NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1094708783|emb|SEQ06907|]
View 

Fibronectin type III domain-containing protein [Microlunatus flavus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NosD super family cl34609
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 989-1228 1.02e-16

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG3420:

Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 83.04  E-value: 1.02e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  989 AVSAAKAGTVIKLNPGTYGANIDVttvatpDKPLWICGPRTAVIDNADitKGYGFRVTgASNVVIAGMTVRNVQK----- 1063
Cdd:COG3420     27 AIDAAPPGDTIEVPPGTYEGNIVI------DKPLTLIGEGGAVIDGGG--KGTVITIT-ADNVTVRGLTITGSGDsltdd 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1064 --GVAVLYSKAVTVADLRVEKIGDeAIHLkNQTTDSTVIGNSISTTGLNSPNYGEGVYIGTAEGNWCLYN------DC-N 1134
Cdd:COG3420     98 daGIYVRGADNAVIENNRIENNLF-GIYL-EGSDNNVIRNNTISGNRDLRADRGNGIHLWNSPGNVIEGNtisggrDGiY 175

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1135 ADTSDRNLVAFNTISGttaepmeAKAGT----SNGTMWKNTldgaaiTSSDTDSLVQVMGS-GWVIAGNTGAHSPNDAIQ 1209
Cdd:COG3420    176 LEFSDNNVIRNNTIRN-------LRYGIhymySNDNLVEGN------TFRDNGAGIALMYSkGNTVRGNTILGNSGYGIL 242

                          250
                   ....*....|....*....
gi 1094708783 1210 VWNTTAGYGFDNIVYGNAV 1228
Cdd:COG3420    243 LKESSDSVIEGNTISGNGK 261
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 171-283 7.27e-14

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 77.29  E-value: 7.27e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPT-----ATPT 245
Cdd:PHA03247  2724 GPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESreslpSPWD 2803

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1094708783  246 ASATPTATPTASATPTASATPTASGTPTASATPTAAPK 283
Cdd:PHA03247  2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 53-334 2.74e-10

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 64.94  E-value: 2.74e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   53 TSTAISWTGTWSTATSTSDSDGSYATLNTdgnAQLTFTGTG------ITWNTRVNSYSGIADVYLDGVKKATVDLYSATS 126
Cdd:pfam05109  360 TDFKCKWTLTSGTPSGCENISGAFASNRT---FDITVSGLGtapktlIITRTATNATTTTHKVIFSKAPESTTTSPTLNT 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  127 KTKQAVYSVSGLTAGTHVlkivrtGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSA--TPTASASPTASATP 204
Cdd:pfam05109  437 TGFAAPNTTTGLPSSTHV------PTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPrdNGTESKAPDMTSPT 510

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  205 TASATPTASAT-PT-ASATPTASAT-PTASATPTASATPTATPTAS----ATPTATPTASATPTASATPTASGTptaSAT 277
Cdd:pfam05109  511 SAVTTPTPNATsPTpAVTTPTPNATsPTLGKTSPTSAVTTPTPNATsptpAVTTPTPNATIPTLGKTSPTSAVT---TPT 587

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1094708783  278 PTAAPKGVGQGTYENDDPAVTLNGTWTKVASNQDSGGSTGSLSTAGYAELSFTTSGI 334
Cdd:pfam05109  588 PNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSM 644
FN3 super family cl27307
Fibronectin type 3 domain [General function prediction only];
633-852 2.83e-10

Fibronectin type 3 domain [General function prediction only];


The actual alignment was detected with superfamily member COG3401:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 64.64  E-value: 2.83e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  633 VAPDIYPPAAPTAVTTT-PGRGTVTLAWAANTEPDVVGYRVYRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVTA 711
Cdd:COG3401    320 VTTDLTPPAAPSGLTATaVGSSSITLSWTASSDADVTGYNVYRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTA 399

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  712 LDKMGNESPVSAAVDATVPMKALPAGVYEDDDTDDVLLKGSWNKTASTGAGTDSGSSFSTLGDTGYAEVSFATSGIRWLA 791
Cdd:COG3401    400 VDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTA 479

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1094708783  792 RTNSTSGLADVYLDGVKVKTVDLYSSTTKFSQNVYEATGLSETGHTLRVVRTGNKNADSAG 852
Cdd:COG3401    480 TTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGA 540
COG4733 super family cl34810
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
362-710 9.45e-07

Phage-related protein, tail protein J [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG4733:

Pssm-ID: 443767 [Multi-domain]  Cd Length: 978  Bit Score: 53.41  E-value: 9.45e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  362 YSATTKTQQVAYEVTGLPETSHTIRiVRTGTKNASSSSPNIMLDAFVAPDIHAPLAPTGLTATVDGQDIDLAWAANAETD 441
Cdd:COG4733    578 WVSVPRTSGTSFEVPGIYAGDYEVR-VRAINALGVSSAWAASSETTVTGKTAPPPAPTGLTATGGLGGITLSWSFPVDAD 656

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  442 VKAYKVYRREGTSTTRTLIATTTADVRTFTDTARMPGATYGYDVVAVDTSDNASASSAAASATMPIDVQPA---GVYEDG 518
Cdd:COG4733    657 TLRTEIRYSTTGDWASATVAQALYPGNTYTLAGLKAGQTYYYRARAVDRSGNVSAWWVSGQASADAAGILDaitGQILET 736

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  519 DAAVTLYGPWSTVTSNMDSGGSYATLNAAGYAEVSFSTSGI----------RWISRLNSYSGIADVYLDGVKVKTVDLYS 588
Cdd:COG4733    737 ELGQELDAIIQNATVAEVVAATVTDVTAQIDTAVLFAGVATaaaigaearvAATVAESATAAAATGTAADAAGDASGGVT 816

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  589 STTKYQQVAYEVKGLPETTHTLRVVRTGTKNASSTSTAIVLDSFVAPDIYPPAAPTAVTTTPGrGTVTLAWAANTEPDVV 668
Cdd:COG4733    817 AGTSGTTGAGDTAASTTRVAAAVVLAGVVVYGDAIIESGNTGDIVATGDIASAAAGAVATTVS-GTTAADVSAVADSTAA 895

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|..
gi 1094708783  669 GYRVYRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVT 710
Cdd:COG4733    896 SLTAIVIAATTIIDAIGDGTTREPAGDIGASGGAQGFAVTIV 937
FN3 super family cl27307
Fibronectin type 3 domain [General function prediction only];
861-1023 1.66e-04

Fibronectin type 3 domain [General function prediction only];


The actual alignment was detected with superfamily member COG3401:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 45.76  E-value: 1.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  861 VAPDIYAPAAPTSVQASGI-RTGAKLTWTKSPDADVASYRIFRRATGTTTDVLVGTTdAATTSFANVGLADGGSYSWSVV 939
Cdd:COG3401    320 VTTDLTPPAAPSGLTATAVgSSSITLSWTASSDADVTGYNVYRSTSGGGTYTKIAET-VTTTSYTDTGLTPGTTYYYKVT 398

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  940 ARDTWGNDSAASLPASFTNGGDPYASFPQRYATCPTATVTVSTRAQLLTAVSAAKAGTVIKLNPGTYGANIDVTTVATPD 1019
Cdd:COG3401    399 AVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVT 478


                   ....
gi 1094708783 1020 KPLW 1023
Cdd:COG3401    479 ATTT 482
 
Name Accession Description Interval E-value
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 989-1228 1.02e-16

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 83.04  E-value: 1.02e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  989 AVSAAKAGTVIKLNPGTYGANIDVttvatpDKPLWICGPRTAVIDNADitKGYGFRVTgASNVVIAGMTVRNVQK----- 1063
Cdd:COG3420     27 AIDAAPPGDTIEVPPGTYEGNIVI------DKPLTLIGEGGAVIDGGG--KGTVITIT-ADNVTVRGLTITGSGDsltdd 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1064 --GVAVLYSKAVTVADLRVEKIGDeAIHLkNQTTDSTVIGNSISTTGLNSPNYGEGVYIGTAEGNWCLYN------DC-N 1134
Cdd:COG3420     98 daGIYVRGADNAVIENNRIENNLF-GIYL-EGSDNNVIRNNTISGNRDLRADRGNGIHLWNSPGNVIEGNtisggrDGiY 175

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1135 ADTSDRNLVAFNTISGttaepmeAKAGT----SNGTMWKNTldgaaiTSSDTDSLVQVMGS-GWVIAGNTGAHSPNDAIQ 1209
Cdd:COG3420    176 LEFSDNNVIRNNTIRN-------LRYGIhymySNDNLVEGN------TFRDNGAGIALMYSkGNTVRGNTILGNSGYGIL 242

                          250
                   ....*....|....*....
gi 1094708783 1210 VWNTTAGYGFDNIVYGNAV 1228
Cdd:COG3420    243 LKESSDSVIEGNTISGNGK 261
PHA03247 PHA03247
large tegument protein UL36; Provisional
 171-283 7.27e-14

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 77.29  E-value: 7.27e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPT-----ATPT 245
Cdd:PHA03247  2724 GPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESreslpSPWD 2803

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1094708783  246 ASATPTATPTASATPTASATPTASGTPTASATPTAAPK 283
Cdd:PHA03247  2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841
NosD_copper_fam TIGR04247
nitrous oxide reductase family maturation protein NosD; Members of this family include NosD, a ...
 986-1147 6.67e-13

nitrous oxide reductase family maturation protein NosD; Members of this family include NosD, a repetitive periplasmic protein required for the maturation of the copper-containing enzyme nitrous-oxide reductase. NosD appears to be part of a complex with NosF (an ABC transporter family ATP-binding protein) and NosY (a six-helix transmembrane protein in the ABC-2 permease family). However, NosDFY-like complexes appear to occur also in species whose copper requiring enzymes are something other than nitrous-oxide reductase.


Pssm-ID: 275079 [Multi-domain]  Cd Length: 377  Bit Score: 71.84  E-value: 6.67e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  986 LLTAVSAAKAGTVIKLNPGTYGANIDVttvatpDKPLWICGPRTAVIDNADitKGYGFRVTgASNVVIAGMTVRNVQK-- 1063
Cdd:TIGR04247    1 LQEAIDAARPGDTIRLAPGTYKGNIVI------DKPLTLIGEGGAVIDGEG--KGTVITIK-APDVTIEGLTVRNSGTsl 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1064 -----GVAVLYSKAVTVADLRVEK--IGdeaIHLKnQTTDSTVIGNSI-STTGLNSPNYGEGVYIGTAEGNWCLYNDCN- 1134
Cdd:TIGR04247   72 teddaGIKVEKADRAVIENNRLEDnlFG---IYLQ-EAHDSLIENNRItGKPDLRSNDRGNGIHLWNSPGNVIEGNTVRg 147

                          170
                   ....*....|....*....
gi 1094708783 1135 ------ADTSDRNLVAFNT 1147
Cdd:TIGR04247  148 grdgiyIEFSHHNLIRNNT 166
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
64-282 6.73e-12

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 69.78  E-value: 6.73e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   64 STATSTSDSDGSYATLNTDGNAQLTFTGTGITwntrvnsySGIADVYLDGVKKATVDLYSATSKTKQAVYSVSGLTAGTH 143
Cdd:COG3469      1 SSSVSTAASPTAGGASATAVTLLGAAATAASV--------TLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAAT 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  144 VLKIVRTGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPT 223
Cdd:COG3469     73 SSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTT 152

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1094708783  224 ASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:COG3469    153 VSGTETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPG 211
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 53-334 2.74e-10

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 64.94  E-value: 2.74e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   53 TSTAISWTGTWSTATSTSDSDGSYATLNTdgnAQLTFTGTG------ITWNTRVNSYSGIADVYLDGVKKATVDLYSATS 126
Cdd:pfam05109  360 TDFKCKWTLTSGTPSGCENISGAFASNRT---FDITVSGLGtapktlIITRTATNATTTTHKVIFSKAPESTTTSPTLNT 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  127 KTKQAVYSVSGLTAGTHVlkivrtGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSA--TPTASASPTASATP 204
Cdd:pfam05109  437 TGFAAPNTTTGLPSSTHV------PTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPrdNGTESKAPDMTSPT 510

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  205 TASATPTASAT-PT-ASATPTASAT-PTASATPTASATPTATPTAS----ATPTATPTASATPTASATPTASGTptaSAT 277
Cdd:pfam05109  511 SAVTTPTPNATsPTpAVTTPTPNATsPTLGKTSPTSAVTTPTPNATsptpAVTTPTPNATIPTLGKTSPTSAVT---TPT 587

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1094708783  278 PTAAPKGVGQGTYENDDPAVTLNGTWTKVASNQDSGGSTGSLSTAGYAELSFTTSGI 334
Cdd:pfam05109  588 PNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSM 644
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
633-852 2.83e-10

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 64.64  E-value: 2.83e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  633 VAPDIYPPAAPTAVTTT-PGRGTVTLAWAANTEPDVVGYRVYRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVTA 711
Cdd:COG3401    320 VTTDLTPPAAPSGLTATaVGSSSITLSWTASSDADVTGYNVYRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTA 399

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  712 LDKMGNESPVSAAVDATVPMKALPAGVYEDDDTDDVLLKGSWNKTASTGAGTDSGSSFSTLGDTGYAEVSFATSGIRWLA 791
Cdd:COG3401    400 VDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTA 479

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1094708783  792 RTNSTSGLADVYLDGVKVKTVDLYSSTTKFSQNVYEATGLSETGHTLRVVRTGNKNADSAG 852
Cdd:COG3401    480 TTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGA 540
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
27-228 1.44e-09

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 62.08  E-value: 1.44e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   27 AVTAGLLVPVQAHAADSGVSAGRYENTSTAISWTGTWSTATSTSDSDGSYATLNTDGNAQLTFTGTGITWNTRVNSYSGI 106
Cdd:COG3469     12 AGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATS 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  107 ADVYLDGVKKATVDLYSATSKTKQAVYSVSGLTAGTHVLKIVRTGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATP 186
Cdd:COG3469     92 TSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTT 171

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1094708783  187 TPSATPTASASPTASATPTASATPTASATPTASATPTASATP 228
Cdd:COG3469    172 TTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLP 213
TALPID3 pfam15324
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for ...
 177-295 7.70e-08

Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.


Pssm-ID: 434634 [Multi-domain]  Cd Length: 1288  Bit Score: 57.20  E-value: 7.70e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  177 TPSPTASATPTPsaTPTASASPTASAtPTASATPTASATPT-ASATPTASATPTASATPTASATPTATPTAsaTPTATPT 255
Cdd:pfam15324  982 TLLPTPVPTPQP--TPPCSPPSPLKE-PSPVKTPDSSPCVSeHDFFPVKEIPPEKGADTGPAVSLVITPTV--TPIATPP 1056

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1094708783  256 ASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDP 295
Cdd:pfam15324 1057 PAATPTPPLSENSIDKLKSPSPELPKPWEDSDLPLEEENP 1096
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 640-729 3.32e-07

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 49.42  E-value: 3.32e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  640 PAAPTAVTTTP-GRGTVTLAWAANTEP--DVVGYRV-YRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVTALDKM 715
Cdd:cd00063      1 PSPPTNLRVTDvTSTSVTLSWTPPEDDggPITGYVVeYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|....
gi 1094708783  716 GnESPVSAAVDATV 729
Cdd:cd00063     81 G-ESPPSESVTVTT 93
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 171-239 6.36e-07

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 53.36  E-value: 6.36e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASAT-PTASATPTASATPTASATPTASAT 239
Cdd:TIGR00601   80 GTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEeSATATAPESPSTSVPSSGSDAAST 149
COG4733 COG4733
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
362-710 9.45e-07

Phage-related protein, tail protein J [Mobilome: prophages, transposons];


Pssm-ID: 443767 [Multi-domain]  Cd Length: 978  Bit Score: 53.41  E-value: 9.45e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  362 YSATTKTQQVAYEVTGLPETSHTIRiVRTGTKNASSSSPNIMLDAFVAPDIHAPLAPTGLTATVDGQDIDLAWAANAETD 441
Cdd:COG4733    578 WVSVPRTSGTSFEVPGIYAGDYEVR-VRAINALGVSSAWAASSETTVTGKTAPPPAPTGLTATGGLGGITLSWSFPVDAD 656

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  442 VKAYKVYRREGTSTTRTLIATTTADVRTFTDTARMPGATYGYDVVAVDTSDNASASSAAASATMPIDVQPA---GVYEDG 518
Cdd:COG4733    657 TLRTEIRYSTTGDWASATVAQALYPGNTYTLAGLKAGQTYYYRARAVDRSGNVSAWWVSGQASADAAGILDaitGQILET 736

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  519 DAAVTLYGPWSTVTSNMDSGGSYATLNAAGYAEVSFSTSGI----------RWISRLNSYSGIADVYLDGVKVKTVDLYS 588
Cdd:COG4733    737 ELGQELDAIIQNATVAEVVAATVTDVTAQIDTAVLFAGVATaaaigaearvAATVAESATAAAATGTAADAAGDASGGVT 816

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  589 STTKYQQVAYEVKGLPETTHTLRVVRTGTKNASSTSTAIVLDSFVAPDIYPPAAPTAVTTTPGrGTVTLAWAANTEPDVV 668
Cdd:COG4733    817 AGTSGTTGAGDTAASTTRVAAAVVLAGVVVYGDAIIESGNTGDIVATGDIASAAAGAVATTVS-GTTAADVSAVADSTAA 895

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|..
gi 1094708783  669 GYRVYRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVT 710
Cdd:COG4733    896 SLTAIVIAATTIIDAIGDGTTREPAGDIGASGGAQGFAVTIV 937
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 176-282 2.95e-06

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 51.41  E-value: 2.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  176 ATPSPTASATPTPSATPTASASPTASATPTASatptaSATPTASATPTASATPTASatPTASATPTAtPTASATPTATPT 255
Cdd:cd23959    144 TAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQS-----SASPGEVASPFASGTVSAS--PFATATDTA-PSSGAPDGFPAE 215

                           90       100
                   ....*....|....*....|....*..
gi 1094708783  256 ASATPTASATPTASGTPTASATPTAAP 282
Cdd:cd23959    216 ASAPSPFAAPASAASFPAAPVANGEAA 242
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 167-330 1.08e-05

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 50.04  E-value: 1.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  167 FDVVGSTASATPSPTASATPTPS-ATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPT 245
Cdd:NF038112  1350 FTLTVSDGTASATDTVTVTVRNVnRAPVANAGADQTVDERSTVTLSGSATDPDGDALTYAWTQTAGPTVTLTGADTATAS 1429

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  246 ASATPTATPT-------ASATPTASAT-------------PTASGTPTASATPTAAPKGVGQGTYENDDpavTLNGTWTK 305
Cdd:NF038112  1430 FTAPEVAADTeltfqltVSADGQASADvtvtvtvrnvnraPVAHAGESITVDEGSTVTLDASATDPDGD---TLTYAWTQ 1506

