein UL36; Provisional
 415-517 3.91e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 3.91e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  415 TPTIPTPSLTPTPFPTMPgepgvSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPtvtaSPTPkPTVTASPT 494
Cdd:PHA03247   393 TPFARGPGGDDQTRPAAP-----VPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPP----ERQP-PAPATEPA 462

                           90       100
                   ....*....|....*....|...
gi 1071373367  495 PKPTVTASPTPKPTVTASPTPKP 517
Cdd:PHA03247   463 PDDPDDATRKALDALRERRPPEP 485
PHA01929 PHA01929
putative scaffolding protein
 451-575 3.96e-04

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 43.51  E-value: 3.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 451 PSSTPKPTATASPTPKPTvtasPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPkptvT 530
Cdd:PHA01929    9 PPGLAGLVANVPPAAAPT----PQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAP----A 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1071373367 531 ASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGV 575
Cdd:PHA01929   81 APPAAGAALPEALEVPPPPAFTPNGEIVGTLAGNLEGDPQLAPSV 125
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 447-572 4.05e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 44.31  E-value: 4.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 447 KTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPK 526
Cdd:PRK08691  378 QSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSI 457

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1071373367 527 PTVTASPTPKPTVTASPTPKPTATARP-SVTPTVTPT-ASPTVRPTAT 572
Cdd:PRK08691  458 QTASEAETPPENQVSKNKAADNETDAPlSEVPSENPIqATPNDEAVET 505
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 427-510 4.13e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 4.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  427 PFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPtvtASPTPK 506
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP---AAAAVE 114


                   ....
gi 1071373367  507 PTVT 510
Cdd:PRK12270   115 DEVT 118
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 415-590 4.16e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 4.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 494
Cdd:PHA03307   129 SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR 208

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  495 PKPTVTA---SPTPKPTVTA------------------------SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP 547
Cdd:PHA03307   209 RSSPISAsasSPAPAPGRSAaddagasssdssssessgcgwgpeNECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSS 288

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367  548 TATA--RPSVTPTVTPTASPTVRPTAT----------------AGVTPSPTAGTITRALAS 590
Cdd:PHA03307   289 SSPRerSPSPSPSSPGSGPAPSSPRASssssssressssstssSSESSRGAAVSPGPSPSR 349
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
474-575 4.34e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.00  E-value: 4.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 474 TPKPTVTASPTPKPTVTAS-PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTvtASPTPkPTATAR 552
Cdd:PRK14971  368 DASGGRGPKQHIKPVFTQPaAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPA--AVPVN-PPSTAP 444

                          90       100
                  ....*....|....*....|...
gi 1071373367 553 PSVTPTVtptaSPTVRPTATAGV 575
Cdd:PRK14971  445 QAVRPAQ----FKEEKKIPVSKV 463
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
405-579 4.36e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 43.80  E-value: 4.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 405 LLYNRFANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSlVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPT 484
Cdd:PRK14948  359 LLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPK-TKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPP 437

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 485 PK------PTVTASPTPKPT---------------------------------------------------------VTA 501
Cdd:PRK14948  438 SLnleelwQQILAKLELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnlesqsGSA 517

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 502 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPtPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSP 579
Cdd:PRK14948  518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPP-PTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 502-589 4.39e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 4.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  502 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTA 581
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116


                   ....*...
gi 1071373367  582 GTITRALA 589
Cdd:PRK12270   117 VTPLRGAA 124
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 419-494 4.45e-04

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 41.26  E-value: 4.45e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367 419 PTPSLTPTPFPTMPGEPgVSPVPSlVPTKTPAPSstPKPtatASPTPKPTVTASPTPKPtVTASPTPKPTVTASPT 494
Cdd:pfam05104  73 PSAALEPEPVPTPVPAP-VEPEPA-PPSESPAPS--PKE---KKKKEKKSAKVEPAETP-EAVQPKPALEKEEPPA 140
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 410-522 4.71e-04

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 43.40  E-value: 4.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 410 FANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSStPKPTATASP--TPKPTVTASPTPKPTVTASPTPKP 487
Cdd:PHA03291  166 FPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPR-PTPRTTASPetTPTPSTTTSPPSTTIPAPSTTIAA 244

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1071373367 488 TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 522
Cdd:PHA03291  245 PQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEAS 279
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 434-594 4.83e-04

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 43.90  E-value: 4.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 434 EPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPT---VTASPTPKPTVTASPTPKPTVT 510
Cdd:COG5180   225 RPEAASSPKVDPPSTSEARSRPATVDAQPEMRPPADAKERRRAAIGDTPAAEPPGlpvLEAGSEPQSDAPEAETARPIDV 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 511 ASPTPKPTVTASPTPKPTVTASPTPKPT-VTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALA 589
Cdd:COG5180   305 KGVASAPPATRPVRPPGGARDPGTPRPGqPTERPAGVPEAASDAGQPPSAYPPAEEAVPGKPLEQGAPRPGSSGGDGAPF 384


                  ....*
gi 1071373367 590 SGEAG 594
Cdd:COG5180   385 QPPNG 389
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 457-529 5.25e-04

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 41.30  E-value: 5.25e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1071373367 457 PTATASPTPKPTVTASptpKPTVTASPTPKpTVTASPTPKPTVTASPtPKPTVTASPTPKPTVTASPTPKPTV 529
Cdd:COG3147     1 PAEEAAAAPAAAAAPA---APAAAAAPAPA-AAAAAAAPKPAAKPAA-PKPAAAAAAAPAAKAAAPAGGGWVV 68
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 448-604 5.75e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 43.54  E-value: 5.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 448 TPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTpkpTVTASPTPKP 527
Cdd:PRK08691  359 APLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPV---SNQENNDVPP 435

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 528 TVTAsptPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTitralaSGEAGPLAMPNGLAL 604
Cdd:PRK08691  436 WEDA---PDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEV------PSENPIQATPNDEAV 503
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 467-539 5.89e-04

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 40.91  E-value: 5.89e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1071373367 467 PTVTASPTPKPTVTASptpKPTVTASPTPKpTVTASPTPKPTVTASPtPKPTVTASPTPKPTVTASPTPKPTV 539
Cdd:COG3147     1 PAEEAAAAPAAAAAPA---APAAAAAPAPA-AAAAAAAPKPAAKPAA-PKPAAAAAAAPAAKAAAPAGGGWVV 68
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 421-565 5.95e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 43.01  E-value: 5.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 421 PSLTPTPFPTMPGEPGVSPVPSLVPtktPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPtpkPTVTASPTPKPTVT 500
Cdd:PTZ00436  211 PSGKKSAKAAAPAKAAAAPAKAAAP---PAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAP---PAKAAAPPAKAAAP 284

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 501 ASPTPKPTVTASPTPKPTvTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASP 565
Cdd:PTZ00436  285 PAKAAAPPAKAAAAPAKA-AAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAP 348
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 411-485 5.95e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.73  E-value: 5.95e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367  411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTP 485
Cdd:PRK12270    40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVE 114
Orthopox_A5L pfam06193
Orthopoxvirus A5L protein-like; This family includes several Orthopoxvirus A5L proteins. The ...
 506-584 5.97e-04

Orthopoxvirus A5L protein-like; This family includes several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion.