                          170       180
                   ....*....|....*....|....*
gi 1094708783  306 VasnqdsGGSTGSLSTAGYAELSFT 330
Cdd:NF038112  1507 V------AGPSVTLTGADSAKLTFT 1525
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 1028-1148 1.67e-05

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 46.25  E-value: 1.67e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1028 RTAVIDNADIT--KGYGFRVTGASNVVIAGMTV-RNVQKGVAVLYSKAVTVADLRVEKIGDEAIHLKNQtTDSTVIGNSI 1104
Cdd:pfam13229   32 SNATIENNTITnnGGDGIEISGSSNNTISNNTIsNNGGGGIALRGSSNNLIENNTISNNGGAGIYLSDS-SNNTIENNII 110

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1094708783 1105 STtglnspNYGEGVYIgTAEGNWCLYNDCNA-----------DTSDRNLVAFNTI 1148
Cdd:pfam13229  111 HN------NGGSGIVI-EDSSNNVTISNNTVtnnkgagilivGGSSNNTVENNTF 158
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 640-716 1.08e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 42.22  E-value: 1.08e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   640 PAAPTAVTTTP-GRGTVTLAWAANTEPDVVGYRV-YRSQGTSAPVAATTAPVTAPT--FTDDGLQPAATYRYTVTALDKM 715
Cdd:smart00060    1 PSPPSNLRVTDvTSTSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSStsYTLTGLKPGTEYEFRVRAVNGA 80


                    .
gi 1094708783   716 G 716
Cdd:smart00060   81 G 81
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
861-1023 1.66e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 45.76  E-value: 1.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  861 VAPDIYAPAAPTSVQASGI-RTGAKLTWTKSPDADVASYRIFRRATGTTTDVLVGTTdAATTSFANVGLADGGSYSWSVV 939
Cdd:COG3401    320 VTTDLTPPAAPSGLTATAVgSSSITLSWTASSDADVTGYNVYRSTSGGGTYTKIAET-VTTTSYTDTGLTPGTTYYYKVT 398

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  940 ARDTWGNDSAASLPASFTNGGDPYASFPQRYATCPTATVTVSTRAQLLTAVSAAKAGTVIKLNPGTYGANIDVTTVATPD 1019
Cdd:COG3401    399 AVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVT 478


                   ....
gi 1094708783 1020 KPLW 1023
Cdd:COG3401    479 ATTT 482
PL-6 cd14251
Polysaccharide Lyase Family 6; Polysaccharide Lyase Family 6 is a family of beta-helical ...
 980-1053 2.27e-04

Polysaccharide Lyase Family 6; Polysaccharide Lyase Family 6 is a family of beta-helical polysaccharide lyases. Members include alginate lyase (EC 4.2.2.3) and chondroitinase B (EC 4.2.2.19). Chondroitinase B is an enzyme that only cleaves the beta-(1,4)-linkage of dermatan sulfate (DS), leading to 4,5-unsaturated dermatan sulfate disaccharides as the product. DS is a highly sulfated, unbranched polysaccharide belonging to a family of glycosaminoglycans (GAGs) composed of alternating hexosamine (gluco- or galactosamine) and uronic acid (D-glucuronic or L-iduronic acid) moieties. DS contains alternating 1,4-beta-D-galactosamine (GalNac) and 1,3-alpha-L-iduronic acid units. The related chondroitin sulfate (CS) contains alternating GalNac and 1,3-beta-D-glucuronic acid units. Alginate lyases (known as either mannuronate (EC 4.2.2.3) or guluronate lyases (EC 4.2.2.11) catalyze the degradation of alginate, a copolymer of alpha-L-guluronate and its C5 epimer beta-D-mannuronate.


Pssm-ID: 271210 [Multi-domain]  Cd Length: 369  Bit Score: 44.91  E-value: 2.27e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1094708783  980 VSTRAQLLTAVSAAKAGTVIKLNPGTY-GANIDVTTVATPDKPLWIcgpRTAVIDNADITKGYGFRVTGASNVVI 1053
Cdd:cd14251      1 VSNSEELQAAIANAKPGDTIVLANGTYtDVELIFIGKGTTEAPITL---KAETPGKVVITGASSLRIGGEYLVVE 72
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 178-283 1.10e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 42.83  E-value: 1.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  178 PSPTASATPTPSATPTASASPTASATPTASATPTASATPTASaTPTASATPTASATP-TASATPTATPTASATPTATPTA 256
Cdd:NF040712   217 VEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDE-PVGPGAAPAAEPDEaTRDAGEPPAPGAAETPEAAEPP 295

                           90       100
                   ....*....|....*....|....*...
gi 1094708783  257 SATPTASATPTA-SGTPTASATPTAAPK 283
Cdd:NF040712   296 APAPAAPAAPAApEAEEPARPEPPPAPK 323
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 174-276 1.23e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 42.45  E-value: 1.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASA---TPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:NF040712   221 PAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPedePVGPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPA 300

                           90       100
                   ....*....|....*....|....*.
gi 1094708783  251 TATPTASATPTASATPTASGTPTASA 276
Cdd:NF040712   301 APAAPAAPEAEEPARPEPPPAPKPKR 326
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 178-299 1.97e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.78  E-value: 1.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  178 PSP-TASATPTPSATPTASASPTASATPTA--SATPTASATPTASATP---TASATPTASATPTASATPTATPTASATPT 251
Cdd:NF033875    60 PDPqSGSETPKTAVSEEATVQKDTTSQPTKveEVASEKNGAEQSSATPndtTNAQQPTVGAEKSAQEQPVVSPETTNEPL 139

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1094708783  252 ATPTASAtPTASATPTASGTPTASATPTaAPKGVGQGtyeNDDPAVTL 299
Cdd:NF033875   140 GQPTEVA-PAENEANKSTSIPKEFETPD-VDKAVDEA---KKDPNITV 182
fn3 pfam00041
Fibronectin type III domain;
639-717 2.52e-03

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 38.16  E-value: 2.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  639 PPAAPTAVTTTPGrgTVTLAWAANTEP--DVVGYRV-YRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVTALDKM 715
Cdd:pfam00041    2 APSNLTVTDVTST--SLTVSWTPPPDGngPITGYEVeYRPKNSGEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGG 79


                   ..
gi 1094708783  716 GN 717
Cdd:pfam00041   80 GE 81
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 868-957 2.58e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 38.25  E-value: 2.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  868 PAAPTSVQASGI-RTGAKLTWTKSPD--ADVASYRIFRRATGTTTDVLVGTTDAATTSFANVGLADGGSYSWSVVARDTW 944
Cdd:cd00063      1 PSPPTNLRVTDVtSTSVTLSWTPPEDdgGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1094708783  945 GnDSAASLPASFT 957
Cdd:cd00063     81 G-ESPPSESVTVT 92
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 168-252 2.88e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.91  E-value: 2.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  168 DVVGSTASATPSPTASATPTPSATPTASAS-PTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTA 246
Cdd:NF041121    17 RAAAPPSPEGPAPTAASQPATPPPPAAPPSpPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVPAP 96


                   ....*.
gi 1094708783  247 SATPTA 252
Cdd:NF041121    97 PALPNP 102
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 170-254 7.61e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 40.14  E-value: 7.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASAT 249
Cdd:NF040712   250 AGVEQPEDEPVGPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRRRR 329


                   ....*
gi 1094708783  250 PTATP 254
Cdd:NF040712   330 RASVP 334
 
Name Accession Description Interval E-value
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 989-1228 1.02e-16

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 83.04  E-value: 1.02e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  989 AVSAAKAGTVIKLNPGTYGANIDVttvatpDKPLWICGPRTAVIDNADitKGYGFRVTgASNVVIAGMTVRNVQK----- 1063
Cdd:COG3420     27 AIDAAPPGDTIEVPPGTYEGNIVI------DKPLTLIGEGGAVIDGGG--KGTVITIT-ADNVTVRGLTITGSGDsltdd 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1064 --GVAVLYSKAVTVADLRVEKIGDeAIHLkNQTTDSTVIGNSISTTGLNSPNYGEGVYIGTAEGNWCLYN------DC-N 1134
Cdd:COG3420     98 daGIYVRGADNAVIENNRIENNLF-GIYL-EGSDNNVIRNNTISGNRDLRADRGNGIHLWNSPGNVIEGNtisggrDGiY 175

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1135 ADTSDRNLVAFNTISGttaepmeAKAGT----SNGTMWKNTldgaaiTSSDTDSLVQVMGS-GWVIAGNTGAHSPNDAIQ 1209
Cdd:COG3420    176 LEFSDNNVIRNNTIRN-------LRYGIhymySNDNLVEGN------TFRDNGAGIALMYSkGNTVRGNTILGNSGYGIL 242

                          250
                   ....*....|....*....
gi 1094708783 1210 VWNTTAGYGFDNIVYGNAV 1228
Cdd:COG3420    243 LKESSDSVIEGNTISGNGK 261
PHA03247 PHA03247
large tegument protein UL36; Provisional
 171-283 7.27e-14

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 77.29  E-value: 7.27e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPT-----ATPT 245
Cdd:PHA03247  2724 GPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESreslpSPWD 2803

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1094708783  246 ASATPTATPTASATPTASATPTASGTPTASATPTAAPK 283
Cdd:PHA03247  2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841
PHA03247 PHA03247
large tegument protein UL36; Provisional
 171-281 9.12e-14

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 76.90  E-value: 9.12e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTA-SASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASAT 249
Cdd:PHA03247  2705 PPTPEPAPHALVSATPLPPGPAAArQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1094708783  250 PTATPTASATPTASATPTASGTPTASATPTAA 281
Cdd:PHA03247  2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAA 2816
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 171-306 3.10e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 74.64  E-value: 3.10e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPT--ATPTASA 248
Cdd:PRK07764   385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSppPAAAPSA 464

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1094708783  249 TPTATPTASATPTASATPTASGTPTASATPTAAPKGvgqGTYENDDPAVTLNGTWTKV 306
Cdd:PRK07764   465 QPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP---AAPAGADDAATLRERWPEI 519
PHA03247 PHA03247
large tegument protein UL36; Provisional
 173-282 5.78e-13

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 74.20  E-value: 5.78e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASAtPTATPTASATPTA 252
Cdd:PHA03247  2738 APAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWD-PADPPAAVLAPAA 2816

                           90       100       110
                   ....*....|....*....|....*....|
gi 1094708783  253 TPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PHA03247  2817 ALPPAASPAGPLPPPTSAQPTAPPPPPGPP 2846
PHA03247 PHA03247
large tegument protein UL36; Provisional
 173-284 6.67e-13

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 73.82  E-value: 6.67e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASAtPTASATPTATPTASATPTA 252
Cdd:PHA03247  2744 VPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWD-PADPPAAVLAPAAALPPAA 2822

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1094708783  253 TPTASATPTASATPTASGTPTASATPTAAPKG 284
Cdd:PHA03247  2823 SPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854
NosD_copper_fam TIGR04247
nitrous oxide reductase family maturation protein NosD; Members of this family include NosD, a ...
 986-1147 6.67e-13

nitrous oxide reductase family maturation protein NosD; Members of this family include NosD, a repetitive periplasmic protein required for the maturation of the copper-containing enzyme nitrous-oxide reductase. NosD appears to be part of a complex with NosF (an ABC transporter family ATP-binding protein) and NosY (a six-helix transmembrane protein in the ABC-2 permease family). However, NosDFY-like complexes appear to occur also in species whose copper requiring enzymes are something other than nitrous-oxide reductase.


Pssm-ID: 275079 [Multi-domain]  Cd Length: 377  Bit Score: 71.84  E-value: 6.67e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  986 LLTAVSAAKAGTVIKLNPGTYGANIDVttvatpDKPLWICGPRTAVIDNADitKGYGFRVTgASNVVIAGMTVRNVQK-- 1063
Cdd:TIGR04247    1 LQEAIDAARPGDTIRLAPGTYKGNIVI------DKPLTLIGEGGAVIDGEG--KGTVITIK-APDVTIEGLTVRNSGTsl 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1064 -----GVAVLYSKAVTVADLRVEK--IGdeaIHLKnQTTDSTVIGNSI-STTGLNSPNYGEGVYIGTAEGNWCLYNDCN- 1134
Cdd:TIGR04247   72 teddaGIKVEKADRAVIENNRLEDnlFG---IYLQ-EAHDSLIENNRItGKPDLRSNDRGNGIHLWNSPGNVIEGNTVRg 147

                          170
                   ....*....|....*....
gi 1094708783 1135 ------ADTSDRNLVAFNT 1147
Cdd:TIGR04247  148 grdgiyIEFSHHNLIRNNT 166
PHA03247 PHA03247
large tegument protein UL36; Provisional
 168-323 8.58e-13

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 73.43  E-value: 8.58e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  168 DVVGSTASATPSPTASATPTPSATPTASASPT----ASATPTASATPTASATPTASATPTASATPTASATPTASATPTAt 243
Cdd:PHA03247  2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLppgpAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA- 2768

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  244 PTASATPTATPTASATPTASATPTASG----TPTASATPTAAPKGVGQGTYENDDPAVTL--NGTWTKVASNQDSGGSTG 317
Cdd:PHA03247  2769 PAPPAAPAAGPPRRLTRPAVASLSESReslpSPWDPADPPAAVLAPAAALPPAASPAGPLppPTSAQPTAPPPPPGPPPP 2848


                   ....*.
gi 1094708783  318 SLSTAG 323
Cdd:PHA03247  2849 SLPLGG 2854
PHA03247 PHA03247
large tegument protein UL36; Provisional
 173-284 5.30e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 71.12  E-value: 5.30e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATP-SPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPT 251
Cdd:PHA03247  2746 AGPATPgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA 2825

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1094708783  252 AT--PTASATPTASATPTASGTPTASATPTAAPKG 284
Cdd:PHA03247  2826 GPlpPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG 2860
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
64-282 6.73e-12

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 69.78  E-value: 6.73e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   64 STATSTSDSDGSYATLNTDGNAQLTFTGTGITwntrvnsySGIADVYLDGVKKATVDLYSATSKTKQAVYSVSGLTAGTH 143
Cdd:COG3469      1 SSSVSTAASPTAGGASATAVTLLGAAATAASV--------TLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAAT 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  144 VLKIVRTGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPT 223
Cdd:COG3469     73 SSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTT 152

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1094708783  224 ASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:COG3469    153 VSGTETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPG 211
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 171-289 5.21e-11

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 67.05  E-value: 5.21e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:PRK14951   367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1094708783  251 TAT-PTASATPTASATPTASGTPTASATPTAAPKGVGQGT 289
Cdd:PRK14951   447 LAPaPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAA 486
PHA03247 PHA03247
large tegument protein UL36; Provisional
 172-282 2.41e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 65.34  E-value: 2.41e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTAS--ATPTASATPTASATPTAS--ATPTATPTaS 247
Cdd:PHA03247  2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWdpADPPAAVLAPAAALPPAAspAGPLPPPT-S 2833

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1094708783  248 ATPTATPTASATPTASATP---TASGTPTASATPTAAP 282
Cdd:PHA03247  2834 AQPTAPPPPPGPPPPSLPLggsVAPGGDVRRRPPSRSP 2871
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 200-322 2.46e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 65.30  E-value: 2.46e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  200 ASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPtasgtPTASATPT 279
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP-----AAAAAAAP 108

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1094708783  280 AAPkgvgqgtyENDDPAVTLNGTWTKVASNQDSggstgSLS--TA 322
Cdd:PRK12270   109 AAA--------AVEDEVTPLRGAAAAVAKNMDA-----SLEvpTA 140
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 53-334 2.74e-10

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 64.94  E-value: 2.74e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   53 TSTAISWTGTWSTATSTSDSDGSYATLNTdgnAQLTFTGTG------ITWNTRVNSYSGIADVYLDGVKKATVDLYSATS 126
Cdd:pfam05109  360 TDFKCKWTLTSGTPSGCENISGAFASNRT---FDITVSGLGtapktlIITRTATNATTTTHKVIFSKAPESTTTSPTLNT 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  127 KTKQAVYSVSGLTAGTHVlkivrtGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSA--TPTASASPTASATP 204
Cdd:pfam05109  437 TGFAAPNTTTGLPSSTHV------PTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPrdNGTESKAPDMTSPT 510

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  205 TASATPTASAT-PT-ASATPTASAT-PTASATPTASATPTATPTAS----ATPTATPTASATPTASATPTASGTptaSAT 277
Cdd:pfam05109  511 SAVTTPTPNATsPTpAVTTPTPNATsPTLGKTSPTSAVTTPTPNATsptpAVTTPTPNATIPTLGKTSPTSAVT---TPT 587

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1094708783  278 PTAAPKGVGQGTYENDDPAVTLNGTWTKVASNQDSGGSTGSLSTAGYAELSFTTSGI 334
Cdd:pfam05109  588 PNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSM 644
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
633-852 2.83e-10

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 64.64  E-value: 2.83e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  633 VAPDIYPPAAPTAVTTT-PGRGTVTLAWAANTEPDVVGYRVYRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVTA 711
Cdd:COG3401    320 VTTDLTPPAAPSGLTATaVGSSSITLSWTASSDADVTGYNVYRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTA 399

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  712 LDKMGNESPVSAAVDATVPMKALPAGVYEDDDTDDVLLKGSWNKTASTGAGTDSGSSFSTLGDTGYAEVSFATSGIRWLA 791
Cdd:COG3401    400 VDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTA 479

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1094708783  792 RTNSTSGLADVYLDGVKVKTVDLYSSTTKFSQNVYEATGLSETGHTLRVVRTGNKNADSAG 852
Cdd:COG3401    480 TTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGA 540
COG4733 COG4733
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
815-1176 2.87e-10

Phage-related protein, tail protein J [Mobilome: prophages, transposons];


Pssm-ID: 443767 [Multi-domain]  Cd Length: 978  Bit Score: 64.97  E-value: 2.87e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  815 YSSTTKFSQNVYEATGLSETGHTLRVVRTGNKNADSAGRNITLDAfVAPDIYAPAAPTSVQASGIRTGAKLTWTKSPDAD 894
Cdd:COG4733    578 WVSVPRTSGTSFEVPGIYAGDYEVRVRAINALGVSSAWAASSETT-VTGKTAPPPAPTGLTATGGLGGITLSWSFPVDAD 656

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  895 VASYRIFRRATGTTTDVLVGTTDAATTSFANVGLADGGSYSWSVVARDTWGNDSAASLPASFTNGGDPYAS--------- 965
Cdd:COG4733    657 TLRTEIRYSTTGDWASATVAQALYPGNTYTLAGLKAGQTYYYRARAVDRSGNVSAWWVSGQASADAAGILDaitgqilet 736

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  966 --FPQRYATCPTATVTVSTRAQLLTAVSAAKAGTVIKLNPGTYGANIDVTTVATPDKPLWICGPRTAVIDNADITKGYGF 1043
Cdd:COG4733    737 elGQELDAIIQNATVAEVVAATVTDVTAQIDTAVLFAGVATAAAIGAEARVAATVAESATAAAATGTAADAAGDASGGVT 816