Pssm-ID: 283778 [Multi-domain]  Cd Length: 216  Bit Score: 42.27  E-value: 5.97e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 506 KPTVTASPTPKPTVTASPTPKPTvtasPTPKPTVTASPTPKPTATARPSVTpTVTPTASPTVRPTATAGVTPSPTAGTI 584
Cdd:pfam06193  69 QPIQPLQPTIHITPIEIPTPAPT----PKPRQQELGTPSTSCTQNSDASIA-CSTDIVTPPQPPIVATVCTPTPTDGRI 142
PRK10856 PRK10856
cytoskeleton protein RodZ;
434-510 6.13e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 43.09  E-value: 6.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 434 EPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPT-VTASPTPKPTVTASPT---PKPTVTASPTPKPTV 509
Cdd:PRK10856  171 DPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAnVDTAATPAPAAPATPDgaaPLPTDQAGVSTPAAD 250


                  .
gi 1071373367 510 T 510
Cdd:PRK10856  251 P 251
PHA01929 PHA01929
putative scaffolding protein
 398-529 6.20e-04

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 42.73  E-value: 6.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 398 NGQTTGLLLYNRFANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSstPKPTATASPTPKPTVTASPTPkp 477
Cdd:PHA01929    4 NEQQLPPGLAGLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQ--PVPTSAMTPHVVQQAPAQPAP-- 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 478 tvTASPTPKPTVTASPTPKPtvtaSPTPKPTVTASPTPKPTVTASPTPKPTV 529
Cdd:PHA01929   80 --AAPPAAGAALPEALEVPP----PPAFTPNGEIVGTLAGNLEGDPQLAPSV 125
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 445-583 6.40e-04

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 43.23  E-value: 6.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 445 PTKTPAPSSTPKPTATASPTPKPTVTASP---TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTvtaspTPKPTVTA 521
Cdd:pfam13254 199 SFKEVTPVGLMRSPAPGGHSKSPSVSGISadsSPTKEEPSEEADTLSTDKEQSPAPTSASEPPPKTK-----ELPKDSEE 273

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1071373367 522 SPTPKPTVTASPTPK-PTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGT 583
Cdd:pfam13254 274 PAAPSKSAEASTEKKePDTESSPETSSEKSAPSLLSPVSKASIDKPLSSPDRDPLSPKPKPQS 336
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 447-579 6.72e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 43.01  E-value: 6.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 447 KTPAPS--STPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 524
Cdd:PTZ00436  207 KAAAPSgkKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA 286

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 525 PKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSP 579
Cdd:PTZ00436  287 KAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPP 341
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 481-601 7.29e-04

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 42.91  E-value: 7.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 481 ASPTPKPTVTASPTPKptvTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTAtarpsvtPTVT 560
Cdd:COG3266   261 ASSASAPATTSLGEQQ---EVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAAK-------PVVT 330

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1071373367 561 PTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMPNG 601
Cdd:COG3266   331 ETAAPAAPAPEAAAAAAAPAAPAVAKKLAADEQWLASQPAS 371
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 497-567 7.55e-04

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 40.53  E-value: 7.55e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 497 PTVTASPTPKPTVTASptpKPTVTASPTPKpTVTASPTPKPTVT-ASPTPKPTATARPSVTPTVTPTASPTV 567
Cdd:COG3147     1 PAEEAAAAPAAAAAPA---APAAAAAPAPA-AAAAAAAPKPAAKpAAPKPAAAAAAAPAAKAAAPAGGGWVV 68
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 478-590 7.86e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 43.37  E-value: 7.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 478 TVTASPTPKPTVTASPTPKPTVTAsptpkPTVTASPTPKPTVTA---SPTPKPT-VTASPTPKPTVT----ASPTPKPTA 549
Cdd:pfam05109 408 TATNATTTTHKVIFSKAPESTTTS-----PTLNTTGFAAPNTTTglpSSTHVPTnLTAPASTGPTVStadvTSPTPAGTT 482

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1071373367 550 TARPSVTPTVTP------TASPTVRPTATAGVTPSPTAGTITRALAS 590
Cdd:pfam05109 483 SGASPVTPSPSPrdngteSKAPDMTSPTSAVTTPTPNATSPTPAVTT 529
rplD PRK14907
50S ribosomal protein L4; Provisional
 445-522 8.13e-04

50S ribosomal protein L4; Provisional


Pssm-ID: 184900 [Multi-domain]  Cd Length: 295  Bit Score: 42.24  E-value: 8.13e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 445 PTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 522
Cdd:PRK14907   19 AAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEAS 96
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 477-542 8.63e-04

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 40.53  E-value: 8.63e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 477 PTVTASPTPKPTVTASptpKPTVTASPTPKpTVTASPTPKPTVT-ASPTPKPTVTASPTPKPTVTAS 542
Cdd:COG3147     1 PAEEAAAAPAAAAAPA---APAAAAAPAPA-AAAAAAAPKPAAKpAAPKPAAAAAAAPAAKAAAPAG 63
motB PRK12799
flagellar motor protein MotB; Reviewed
 474-583 8.78e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 42.78  E-value: 8.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 474 TPKPTVTASPTPKPTVTASPTPKPTVTASPTPkptvTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARP 553
Cdd:PRK12799  295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSP----AVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAE 370