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1044 RVTGASNVviAGMTVRNVQKGVAVLYSKAVTVADLRVEKIGDEAIHLKNQTTDSTVIGNSISTTGLNSPNYGEGVYIGTA 1123
Cdd:COG4733    817 AGTSGTTG--AGDTAASTTRVAAAVVLAGVVVYGDAIIESGNTGDIVATGDIASAAAGAVATTVSGTTAADVSAVADSTA 894

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1094708783 1124 EgnwclynDCNADTSDRNLVAFNTISGTTAEPMEAKAGTSNGTMWKNTLDGAA 1176
Cdd:COG4733    895 A-------SLTAIVIAATTIIDAIGDGTTREPAGDIGASGGAQGFAVTIVGSF 940
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 192-278 3.86e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.53  E-value: 3.86e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  192 PTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPtasatPTASATPTASGT 271
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP-----AAAAAAAPAAAA 112


                   ....*..
gi 1094708783  272 PTASATP 278
Cdd:PRK12270   113 VEDEVTP 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 182-280 3.89e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.53  E-value: 3.89e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  182 ASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPT 261
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113

                           90       100
                   ....*....|....*....|....*..
gi 1094708783  262 ASATPTASGTPTASAT--------PTA 280
Cdd:PRK12270   114 EDEVTPLRGAAAAVAKnmdaslevPTA 140
PHA03247 PHA03247
large tegument protein UL36; Provisional
 173-282 4.27e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 64.57  E-value: 4.27e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTASATPTASATPTAS--ATPTASATPTASATPTASATPTASATPT-ATPTASAT 249
Cdd:PHA03247  2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWdpADPPAAVLAPAAALPPAASPAGPLPPPTsAQPTAPPP 2841

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1094708783  250 PTATPTASATPTASATP--------TASGTPTASATPTAAP 282
Cdd:PHA03247  2842 PPGPPPPSLPLGGSVAPggdvrrrpPSRSPAAKPAAPARPP 2882
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
169-284 4.81e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 64.10  E-value: 4.81e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTA--SATPTASATPTASATPTATPtA 246
Cdd:PRK07003   403 TGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASadSRCDERDAQPPADSGSASAP-A 481

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1094708783  247 SATPTATPTASATPTASATPTASGTPTASATPTAAPKG 284
Cdd:PRK07003   482 SDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRE 519
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 176-260 9.14e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 63.37  E-value: 9.14e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  176 ATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPT 255
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                   ....*.
gi 1094708783  256 -ASATP 260
Cdd:PRK12270   114 eDEVTP 119
PHA03378 PHA03378
EBNA-3B; Provisional
 172-284 1.24e-09

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 62.78  E-value: 1.24e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASAtPTPSATPtaSASPTASATPTASATPT--ASATPTASATPTASATPT--ASATPTASATPTATPTAS 247
Cdd:PHA03378   688 QWAPGTMQPPPRA-PTPMRPP--AAPPGRAQRPAAATGRArpPAAAPGRARPPAAAPGRArpPAAAPGRARPPAAAPGRA 764

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1094708783  248 ATPTATPTASA-TPTASATPTASGTPTASATPTAAPKG 284
Cdd:PHA03378   765 RPPAAAPGAPTpQPPPQAPPAPQQRPRGAPTPQPPPQA 802
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 170-284 1.30e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 62.42  E-value: 1.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPS-----ATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATP 244
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAApvaqaAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1094708783  245 TASATPTATP---TASATPTASATPTASGTPtASATPTAAPKG 284
Cdd:PRK14951   453 AQAAPETVAIpvrVAPEPAVASAAPAPAAAP-AAARLTPTEEG 494
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
27-228 1.44e-09

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 62.08  E-value: 1.44e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   27 AVTAGLLVPVQAHAADSGVSAGRYENTSTAISWTGTWSTATSTSDSDGSYATLNTDGNAQLTFTGTGITWNTRVNSYSGI 106
Cdd:COG3469     12 AGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATS 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  107 ADVYLDGVKKATVDLYSATSKTKQAVYSVSGLTAGTHVLKIVRTGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATP 186
Cdd:COG3469     92 TSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTT 171

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1094708783  187 TPSATPTASASPTASATPTASATPTASATPTASATPTASATP 228
Cdd:COG3469    172 TTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLP 213
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 165-254 1.46e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 62.60  E-value: 1.46e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  165 DYFDVVGSTAsaTPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATP 244
Cdd:PRK12270    31 EFFADYGPGS--TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP 108

                           90
                   ....*....|.
gi 1094708783  245 TASAT-PTATP 254
Cdd:PRK12270   109 AAAAVeDEVTP 119
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
169-297 1.57e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 62.56  E-value: 1.57e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPT---PSATPTASASP--TASATPTASATPTASATPTASATPTASATPTASATPTASATPTAT 243
Cdd:PRK07003   380 VPAPGARAAAAVGASAVPAvtaVTGAAGAALAPkaAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASA 459

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1094708783  244 PTASATPTATPTASATPTASATPTASGTPTASATPTAAP--KGVGQGTYENDDPAV 297
Cdd:PRK07003   460 DSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAApsAATPAAVPDARAPAA 515
PHA03247 PHA03247
large tegument protein UL36; Provisional
 174-282 3.60e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.49  E-value: 3.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPS-PTASATPTPSATPTASASPTA-SATPTASATPTASATPTasaTPTASATPTASATPTASATPTATPTASATPt 251
Cdd:PHA03247  2676 ASSPPQrPRRRAARPTVGSLTSLADPPPpPPTPEPAPHALVSATPL---PPGPAAARQASPALPAAPAPPAVPAGPATP- 2751

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1094708783  252 ATPTASATPTASATPTAsgtPTASATPTAAP 282
Cdd:PHA03247  2752 GGPARPARPPTTAGPPA---PAPPAAPAAGP 2779
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 174-287 3.99e-09

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 60.63  E-value: 3.99e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASATPTASAT--PTASATPTASATPTASATPTASATPTATPTAsatPT 251
Cdd:COG3266    252 GSALKAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAaqPSAVALPAAPAAAAAAAAPAEAAAPQPTAAK---PV 328

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1094708783  252 ATPTASATPTASATPTASGTPTASATPTAAPKGVGQ 287
Cdd:COG3266    329 VTETAAPAAPAPEAAAAAAAPAAPAVAKKLAADEQW 364
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
171-284 4.21e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 61.02  E-value: 4.21e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTAS-ATPTASATPTASATP--TASATPTASATPTASATPTASATPTATPTAS 247
Cdd:PRK07003   366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVpAVTAVTGAAGAALAPkaAAAAAATRAEAPPAAPAPPATADRGDDAADG 445

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1094708783  248 ATPTATPTASATPTASATPTASGTPTASATPTAAPKG 284
Cdd:PRK07003   446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPAS 482
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
169-281 4.35e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 61.02  E-value: 4.35e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASA 248
Cdd:PRK07003   439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1094708783  249 TPTATPTASATPTASATPTASGTPTASATPTAA 281
Cdd:PRK07003   519 EDAPAAAAPPAPEARPPTPAAAAPAARAGGAAA 551
PHA03378 PHA03378
EBNA-3B; Provisional
 176-284 6.28e-09

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 60.47  E-value: 6.28e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  176 ATPSPT-ASATPTPSATPTASASPTASATPTA--SATPTASATPTASATPTasatPTASATPTASATPTATPTASATPTA 252
Cdd:PHA03378   674 YQPSPTgANTMLPIQWAPGTMQPPPRAPTPMRppAAPPGRAQRPAAATGRA----RPPAAAPGRARPPAAAPGRARPPAA 749

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1094708783  253 TPTASATPTASATPT--ASGTPTAsATPTAAPKG 284
Cdd:PHA03378   750 APGRARPPAAAPGRArpPAAAPGA-PTPQPPPQA 782
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 175-296 6.66e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 60.38  E-value: 6.66e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  175 SATPSPTASATPTPSATPTASASPTASATPTASA---TPTASATPTASATPTASATPTASATPTASAtPTATPTASATPT 251
Cdd:PRK07764   616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAApehHPKHVAVPDASDGGDGWPAKAGGAAPAAPP-PAPAPAAPAAPA 694

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1094708783  252 ATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPA 296
Cdd:PRK07764   695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPV 739
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
171-282 1.04e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 59.50  E-value: 1.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSAT-PTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASAT 249
Cdd:PRK12323   370 GGAGPATAAAAPVAQPAPAAAaPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1094708783  250 PTATPtaSATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK12323   450 PAPAP--AAAPAAAARPAAAGPRPVAAAAAAAP 480
PHA03247 PHA03247
large tegument protein UL36; Provisional
 158-295 1.22e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.95  E-value: 1.22e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  158 SGRNVTIDYFDVVGSTASATPSPTASATPTPSATPTASASPTASATP-----------TASATPTASATPTAS--ATPTA 224
Cdd:PHA03247  2812 LAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvrrrppsrSPAAKPAAPARPPVRrlARPAV 2891

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1094708783  225 SATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDP 295
Cdd:PHA03247  2892 SRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
173-281 1.38e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 59.48  E-value: 1.38e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASAT--- 249
Cdd:PRK07003   427 PAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATpaa 506

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1094708783  250 --PTATPTASATPTASATPTASGTPTASATPTAA 281
Cdd:PRK07003   507 vpDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
174-285 1.66e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 59.12  E-value: 1.66e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPtat 253
Cdd:PRK12323   388 AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP--- 464

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1094708783  254 PTASATPTASATPTASGTPTASATPTAAPKGV 285
Cdd:PRK12323   465 AAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
167-289 1.80e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 58.73  E-value: 1.80e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  167 FDVVGSTASATPsPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPT---------ASATPTAS 237
Cdd:PRK12323   363 FRPGQSGGGAGP-ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPArrspapealAAARQASA 441

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1094708783  238 ATPTATPTASATPTATPTASATPTASAT---PTASGTPTASATPTAAPKGVGQGT 289
Cdd:PRK12323   442 RGPGGAPAPAPAPAAAPAAAARPAAAGPrpvAAAAAAAPARAAPAAAPAPADDDP 496
PRK10856 PRK10856
cytoskeleton protein RodZ;
171-257 1.91e-08

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 57.73  E-value: 1.91e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPT-ASATPTASATPTASATPTASAtptATPTASAT 249
Cdd:PRK10856   167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSqANVDTAATPAPAAPATPDGAA---PLPTDQAG 243


                   ....*...
gi 1094708783  250 PTATPTAS 257
Cdd:PRK10856   244 VSTPAADP 251
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 180-298 2.16e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 58.57  E-value: 2.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  180 PTASATPTPSATPTASASPTAsATPTASATPtASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASAT 259
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEA-AAPAAAPVA-QAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1094708783  260 PTAsatptasgtPTASATPTAAPKGVGQGTYENDDPAVT 298
Cdd:PRK14951   444 AVA---------LAPAPPAQAAPETVAIPVRVAPEPAVA 473
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
90-302 2.42e-08

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 58.23  E-value: 2.42e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   90 TGTGITWNTRVNSYSGIADVYLDGVKKATVDlYSATSKTKQAVYSVSGLTAGTHVLKIVRTGTKNDSSSGrnvTIDYFDV 169
Cdd:COG3469      2 SSVSTAASPTAGGASATAVTLLGAAATAASV-TLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTA---ATSSTTS 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATpTASATPTATPTASAT 249
Cdd:COG3469     78 TTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASAT-SSAGSTTTTTTVSGT 156

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1094708783  250 PTATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPAVTLNGT 302
Cdd:COG3469    157 ETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPT 209
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 172-280 2.83e-08

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 57.27  E-value: 2.83e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASP--TASATPTASATP--TASATPTASATPTASATPTASATPTASATPTATPTAS 247
Cdd:PTZ00436   223 AKAAAAPAKAAAPPAKAAAAPAKAAAApaKAAAPPAKAAAPpaKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKA 302

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1094708783  248 ATPTATPTASATPTASATPTASGTPTASATPTA 280
Cdd:PTZ00436   303 AAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPA 335
rne PRK10811
ribonuclease E; Reviewed
 168-287 3.35e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 58.13  E-value: 3.35e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  168 DVVGSTASATPSPTASATPTPSATPTASASPTASATPTASAT-PTASATPTASATPTASATPTASATPTASATPTATPTA 246
Cdd:PRK10811   874 PVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETThPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQ 953

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1094708783  247 SATPTATPTASATPTASATPTASGTPTASATPTAAPKGVGQ 287
Cdd:PRK10811   954 DETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV 994
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
174-282 3.38e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 57.96  E-value: 3.38e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASA-TPTASATPTATPTASATPTA 252
Cdd:PRK12323   404 AAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAArPAAAGPRPVAAAAAAAPARA 483

                           90       100       110
                   ....*....|....*....|....*....|
gi 1094708783  253 TPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK12323   484 APAAAPAPADDDPPPWEELPPEFASPAPAQ 513
PRK10856 PRK10856
cytoskeleton protein RodZ;
193-282 3.62e-08

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 56.96  E-value: 3.62e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  193 TASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASgtp 272
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQ--- 241

                           90
                   ....*....|
gi 1094708783  273 TASATPTAAP 282
Cdd:PRK10856   242 AGVSTPAADP 251
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 167-282 3.83e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 58.07  E-value: 3.83e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  167 FDVVGSTASATPSPTASATPTPSATPTASASPTAS---ATPTASATPTASATPtaSATPTASATPTASATPTASATPTAT 243
Cdd:PRK07764   584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPaapAAPAAPAPAGAAAAP--AEASAAPAPGVAAPEHHPKHVAVPD 661

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1094708783  244 PTASATPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK07764   662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
PRK10856 PRK10856
cytoskeleton protein RodZ;
187-270 4.11e-08

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 56.57  E-value: 4.11e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  187 TPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATpTATPTASATPTATPTASATPTASATP 266
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAA-TPAPAAPATPDGAAPLPTDQAGVSTP 247


                   ....
gi 1094708783  267 TASG 270
Cdd:PRK10856   248 AADP 251
PRK10856 PRK10856
cytoskeleton protein RodZ;
181-264 4.41e-08

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 56.57  E-value: 4.41e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  181 TASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATpTASATPTATPTASATPTATPTASATP 260
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAA-TPAPAAPATPDGAAPLPTDQAGVSTP 247


                   ....
gi 1094708783  261 TASA 264
Cdd:PRK10856   248 AADP 251
PRK10856 PRK10856
cytoskeleton protein RodZ;
189-276 4.41e-08

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 56.57  E-value: 4.41e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  189 SATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTa 268
Cdd:PRK10856   167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVS- 245


                   ....*...
gi 1094708783  269 sgTPTASA 276
Cdd:PRK10856   246 --TPAADP 251
TALPID3 pfam15324
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for ...
 177-295 7.70e-08

Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.


Pssm-ID: 434634 [Multi-domain]  Cd Length: 1288  Bit Score: 57.20  E-value: 7.70e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  177 TPSPTASATPTPsaTPTASASPTASAtPTASATPTASATPT-ASATPTASATPTASATPTASATPTATPTAsaTPTATPT 255
Cdd:pfam15324  982 TLLPTPVPTPQP--TPPCSPPSPLKE-PSPVKTPDSSPCVSeHDFFPVKEIPPEKGADTGPAVSLVITPTV--TPIATPP 1056

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1094708783  256 ASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDP 295
Cdd:pfam15324 1057 PAATPTPPLSENSIDKLKSPSPELPKPWEDSDLPLEEENP 1096
rne PRK10811
ribonuclease E; Reviewed
 178-282 9.09e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 56.97  E-value: 9.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  178 PSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASAT-PTASATPTATPTASATPTATPTA 256
Cdd:PRK10811   860 EAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETThPEVIAAPVTEQPQVITESDVAVA 939

                           90       100
                   ....*....|....*....|....*.
gi 1094708783  257 SATpTASATPTASGTPTASATPTAAP 282
Cdd:PRK10811   940 QEV-AEHAEPVVEPQDETADIEEAAE 964
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 154-292 9.28e-08

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 56.28  E-value: 9.28e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  154 NDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSATPTASASPTASAT----PTASATPTASATPTASATPTASAT-- 227
Cdd:PHA03269    16 NLIIANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASrkpdLAQAPTPAASEKFDPAPAPHQAASra 95

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1094708783  228 PTASATPTASATPTatPTASATPTATPTASATPTASATPTASGTPTASA-TPTAAPKGVGQGTYEN 292
Cdd:PHA03269    96 PDPAVAPQLAAAPK--PDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAhTQHSPPPFAYTRSMEH 159
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 172-288 9.32e-08

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 55.73  E-value: 9.32e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASP--TASATPTASATP--TASATPTASATPTASAtptASATPTASATPTATPTAS 247
Cdd:PTZ00436   237 AKAAAAPAKAAAAPAKAAAPPAKAAAPpaKAAAPPAKAAAPpaKAAAPPAKAAAPPAKA---AAAPAKAAAAPAKAAAAP 313

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1094708783  248 ATPTATPTASATPTASATPTASGTPTASATPTAAPKGVGQG 288
Cdd:PTZ00436   314 AKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVGKKAG 354
PHA03247 PHA03247
large tegument protein UL36; Provisional
 169-282 1.18e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 1.18e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTAS-ASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTAS 247
Cdd:PHA03247  2776 AAGPPRRLTRPAVASLSESRESLPSPWdPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGS 2855

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1094708783  248 ATP-------------TATPTASATPTAS--ATPTASGTPTASATPTAAP 282
Cdd:PHA03247  2856 VAPggdvrrrppsrspAAKPAAPARPPVRrlARPAVSRSTESFALPPDQP 2905
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 172-280 1.42e-07

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 55.34  E-value: 1.42e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASAtptASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPT 251
Cdd:PTZ00436   216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKA---AAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPP 292

                           90       100
                   ....*....|....*....|....*....
gi 1094708783  252 ATPTASATPTASATPTASGTPTASATPTA 280
Cdd:PTZ00436   293 AKAAAAPAKAAAAPAKAAAAPAKAAAPPA 321
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
172-275 1.56e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 56.01  E-value: 1.56e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPt 251
Cdd:PRK07003   450 PAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP- 528

                           90       100
                   ....*....|....*....|....
gi 1094708783  252 ATPTASATPTASATPTASGTPTAS 275
Cdd:PRK07003   529 APEARPPTPAAAAPAARAGGAAAA 552
PHA03247 PHA03247
large tegument protein UL36; Provisional
 171-282 1.60e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.10  E-value: 1.60e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPS-----------ATPTASASPTASATPTASATPTASAT-----PTASATPTASATPTASATP 234
Cdd:PHA03247  2641 HPPPTVPPPERPRDDPAPGrvsrprrarrlGRAAQASSPPQRPRRRAARPTVGSLTsladpPPPPPTPEPAPHALVSATP 2720

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1094708783  235 TASATPTATPTASATPtATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PHA03247  2721 LPPGPAAARQASPALP-AAPAPPAVPAGPATPGGPARPARPPTTAGPP 2767
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
170-278 1.72e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 55.65  E-value: 1.72e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTAsATPTPSATPTASASPTASATPT-------ASATPTASATPTASATPTASATPTASATPTASATPT- 241
Cdd:PRK12323   382 VAQPAPAAAAPAA-AAPAPAAPPAAPAAAPAAAAAAravaaapARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAa 460

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1094708783  242 ATPTASATPTATPTASATPTASATPTASGTPTASATP 278
Cdd:PRK12323   461 AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP 497
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 173-264 1.74e-07

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 55.24  E-value: 1.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASAS--PTASATPTASATPTASATPTASATPTASATPTASATPTASATPT-ATPTASAT 249
Cdd:COG3266    269 TTSLGEQQEVSLPPAVAAQPAAAAAaqPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAAPAAPApEAAAAAAA 348

                           90
                   ....*....|....*
gi 1094708783  250 PTATPTASATPTASA 264
Cdd:COG3266    349 PAAPAVAKKLAADEQ 363
PRK04654 PRK04654
sec-independent translocase; Provisional
 174-283 1.91e-07

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 53.28  E-value: 1.91e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSptasATPTPSATPTASASPTASATPTASATPTASATPTASATPT-ASATPTASAtPTASATPTATPTASATPTA 252
Cdd:PRK04654   103 TSATPV----ATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPViAQAQPIAPA-PHQTLVPAPHDTIVPAPHA 177

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1094708783  253 T--PTASATPTASAtPTASGTPtASATPTAAPK 283
Cdd:PRK04654   178 AhlPSAPATPVSVA-PVDAGTS-ASPTPSEPTK 208
motB PRK12799
flagellar motor protein MotB; Reviewed
 150-269 2.12e-07

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 54.72  E-value: 2.12e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  150 TGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATP--TPSATPTASASPTASATPTASATPTASATPTASATPTASAT 227
Cdd:PRK12799   296 HGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSvtTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQ 375

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1094708783  228 PTASATPTA--SATPTATPTASATPTATPtasATPTASATPTAS 269
Cdd:PRK12799   376 PQPMSTTETqqSSTGNITSTANGPTTSLP---AAPASNIPVSPT 416
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 172-283 2.14e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 55.26  E-value: 2.14e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTA-SASPTASATPTASATPTASATPTASATPTASATPTAS-ATPTASATPTATPTASAT 249
Cdd:PRK07994   363 APLPEPEVPPQSAAPAASAQATAaPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLaARQQLQRAQGATKAKKSE 442

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1094708783  250 PTATPTASATPTASAtPTASGTPTASATPTAAPK 283
Cdd:PRK07994   443 PAAASRARPVNSALE-RLASVRPAPSALEKAPAK 475
PRK10905 PRK10905
cell division protein DamX; Validated
 169-280 2.15e-07

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 54.56  E-value: 2.15e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTA-----SATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTAT 243
Cdd:PRK10905   118 AVNSTLPTEPATVApvrngNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKA 197

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1094708783  244 PTASATPTATPTASATPTASATPTASGTPTASATPTA 280
Cdd:PRK10905   198 PAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTA 234
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
181-267 2.75e-07

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 55.24  E-value: 2.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  181 TASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATP 260
Cdd:PRK11907    19 TASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTSEARTV 98


                   ....*..
gi 1094708783  261 TASATPT 267
Cdd:PRK11907    99 TPAATET 105
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 172-268 2.85e-07

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 54.47  E-value: 2.85e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPT-ASATPTATPTASATP 250
Cdd:COG3266    276 QEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAAPAAPApEAAAAAAAPAAPAVA 355

                           90
                   ....*....|....*...
gi 1094708783  251 TATPtASATPTASATPTA 268
Cdd:COG3266    356 KKLA-ADEQWLASQPASH 372
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
169-282 3.07e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.88  E-value: 3.07e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPtASATPTASATPTASATPTASATPTASATPTASATPTASA-TPTATPTAS 247
Cdd:PRK12323   394 AAAPAPAAPPAAPAAAPAAAAAARAVAAAP-ARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAArPAAAGPRPV 472

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1094708783  248 ATPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK12323   473 AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFA 507
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 640-729 3.32e-07

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 49.42  E-value: 3.32e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  640 PAAPTAVTTTP-GRGTVTLAWAANTEP--DVVGYRV-YRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVTALDKM 715
Cdd:cd00063      1 PSPPTNLRVTDvTSTSVTLSWTPPEDDggPITGYVVeYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|....
gi 1094708783  716 GnESPVSAAVDATV 729
Cdd:cd00063     81 G-ESPPSESVTVTT 93
PHA03247 PHA03247
large tegument protein UL36; Provisional
 178-268 4.60e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 54.56  E-value: 4.60e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  178 PSPTASATP---TPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATP 254
Cdd:PHA03247   381 PTRKRRSARhaaTPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATE 460

                           90
                   ....*....|....
gi 1094708783  255 TASATPTaSATPTA 268
Cdd:PHA03247   461 PAPDDPD-DATRKA 473
PRK12495 PRK12495
hypothetical protein; Provisional
 171-295 4.78e-07

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 52.18  E-value: 4.78e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASatPTASATPTASATPTASATPTASATPTASATPTASATPtATPTASATP 250
Cdd:PRK12495    81 GAEATAPSDAGSQASPDDDAQPAAEAEAADQ--SAPPEASSTSATDEAATDPPATAAARDGPTPDPTAQP-ATPDERRSP 157

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1094708783  251 TATPTASATPTASATPTASGTPT---ASATPTAAPKGVGQGTYENDDP 295
Cdd:PRK12495   158 RQRPPVSGEPPTPSTPDAHVAGTlqaARESLVETLARFARRAAATDDP 205
PHA03378 PHA03378
EBNA-3B; Provisional
 167-282 5.24e-07

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 54.30  E-value: 5.24e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  167 FDVVGStasATPSPTASATPTPSaTPTASASPTASATPT---ASATPTASATPTASATPTASATPTA--SATPTASATPT 241
Cdd:PHA03378   643 FNVLVF---PTPHQPPQVEITPY-KPTWTQIGHIPYQPSptgANTMLPIQWAPGTMQPPPRAPTPMRppAAPPGRAQRPA 718

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1094708783  242 ATPTASATPTATPTASATPTASATPT--ASGTPTASATPTAAP 282
Cdd:PHA03378   719 AATGRARPPAAAPGRARPPAAAPGRArpPAAAPGRARPPAAAP 761
Not5 COG5665
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];
172-282 5.52e-07

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];


Pssm-ID: 444384 [Multi-domain]  Cd Length: 874  Bit Score: 54.28  E-value: 5.52e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPsatptasasPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPT 251
Cdd:COG5665    279 LTTSNTPTSTAKAQPQP---------PTKKQPAKEPPSDTASGNPSAPSVLINSDSPTSEDPATASVPTTEETTAFTTPS 349

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1094708783  252 ATPTASATP----TASATPTASGTPTASATPTAAP 282
Cdd:COG5665    350 SVPSTPAEKdtpaTDLATPVSPTPPETSVDKKVSP 384
PRK10856 PRK10856
cytoskeleton protein RodZ;
205-285 5.94e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 53.11  E-value: 5.94e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  205 TASATPTASATPTASATPTASATPTASATPTASATPTATPTASAtPTATPTASATPTASATPTASGTPTASATPTAAPKG 284
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA-VVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAG 243


                   .
gi 1094708783  285 V 285
Cdd:PRK10856   244 V 244
motB PRK12799
flagellar motor protein MotB; Reviewed
 129-279 6.12e-07

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 53.57  E-value: 6.12e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  129 KQAVYSVSGLTAGTHVLKIVR-TGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSATPTAsasptASATPTAS 207
Cdd:PRK12799   266 KQSQHDIEHENLDNRALDIEKaTGLKQIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSS-----VTTQSATT 340

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1094708783  208 ATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTAS--GTPTASATPT 279
Cdd:PRK12799   341 TQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSlpAAPASNIPVS 414
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 171-239 6.36e-07

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 53.36  E-value: 6.36e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASAT-PTASATPTASATPTASATPTASAT 239
Cdd:TIGR00601   80 GTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEeSATATAPESPSTSVPSSGSDAAST 149
PHA03381 PHA03381
tegument protein VP22; Provisional
 178-270 7.51e-07

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 52.32  E-value: 7.51e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  178 PSPTASATPTPSATPTASASPTASATPTASATPTASATPTA--SATPTASATPTASAtPTASATpTATPTASATPTATPT 255
Cdd:PHA03381   100 SGPGPARGARGPAGSRGRGRRAESPSPRDPPNPKGASAPRGrkSACADSAALLDAPA-PAAPKR-QKTPAGLARKLHFST 177

                           90
                   ....*....|....*
gi 1094708783  256 ASATPTASATPTASG 270
Cdd:PHA03381   178 APTSPTAPWTPRVAG 192
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
169-282 8.75e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 53.31  E-value: 8.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTASAtptASATPTASATPtASATPTASA---TPTASATPTATPT 245
Cdd:PRK07003   362 VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTA---VTGAAGAALAP-KAAAAAAATraeAPPAAPAPPATAD 437

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1094708783  246 ASATPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK07003   438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADS 474
PHA03247 PHA03247
large tegument protein UL36; Provisional
 134-281 8.86e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 8.86e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  134 SVSGLTAGTHVLKIVR--TGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASatPTPSATPTASASPTASATPTASATPT 211
Cdd:PHA03247   364 SLEDLSAGRHHPKRASlpTRKRRSARHAATPFARGPGGDDQTRPAAPVPASV--PTPAPTPVPASAPPPPATPLPSAEPG 441

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1094708783  212 ASATPtasATPTASATPTASATPTASATPTATPTASAT-----PTATPTASATPTASATPTASGTPTASATPTAA 281
Cdd:PHA03247   442 SDDGP---APPPERQPPAPATEPAPDDPDDATRKALDAlrerrPPEPPGADLAELLGRHPDTAGTVVRLAAREAA 513
COG4733 COG4733
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
362-710 9.45e-07

Phage-related protein, tail protein J [Mobilome: prophages, transposons];


Pssm-ID: 443767 [Multi-domain]  Cd Length: 978  Bit Score: 53.41  E-value: 9.45e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  362 YSATTKTQQVAYEVTGLPETSHTIRiVRTGTKNASSSSPNIMLDAFVAPDIHAPLAPTGLTATVDGQDIDLAWAANAETD 441
Cdd:COG4733    578 WVSVPRTSGTSFEVPGIYAGDYEVR-VRAINALGVSSAWAASSETTVTGKTAPPPAPTGLTATGGLGGITLSWSFPVDAD 656

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  442 VKAYKVYRREGTSTTRTLIATTTADVRTFTDTARMPGATYGYDVVAVDTSDNASASSAAASATMPIDVQPA---GVYEDG 518
Cdd:COG4733    657 TLRTEIRYSTTGDWASATVAQALYPGNTYTLAGLKAGQTYYYRARAVDRSGNVSAWWVSGQASADAAGILDaitGQILET 736

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  519 DAAVTLYGPWSTVTSNMDSGGSYATLNAAGYAEVSFSTSGI----------RWISRLNSYSGIADVYLDGVKVKTVDLYS 588
Cdd:COG4733    737 ELGQELDAIIQNATVAEVVAATVTDVTAQIDTAVLFAGVATaaaigaearvAATVAESATAAAATGTAADAAGDASGGVT 816

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  589 STTKYQQVAYEVKGLPETTHTLRVVRTGTKNASSTSTAIVLDSFVAPDIYPPAAPTAVTTTPGrGTVTLAWAANTEPDVV 668
Cdd:COG4733    817 AGTSGTTGAGDTAASTTRVAAAVVLAGVVVYGDAIIESGNTGDIVATGDIASAAAGAVATTVS-GTTAADVSAVADSTAA 895

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|..
gi 1094708783  669 GYRVYRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVT 710
Cdd:COG4733    896 SLTAIVIAATTIIDAIGDGTTREPAGDIGASGGAQGFAVTIV 937
PRK10856 PRK10856
cytoskeleton protein RodZ;
154-239 9.93e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 52.34  E-value: 9.93e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  154 NDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSATPTASASPTASAtptASATPTASATPTASATPTASAT-PTASA 232
Cdd:PRK10856   166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQ---ANVDTAATPAPAAPATPDGAAPlPTDQA 242


                   ....*..
gi 1094708783  233 TPTASAT 239
Cdd:PRK10856   243 GVSTPAA 249
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 191-283 1.02e-06

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 53.17  E-value: 1.02e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  191 TPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASG 270
Cdd:PLN02217   558 IPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPE 637

                           90
                   ....*....|....
gi 1094708783  271 TP-TASATPTAAPK 283
Cdd:PLN02217   638 SSiKVASTETASPE 651
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 172-311 1.10e-06

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 53.01  E-value: 1.10e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASP-TASATPTASATPTASAT--------------PTASATPTA--SATPTASATP 234
Cdd:PLN03209   390 PPSSSPASSKSVDAVAKPAEPDVVPSPgSASNVPEVEPAQVEAKKtrplspyaryedlkPPTSPSPTAptGVSPSVSSTS 469

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1094708783  235 TASATP-TATPTASATPTATPTASATPTASATPTASGTPTASATPtAAPKGVGQGTYENDDPAVTLNGTWTKVASNQD 311
Cdd:PLN03209   470 SVPAVPdTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSP-AAPVGKVAPSSTNEVVKVGNSAPPTALADEQH 546
PHA03378 PHA03378
EBNA-3B; Provisional
 174-286 1.13e-06

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 53.15  E-value: 1.13e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPT--ASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASA--- 248
Cdd:PHA03378   699 RAPTPMRPPAAPPGRAQRPAAATGRArpPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTpqp 778

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1094708783  249 TPTATPTASATPTASATPT--ASGTPTA-SATPTAAPKGVG 286
Cdd:PHA03378   779 PPQAPPAPQQRPRGAPTPQppPQAGPTSmQLMPRAAPGQQG 819
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 155-259 1.20e-06

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 52.20  E-value: 1.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  155 DSSSGRNVTIDYFDVVGSTASATPSPTASATPtPSATPTASASPTASatPTASATPTASATPtasatptASATPTASATP 234
Cdd:TIGR00601   55 DDKTVKEYKIKEKDFVVVMVSKPKTGTGKVAP-PAATPTSAPTPTPS--PPASPASGMSAAP-------ASAVEEKSPSE 124

                           90       100
                   ....*....|....*....|....*
gi 1094708783  235 TASATPTATPTASATPTATPTASAT 259
Cdd:TIGR00601  125 ESATATAPESPSTSVPSSGSDAAST 149
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 182-283 1.26e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.89  E-value: 1.26e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  182 ASATPTPSATPtasASPTASATPTASATPTASATPTASATPTASATPTASATPTASaTPTATPTASATPTATPTASATPT 261
Cdd:PRK14950   358 ALLVPVPAPQP---AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPP-PVPPRPVAPPVPHTPESAPKLTR 433

                           90       100
                   ....*....|....*....|..
gi 1094708783  262 ASATPTASGTPTASATPTAAPK 283
Cdd:PRK14950   434 AAIPVDEKPKYTPPAPPKEEEK 455
TALPID3 pfam15324
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for ...
 170-271 1.34e-06

Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.


Pssm-ID: 434634 [Multi-domain]  Cd Length: 1288  Bit Score: 52.97  E-value: 1.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPtaSASPTASATPTASAtPTASATPTASATPT-ASATPTASATPTASATPTATPTASA 248
Cdd:pfam15324  969 VAASVPGDLPTKETLLPTPVPTP--QPTPPCSPPSPLKE-PSPVKTPDSSPCVSeHDFFPVKEIPPEKGADTGPAVSLVI 1045

                           90       100
                   ....*....|....*....|...
gi 1094708783  249 TPTATPTASATPTASATPTASGT 271
Cdd:pfam15324 1046 TPTVTPIATPPPAATPTPPLSEN 1068
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 187-277 1.43e-06

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 52.26  E-value: 1.43e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  187 TPSATPTASASPTASATPTASATPTASatPTASATPTASATPTASATPTASATPtATPTASATPTATPT-ASATPTASAT 265
Cdd:PHA03291   191 PLSAPRLGPADVFVPATPRPTPRTTAS--PETTPTPSTTTSPPSTTIPAPSTTI-AAPQAGTTPEAEGTpAPPTPGGGEA 267

                           90
                   ....*....|..
gi 1094708783  266 PTASGTPTASAT 277
Cdd:PHA03291   268 PPANATPAPEAS 279
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
172-263 1.48e-06

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 51.86  E-value: 1.48e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPT 251
Cdd:pfam16014   79 VVLSTLPAAMAVTPPIPASMANVVAPPTQPAASSTAACAVSSVLPEIKIKQEAEPMDTSQSVPPLTPTSISPALTSLANN 158

                           90
                   ....*....|...
gi 1094708783  252 -ATPTASATPTAS 263
Cdd:pfam16014  159 lSVPAGDLLPGAS 171
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
171-283 1.49e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.54  E-value: 1.49e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTAS---ATPTASATPTASATPTATPTAS 247
Cdd:PRK07003   453 ANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVpdaRAPAAASREDAPAAAAPPAPEA 532

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1094708783  248 ATPT---ATPTASATPTASA---------------TPTASGTPTASATPTAAPK 283
Cdd:PRK07003   533 RPPTpaaAAPAARAGGAAAAldvlrnagmrvssdrGARAAAAAKPAAAPAAAPK 586
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 172-282 1.51e-06

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 51.40  E-value: 1.51e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPtasaTPT 251
Cdd:PHA02682    80 SPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPP----LPT 155

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1094708783  252 ATPTASATPT---ASATP---TASGTPTASATPTAAP 282
Cdd:PHA02682   156 PKPAPAAKPIflhNQLPPpdyPAASCPTIETAPAASP 192
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
173-276 1.56e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 52.57  E-value: 1.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPT------ASATPTASATPTASATPTASATPTATPTA 246
Cdd:PRK12323   466 AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPApaqpdaAPAGWVAESIPDPATADPDDAFETLAPAP 545

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1094708783  247 SATPTATPTASATPTASATP---TASGTPTASA 276
Cdd:PRK12323   546 AAAPAPRAAAATEPVVAPRPpraSASGLPDMFD 578
PHA03381 PHA03381
tegument protein VP22; Provisional
 165-281 1.61e-06

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 51.55  E-value: 1.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  165 DYFDVVGSTASATPSPTASATPTPSATPTASAsPTASATPTASATPTASATPTASATPTASATPTASATPTA--SATPTA 242
Cdd:PHA03381    70 DYPYYTGSSSEDERPADPRPSRRPHAQPEASG-PGPARGARGPAGSRGRGRRAESPSPRDPPNPKGASAPRGrkSACADS 148