                          90       100       110
                  ....*....|....*....|....*....|
gi 1071373367 554 SVTPTVTPTASPTVRPTATAGVTPSPTAGT 583
Cdd:PRK12799  371 PVNMQPQPMSTTETQQSSTGNITSTANGPT 400
PRK10856 PRK10856
cytoskeleton protein RodZ;
457-540 9.09e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 42.32  E-value: 9.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 457 PTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASpTPKPTVTASPTPKPTVTASPTPKPTVTASpTPKPTVTASPTPK 536
Cdd:PRK10856  170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQ-QNAVVAPSQANVDTAATPAPAAPATPDGA-APLPTDQAGVSTP 247


                  ....
gi 1071373367 537 PTVT 540
Cdd:PRK10856  248 AADP 251
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
464-583 9.46e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 42.84  E-value: 9.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 464 TPKPTVTASPTPKPTVTAS-PTPKPTVTASPTPKPTVTASPTPkptvtaSPTPKPTVTASPTPKPTVTASPTPKPTVTAS 542
Cdd:PRK14971  368 DASGGRGPKQHIKPVFTQPaAAPQPSAAAAASPSPSQSSAAAQ------PSAPQSATQPAGTPPTVSVDPPAAVPVNPPS 441

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1071373367 543 PTP--------KPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGT 583
Cdd:PRK14971  442 TAPqavrpaqfKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPT 490
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
462-545 9.69e-04

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 42.76  E-value: 9.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 462 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKptvTASPTPKPTVTASPTpkpTVTA 541
Cdd:PRK06347   56 APADEASKSAEANTTKEAPATATPENTTEPTVEPKQTETKEQTKTPEEKQPAAKQ---VEKAPAEPATVSNPD---NATS 129


                  ....
gi 1071373367 542 SPTP 545
Cdd:PRK06347  130 SSTP 133
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 441-509 9.86e-04

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 40.14  E-value: 9.86e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 441 PSLVPTKTPAPSSTP-KPTATASPTPKpTVTASPTPKPTVTASPtPKPTVTASPTPKPTVTASPTPKPTV 509
Cdd:COG3147     1 PAEEAAAAPAAAAAPaAPAAAAAPAPA-AAAAAAAPKPAAKPAA-PKPAAAAAAAPAAKAAAPAGGGWVV 68
PHA03377 PHA03377
EBNA-3C; Provisional
 418-597 1.09e-03

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 42.73  E-value: 1.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  418 IPTPSLTPTPFPTMPGEPGVspvPSLVPT-----KTPAPSSTPKPTATASPTPKPTVTASPTP--KPTVTASPTPK--PT 488
Cdd:PHA03377   411 VPWRKPRTLPWPTPKTHPVK---RTLVKTsgrsdEAEQAQSTPERPGPSDQPSVPVEPAHLTPveHTTVILHQPPQspPT 487

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  489 VTASPTPKPT--------VTASPTPKPTVTASPTPKPTVTASPTP--KPTVTASPTPKPTVTASPTP-KPTATARPSVTP 557
Cdd:PHA03377   488 VAIKPAPPPSrrrrgacvVYDDDIIEVIDVETTEEEESVTQPAKPhrKVQDGFQRSGRRQKRATPPKvSPSDRGPPKASP 567

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1071373367  558 TVT--PTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLA 597
Cdd:PHA03377   568 PVMapPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPA 609
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 498-581 1.09e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 42.77  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 498 TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTAT--ARPSVTPT-----VTPTASPTVRPT 570
Cdd:PLN02217  572 TPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPAShlGSPSTTPSspessIKVASTETASPE 651

                          90
                  ....*....|.
gi 1071373367 571 ATAGVTPSPTA 581
Cdd:PLN02217  652 SSIKVASTESS 662
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 512-582 1.17e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 42.42  E-value: 1.17e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 512 SPTPKPTVTASPTPKPTVTASPTPKPTVTAsPTPKPTATARPSVTPTVTPTASPtvrPTATAGVTPSPTAG 582
Cdd:PRK14965  381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPP-AAPARPAAARPAPAPAPPAAAAP---PARSADPAAAASAG 447
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 414-560 1.18e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.68  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  414 LTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKpTATASPTPKPTVTASptpKPTVTASPTPKptVTASP 493
Cdd:TIGR00927  121 ITPTTPKNNYSPTAAGTERVKEDTPATPSRALNHYISTSGRQR-VKSYTPKPRGEVKSS---SPTQTREKVRK--YTPSP 194

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367  494 TPKPTVTASPTPKPTVTASP--TPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVT 560
Cdd:TIGR00927  195 LGRMVNSYAPSTFMTMPRSHgiTPRTTVKDSEITATYKMLETNPSKRTAGKTTPTPLKGMTDNTPTFLT 263
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 411-506 1.22e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 42.53  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPkptVTASPTPKPTvTASPTPKPTVT 490
Cdd:COG3266   268 ATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQP---TAAKPVVTET-AAPAAPAPEAA 343

                          90
                  ....*....|....*..
gi 1071373367 491 AS-PTPKPTVTASPTPK 506
Cdd:COG3266   344 AAaAAPAAPAVAKKLAA 360
PRK04654 PRK04654
sec-independent translocase; Provisional
 419-495 1.33e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 41.34  E-value: 1.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 419 PTPSLTPTPFPTMPGEPGVSPVP--SLVPtkTPAPSSTPKPTATASPT-PKPTVTASPTPKPTVTASPTPKPTVTASPTP 495
Cdd:PRK04654  137 QAHTPVPAPAPVIAQAQPIAPAPhqTLVP--APHDTIVPAPHAAHLPSaPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
PRK10856 PRK10856
cytoskeleton protein RodZ;
415-500 1.41e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 41.94  E-value: 1.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPA-PSSTPKPTATASPTPKPTVTASPTPKPTVTASpTPKPTVTASP 493
Cdd:PRK10856  166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAvDPQQNAVVAPSQANVDTAATPAPAAPATPDGA-APLPTDQAGV 244


                  ....*..
gi 1071373367 494 TPKPTVT 500
Cdd:PRK10856  245 STPAADP 251
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 447-585 1.41e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 42.40  E-value: 1.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 447 KTPAPSSTPK-PTATASPTPKPTVTASPTPKPTVTASPTPKPTVT-----ASPTPKPTVTA-SPTPK------------P 507
Cdd:PRK14949  637 KKSSADRKPKtPPSRAPPASLSKPASSPDASQTSASFDLDPDFELathqsVPEAALASGSApAPPPVpdpydrppweeaP 716

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 508 TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTP---KPTATARPSVTPTVTPTASPTVRPTATAGVTPSptaGTI 584
Cdd:PRK14949  717 EVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHqpqVQAEAQSPASTTALTQTSSEVQDTELNLVLLSS---GSI 793


                  .
gi 1071373367 585 T 585
Cdd:PRK14949  794 T 794
PRK10905 PRK10905
cell division protein DamX; Validated
 425-491 1.57e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 41.85  E-value: 1.57e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1071373367 425 PTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTA 491
Cdd:PRK10905  168 PQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTA 234
PRK10905 PRK10905
cell division protein DamX; Validated
 411-511 1.59e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 41.85  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 411 ANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTP-APSSTPKPTATASPTpkptvTASPTPKPTVTASPTPKPTV 489
Cdd:PRK10905  138 ASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPkPVAQTPKRTEPAAPV-----ASTKAPAATSTPAPKETATT 212

                          90       100
                  ....*....|....*....|..
gi 1071373367 490 TASPTPKPTVTASPTPKPTVTA 511
Cdd:PRK10905  213 APVQTASPAQTTATPAAGGKTA 234
PRK13733 PRK13733
conjugal transfer protein TraV; Provisional
 446-532 1.71e-03

conjugal transfer protein TraV; Provisional


Pssm-ID: 184285  Cd Length: 171  Bit Score: 40.15  E-value: 1.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 446 TKTPAPSSTPKPTATASPT-PKPTVTASPTP--KPTVTASPTPKPtvtasPTPKPTVTASPTPKpTVTASPTPKPTVTAS 522
Cdd:PRK13733   54 DAKPAAASLPRLAEGNFRTmPVQTVTATTPSgsRPAVTATPEQKL-----LAPRPLFTAAREVK-TVVPVSSVTPVTPPR 127

                          90
                  ....*....|
gi 1071373367 523 PTPKPTVTAS 532
Cdd:PRK13733  128 PLRTGEQTAR 137
PHA03369 PHA03369
capsid maturational protease; Provisional
 403-504 1.75e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 41.91  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 403 GLLLYNRFANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTAS 482
Cdd:PHA03369  340 GLKAHNEILKTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPY 419

                          90       100
                  ....*....|....*....|..
gi 1071373367 483 PTPKPTVTASPTPKPTVTASPT 504
Cdd:PHA03369  420 NPQSPGTSYGPEPVGPVPPQPT 441
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 432-499 1.76e-03

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 39.76  E-value: 1.76e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1071373367 432 PGEPGVSPVPSLVPTKTPAPSSTPKP-TATASPTPKPTVTASPtPKPTVTASPTPKPTVTASPTPKPTV 499
Cdd:COG3147     1 PAEEAAAAPAAAAAPAAPAAAAAPAPaAAAAAAAPKPAAKPAA-PKPAAAAAAAPAAKAAAPAGGGWVV 68
PHA03325 PHA03325
nuclear-egress-membrane-like protein; Provisional
 434-551 1.77e-03

nuclear-egress-membrane-like protein; Provisional


Pssm-ID: 223044  Cd Length: 418  Bit Score: 41.79  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 434 EPGVSPVPSLVPtktPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP 513
Cdd:PHA03325  301 HSDPEPLPASLP---PPPVRRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSF 377

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1071373367 514 TPKPTVTASPTPKPTVTASpTPKPTVTASPTPKPTATA 551
Cdd:PHA03325  378 LEDDDFGSPPLDLTTSLRH-MPSPSVTSAPEPPSIPLT 414
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
437-525 1.77e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 41.71  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 437 VSPVPSLVPTKTPAPSSTPKPTATASPTPKPtvtASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPK 516
Cdd:PRK12373  228 VPLLAPWQGDAAPVPPSEAARPKSADAETNA---ALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAK 304


                  ....*....
gi 1071373367 517 PTVTASPTP 525
Cdd:PRK12373  305 PALEDKPRP 313
PHA03369 PHA03369
capsid maturational protease; Provisional
 474-568 1.82e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 41.91  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 474 TPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARP 553
Cdd:PHA03369  353 LTAPSRVLAAAAKVAVIAAPQT-HTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPE 431

                          90
                  ....*....|....*.
gi 1071373367 554 SVTPTV-TPTASPTVR 568
Cdd:PHA03369  432 PVGPVPpQPTNPYVMP 447
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 439-509 1.88e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 42.04  E-value: 1.88e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 439 PVPSLVPTKTPAPSSTPKPTATASPTPkptvtasPTPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPTV 509
Cdd:PRK14965  384 PPSAAWGAPTPAAPAAPPPAAAPPVPP-------AAPARPAAARPAPAPAPPAAAAP-PARSADPAAAASA 446
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 433-533 1.88e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 41.97  E-value: 1.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 433 GEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTvtASPTPK-PTVTASPTPkPTVTASPTPKP----TVTASPTPKP 507
Cdd:PRK14959  392 GGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPS--AAPSPRvPWDDAPPAP-PRSGIPPRPAPrmpeASPVPGAPDS 468

                          90       100
                  ....*....|....*....|....*.
gi 1071373367 508 TVTASPTPkPTVTASPTPKPTVTASP 533
Cdd:PRK14959  469 VASASDAP-PTLGDPSDTAEHTPSGP 493
PHA03379 PHA03379
EBNA-3A; Provisional
 432-600 1.99e-03

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 41.97  E-value: 1.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 432 PGEPGVSPVPSLVPTKTPAPSSTPkptaTASPTPKPTVTASPTPKPTvTASPTPKPTVTASPTPKPTVTASPTpKPTVTA 511
Cdd:PHA03379  416 PRPPVEKPRPEVPQSLETATSHGS----AQVPEPPPVHDLEPGPLHD-QHSMAPCPVAQLPPGPLQDLEPGDQ-LPGVVQ 489

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 512 SPTPKPTvtasPTPKPT------VTASPTPKPTVTASP-TPKPTATArPSVTPTVTPTASPTVRPTATAGVTPSPTAGtI 584
Cdd:PHA03379  490 DGRPACA----PVPAPAgpivrpWEASLSQVPGVAFAPvMPQPMPVE-PVPVPTVALERPVCPAPPLIAMQGPGETSG-I 563