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1094708783  243 TPTASATPTATPTASATPTASAT----PTASGTPTASATPTAA 281
Cdd:PHA03381   149 AALLDAPAPAAPKRQKTPAGLARklhfSTAPTSPTAPWTPRVA 191
PHA03247 PHA03247
large tegument protein UL36; Provisional
 188-284 2.72e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 2.72e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  188 PSATPTASASPTASATPTASATPTASATPTAS---ATPTASATPTASATPTASATPTATPTasatPTATPTASATPTASA 264
Cdd:PHA03247   357 PTWTPPSSLEDLSAGRHHPKRASLPTRKRRSArhaATPFARGPGGDDQTRPAAPVPASVPT----PAPTPVPASAPPPPA 432

                           90       100
                   ....*....|....*....|
gi 1094708783  265 TPTASGTPTASATPTAAPKG 284
Cdd:PHA03247   433 TPLPSAEPGSDDGPAPPPER 452
PRK10118 PRK10118
flagellar hook length control protein FliK;
173-284 2.73e-06

flagellar hook length control protein FliK;


Pssm-ID: 236652 [Multi-domain]  Cd Length: 408  Bit Score: 51.40  E-value: 2.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTA--SASPTASATPTASATPTASATPTASATPTASAT---PTASATPTASATPTATPTAS 247
Cdd:PRK10118   153 QDNTTPVADAPSTVLPAEKPTLltKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPddaPGTPAQPLTPLAAEAQAKAE 232

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1094708783  248 ATPTATPTASATPTASATPTASGTPTASATPTAAPKG 284
Cdd:PRK10118   233 VISTPSPVTAAASPTITPHQTQPLPTAAAPVLSAPLG 269
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
181-282 2.90e-06

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 51.78  E-value: 2.90e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  181 TASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATP 260
Cdd:PRK11907     7 SKSAVALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSE 86

                           90       100
                   ....*....|....*....|..
gi 1094708783  261 TASATPTASGTPTASATPTAAP 282
Cdd:PRK11907    87 ATDTTTSEARTVTPAATETSKP 108
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 176-282 2.95e-06

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 51.41  E-value: 2.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  176 ATPSPTASATPTPSATPTASASPTASATPTASatptaSATPTASATPTASATPTASatPTASATPTAtPTASATPTATPT 255
Cdd:cd23959    144 TAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQS-----SASPGEVASPFASGTVSAS--PFATATDTA-PSSGAPDGFPAE 215

                           90       100
                   ....*....|....*....|....*..
gi 1094708783  256 ASATPTASATPTASGTPTASATPTAAP 282
Cdd:cd23959    216 ASAPSPFAAPASAASFPAAPVANGEAA 242
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 171-284 3.03e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 51.71  E-value: 3.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:PHA03307   111 PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPP 190

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1094708783  251 TATPTASATPTASATPTASGTPTASATPTAAPKG 284
Cdd:PHA03307   191 AEPPPSTPPAAASPRPPRRSSPISASASSPAPAP 224
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 198-271 3.15e-06

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 51.05  E-value: 3.15e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1094708783  198 PTASATPTASATPTASATPTASATPTASATPTASATPtASATPTATPTASATPTATPTASATPTASATPTASGT 271
Cdd:TIGR00601   77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAP-ASAVEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 171-289 3.16e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 51.71  E-value: 3.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASA-----TPTASATPTASATPTASATPTASATPTASATPTATPT 245
Cdd:PHA03307   279 SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSsssssRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPP 358

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1094708783  246 ASATPTATPTASATPTASATPTASGTPTASAT-PTAAPKGVGQGT 289
Cdd:PHA03307   359 PADPSSPRKRPRPSRAPSSPAASAGRPTRRRArAAVAGRARRRDA 403
motB PRK12799
flagellar motor protein MotB; Reviewed
 199-320 3.21e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 51.25  E-value: 3.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  199 TASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTaSATPTATPTASATPTASATPTASGTPTASATP 278
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTT-QASAVALSSAGVLPSDVTLPGTVALPAAEPVN 373

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1094708783  279 TAAPKGVGQGTYE--NDDPAVTLNGTWTKVASNQDSGGSTGSLS 320
Cdd:PRK12799   374 MQPQPMSTTETQQssTGNITSTANGPTTSLPAAPASNIPVSPTS 417
PRK11901 PRK11901
hypothetical protein; Reviewed
 150-289 3.21e-06

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 50.84  E-value: 3.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  150 TGTKNDSSSGRNVtidyfDVVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPT------ 223
Cdd:PRK11901    67 QQSSNNAGAEKNI-----DLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQtpngqq 141

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  224 -----------------------------ASATPTASAT-PTASATPTATPTASATPTATPTASATPTASATPTASGTPT 273
Cdd:PRK11901   142 rielpgnisdalsqqqgqvnaasqnaqgnTSTLPTAPATvAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVP 221

                          170
                   ....*....|....*.
gi 1094708783  274 ASATPTAAPKGVGQGT 289
Cdd:PRK11901   222 PATSGKPKSGAASARA 237
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
169-254 3.52e-06

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 51.39  E-value: 3.52e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTAS-ASPTASATPTASATPTASATPTASATpTASATPTASATPTASATpTATPTAS 247
Cdd:PRK11907    24 KLAQAEEIVTTTPATSTEAEQTTPVESdATEEADNTETPVAATTAAEAPSSSET-AETSDPTSEATDTTTSE-ARTVTPA 101


                   ....*..
gi 1094708783  248 ATPTATP 254
Cdd:PRK11907   102 ATETSKP 108
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 174-282 3.76e-06

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 50.72  E-value: 3.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASATPTASATP--TASATPTASATP--TASATPTASATPTATPTASAT 249
Cdd:PTZ00436   193 AAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPpaKAAAAPAKAAAApaKAAAPPAKAAAPPAKAAAPPA 272

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1094708783  250 PTATPTA-SATPTASATPTASGTPTASATPTAAP 282
Cdd:PTZ00436   273 KAAAPPAkAAAPPAKAAAPPAKAAAAPAKAAAAP 306
PHA03247 PHA03247
large tegument protein UL36; Provisional
 181-282 3.84e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 3.84e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  181 TASATPTPSATPtasASPTASATPTAsATPTASATPTASATPTASATPTASATPTASATPTATPTASATPtaTPTASATP 260
Cdd:PHA03247   369 SAGRHHPKRASL---PTRKRRSARHA-ATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP--LPSAEPGS 442

                           90       100
                   ....*....|....*....|..
gi 1094708783  261 TASATPTASGTPTASATPTAAP 282
Cdd:PHA03247   443 DDGPAPPPERQPPAPATEPAPD 464
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 173-281 3.93e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 51.11  E-value: 3.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTASATPTASATPTA-SATPTASATPT--ASATPTASATPTASATPTATPTASAT 249
Cdd:pfam17823   87 TAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAaQSLPAAIAALPseAFSAPRAAACRANASAAPRAAIAAAS 166

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1094708783  250 PTATPTASATPTASATPTASGTPTASATPTAA 281
Cdd:pfam17823  167 APHAASPAPRTAASSTTAASSTTAASSAPTTA 198
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
171-281 4.05e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.42  E-value: 4.05e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASAS---PTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTAS 247
Cdd:PRK12323   443 GPGGAPAPAPAPAAAPAAAARPAAAGPrpvAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1094708783  248 ATPTATPTASATPTASATPTASgtPTASATPTAA 281
Cdd:PRK12323   523 AESIPDPATADPDDAFETLAPA--PAAAPAPRAA 554
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 170-250 4.21e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.14  E-value: 4.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASAT 249
Cdd:PRK07764   432 APAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511


                   .
gi 1094708783  250 P 250
Cdd:PRK07764   512 L 512
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
180-286 4.54e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 50.93  E-value: 4.54e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  180 PTASATPTPSATPTASASPtaSATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTAtptASAT 259
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKP--VFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPA---AVPV 437

                           90       100
                   ....*....|....*....|....*..
gi 1094708783  260 PTASATPTASGTPTASATPTAAPKGVG 286
Cdd:PRK14971   438 NPPSTAPQAVRPAQFKEEKKIPVSKVS 464
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
170-260 4.86e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 50.93  E-value: 4.86e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPT-PSATPTASASPTASATPTASATPTaSATPTASATPTASATPTASA-TPTASATPTATPTAS 247
Cdd:PRK14971   373 RGPKQHIKPVFTQPAAAPqPSAAAAASPSPSQSSAAAQPSAPQ-SATQPAGTPPTVSVDPPAAVpVNPPSTAPQAVRPAQ 451

                           90
                   ....*....|...
gi 1094708783  248 ATPTATPTASATP 260
Cdd:PRK14971   452 FKEEKKIPVSKVS 464
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 182-281 4.96e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 50.96  E-value: 4.96e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  182 ASATPTPSATPTASASPTASATPTASATPTASAT---PTASATPTASATPTASATPTASATPTATPTASATPTATPTASA 258
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAaniPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDE 440

                           90       100
                   ....*....|....*....|...
gi 1094708783  259 TPTASATPTASGTPTASATPTAA 281
Cdd:PRK14950   441 KPKYTPPAPPKEEEKALIADGDV 463
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 171-280 5.07e-06

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 50.33  E-value: 5.07e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATP--TASATPTASATPTASATPTASATPTASATPTATPTASA 248
Cdd:PTZ00436   196 AAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPpaKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1094708783  249 TPTATPTASATPTASATPTASGTPTASATPTA 280
Cdd:PTZ00436   276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPA 307
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 180-269 5.14e-06

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 50.34  E-value: 5.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  180 PTASATP-TPSATPTASASPTASATPTASATPTASATPTASATPtasATPTASATPTASATPTatptasatpTATPTASA 258
Cdd:PHA03291   199 PADVFVPaTPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTI---AAPQAGTTPEAEGTPA---------PPTPGGGE 266

                           90
                   ....*....|.
gi 1094708783  259 TPTASATPTAS 269
Cdd:PHA03291   267 APPANATPAPE 277
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 10-1237 5.59e-06

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 50.92  E-value: 5.59e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   10 TIPAAARIGATSVLAAFAVTAGLLVPVQAHAADSGVSAGRYENTSTAISWTGTWSTATSTSDSDGSYATLNTDGNAQLTF 89
Cdd:COG3210    404 SLATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSAT 483

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   90 TGTGITWNTRVNSYSGIADVYLDGVKKATVDLYSATSKTKQAVYSVSGLTAGTHVLKIVRTGTKNDSSSGRNVTIDYFDV 169
Cdd:COG3210    484 TLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVSGGASGTTAASGSNT 563

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASAT 249
Cdd:COG3210    564 ANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAAL 643

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  250 PTATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPAVTLNGTWTKVASNQDSGGSTGSLSTAGYAELSF 329
Cdd:COG3210    644 SGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTGQIGALA 723

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  330 TTSGIRwITRYNTYSGI-----------------------ADVYLDGTKVRTVDLYSATTKTQQVA---YEVTGLPETSH 383
Cdd:COG3210    724 NANGDT-VTFGNLGTGAtltlnagvtitsgnagtlsigltANTTASGTTLTLANANGNTSAGATLDnagAEISIDITADG 802

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  384 TIRIVRTGTKNASSSSPNIMLDAFVAPDIHAPLAPTGLTATVDGQDIDLAWAANAETDVKAYKVYRREGTSTTRTLIATT 463
Cdd:COG3210    803 TITAAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSG 882

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  464 TADVRTFTDTARMPGATYGYDVVAVDTSDNASASSAAASATMPIDVQPAGVYEDGDAAVTLYGPWSTVTSNMDSGGSYAT 543
Cdd:COG3210    883 GVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDG 962

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  544 LNAAGYAEVSFSTSGIRWISRLNSYSGIADVYLDGVKVKTVDLYSSTTKYQQVAYEVKGLPETTHTLRVVRTGTKNASST 623
Cdd:COG3210    963 AGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGG 1042

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  624 STAIVLDSFVAPDIYPPAAPTAVTTTPGRGTVTLAWAANTEPDVVGYRVYRSQGTSAPVAATTAPVTAPTFTDDGLQPAA 703
Cdd:COG3210   1043 QNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVG 1122

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  704 TYRYTVTALDKMGNESPVSAAVDATVPMKALPAGVYEDDDTDDVLLKGSWNKTASTGAGTDSGSSFSTLGDTGYAEVSFA 783
Cdd:COG3210   1123 GTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGD 1202

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  784 TSGIRWLARTNSTSGLADVYLDGVKVKTVDLYSSTTKFSQNVYEATGLSETGHTLRVVRTGNKNADSAGRNITLDAFVAP 863
Cdd:COG3210   1203 STGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATAT 1282

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  864 DIYAPAAPTSVQASGIRTGAKLTWTKSPDADVASYRIFRRATGTTTDVLVGTTDAATTSFANVGLADGGSYSWSVVARDT 943
Cdd:COG3210   1283 GSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSA 1362

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  944 WGNDSAASLPASFTNGGDPYASFPQRYATcpTATVTVSTRAQLLTAVSAAKAGTVIKLNPGTYGANIDVTTVATPDKPLW 1023
Cdd:COG3210   1363 AGAGSGGAAGSLAATAGAGTVLTGAGNNT--GAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGNT 1440

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1024 ICGPRTAVIDNADITKGYGFRVTGASNVVIAGMTVRNVQKGVAVLYSKAVTVADLRVEKIGDEAIHLKNQTTDSTVIGNS 1103
Cdd:COG3210   1441 TGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEVA 1520

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1104 ISTTGLNSPNYGEGVYIGTAEGNWCLYNDCNADTSDRNLVAFNTISGTTAEPMEAKAGTSNGTMWKNTLDGAAITSSDTD 1183
Cdd:COG3210   1521 KASLEGGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGGTDGAGGDTGGADDTGAQAPTAGNTATLTLS 1600

                         1210      1220      1230      1240      1250
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1094708783 1184 SLVQVMGSGWVIAGNTGAHSPNDAIQVWNTTAGYGFDNIVYGNAVSDALPGYGV 1237
Cdd:COG3210   1601 LAEGTNAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGNTTNG 1654
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 177-287 6.05e-06

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 50.25  E-value: 6.05e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  177 TPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTAS-ATPTASATPTASATPTATPTASATPTATPT 255
Cdd:cd23959    127 RETHKTAQVAPPKAEPQTAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQSsASPGEVASPFASGTVSASPFATATDTAPSS 206

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1094708783  256 ASAT--PTASATPTASGTPTASATPTAAPKGVGQ 287
Cdd:cd23959    207 GAPDgfPAEASAPSPFAAPASAASFPAAPVANGE 240
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 171-322 6.15e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 50.34  E-value: 6.15e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASasPTASATPTASATPTASATPTASATPTA-SATPTASATPTASATPTATPTASAT 249
Cdd:pfam17823   75 GTSAAHLNSTEVTAEHTPHGTDLSE--PATREGAADGAASRALAAAASSSPSSAaQSLPAAIAALPSEAFSAPRAAACRA 152

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1094708783  250 PTATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPAVTLNGTWTKVASNQDSGGSTG--SLSTA 322
Cdd:pfam17823  153 NASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGhpAAGTA 227
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 173-282 6.43e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.94  E-value: 6.43e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTAsATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTA 252
Cdd:PHA03307    99 SPAREGSPTP-PGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLS 177

                           90       100       110
                   ....*....|....*....|....*....|
gi 1094708783  253 TPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PHA03307   178 SPEETARAPSSPPAEPPPSTPPAAASPRPP 207
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 174-296 6.48e-06

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 50.25  E-value: 6.48e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASatpTATPTASATPTAT 253
Cdd:cd23959    112 AARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQS---SASPGEVASPFAS 188

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1094708783  254 PTASATPTASATPTA--SGTPTASATPTAAPKGVGQGTYENDDPA 296
Cdd:cd23959    189 GTVSASPFATATDTApsSGAPDGFPAEASAPSPFAAPASAASFPA 233
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 171-276 7.21e-06

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 50.47  E-value: 7.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPtpSATPTASASPTASATPTASatPTASATPTASATPTASATPTASATPTASATPTATPTasaTP 250
Cdd:PLN02217   564 GNPGSTNSTPTGSAAS--SNTTFSSDSPSTVVAPSTS--PPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPS---SP 636

                           90       100
                   ....*....|....*....|....*.
gi 1094708783  251 TATPTASATPTASATPTASGTPTASA 276
Cdd:PLN02217   637 ESSIKVASTETASPESSIKVASTESS 662
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 170-296 7.46e-06

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 49.95  E-value: 7.46e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPtASAT 249
Cdd:PHA03291   150 VEGATNASLFPLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTP-STTT 228

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1094708783  250 PTATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPA 296
Cdd:PHA03291   229 SPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPA 275
PHA03378 PHA03378
EBNA-3B; Provisional
 173-318 7.50e-06

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 50.45  E-value: 7.50e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTASATPT--ASATPTASATPTASATPTASATPTASAtPTASATPTATPTASATP 250
Cdd:PHA03378   712 GRAQRPAAATGRARPPAAAPGRARPPAAAPGRArpPAAAPGRARPPAAAPGRARPPAAAPGA-PTPQPPPQAPPAPQQRP 790

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1094708783  251 TATPTASATPTASATPTASGTPTASATPTAAPKGVGQ---GTYENDDPAVTLNGTWTKVAS---NQDSGGSTGS 318
Cdd:PHA03378   791 RGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQlltGGVKRGRPSLKKPAALERQAAagpTPSPGSGTSD 864
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 174-262 8.07e-06

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 49.95  E-value: 8.07e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTAS---ATPTASATPTASATPtASATPTASATPTASATPTATPTASATP 250
Cdd:PHA03291   206 ATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSttiAAPQAGTTPEAEGTP-APPTPGGGEAPPANATPAPEASRYELT 284

                           90
                   ....*....|..
gi 1094708783  251 TATPTASATPTA 262
Cdd:PHA03291   285 VTQIIQIAIPAS 296
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
174-282 8.15e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 50.26  E-value: 8.15e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASATPtASATPTASATPTASATPTASATPTASATPTATPTASATPTAT 253
Cdd:PRK12323   444 PGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAP-ARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522

                           90       100
                   ....*....|....*....|....*....
gi 1094708783  254 PTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK12323   523 AESIPDPATADPDDAFETLAPAPAAAPAP 551
motB PRK12799
flagellar motor protein MotB; Reviewed
 181-282 8.31e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 49.71  E-value: 8.31e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  181 TASATPTPSATPTASASPTASATPTASATPTASATPTASATPTAS---ATPTASATPTASATPTATPTASATPTATPTAS 257
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATttqASAVALSSAGVLPSDVTLPGTVALPAAEPVNM 374

                           90       100
                   ....*....|....*....|....*
gi 1094708783  258 ATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK12799   375 QPQPMSTTETQQSSTGNITSTANGP 399
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 183-289 8.89e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.37  E-value: 8.89e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  183 SATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTA 262
Cdd:PRK07764   366 SASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

                           90       100
                   ....*....|....*....|....*...
gi 1094708783  263 SATPT-ASGTPTASATPTAAPKGVGQGT 289
Cdd:PRK07764   446 GNAPAgGAPSPPPAAAPSAQPAPAPAAA 473
flhF PRK06995
flagellar biosynthesis protein FlhF;
170-287 9.07e-06

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 49.96  E-value: 9.07e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPtasATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASAT 249
Cdd:PRK06995    48 LAALAPPAAAAPAAAQPPPAAAPAAVSRP---AAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAA 124

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1094708783  250 PTATPTASATPTASATPTASGTPTASATPTAAPKGVGQ 287
Cdd:PRK06995   125 AENAARRLARAAAAAPRPRVPADAAAAVADAVKARIER 162
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 167-330 1.08e-05

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 50.04  E-value: 1.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  167 FDVVGSTASATPSPTASATPTPS-ATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPT 245
Cdd:NF038112  1350 FTLTVSDGTASATDTVTVTVRNVnRAPVANAGADQTVDERSTVTLSGSATDPDGDALTYAWTQTAGPTVTLTGADTATAS 1429

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  246 ASATPTATPT-------ASATPTASAT-------------PTASGTPTASATPTAAPKGVGQGTYENDDpavTLNGTWTK 305
Cdd:NF038112  1430 FTAPEVAADTeltfqltVSADGQASADvtvtvtvrnvnraPVAHAGESITVDEGSTVTLDASATDPDGD---TLTYAWTQ 1506

                          170       180
                   ....*....|....*....|....*
gi 1094708783  306 VasnqdsGGSTGSLSTAGYAELSFT 330
Cdd:NF038112  1507 V------AGPSVTLTGADSAKLTFT 1525
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 206-295 1.16e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.81  E-value: 1.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  206 ASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTAsATPTASGTPTASATPTAAPKGV 285
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPV-APPVPHTPESAPKLTRAAIPVD 439

                           90
                   ....*....|
gi 1094708783  286 GQGTYENDDP 295
Cdd:PRK14950   440 EKPKYTPPAP 449
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 171-267 1.26e-05

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 49.10  E-value: 1.26e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSatptaSASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPtasATP 250
Cdd:cd23959    157 GQHPPPAKPLPAAAAAQQS-----SASPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFAAP---ASA 228

                           90
                   ....*....|....*..
gi 1094708783  251 TATPTASATPTASATPT 267
Cdd:cd23959    229 ASFPAAPVANGEAATPT 245
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 173-256 1.28e-05

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 49.18  E-value: 1.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTAS---ATPTASATPTASATPtASATPTASATPTASATPTASATPTATPTASAT 249
Cdd:PHA03291   211 TPRTTASPETTPTPSTTTSPPSTTIPAPSttiAAPQAGTTPEAEGTP-APPTPGGGEAPPANATPAPEASRYELTVTQII 289


                   ....*..
gi 1094708783  250 PTATPTA 256
Cdd:PHA03291   290 QIAIPAS 296
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 205-292 1.31e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 49.12  E-value: 1.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  205 TASATPTASATPTAsATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASGTptaSATPTAAPKG 284
Cdd:TIGR00601   75 SKPKTGTGKVAPPA-ATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP---SSGSDAASTL 150


                   ....*...
gi 1094708783  285 VGQGTYEN 292
Cdd:TIGR00601  151 VVGSERET 158
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 169-285 1.35e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.48  E-value: 1.35e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPS-PTASATPTPSATPTASASPTASATPTASATPTAS-ATPTASATPTASATPTASATPTASATPTATPT- 245
Cdd:PRK07994   378 AASAQATAAPTaAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLaARQQLQRAQGATKAKKSEPAAASRARPVNSALe 457

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1094708783  246 --ASATPTATPTASATPTASA-----TPTASGTPTASATPTAAPKGV 285
Cdd:PRK07994   458 rlASVRPAPSALEKAPAKKEAyrwkaTNPVEVKKEPVATPKALKKAL 504
PRK11901 PRK11901
hypothetical protein; Reviewed
 150-284 1.40e-05

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 48.53  E-value: 1.40e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  150 TGTKNDSSSGRNVTIDYFDVVGSTASATPSPTaSATPTpSATPTASASPTASA-----------------------TPTA 206
Cdd:PRK11901    88 SSGNQSSPSAANNTSDGHDASGVKNTAPPQDI-SAPPI-SPTPTQAAPPQTPNgqqrielpgnisdalsqqqgqvnAASQ 165

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1094708783  207 SATPTASATPTASAT-PTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASGTPTASATPTAAPKG 284
Cdd:PRK11901   166 NAQGNTSTLPTAPATvAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARALSSAPAS 244
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 188-269 1.50e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 48.74  E-value: 1.50e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  188 PSATPTASASPtaSATPTASATPtASATPtASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPT 267
Cdd:TIGR00601   77 PKTGTGKVAPP--AATPTSAPTP-TPSPP-ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAASTLVV 152


                   ..
gi 1094708783  268 AS 269
Cdd:TIGR00601  153 GS 154
rne PRK10811
ribonuclease E; Reviewed
 169-282 1.58e-05

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 49.65  E-value: 1.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTA-SATPTASATP-TASATPTASATPTASATPTASATPTATPTA 246
Cdd:PRK10811   906 PEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAeHAEPVVEPQDeTADIEEAAETAEVVVAEPEVVAQPAAPVVA 985

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1094708783  247 -SATPTATPTASATPTASATPTASGTPT--ASATPTAAP 282
Cdd:PRK10811   986 eVAAEVETVTAVEPEVAPAQVPEATVEHnhATAPMTRAP 1024
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 174-297 1.62e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.21  E-value: 1.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPtASATPTASATPTASATPTASATPTASAtptASATPTATPTASATPTAT 253
Cdd:PRK07764   679 AAPPPAPAPAAPAAPAGAAPAQPAPAPAATP-PAGQADDPAAQPPQAAQGASAPSPAAD---DPVPLPPEPDDPPDPAGA 754

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1094708783  254 PTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPAV 297
Cdd:PRK07764   755 PAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 186-344 1.63e-05

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 48.96  E-value: 1.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  186 PTPSATPTA-SASPTASATPTASATPTASATPTASATPTASAT----PTASATPTASATPTATPTASATPTATPTASATP 260
Cdd:PHA03269    23 NTNIPIPELhTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASrkpdLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAP 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  261 TASATPTasgtPTASATPTAAPKgvgqgtyENDDPAVTLNGTWTK----VASNQDSGGSTgsLSTAGYAELSFTTSGIRW 336
Cdd:PHA03269   103 QLAAAPK----PDAAEAFTSAAQ-------AHEAPADAGTSAASKkpdpAAHTQHSPPPF--AYTRSMEHIACTHGGIQF 169


                   ....*...
gi 1094708783  337 ITRYNTYS 344
Cdd:PHA03269   170 IPYFHKFI 177
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 1028-1148 1.67e-05

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 46.25  E-value: 1.67e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1028 RTAVIDNADIT--KGYGFRVTGASNVVIAGMTV-RNVQKGVAVLYSKAVTVADLRVEKIGDEAIHLKNQtTDSTVIGNSI 1104
Cdd:pfam13229   32 SNATIENNTITnnGGDGIEISGSSNNTISNNTIsNNGGGGIALRGSSNNLIENNTISNNGGAGIYLSDS-SNNTIENNII 110

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1094708783 1105 STtglnspNYGEGVYIgTAEGNWCLYNDCNA-----------DTSDRNLVAFNTI 1148
Cdd:pfam13229  111 HN------NGGSGIVI-EDSSNNVTISNNTVtnnkgagilivGGSSNNTVENNTF 158
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 169-294 2.02e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.09  E-value: 2.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPT-PSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPT-ASATPTATPTA 246
Cdd:PRK07994   391 VAPPQAPAVPPPPASAPQQaPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERlASVRPAPSALE 470

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1094708783  247 SATP-------TATPTASATPTASATPTASGTP-TASATPTAAPKGVGQGTyENDD 294
Cdd:PRK07994   471 KAPAkkeayrwKATNPVEVKKEPVATPKALKKAlEHEKTPELAAKLAAEAI-ERDP 525
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
172-284 2.02e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 49.08  E-value: 2.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTAsATPTASATPTASA-----------------TP 234
Cdd:PRK07003   493 APRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAA-AAPAARAGGAAAAldvlrnagmrvssdrgaRA 571

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1094708783  235 TASATPTATPTASATPTATPTASATPTASA---TPTASGTPTASATPTAAPKG 284
Cdd:PRK07003   572 AAAAKPAAAPAAAPKPAAPRVAVQVPTPRAraaTGDAPPNGAARAEQAAESRG 624
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 175-282 2.15e-05

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 48.77  E-value: 2.15e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  175 SATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASAtPTASATPTASATPTASATPTATPTASATPTATP 254
Cdd:PLN03209   385 SPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQV-EAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSP 463

                           90       100
                   ....*....|....*....|....*...
gi 1094708783  255 TASATPTASATPTASgtPTASATPTAAP 282
Cdd:PLN03209   464 SVSSTSSVPAVPDTA--PATAATDAAAP 489
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 197-298 2.48e-05

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 47.55  E-value: 2.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  197 SPTASATPTASATPTASATPTASATPTASATPTASATPTASAtPTATPTASATPTATPTASATPTASATPTASGTPTASA 276
Cdd:PHA02682    80 SPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATA-PTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKP 158

                           90       100
                   ....*....|....*....|..
gi 1094708783  277 TPTAAPKGVGQGTYENDDPAVT 298
Cdd:PHA02682   159 APAAKPIFLHNQLPPPDYPAAS 180
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
178-282 2.52e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.69  E-value: 2.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  178 PSPTASATPTPSATPTAsasPTASATPTASATPTASATPTASATPtASATPTASATPtASATPtATPTASATPTATPTAS 257
Cdd:PRK07003   360 PAVTGGGAPGGGVPARV---AGAVPAPGARAAAAVGASAVPAVTA-VTGAAGAALAP-KAAAA-AAATRAEAPPAAPAPP 433

                           90       100
                   ....*....|....*....|....*
gi 1094708783  258 ATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK07003   434 ATADRGDDAADGDAPVPAKANARAS 458
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 169-270 2.54e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 48.65  E-value: 2.54e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTASATP--TASATPTASATPTAsATPTASATPTASATPTATPTA 246
Cdd:PRK14950   360 LVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEpvRETATPPPVPPRPV-APPVPHTPESAPKLTRAAIPV 438

                           90       100
                   ....*....|....*....|....
gi 1094708783  247 SATPTATPTAsatPTASATPTASG 270
Cdd:PRK14950   439 DEKPKYTPPA---PPKEEEKALIA 459
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
169-285 3.00e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 48.23  E-value: 3.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPtpSATPTASASPTASATPTASATPTASATPTASATPtaSATPTASATPTASATPTA---TPT 245
Cdd:PRK14971   364 QKGDDASGGRGPKQHIKP--VFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQ--SATQPAGTPPTVSVDPPAavpVNP 439

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1094708783  246 ASATPTATPTASATPTASATPTASGTPTASAT-----PTAAPKGV 285
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLrpiqeKAEQATGN 484
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 171-286 3.00e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 48.52  E-value: 3.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTaSATPTASAtPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:PRK14959   383 GSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPS-SAAPATPA-PSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEAS 460

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1094708783  251 TATPTASATPTASATPTASGTPTASA--TPTAAPKGVG 286
Cdd:PRK14959   461 PVPGAPDSVASASDAPPTLGDPSDTAehTPSGPRTWDG 498
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 177-278 3.16e-05

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 48.38  E-value: 3.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  177 TPSPTASATPTPSATPTASASPTASATPTASATPTAsATPTASATPTASATPTASATPTASATPTATPTASATPTATPTA 256
Cdd:PLN03209   452 SPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAA-APPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVV 530

                           90       100
                   ....*....|....*....|..
gi 1094708783  257 SATPTASATPTASGTPTASATP 278
Cdd:PLN03209   531 KVGNSAPPTALADEQHHAQPKP 552
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 154-298 3.46e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 48.17  E-value: 3.46e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  154 NDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPsaTPTASASPTASATPTASATPTASATPTASATPTASATPTASAT 233
Cdd:PRK08691   362 AAASCDANAVIENTELQSPSAQTAEKETAAKKPQP--RPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDA 439

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1094708783  234 PTASATPTAT-PTASATPTATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPAVT 298
Cdd:PRK08691   440 PDEAQTAAGTaQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVET 505
rne PRK10811
ribonuclease E; Reviewed
 173-307 3.56e-05

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 48.50  E-value: 3.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPT----------PSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTA 242
Cdd:PRK10811   821 TQSPMPLTVACASPEmasgkvwiryPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVV 900

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1094708783  243 TpTASATPTATPTASATPTASATPTAsgTPTASATPTAAPkgVGQGTYENDDPAVTLNGTWTKVA 307
Cdd:PRK10811   901 V-AEPQPEEVVVVETTHPEVIAAPVT--EQPQVITESDVA--VAQEVAEHAEPVVEPQDETADIE 960
PRK12495 PRK12495
hypothetical protein; Provisional
 169-279 3.59e-05

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 46.40  E-value: 3.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTA-SATPTASATPTASATPTAS-ATPTASATPTATPTA 246
Cdd:PRK12495    67 PVTEDGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADqSAPPEASSTSATDEAATDPpATAAARDGPTPDPTA 146

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1094708783  247 -SATPTATPTASATPTASATPTASGTPTASATPT 279
Cdd:PRK12495   147 qPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGT 180
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 1041-1150 3.67e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 47.60  E-value: 3.67e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1041 YGFRVTGASNVVIAGMTVRNVQKGVAVLYSKAVTVADLRVEKIGDEAIHLKNqTTDSTVIGNSIS--TTGLnspnYGEGV 1118
Cdd:COG3420    194 YGIHYMYSNDNLVEGNTFRDNGAGIALMYSKGNTVRGNTILGNSGYGILLKE-SSDSVIEGNTISgnGKGI----FIYNS 268

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1094708783 1119 YIGTAEGNWCLYNDCNA---DTSDRNLVAFNTISG 1150
Cdd:COG3420    269 NRNTIRGNLFAGNGIGIhltAGSEGNRIYGNNFIG 303
PHA03247 PHA03247
large tegument protein UL36; Provisional
 172-283 4.60e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 4.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTAS--------ATPTASATPTASATPTASATPTASAT-------PTASATPTA 236
Cdd:PHA03247  2633 PAANEPDPHPPPTVPPPERPRDDPAPGRVSrprrarrlGRAAQASSPPQRPRRRAARPTVGSLTsladpppPPPTPEPAP 2712

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1094708783  237 SATPTATPTASATPTATPTASATPTASATPTASGTPTASATPTAAPK 283
Cdd:PHA03247  2713 HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR 2759
motB PRK12799
flagellar motor protein MotB; Reviewed
 190-299 4.60e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 47.40  E-value: 4.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  190 ATPTASASPTASATPTASATPTASATPTASATPTASATPTASatpTASATPTATPTASATPtATPTASATPTASATPTAS 269
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSAT---TTQASAVALSSAGVLP-SDVTLPGTVALPAAEPVN 373

                           90       100       110
                   ....*....|....*....|....*....|
gi 1094708783  270 GTPTASATPTAAPKGVGQGTYENDDPAVTL 299
Cdd:PRK12799   374 MQPQPMSTTETQQSSTGNITSTANGPTTSL 403
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 148-292 4.74e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 47.99  E-value: 4.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  148 VRTGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSAT-PT-ASASPTASAT-PTASATPTASATPTAsaTPTA 224
Cdd:pfam05109  513 VTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATsPTpAVTTPTPNATiPTLGKTSPTSAVTTP--TPNA 590

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1094708783  225 SATPTASATPTASATPTATPTASATPTATP----TASATPTASATPTASGTPTASATPTAAPKGVGQGTYEN 292
Cdd:pfam05109  591 TSPTVGETSPQANTTNHTLGGTSSTPVVTSppknATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDN 662
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 173-285 4.82e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 47.65  E-value: 4.82e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTA 252
Cdd:pfam17823  151 RANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAA 230

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1094708783  253 TPTASATPTASATPTASGTPTASATPTAAPKGV 285
Cdd:pfam17823  231 VGNSSPAAGTVTAAVGTVTPAALATLAAAAGTV 263
PRK10118 PRK10118
flagellar hook length control protein FliK;
171-264 4.85e-05

flagellar hook length control protein FliK;


Pssm-ID: 236652 [Multi-domain]  Cd Length: 408  Bit Score: 47.17  E-value: 4.85e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATP-TASATPTASATPTATP-TASA 248
Cdd:PRK10118   165 TVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPDDAPGTPAQPLTPlAAEAQAKAEVISTPSPvTAAA 244

                           90
                   ....*....|....*..
gi 1094708783  249 TPTATP-TASATPTASA 264
Cdd:PRK10118   245 SPTITPhQTQPLPTAAA 261
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 172-282 4.97e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.86  E-value: 4.97e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTAS---ATPTASATPTASATPTASATPTASATPTASATPTATPTASA 248
Cdd:PHA03307    86 STPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPppaSPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD 165

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1094708783  249 TPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PHA03307   166 AASSRQAALPLSSPEETARAPSSPPAEPPPSTPP 199
PRK04654 PRK04654
sec-independent translocase; Provisional
 200-296 5.09e-05

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 45.96  E-value: 5.09e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  200 ASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPT-ASATPTA-TPTASATP----TASATPTASGTPT 273
Cdd:PRK04654   103 TSATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPViAQAQPIApAPHQTLVPaphdTIVPAPHAAHLPS 182

                           90       100
                   ....*....|....*....|....
gi 1094708783  274 ASATP-TAAPkgVGQGTYENDDPA 296
Cdd:PRK04654   183 APATPvSVAP--VDAGTSASPTPS 204
PHA03247 PHA03247
large tegument protein UL36; Provisional
 149-289 5.53e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 5.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  149 RTGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSATPTASAS----PTASATPTASATPTASATPTAS----- 219
Cdd:PHA03247  2588 RPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANepdpHPPPTVPPPERPRDDPAPGRVSrprra 2667

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  220 ---ATPTASATPTASATPTASATPTATPTASATPTA---TPTASATPTASATPTASGT-------PTASATPTAAPKGVG 286
Cdd:PHA03247  2668 rrlGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPpppTPEPAPHALVSATPLPPGPaaarqasPALPAAPAPPAVPAG 2747


                   ...
gi 1094708783  287 QGT 289
Cdd:PHA03247  2748 PAT 2750
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
169-299 6.03e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.56  E-value: 6.03e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPtASATPTASATPTASATPTASATPTATPTASA 248
Cdd:PRK12323   411 AAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAP-AAAARPAAAGPRPVAAAAAAAPARAAPAAAP 489

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1094708783  249 TPT--ATPTASATPTASATPTASGTPTASATPTAAPkGVGQGTYENDDPAVTL 299
Cdd:PRK12323   490 APAddDPPPWEELPPEFASPAPAQPDAAPAGWVAES-IPDPATADPDDAFETL 541
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 188-280 6.75e-05