                         170
                  ....*....|....*.
gi 1071373367 585 TRALASGEAGPLAmPN 600
Cdd:PHA03379  564 VRVRERWRPAPWT-PN 578
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 401-602 2.05e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 41.90  E-value: 2.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  401 TTGLLLYNRFANTLTPTIPTP--SLTPT--PFPTMPGEPGVSPVP-SLVPTKTPAPSSTPKPTATASPTPKPTVTASPTP 475
Cdd:TIGR00927  230 TYKMLETNPSKRTAGKTTPTPlkGMTDNtpTFLTREVETDLLTSPrSVVEKNTLTTPRRVESNSSTNHWGLVGKNNLTTP 309

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  476 KPTVTaSPTPKPT---VTASptpkptVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATAR 552
Cdd:TIGR00927  310 QGTVL-EHTPATSegqVTIS------IMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIASATFRGLEKNPSTAPSTPAT 382

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1071373367  553 PSV--TPTVTPTASPTVRPTATAGVTPSPtagTITRALASGE--AGPLAMPNGL 602
Cdd:TIGR00927  383 PRVraVLTTQVHHCVVVKPAPAVPTTPSP---SLTTALFPEApsPSPSALPPGQ 433
PRK11901 PRK11901
hypothetical protein; Reviewed
 411-483 2.06e-03

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 41.21  E-value: 2.06e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1071373367 411 ANTLTPTIPTPSLT--PTPFPTMPGEPGVSPVPSLVPTKT-PAPSSTPKPTATASPTPKPTVTASPTPKPTVTASP 483
Cdd:PRK11901  167 AQGNTSTLPTAPATvaPSKGAKVPATAETHPTPPQKPATKkPAVNHHKTATVAVPPATSGKPKSGAASARALSSAP 242
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 443-608 2.10e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 41.00  E-value: 2.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 443 LVPTKTPAPSSTPKPTATAsPTPkptvtASPTPkPTVTASPTPKPTVTASP---TPKPTVTASPTPKPTVTASPTPKPTV 519
Cdd:PHA02682   16 LVLADTSSSLFTKCPQATI-PAP-----AAPCP-PDADVDPLDKYSVKEAGryyQSRLKANSACMQRPSGQSPLAPSPAC 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 520 tASPTPKPTVTASPTPKPTVTAsptPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEAGPLAMP 599
Cdd:PHA02682   89 -AAPAPACPACAPAAPAPAVTC---PAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKP 164


                  ....*....
gi 1071373367 600 NGLALSLNP 608
Cdd:PHA02682  165 IFLHNQLPP 173
PRK12495 PRK12495
hypothetical protein; Provisional
 446-560 2.22e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 40.62  E-value: 2.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 446 TKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPkptvtASPTPKP-TVTASPTPKPTVTASPTpKPTVTASPT 524
Cdd:PRK12495   85 TAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATD-----EAATDPPaTAAARDGPTPDPTAQPA-TPDERRSPR 158

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1071373367 525 PKPTVTASPtPKPTVTASPTPKPTATARPSVTPTVT 560
Cdd:PRK12495  159 QRPPVSGEP-PTPSTPDAHVAGTLQAARESLVETLA 193
PHA01929 PHA01929
putative scaffolding protein
 438-559 2.36e-03

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 41.19  E-value: 2.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 438 SPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP 517
Cdd:PHA01929    2 TQNEQQLPPGLAGLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAPAA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1071373367 518 TVTASPTPKPT--VTASPTPKPTVTASPTPKPTATARPSVTPTV 559
Cdd:PHA01929   82 PPAAGAALPEAleVPPPPAFTPNGEIVGTLAGNLEGDPQLAPSV 125
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 452-587 2.53e-03

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 41.31  E-value: 2.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 452 SSTPKPTATASP-TPKPTVTASPT-PKPTVTASPtpkPTVTASPTPKPTVTASPTPKPTvtaspTPKPTVTASPTPKPTV 529
Cdd:pfam13254 210 RSPAPGGHSKSPsVSGISADSSPTkEEPSEEADT---LSTDKEQSPAPTSASEPPPKTK-----ELPKDSEEPAAPSKSA 281

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 530 TASPTPKPTVTASPTPKPTATARPSVTptvtptaSPTVRPTATAGVTPSPTAGTITRA 587
Cdd:pfam13254 282 EASTEKKEPDTESSPETSSEKSAPSLL-------SPVSKASIDKPLSSPDRDPLSPKP 332
rplD PRK14907
50S ribosomal protein L4; Provisional
 486-602 2.56e-03

50S ribosomal protein L4; Provisional


Pssm-ID: 184900 [Multi-domain]  Cd Length: 295  Bit Score: 40.70  E-value: 2.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 486 KPTVTASPTPKPTVTASPTPKPTVTASptpkptvTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASP 565
Cdd:PRK14907    1 MAETKKTTKKKTTEEKKPAAKKATTSK-------ETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESV 73

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1071373367 566 TVRPTATAGVTPSPTAGTITRALASGEAGPLAMPNGL 602
Cdd:PRK14907   74 KKESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKKL 110
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 515-556 2.63e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 39.46  E-value: 2.63e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1071373367 515 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVT 556
Cdd:PRK05641   47 AVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVT 88
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
507-593 2.68e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 41.38  E-value: 2.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 507 PTVTASPTpKPTVTASPTPKPTVTASPTPkptVTASPTPKPTATARPS-VTPTVTPTASPTVRPTATAGVTPSPTAGTIT 585
Cdd:PRK11907   30 EIVTTTPA-TSTEAEQTTPVESDATEEAD---NTETPVAATTAAEAPSsSETAETSDPTSEATDTTTSEARTVTPAATET 105


                  ....*...
gi 1071373367 586 RALASGEA 593
Cdd:PRK11907  106 SKPVEGQT 113
motB PRK12799
flagellar motor protein MotB; Reviewed
 484-586 2.75e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 41.24  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 484 TPKPTVTASPTPKPTVTASPTPKPTVTASPTPkptvTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTA 563
Cdd:PRK12799  295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSP----AVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAE 370

                          90       100
                  ....*....|....*....|....
gi 1071373367 564 S-PTVRPTATAGVTPSPTAGTITR 586
Cdd:PRK12799  371 PvNMQPQPMSTTETQQSSTGNITS 394
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 465-581 2.84e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 40.91  E-value: 2.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 465 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASP---TPKPTVTASPTPKPTVTASPTPKPTVTA 541
Cdd:NF040712  195 PLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLAsarRRRAGVEQPEDEPVGPGAAPAAEPDEAT 274