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 46.87  E-value: 6.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  188 PSATPTASASPTASATPTASATPTASATptasATPTASATPTASATPTASATPTATPTAsATPTATPTASATPT-ASATP 266
Cdd:PHA03291   188 PALPLSAPRLGPADVFVPATPRPTPRTT----ASPETTPTPSTTTSPPSTTIPAPSTTI-AAPQAGTTPEAEGTpAPPTP 262

                           90
                   ....*....|....
gi 1094708783  267 TASGTPTASATPTA 280
Cdd:PHA03291   263 GGGEAPPANATPAP 276
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
170-282 6.82e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 47.15  E-value: 6.82e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTAsATPTASATPTASA-----------TPTASATPTASA 238
Cdd:PRK07003   497 AAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAA-AAPAARAGGAAAAldvlrnagmrvSSDRGARAAAAA 575

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1094708783  239 TPTATPTASATPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK07003   576 KPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQA 619
LasB COG3227
Zn-dependent metalloprotease (Neutral protease B) [Posttranslational modification, protein ...
 113-282 7.35e-05

Zn-dependent metalloprotease (Neutral protease B) [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442460 [Multi-domain]  Cd Length: 608  Bit Score: 47.00  E-value: 7.35e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  113 GVKKATVDLYSATSKTKQAVysvsgltagthvlkivrtgtkndsssgrnvtIDYFDVVGSTASATPSPTASATPTPSATP 192
Cdd:COG3227    470 ATLQAAKDLYGASSAEVAAV-------------------------------AAAWDAVGVGAATGPPPTTTTTTTTASTS 518

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  193 TASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASGTP 272
Cdd:COG3227    519 SSGSSSSVTGSGSVVVASTTTTTGSSGGTGGSAGALSAGTTSTSTSSSSTSTTSSSTTTTTAAAAAAGGTSTILVTGSTG 598

                          170
                   ....*....|
gi 1094708783  273 TASATPTAAP 282
Cdd:COG3227    599 SSTSTTTTTT 608
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 172-282 8.53e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.09  E-value: 8.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPtasatPTASATPTASATPTATP---TASA 248
Cdd:PHA03307   337 RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTR-----RRARAAVAGRARRRDATgrfPAGR 411

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1094708783  249 TPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PHA03307   412 PRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPP 445
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 169-264 9.39e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 46.73  E-value: 9.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPtASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASA 248
Cdd:PRK14950   367 QPAKPTAAAPSP-VRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT 445

                           90
                   ....*....|....*.
gi 1094708783  249 TPTATPTASATPTASA 264
Cdd:PRK14950   446 PPAPPKEEEKALIADG 461
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 172-243 9.67e-05

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 46.21  E-value: 9.67e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASA---TPTASATPTASATPTASATPTAT 243
Cdd:PTZ00144   116 SEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAaakPPEPAPAAKPPPTPVARADPRET 190
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 178-284 1.06e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 1.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  178 PSPTASATPT----------PSATPTASASPTASATPTASATPTASATPTASATPTA---------SATPTASATPTASA 238
Cdd:PHA03307   258 PRPAPITLPTriweasgwngPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRAsssssssreSSSSSTSSSSESSR 337

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1094708783  239 TPTATPTASATPTATPTASATPTASATPTASGTPTASATPTAAPKG 284
Cdd:PHA03307   338 GAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAG 383
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 199-281 1.07e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.04  E-value: 1.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  199 TASATPTASATPTAsATPTASATPtASATPtASATPTASATPTATPTASATPTATPTASATPTASATPTASGTPTASATP 278
Cdd:TIGR00601   75 SKPKTGTGKVAPPA-ATPTSAPTP-TPSPP-ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAASTLV 151


                   ...
gi 1094708783  279 TAA 281
Cdd:TIGR00601  152 VGS 154
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 194-261 1.07e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 46.21  E-value: 1.07e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1094708783  194 ASASPTASATPTASATPTASATPTASATPTASATPTASATPTASA-TPTATPTASATPTATPTASATPT 261
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAaAKPPEPAPAAKPPPTPVARADPR 188
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 640-716 1.08e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 42.22  E-value: 1.08e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   640 PAAPTAVTTTP-GRGTVTLAWAANTEPDVVGYRV-YRSQGTSAPVAATTAPVTAPT--FTDDGLQPAATYRYTVTALDKM 715
Cdd:smart00060    1 PSPPSNLRVTDvTSTSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSStsYTLTGLKPGTEYEFRVRAVNGA 80


                    .
gi 1094708783   716 G 716
Cdd:smart00060   81 G 81
PHA03193 PHA03193
tegument protein VP11/12; Provisional
 171-299 1.21e-04

tegument protein VP11/12; Provisional


Pssm-ID: 177555  Cd Length: 594  Bit Score: 46.25  E-value: 1.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATP---TPSATPTASASPTASATPTASATPTASATPTASATPTASatPTASATPTASATPTATpTAS 247
Cdd:PHA03193   454 GEIHEALANNGQAIFPecfSGDLPPIAQALLSADELPNDTTASTSNEMKGDAECPAAQ--DAAAILPASFQIENGG-AAD 530

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1094708783  248 ATPTATPTASATPTASATPTasgtpTASATP----TAAPKG-VGQGTYENDDPAVTL 299
Cdd:PHA03193   531 GSGLAIPAAMCDATAVESPS-----TVAETPperlLAAESGpRCKATAKHKGGSSKV 582
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 171-297 1.24e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 1.24e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASAS---------PTASATPTASATPTASATPTASATPTASATPTASATPTASATPT 241
Cdd:PHA03307    73 PGPGTEAPANESRSTPTWSLSTLAPASparegsptpPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1094708783  242 ATPTASATPTATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPAV 297
Cdd:PHA03307   153 PAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR 208
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 187-283 1.36e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 46.07  E-value: 1.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  187 TPSATPTASASPTASATPTASATP---TASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTAS 263
Cdd:PLN03209   452 SPSPTAPTGVSPSVSSTSSVPAVPdtaPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVK 531

                           90       100
                   ....*....|....*....|
gi 1094708783  264 ATPTASGTPTASATPTAAPK 283
Cdd:PLN03209   532 VGNSAPPTALADEQHHAQPK 551
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 173-282 1.56e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 45.72  E-value: 1.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSA--TPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:pfam17823  124 SSAAQSLPAAIAALPSEAfsAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAP 203

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1094708783  251 TATPTASATPTASatpTASGTPTASATPTAAP 282
Cdd:pfam17823  204 ATLTPARGISTAA---TATGHPAAGTALAAVG 232
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 171-283 1.66e-04

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 45.61  E-value: 1.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:COG3266    213 ASALGEAVAAAAELAALALLAAGAAEVLTARLVLLLLIIGSALKAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAA 292

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1094708783  251 TATPTASATPTASATPTASGTPTASATPTAAPK 283
Cdd:COG3266    293 AAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAA 325
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
861-1023 1.66e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 45.76  E-value: 1.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  861 VAPDIYAPAAPTSVQASGI-RTGAKLTWTKSPDADVASYRIFRRATGTTTDVLVGTTdAATTSFANVGLADGGSYSWSVV 939
Cdd:COG3401    320 VTTDLTPPAAPSGLTATAVgSSSITLSWTASSDADVTGYNVYRSTSGGGTYTKIAET-VTTTSYTDTGLTPGTTYYYKVT 398

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  940 ARDTWGNDSAASLPASFTNGGDPYASFPQRYATCPTATVTVSTRAQLLTAVSAAKAGTVIKLNPGTYGANIDVTTVATPD 1019
Cdd:COG3401    399 AVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVT 478


                   ....
gi 1094708783 1020 KPLW 1023
Cdd:COG3401    479 ATTT 482
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
174-282 1.76e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.02  E-value: 1.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASATPTASA-TPTASATPTASATPTASATPTASATPTATPT------- 245
Cdd:PRK12323   422 APARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAArPAAAGPRPVAAAAAAAPARAAPAAAPAPADDdpppwee 501

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1094708783  246 -----ASATPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK12323   502 lppefASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
PRK10856 PRK10856
cytoskeleton protein RodZ;
223-298 1.92e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 45.02  E-value: 1.92e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1094708783  223 TASATPTASATPTASATPTATPTASATPTATPTASATPTASATPT-ASGTPTASATPTAAPKGVGQGTYENDDPAVT 298
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSqANVDTAATPAPAAPATPDGAAPLPTDQAGVS 245
PHA02030 PHA02030
hypothetical protein
 168-266 1.99e-04

hypothetical protein


Pssm-ID: 222843 [Multi-domain]  Cd Length: 336  Bit Score: 44.97  E-value: 1.99e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  168 DVVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASAtPTASATPTASATPTASATPTATPTAS 247
Cdd:PHA02030   237 DFPGSALHILLGGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAA-AVAQAAPSVPQVPNVAVLPDVPQVAP 315

                           90
                   ....*....|....*....
gi 1094708783  248 ATPTATPTASATPTASATP 266
Cdd:PHA02030   316 VAAPAAPEVPAVPVVPAAP 334
SSP160 pfam06933
Special lobe-specific silk protein SSP160; This family consists of several special ...
 3-251 2.05e-04

Special lobe-specific silk protein SSP160; This family consists of several special lobe-specific silk protein SSP160 sequences which appear to be specific to Chironomus (Midge) species.


Pssm-ID: 115579 [Multi-domain]  Cd Length: 758  Bit Score: 45.53  E-value: 2.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783    3 TLSVGMPTIPAAARIGATSVL--AAFAVTAGLLVPVQAHAADSGVSAGRYENTSTAISWTGTWSTATSTSDSDGSYATLN 80
Cdd:pfam06933   60 TANATMPGFASRVGGGRFSGIikASFNLIAMISANIQAIQSGSGSASGNSSSSANSTSNSNSTTSNNSTTSSNSTTTTSN 139

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   81 TDGNAQLTFTGTgITWNTRVNSYSGIADVYLD---GVKKATVDLYS-----ATSKTKQAVYSVSGLTAGTHVLKIVRTGT 152
Cdd:pfam06933  140 STSSSNSTSSGL-TSGASVVSLIDTCAWVYQDssvGIAYLMVSILAlfygqSVSAPPYADLGIPALPANCSGAGVPQSVQ 218

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  153 KNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSAT---PTASASPTASATPTASATPTASATPTASATPTASATPT 229
Cdd:pfam06933  219 IKAAIAYINITINFINLTGQQFEDLQGPVATDCGCPNTTsvaPLVAEWEAILAALEAFANGSASANSTSNSNSTSNSTTN 298

                          250       260
                   ....*....|....*....|..
gi 1094708783  230 ASATPTASATPTATPTASATPT 251
Cdd:pfam06933  299 SNSTTTTNSTTSTNSTSSSNSS 320
Herpes_U47 pfam05467
Herpesvirus glycoprotein U47;
185-421 2.22e-04

Herpesvirus glycoprotein U47;


Pssm-ID: 283192 [Multi-domain]  Cd Length: 677  Bit Score: 45.65  E-value: 2.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  185 TPTPSATPTASASPTASATPTASATPTASATP-----TASATPTASATPTasaTPTASATPTAT----------PTASAT 249
Cdd:pfam05467  238 TTTPSSTPSSTSASITSPHIPSTNTPTPEPSPvtknfTELQTDTIKVTPN---TPTITAQTTESikkvvkrsdfPRPMYT 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  250 PTATPTASATPTASaTPTASGTPTASATPTAAPKGVgqgTYENDDPAVTLNGTWTKVASNqdsggSTGSLSTAGYAelsf 329
Cdd:pfam05467  315 PTDIPTLTIRRNAT-IKTEQNTENPTENPKSPPKPT---NFENTTIRIPETFESTTVATN-----TTQKLESTTFA---- 381

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  330 TTSGIRWITRyNTYSGIAD-VYLDGTKVRTVDLYSATTKTQQVaYEVTGLPETSHTIRIVRTGTKNASSSSPNIMLDAFV 408
Cdd:pfam05467  382 TTIGIEEISD-NIYSSPKNsIYLKSKSQQSTTKFTDTEHTTPI-LKFTTWQDAARTYMSHNTEVQNMTENFIKISLGETM 459

                          250
                   ....*....|...
gi 1094708783  409 APDIHAPLAPTGL 421
Cdd:pfam05467  460 GITPKEPTNPTQL 472
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
194-256 2.26e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 45.76  E-value: 2.26e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1094708783  194 ASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTA 256
Cdd:COG5373     41 AEAASAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAA 103
PL-6 cd14251
Polysaccharide Lyase Family 6; Polysaccharide Lyase Family 6 is a family of beta-helical ...
 980-1053 2.27e-04

Polysaccharide Lyase Family 6; Polysaccharide Lyase Family 6 is a family of beta-helical polysaccharide lyases. Members include alginate lyase (EC 4.2.2.3) and chondroitinase B (EC 4.2.2.19). Chondroitinase B is an enzyme that only cleaves the beta-(1,4)-linkage of dermatan sulfate (DS), leading to 4,5-unsaturated dermatan sulfate disaccharides as the product. DS is a highly sulfated, unbranched polysaccharide belonging to a family of glycosaminoglycans (GAGs) composed of alternating hexosamine (gluco- or galactosamine) and uronic acid (D-glucuronic or L-iduronic acid) moieties. DS contains alternating 1,4-beta-D-galactosamine (GalNac) and 1,3-alpha-L-iduronic acid units. The related chondroitin sulfate (CS) contains alternating GalNac and 1,3-beta-D-glucuronic acid units. Alginate lyases (known as either mannuronate (EC 4.2.2.3) or guluronate lyases (EC 4.2.2.11) catalyze the degradation of alginate, a copolymer of alpha-L-guluronate and its C5 epimer beta-D-mannuronate.


Pssm-ID: 271210 [Multi-domain]  Cd Length: 369  Bit Score: 44.91  E-value: 2.27e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1094708783  980 VSTRAQLLTAVSAAKAGTVIKLNPGTY-GANIDVTTVATPDKPLWIcgpRTAVIDNADITKGYGFRVTGASNVVI 1053
Cdd:cd14251      1 VSNSEELQAAIANAKPGDTIVLANGTYtDVELIFIGKGTTEAPITL---KAETPGKVVITGASSLRIGGEYLVVE 72
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 178-282 2.40e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 45.30  E-value: 2.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  178 PSPTASATPTPSATPTASASPTASAT---------------PTASATPTASATPTASATPT-ASATPTASATPTASATPT 241
Cdd:PLN03209   341 PVPTKPVTPEAPSPPIEEEPPQPKAVvprplspytayedlkPPTSPIPTPPSSSPASSKSVdAVAKPAEPDVVPSPGSAS 420

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1094708783  242 ATPTASATPTAT----------------PTASATPTA--SATPTASGTPTASATPTAAP 282
Cdd:PLN03209   421 NVPEVEPAQVEAkktrplspyaryedlkPPTSPSPTAptGVSPSVSSTSSVPAVPDTAP 479
PHA01929 PHA01929
putative scaffolding protein
 171-282 2.57e-04

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 44.66  E-value: 2.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:PHA01929    14 GLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAPAAPPAAGAALPEAL 93

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1094708783  251 TATPTASATPTASATPTASGtpTASATPTAAP 282
Cdd:PHA01929    94 EVPPPPAFTPNGEIVGTLAG--NLEGDPQLAP 123
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 165-289 2.59e-04

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 43.40  E-value: 2.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  165 DYFDVVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASaTPTASATPTATP 244
Cdd:pfam09595   49 DIIDININKQHPEQEHHENPPLNEAAKEAPSESEDAPDIDPNNQHPSQDRSEAPPLEPAAKTKPSEH-EPANPPDASNRL 127

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1094708783  245 TASATPTATPTASATPTASAT---PTASGTPTASATPTAAPKGVGQGT 289
Cdd:pfam09595  128 SPPDASTAAIREARTFRKPSTgkrNNPSSAQSDQSPPRANHEAIGRAN 175
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 79-263 2.76e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 45.08  E-value: 2.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   79 LNTDGNAQLTFTGTGITWNTRVnSYSGIADVYLDGVKKATVDLY--SATSKTKQAVYSVSGLTAGThvlkivrTGTKNDS 156
Cdd:PLN02217   501 LNTLFYSEVQNTGPGAAITKRV-TWPGIKKLSDEEILKFTPAQYiqGDAWIPGKGVPYIPGLFAGN-------PGSTNST 572

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  157 SSGRNVTidyfdvvGSTASATPSPTASAtpTPSATPTASASPTASATPTASATPtaSATPTASATPTASATPTASATP-T 235
Cdd:PLN02217   573 PTGSAAS-------SNTTFSSDSPSTVV--APSTSPPAGHLGSPPATPSKIVSP--STSPPASHLGSPSTTPSSPESSiK 641

                          170       180
                   ....*....|....*....|....*...
gi 1094708783  236 ASATPTATPTASATPTATPTASATPTAS 263
Cdd:PLN02217   642 VASTETASPESSIKVASTESSVSMVSMS 669
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 181-253 2.85e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.67  E-value: 2.85e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1094708783  181 TASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATP-TASATPTASATPTATPTASATPTAT 253
Cdd:PTZ00144   117 EIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAaAKPPEPAPAAKPPPTPVARADPRET 190
Nucleoporin_FG2 pfam15967
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ...
 172-289 2.88e-04

Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.