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1071373367 542 SPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTA 581
Cdd:NF040712  275 RDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPA 314
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
444-553 3.03e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 40.94  E-value: 3.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 444 VPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKP--TVTASPTPKPTVTASPTPKPTVTASPTPKPTVTA 521
Cdd:PRK12373  210 KALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADaeTNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAE 289

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1071373367 522 SPTPKPTVTASPTPKPTVTASptPKPTATARP 553
Cdd:PRK12373  290 PAPKEAAKAAAAAAKPALEDK--PRPLGIARP 319
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 450-590 3.18e-03

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 41.01  E-value: 3.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 450 APSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTvTASPTPKPTV 529
Cdd:cd23959   111 RAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQSSASP-GEVASPFASG 189

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 530 TASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALAS 590
Cdd:cd23959   190 TVSASPFATATDTAPSSGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAATPTHACTI 250
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
446-526 3.27e-03

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 40.98  E-value: 3.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 446 TKTPAPSSTPKPTATASPT---PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTAS 522
Cdd:PRK09537   84 TKTFEDKTQVKVKVVSAPTkkkKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETL 163


                  ....
gi 1071373367 523 PTPK 526
Cdd:PRK09537  164 LSPK 167
Cuticle_3 pfam11018
Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties ...
 438-544 3.29e-03

Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties are optimized for biological function. The major components are the chitin filament system and the cuticular proteins, and the cuticle's properties are determined largely by the interactions between these two sets of molecules. The proteins can be ordered by species.


Pssm-ID: 431611 [Multi-domain]  Cd Length: 182  Bit Score: 39.75  E-value: 3.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 438 SPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP 517
Cdd:pfam11018  54 APAPVVTKSAYAAPAPVVTTYAHAAPAPVVAKTVYAAPAVVVYAAPAPVVAKTVTYAAPAVHYAAPAPVVAKTVYAAPAV 133

                          90       100
                  ....*....|....*....|....*..
gi 1071373367 518 TVTASPTPkptVTASPTPKPTVTASPT 544
Cdd:pfam11018 134 QHYAAPAP---VEAAAHAAPVVAAAPA 157
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 444-505 3.33e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 39.08  E-value: 3.33e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1071373367 444 VPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTvTASPTpkpTVTAsPTP 505
Cdd:PRK05641   36 VEAKGLGIDLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPA-SAGEN---VVTA-PMP 92
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 420-582 3.53e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 41.13  E-value: 3.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  420 TPSLTPTPFPTMPGEpgvspVPSLVPTktpAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTA-SPTPKPT 498
Cdd:TIGR00927  103 TPSIAMENTPSPPRR-----TAKITPT---TPKNNYSPTAAGTERVKEDTPATPSRALNHYISTSGRQRVKSyTPKPRGE 174

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  499 VTASptpKPTVTASPTPKptVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTATAGVTPS 578
Cdd:TIGR00927  175 VKSS---SPTQTREKVRK--YTPSPLGRMVNSYAPSTFMTMPRSHGITPRTTVKDSEITATYKMLETNPSKRTAGKTTPT 249


                   ....
gi 1071373367  579 PTAG 582
Cdd:TIGR00927  250 PLKG 253
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
504-647 3.65e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.91  E-value: 3.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 504 TPKPTVTASPTPKPTVT--ASPTPKPTVT-ASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPT---VRPTATAGVTP 577
Cdd:PRK14971  368 DASGGRGPKQHIKPVFTqpAAAPQPSAAAaASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAavpVNPPSTAPQAV 447

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1071373367 578 SPTAGTITRALASGEAGPLAMPnglalSLNPgdgggkdlggAQSSQAQLRPNVLLVDFTSK---FGIKHLQRY 647
Cdd:PRK14971  448 RPAQFKEEKKIPVSKVSSLGPS-----TLRP----------IQEKAEQATGNIKEAPTGTQkeiFTEEDLQYY 505
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
470-554 3.70e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 41.10  E-value: 3.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 470 TASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTvtASPTPKPTVTASPTPKPTVTASPTPKPTvtaSPTPKPTA 549
Cdd:PRK14948  516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPP--PPPTATQASSNAPAQIPADSSPPPPIPE---EPTPSPTK 590


                  ....*
gi 1071373367 550 TARPS 554
Cdd:PRK14948  591 DSSPE 595
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 442-495 3.95e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 38.69  E-value: 3.95e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 442 SLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTvTASPTpkpTVTAsPTP 495
Cdd:PRK05641   44 DLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPA-SAGEN---VVTA-PMP 92
PRK10118 PRK10118
flagellar hook length control protein FliK;
424-541 3.98e-03

flagellar hook length control protein FliK;


Pssm-ID: 236652 [Multi-domain]  Cd Length: 408  Bit Score: 40.62  E-value: 3.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 424 TPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPT-PKPTVTASPTPKPTVTASPTPKPTVTAS 502
Cdd:PRK10118  155 NTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTtAQPDDAPGTPAQPLTPLAAEAQAKAEVI 234

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1071373367 503 PTPKPtVTASPTPKPTvTASPTPKPTVTAsptpkPTVTA 541
Cdd:PRK10118  235 STPSP-VTAAASPTIT-PHQTQPLPTAAA-----PVLSA 266
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
413-605 4.09e-03

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 40.55  E-value: 4.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 413 TLTPTIPTPSLTPTPFPTMP---GEPGVSPVPSLVPTKTPA-----PSSTPKPTATASPTPKPTVTASPTPKPTVTASPT 484
Cdd:COG3170   108 AYAAAAAAPAAAPAPAPAAPaaaAAAADQPAAEAAPAASGEyypvrPGDTLWSIAARPVRPSSGVSLDQMMVALYRANPD 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 485 PKPTVTASPTPKPTVTASPTPK-----PTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTPTV 559
Cdd:COG3170   188 AFIDGNINRLKAGAVLRVPAAEevaalSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAPPAAAAAAGPVPAAA 267

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1071373367 560 TPTASPTV-RPTATAGVTPSPTAGTITRA-LASGEAGPLAMPNGLALS 605
Cdd:COG3170   268 EDTLSPEVtAAAAAEEADALPEAAAELAErLAALEAQLAELQRLLALK 315
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 410-497 4.11e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.03  E-value: 4.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  410 FANTLTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPtVTASPTPKPTV 489
Cdd:PRK12270    33 FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP-AAAAAAAPAAA 111


                   ....*...
gi 1071373367  490 TASPTPKP 497
Cdd:PRK12270   112 AVEDEVTP 119
PHA03369 PHA03369
capsid maturational protease; Provisional
 494-581 4.32e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 40.75  E-value: 4.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 494 TPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPTVTASPTPKPTvTASPTPKPTATARPSVTPTVTPT--ASPT--VRP 569
Cdd:PHA03369  353 LTAPSRVLAAAAKVAVIAAPQT-HTGPADRQRPQRPDGIPYSVPA-RSPMTAYPPVPQFCGDPGLVSPYnpQSPGtsYGP 430

                          90
                  ....*....|..
gi 1071373367 570 TATAGVTPSPTA 581
Cdd:PHA03369  431 EPVGPVPPQPTN 442
motB PRK12799
flagellar motor protein MotB; Reviewed
 415-526 4.38e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 40.47  E-value: 4.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 415 TPTIPTPSLTPTPfPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 494
Cdd:PRK12799  305 TPSSAVTQSSAIT-PSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTE 383

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1071373367 495 PKPTVTASPTP---KPTVTASPTPKPTVTASPTPK 526
Cdd:PRK12799  384 TQQSSTGNITStanGPTTSLPAAPASNIPVSPTSR 418
PHA03255 PHA03255
BDLF3; Provisional
 474-593 4.44e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 39.89  E-value: 4.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 474 TPKPTVTASPTPKPTVTASPTPKPTVTASPTPK-PTVTASPTPKPTVTASPTPKPTVTASPTPKPtvtasptPKPTATAR 552
Cdd:PHA03255   25 TSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQsTTLTTTSAPITTTAILSTNTTTVTSTGTTVT-------PVPTTSNA 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1071373367 553 PSVTPTVTPTASPTVRPTATAGVTPSPTAGTITRALASGEA 593
Cdd:PHA03255   98 STINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSA 138
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
416-515 4.68e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.53  E-value: 4.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 416 PTIPTPSLTPTPFPTMPGEPGVSPVPSlvPTKTPAPSSTPKPTATASPTP-KPTVTASPTPKPTVTASPTPKPTVTAS-- 492
Cdd:PRK14971  389 APQPSAAAAASPSPSQSSAAAQPSAPQ--SATQPAGTPPTVSVDPPAAVPvNPPSTAPQAVRPAQFKEEKKIPVSKVSsl 466

                          90       100
                  ....*....|....*....|....*
gi 1071373367 493 --PTPKPTVTASPTPKPTVTASPTP 515
Cdd:PRK14971  467 gpSTLRPIQEKAEQATGNIKEAPTG 491
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 450-579 4.71e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 40.75  E-value: 4.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367  450 APSSTPKPTATAS---PTPKPTVTASPTPKPTVTASP---TPKPTVTASPTPkPTVTASPTPK-PTVTASPTPK-PTVTA 521
Cdd:TIGR00927   52 AAVSSQQPIKLASrdlSNDEMMMVSSDPPKSSSEMEGemlAPQATVGRDEAT-PSIAMENTPSpPRRTAKITPTtPKNNY 130

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367  522 SPTPKPTVTASPTPKPTVTASPTPKPTATARPSVTpTVTPTASPTV---RPTATAG----VTPSP 579
Cdd:TIGR00927  131 SPTAAGTERVKEDTPATPSRALNHYISTSGRQRVK-SYTPKPRGEVkssSPTQTREkvrkYTPSP 194
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 502-545 4.77e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 38.69  E-value: 4.77e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1071373367 502 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP----TVTAsPTP 545
Cdd:PRK05641   46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASagenVVTA-PMP 92
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 492-535 4.77e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 38.69  E-value: 4.77e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1071373367 492 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP----TVTAsPTP 535
Cdd:PRK05641   46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASagenVVTA-PMP 92
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 482-525 4.77e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 38.69  E-value: 4.77e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1071373367 482 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP----TVTAsPTP 525
Cdd:PRK05641   46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASagenVVTA-PMP 92
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 472-515 4.77e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 38.69  E-value: 4.77e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1071373367 472 SPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKP----TVTAsPTP 515
Cdd:PRK05641   46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASagenVVTA-PMP 92
PRK13733 PRK13733
conjugal transfer protein TraV; Provisional
 447-559 4.93e-03

conjugal transfer protein TraV; Provisional


Pssm-ID: 184285  Cd Length: 171  Bit Score: 38.99  E-value: 4.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 447 KTPAPSSTPKPTATASPtpKPTVTASPTpkptvtaspTPKPTVTASPTP--KPTVTASPTPKPtvtasPTPKPTVTASPT 524
Cdd:PRK13733   47 KKLEQSSDAKPAAASLP--RLAEGNFRT---------MPVQTVTATTPSgsRPAVTATPEQKL-----LAPRPLFTAARE 110

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1071373367 525 PKpTVTASPTPKPTVTASPTPKPTATARPSVTPTV 559
Cdd:PRK13733  111 VK-TVVPVSSVTPVTPPRPLRTGEQTARLWIAPYI 144
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 472-539 5.42e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 40.50  E-value: 5.42e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 472 SPTPKPTVTASPTPKPTVTASPTPKPTVTAsPTPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPTV 539
Cdd:PRK14965  381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPP-AAPARPAAARPAPAPAPPAAAAP-PARSADPAAAASA 446
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 435-485 5.82e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 38.30  E-value: 5.82e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 435 PGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTvTASPTpkpTVTAsPTP 485
Cdd:PRK05641   47 AVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPA-SAGEN---VVTA-PMP 92
PRK10118 PRK10118
flagellar hook length control protein FliK;
493-596 7.22e-03

flagellar hook length control protein FliK;


Pssm-ID: 236652 [Multi-domain]  Cd Length: 408  Bit Score: 39.85  E-value: 7.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 493 PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT-PKPTATARPSVTPTVTPTASPTVRPTA 571
Cdd:PRK10118  154 DNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTtAQPDDAPGTPAQPLTPLAAEAQAKAEV 233

                          90       100
                  ....*....|....*....|....*
gi 1071373367 572 TAgvTPSPTAGTITRALASGEAGPL 596
Cdd:PRK10118  234 IS--TPSPVTAAASPTITPHQTQPL 256
motB PRK12799
flagellar motor protein MotB; Reviewed
 414-536 7.23e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 39.70  E-value: 7.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 414 LTPTIPTPSLTPTPFPTMPGEPGVSPVPSLVPTKTPAPSSTPKPTATASPTpkPTVTASPTPKPTVTASPTPKPTVTASP 493
Cdd:PRK12799  295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASA--VALSSAGVLPSDVTLPGTVALPAAEPV 372

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1071373367 494 TPKPTVTASPTPKPTVTASPTP---KPTVTASPTPKPTVTASPTPK 536
Cdd:PRK12799  373 NMQPQPMSTTETQQSSTGNITStanGPTTSLPAAPASNIPVSPTSR 418
PRK10118 PRK10118
flagellar hook length control protein FliK;
463-573 7.60e-03

flagellar hook length control protein FliK;


Pssm-ID: 236652 [Multi-domain]  Cd Length: 408  Bit Score: 39.85  E-value: 7.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 463 PTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT-PKPTVTASPTPKPTVTASPTPKPTVTA 541
Cdd:PRK10118  154 DNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTtAQPDDAPGTPAQPLTPLAAEAQAKAEV 233

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1071373367 542 SPTPKP-TATARPSVTPTVTPTASPTVRPTATA 573
Cdd:PRK10118  234 ISTPSPvTAAASPTITPHQTQPLPTAAAPVLSA 266
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 490-581 7.99e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.83  E-value: 7.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 490 TASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTvtasPTPKPTATARPSVTPTVTPTASPTVRP 569
Cdd:COG3266   255 LKAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPA----APAAAAAAAAPAEAAAPQPTAAKPVVT 330

                          90
                  ....*....|..
gi 1071373367 570 TATAGVTPSPTA 581
Cdd:COG3266   331 ETAAPAAPAPEA 342
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
 449-517 8.19e-03

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 39.14  E-value: 8.19e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071373367 449 PAPSSTPKPTATASPTPKPTVTA----SPTPKPTVTASPTPKPTvTASPTPKPTVTASP-TPKPTVTASPTPKP 517
Cdd:pfam07174  41 PEPAPPPPSTATAPPAPPPPPPApaapAPPPPPAAPNAPNAPPP-PADPNAPPPPPADPnAPPPPAVDPNAPEP 113
PRK10856 PRK10856
cytoskeleton protein RodZ;
435-514 8.23e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 39.24  E-value: 8.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 435 PGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT 514
Cdd:PRK10856  170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAA 249
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
 434-507 8.48e-03

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 39.14  E-value: 8.48e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1071373367 434 EPGVSPVPSLVPTKTPAPSSTPKPTATASPTPKPTVTASPTPKPTvTASPTPKPTVTASP-TPKPTVTASPTPKP 507
Cdd:pfam07174  40 DPEPAPPPPSTATAPPAPPPPPPAPAAPAPPPPPAAPNAPNAPPP-PADPNAPPPPPADPnAPPPPAVDPNAPEP 113
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 495-588 8.54e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 39.60  E-value: 8.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 495 PKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVtaSPTPKPTATARPSVTPT-VTPTASPTVRPTATA 573
Cdd:NF041121   17 RAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAP--LPAPYPGSLAPPPPPPPgPAGAAPGAALPVRVP 94

                          90
                  ....*....|....*
gi 1071373367 574 GVTPSPTAGTITRAL 588
Cdd:NF041121   95 APPALPNPLELARAL 109
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 478-593 9.19e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 39.56  E-value: 9.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 478 TVTASPTPKPTVTASPTPKPT-VTASPTPKPTVTASPTPKPTVTASPTPK-PTVTASPTPKPTVTASPTPKPTATARPSV 555
Cdd:pfam17823  64 TAAPAPVTLTKGTSAAHLNSTeVTAEHTPHGTDLSEPATREGAADGAASRaLAAAASSSPSSAAQSLPAAIAALPSEAFS 143

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1071373367 556 TPTV----TPTASPTVRPTATAGVTPSPTAGTITRALASGEA 593
Cdd:pfam17823 144 APRAaacrANASAAPRAAIAAASAPHAASPAPRTAASSTTAA 185
PHA03381 PHA03381
tegument protein VP22; Provisional
 449-571 9.21e-03

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 39.22  E-value: 9.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 449 PAPSSTPKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKptvtASPTPKPT 528
Cdd:PHA03381   66 EARADYPYYTGSSSEDERPADPRPSRRPHAQPEASGPGPARGARGPAGSRGRGRRAESPSPRDPPNPK----GASAPRGR 141

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1071373367 529 VTASPTPKPTVTASPTPKPTATARPSVTPTVTPTASPTVRPTA 571
Cdd:PHA03381  142 KSACADSAALLDAPAPAAPKRQKTPAGLARKLHFSTAPTSPTA 184
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
455-580 9.31e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 39.26  E-value: 9.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071373367 455 PKPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPTVTASPT-PKPTVTasPTPKPTVTASP 533
Cdd:pfam05539 169 KTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSnPEPQTE--PPPSQRGPSGS 246

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1071373367 534 TPKPTVTASPTPKPTATARPSvTPTVTPTASPTVRPTATAGVTPSPT 580
Cdd:pfam05539 247 PQHPPSTTSQDQSTTGDGQEH-TQRRKTPPATSNRRSPHSTATPPPT 292
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 456-525 9.38e-03

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 39.05  E-value: 9.38e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 456 KPTATASPTPKPTVTASPTPKPTVTASPTPKPTVTASPTPKPT-VTASPTPKPTVTASPTPKP-------TVTASPTP 525
Cdd:PLN02983  137 KKEALPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSpPPTPASPPPAKAPKSSHPPlkspmagTFYRSPAP 214
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 492-562 9.54e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 39.72  E-value: 9.54e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1071373367 492 SPTPKPTVTASPTPKPTVTASPTPKPTVTAsPTPKPTVTASPTPKPTVTASPTPkPTATARPSVTPTVTPT 562
Cdd:PRK14965  381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPP-AAPARPAAARPAPAPAPPAAAAP-PARSADPAAAASAGDR 449
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 452-519 9.62e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 39.72  E-value: 9.62e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1071373367 452 SSTPKPTATASPTPKPTVTASPTPKPTVTAsPTPKPTVTASPTPKPTVTASPTPkPTVTASPTPKPTV 519
Cdd:PRK14965  381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPP-AAPARPAAARPAPAPAPPAAAAP-PARSADPAAAASA 446
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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