Pssm-ID: 435043 [Multi-domain]  Cd Length: 586  Bit Score: 45.04  E-value: 2.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPT-ASATPTASATPTA-SATPTASATPTASATPTASATPTAsATPTATPTASAT 249
Cdd:pfam15967   77 ASSTAATGPTGLTLGTPAATTAASTGFSlGFNKPAASATPFSlPASSTSGGGLSLGSVLTSTAAQQG-ATGFTLNLGGTP 155

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1094708783  250 PTATPTASATPTASATPTASGTPTASATPTaapkGVGQGT 289
Cdd:pfam15967  156 ATTTAVSTGLSLGSTLTSLGGSLFQNTNST----GLGQTT 191
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
152-279 3.12e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 44.65  E-value: 3.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  152 TKNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTAS 231
Cdd:pfam05539  201 TQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNR 280

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1094708783  232 ATPTASATPTATPTASATPTATPTASATPTASATPTASGTPTASATPT 279
Cdd:pfam05539  281 RSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPT 328
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 223-299 3.22e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.50  E-value: 3.22e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1094708783  223 TASATPTASATPTAsATPTATPTASATPTATPTASATPTASATpTASGTPTASATPTAAPKGV-GQGTYENDDPAVTL 299
Cdd:TIGR00601   75 SKPKTGTGKVAPPA-ATPTSAPTPTPSPPASPASGMSAAPASA-VEEKSPSEESATATAPESPsTSVPSSGSDAASTL 150
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 203-312 3.45e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 45.08  E-value: 3.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  203 TPTASATPTASATPTASATPTASATPTASATPTASATPTATPTAS--ATPTATPTASATPtaSATPTASGTPTASATPTA 280
Cdd:PLN02217   558 IPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGhlGSPPATPSKIVSP--STSPPASHLGSPSTTPSS 635

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1094708783  281 APKGVGQGTYENDDPAVTLngtwtKVASNQDS 312
Cdd:PLN02217   636 PESSIKVASTETASPESSI-----KVASTESS 662
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
9-213 3.49e-04

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 44.74  E-value: 3.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783    9 PTIPAAARIGATSVLAAFAVTAGLLVPVQAHAADSGVSAGRYENTSTAISWTGTWSTATSTSDSDGSYATLNTDGNAQLT 88
Cdd:COG3469     13 GGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATST 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   89 FTGTGITWNTRVNSYSGIADVYLDGVKKATVDLYSATSKTKQAVYSVSGLTAGTHVLkivRTGTKNDSSSGRNVTIDYFD 168
Cdd:COG3469     93 SATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTT---TTTVSGTETATGGTTTTSTT 169

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTAS 213
Cdd:COG3469    170 TTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLPK 214
PHA03292 PHA03292
envelope glycoprotein I; Provisional
 168-281 3.53e-04

envelope glycoprotein I; Provisional


Pssm-ID: 177577  Cd Length: 413  Bit Score: 44.56  E-value: 3.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  168 DVVGSTASATPSPTASATPTPSATPTASA---SPTASATPTASATPTASATPTASATPTASATPTASATPTASAT----- 239
Cdd:PHA03292   174 DPEPTTARPEPAAGYVATPTPRYLNAVTTstySRSMSSQPAGAATATPTPTLDTGLTTVAPPNETVVTGETALLChwfqp 253

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1094708783  240 PTATPTASA-----TPTATPTASATPTASATPTASGTPTASATPTAA 281
Cdd:PHA03292   254 STRVPTLYLhllgtTGNLTEDVLLTEDSEILRTPPPDPSSSRSPGAG 300
motB PRK12799
flagellar motor protein MotB; Reviewed
 211-322 3.72e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 44.32  E-value: 3.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  211 TASATPTASATPTASATPTASATPTASAT--PTATPTASATPTATPT---ASATPTASATPTASGTPTASATPTAAPKGV 285
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIpsPAVIPSSVTTQSATTTqasAVALSSAGVLPSDVTLPGTVALPAAEPVNM 374

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1094708783  286 GQGTYENDDPAVTLNGTWTKVASnqdsgGSTGSLSTA 322
Cdd:PRK12799   375 QPQPMSTTETQQSSTGNITSTAN-----GPTTSLPAA 406
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 176-284 4.07e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.78  E-value: 4.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  176 ATPSPTASATPTPSATPT---ASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTA 252
Cdd:PHA03307    51 AAVTVVAGAAACDRFEPPtgpPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSP 130

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1094708783  253 TPTASATPTASATPTASGTPTASATPTAAPKG 284
Cdd:PHA03307   131 APDLSEMLRPVGSPGPPPAASPPAAGASPAAV 162
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
174-282 4.85e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 4.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPtasATPTASATPTASATPTASATPTASATPTASATP----------TAT 243
Cdd:PRK12323   434 AAARQASARGPGGAPAPAPAPAAAPAAAARP---AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweelppefaSPA 510

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1094708783  244 PTASATPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK12323   511 PAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP 549
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 200-267 4.86e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.29  E-value: 4.86e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1094708783  200 ASATPTASATPTASATPTASATPTASATPTASATPTASATPTATP-TASATPTATPTASATPTASATPT 267
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAaAKPPEPAPAAKPPPTPVARADPR 188
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 172-324 5.04e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 44.31  E-value: 5.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASA----------------SPTASATPTASATPTASATPTASATPTASATPTASATPT 235
Cdd:PRK08691   400 AETAQTPVQTASAAAMPSEGKTAGPvsnqenndvppwedapDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADN 479

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  236 ASATPTatptaSATPTATPtASATPTASATPTASGTPTASATPTAApKGVGQGTYENDDPAVTLNGTWTKVASNQDSGGS 315
Cdd:PRK08691   480 ETDAPL-----SEVPSENP-IQATPNDEAVETETFAHEAPAEPFYG-YGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGG 552


                   ....*....
gi 1094708783  316 TGSLSTAGY 324
Cdd:PRK08691   553 ADEEAEAGG 561
PHA03247 PHA03247
large tegument protein UL36; Provisional
 173-296 5.33e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 5.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASA--TPTASATPTASATPTATPTASATP 250
Cdd:PHA03247  2570 PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHApdPPPPSPSPAANEPDPHPPPTVPPP 2649

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1094708783  251 TATPTASATPTAS--------ATPTASGTPTASATPTAAPKGVGQGTYENDDPA 296
Cdd:PHA03247  2650 ERPRDDPAPGRVSrprrarrlGRAAQASSPPQRPRRRAARPTVGSLTSLADPPP 2703
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 174-276 5.47e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 5.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTAT 253
Cdd:PHA03307   214 SASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRE 293

                           90       100
                   ....*....|....*....|...
gi 1094708783  254 PTASATPTASATPTASGTPTASA 276
Cdd:PHA03307   294 RSPSPSPSSPGSGPAPSSPRASS 316
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
172-290 5.52e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 43.88  E-value: 5.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPT-PSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:pfam05539  173 TTSKTTSWPTEVSHPTyPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPQHPPS 252

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1094708783  251 TATPTASA-------TPTASATPTASGTPTASATPTAAPKGVGQGTY 290
Cdd:pfam05539  253 TTSQDQSTtgdgqehTQRRKTPPATSNRRSPHSTATPPPTTKRQETG 299
Nucleoporin_FG2 pfam15967
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ...
 171-332 5.56e-04

Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.


Pssm-ID: 435043 [Multi-domain]  Cd Length: 586  Bit Score: 44.27  E-value: 5.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTA-----SATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTAT-- 243
Cdd:pfam15967   23 GAAAASNPGSTGgfsfgTLGAAPAATATTTTATLGLGGGLFGQKPATGFTFGTPASSTAATGPTGLTLGTPAATTAAStg 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  244 -------PTASATPTATPTASATP---------TASATPTASGTPT-----ASATPTAAPKG---------VGQGTYEND 293
Cdd:pfam15967  103 fslgfnkPAASATPFSLPASSTSGgglslgsvlTSTAAQQGATGFTlnlggTPATTTAVSTGlslgstltsLGGSLFQNT 182

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1094708783  294 DPAVTLNGTWTKVASNQDSGGSTGSLSTAGYAELSFTTS 332
Cdd:pfam15967  183 NSTGLGQTTLGLTLLATSTAPVSAPAASEGLGGLDFSTS 221
PHA03247 PHA03247
large tegument protein UL36; Provisional
 170-282 5.89e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 5.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPT----PSATPTASASPTAS---ATPTASATPTASATPTASATPTASATPTASATPTASATPTA 242
Cdd:PHA03247  2582 VTSRARRPDAPPQSARPRapvdDRGDPRGPAPPSPLppdTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRV 2661

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1094708783  243 TPTASATPTATPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PHA03247  2662 SRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADP 2701
PHA03247 PHA03247
large tegument protein UL36; Provisional
 170-297 5.89e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 5.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTAsatptasatPTASATPTASATPTATPTASAT 249
Cdd:PHA03247  2543 LASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDA---------PPQSARPRAPVDDRGDPRGPAP 2613

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1094708783  250 PTATPTASATPTAsatPTASGTPTASATPTAAPKGVGQGTYENDDPAV 297
Cdd:PHA03247  2614 PSPLPPDTHAPDP---PPPSPSPAANEPDPHPPPTVPPPERPRDDPAP 2658
motB PRK12799
flagellar motor protein MotB; Reviewed
 169-264 6.14e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 43.94  E-value: 6.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPsptasATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASA 248
Cdd:PRK12799   328 VIPSSVTTQS-----ATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTS 402

                           90
                   ....*....|....*.
gi 1094708783  249 TPtATPTASATPTASA 264
Cdd:PRK12799   403 LP-AAPASNIPVSPTS 417
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 172-280 6.16e-04

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 42.25  E-value: 6.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSA-TPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:pfam09595   64 HHENPPLNEAAKEAPSESEdAPDIDPNNQHPSQDRSEAPPLEPAAKTKPSEHEPANPPDASNRLSPPDASTAAIREARTF 143

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1094708783  251 TAT-----PTASATPTASATPTASGTPTASATPTA 280
Cdd:pfam09595  144 RKPstgkrNNPSSAQSDQSPPRANHEAIGRANPFA 178
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
169-283 6.46e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.00  E-value: 6.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASA 248
Cdd:PRK14971   383 FTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSK 462

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1094708783  249 TPTATPtasATPTASATPTASGTPTASATPTAAPK 283
Cdd:PRK14971   463 VSSLGP---STLRPIQEKAEQATGNIKEAPTGTQK 494
PRK12495 PRK12495
hypothetical protein; Provisional
 200-293 6.85e-04

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 42.55  E-value: 6.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  200 ASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATP-TASGTPTASATP 278
Cdd:PRK12495    80 DGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTAqPATPDERRSPRQ 159

                           90
                   ....*....|....*
gi 1094708783  279 TAAPKGVGQGTYEND 293
Cdd:PRK12495   160 RPPVSGEPPTPSTPD 174
PRK12495 PRK12495
hypothetical protein; Provisional
 206-335 7.04e-04

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 42.55  E-value: 7.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  206 ASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTA--TPTASATPTASATPTASGTPtASATPTAAPK 283
Cdd:PRK12495    80 DGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAatDPPATAAARDGPTPDPTAQP-ATPDERRSPR 158

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1094708783  284 GVGQGTYENDDPAVTLNGTWTKVASNQDSGGSTgslsTAGYAELSFTTSGIR 335
Cdd:PRK12495   159 QRPPVSGEPPTPSTPDAHVAGTLQAARESLVET----LARFARRAAATDDPR 206
DUF3729 pfam12526
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ...
 172-254 7.29e-04

Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.


Pssm-ID: 372164 [Multi-domain]  Cd Length: 115  Bit Score: 40.45  E-value: 7.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATptaTPTASATPT 251
Cdd:pfam12526   23 SGFSSCFSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPEPDLVPPVTGPAGPPSPL---APPAPAQKP 99


                   ...
gi 1094708783  252 ATP 254
Cdd:pfam12526  100 PLP 102
PHA03247 PHA03247
large tegument protein UL36; Provisional
 171-270 7.84e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 7.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:PHA03247  2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

                           90       100
                   ....*....|....*....|
gi 1094708783  251 TATPTASATPTASATPTASG 270
Cdd:PHA03247  2946 TTDPAGAGEPSGAVPQPWLG 2965
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 208-327 8.19e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 43.78  E-value: 8.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  208 ATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASGTPTASATPTAAP--KGV 285
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASgkPGV 461

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1094708783  286 GQGTYENDDPAVTLNGTWTKVASNQDSgGSTGSLSTAGYAEL 327
Cdd:PRK14954   462 DLGSWQGKFMNFTRNGSRKQPVQASSS-DAAQTGVFEGVAEL 502
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 53-277 8.26e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 43.75  E-value: 8.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   53 TSTAISWTGTWSTATSTSDSDGSYATLNTDGNAQL--TFTGTGITWNTRVNSYSGIADVYL------DGVKKATVDLYSA 124
Cdd:pfam05109  430 TSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTgpTVSTADVTSPTPAGTTSGASPVTPspsprdNGTESKAPDMTSP 509

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  125 TSKTKQAVYSVSGLTAGthvlkiVRTGTKNDSSSGRNVTIDYFDVVGSTASATPSPTASATPTPSAT-PT-ASASPT-AS 201
Cdd:pfam05109  510 TSAVTTPTPNATSPTPA------VTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATiPTlGKTSPTsAV 583

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1094708783  202 ATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASGTPTASAT 277
Cdd:pfam05109  584 TTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPST 659
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 10-1055 1.01e-03

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 43.60  E-value: 1.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   10 TIPAAARIGATSVLAAFAVTAGLLVPVQAHAADSGVSAGRYENTSTAISWTGTWSTATSTSDSDGsyATLNTDGNAQLTF 89
Cdd:COG3210    624 GANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTG--TTLNAATGGTLNN 701

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783   90 TGTGITWNTRVNSYSGIADVyLDGVKKATVDLYSATSKTKQAVYSVSGLTAGThVLKIVRTGTKNDSSSGRNVTIDYFD- 168
Cdd:COG3210    702 AGNTLTISTGSITVTGQIGA-LANANGDTVTFGNLGTGATLTLNAGVTITSGN-AGTLSIGLTANTTASGTTLTLANANg 779

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASA 248
Cdd:COG3210    780 NTSAGATLDNAGAEISIDITADGTITAAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASG 859

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  249 TPTATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPAVTLNGTWTKVASNQDSGGSTGSLSTAGYAELS 328
Cdd:COG3210    860 GGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAG 939

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  329 FTTSGIRWITRYNTYSGIADVYLDGTKVRTVDLYSATTKTQQVAYEVTGLPETSHTIRI---VRTGTKNASSSSPNIMLD 405
Cdd:COG3210    940 NGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVagnSGTTASTTGGSGAIVAGG 1019

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  406 AFVAPDIHAPLAPTGLTATVDGQDIDLAWAANAETDVKAYKVYRREGTSTTRTLIATTTADVRTFTDTARMPGATYGYDV 485
Cdd:COG3210   1020 NGVTGTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITN 1099

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  486 VAVDTSDNASASSAAASATMPIDVQPAGVYEDGDAAVTLYGPWSTVTSNMDSGGSYATLNAAGYAEVSFSTSGIRWISRL 565
Cdd:COG3210   1100 GGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGS 1179

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  566 NSYSGIADVYLDGVKVKTVDLYSSTTKYQQVAYEVKGLPETTHTLRVVRTGTKNASSTSTAIVLDSFVAPDIYPPAAPTA 645
Cdd:COG3210   1180 AINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTG 1259

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  646 VTTTPGRGTVTLAWAANTEPDVVGYRVYRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVTALDKMGNESPVSAAV 725
Cdd:COG3210   1260 ATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAG 1339

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  726 DATVPMKALPAGVYEDDDTDDVLLKGSWNKTASTGAGTDSGSSFSTLGDTGYAEVSFATSGIRWLArTNSTSGLADVYLD 805
Cdd:COG3210   1340 GGTINTTAANTGLNGGNGATDSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVT-TSGTGVGNNGGVS 1418

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  806 GVKVKTVDLYSSTTKFSQNVYEATGLSETGHTLRVVRTGNKNADSAGRNITLDAFVAPDIYAPAAPTSVQASGIRTGAKL 885
Cdd:COG3210   1419 GTTVAGTTGSSATTGTGGTGNTTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGAT 1498

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  886 TWTKSPDADVASYRIFRRATGTTTDVLVGTTDAATTSFANVGLADGGSYSWSVVARDTWGNDSAASLPASFTNGGDPYAS 965
Cdd:COG3210   1499 ASNGGTSTGAGGTAGGTTAEVAKASLEGGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGGTDGAGGDT 1578

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  966 FPQRYATCPTATVTVSTRAQLLTAVSAAKAGTVIKLNPGTYGANIDVTTVATPDKPLWICGPRTAVIDNADITKGYGFRV 1045
Cdd:COG3210   1579 GGADDTGAQAPTAGNTATLTLSLAEGTNAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGNTTNGTTLS 1658

                         1050
                   ....*....|
gi 1094708783 1046 TGASNVVIAG 1055
Cdd:COG3210   1659 GAVNGAGNGW 1668
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 172-321 1.06e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.13  E-value: 1.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPtASASPTASATPTASATPTASATPTASATPtASATPTASAtPTASATPTaTPTASATPT 251
Cdd:PRK14959   367 PVESLRPSGGGASAPSGSAAE-GPASGGAATIPTPGTQGPQGTAPAAGMTP-SSAAPATPA-PSAAPSPR-VPWDDAPPA 442

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1094708783  252 ATPTASATPTASATPTASGTPTASATpTAAPKGVGQGTYENDDPAVTLNG---TWTK-VASNQDSGGSTGSLST 321
Cdd:PRK14959   443 PPRSGIPPRPAPRMPEASPVPGAPDS-VASASDAPPTLGDPSDTAEHTPSgprTWDGfLEFCQGRNGQGGRLAT 515
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 178-283 1.10e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 42.83  E-value: 1.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  178 PSPTASATPTPSATPTASASPTASATPTASATPTASATPTASaTPTASATPTASATP-TASATPTATPTASATPTATPTA 256
Cdd:NF040712   217 VEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDE-PVGPGAAPAAEPDEaTRDAGEPPAPGAAETPEAAEPP 295

                           90       100
                   ....*....|....*....|....*...
gi 1094708783  257 SATPTASATPTA-SGTPTASATPTAAPK 283
Cdd:NF040712   296 APAPAAPAAPAApEAEEPARPEPPPAPK 323
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 192-295 1.13e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.99  E-value: 1.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  192 PTASASPTA--SATPTASATPTASATPTaSATPTASATPTASATPTASA-TPTATPTASATPTATPTASATPTASATPTA 268
Cdd:PLN03209   449 PPTSPSPTAptGVSPSVSSTSSVPAVPD-TAPATAATDAAAPPPANMRPlSPYAVYDDLKPPTSPSPAAPVGKVAPSSTN 527

                           90       100
                   ....*....|....*....|....*..
gi 1094708783  269 SGTPTASATPTAAPKGVGQGTYENDDP 295
Cdd:PLN03209   528 EVVKVGNSAPPTALADEQHHAQPKPRP 554
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 210-279 1.18e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.75  E-value: 1.18e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  210 PTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASaTPTASATPTASGTPTASATPT 279
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAK-PPEPAPAAKPPPTPVARADPR 188
PRK13733 PRK13733
conjugal transfer protein TraV; Provisional
 174-253 1.19e-03

conjugal transfer protein TraV; Provisional


Pssm-ID: 184285  Cd Length: 171  Bit Score: 41.30  E-value: 1.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASAtptASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTAT 253
Cdd:PRK13733    59 AASLPRLAEGNFRTMPVQTVTATTPSGSR---PAVTATPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQT 135
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 174-276 1.23e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 42.45  E-value: 1.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASA---TPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:NF040712   221 PAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPedePVGPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPA 300

                           90       100
                   ....*....|....*....|....*.
gi 1094708783  251 TATPTASATPTASATPTASGTPTASA 276
Cdd:NF040712   301 APAAPAAPEAEEPARPEPPPAPKPKR 326
PHA03193 PHA03193
tegument protein VP11/12; Provisional
 179-299 1.52e-03

tegument protein VP11/12; Provisional


Pssm-ID: 177555  Cd Length: 594  Bit Score: 42.78  E-value: 1.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  179 SPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTasatPTASATPTATPTASATPTATPTASA 258
Cdd:PHA03193   441 SPFQRKRAMPEDGGEIHEALANNGQAIFPECFSGDLPPIAQALLSADELPN----DTTASTSNEMKGDAECPAAQDAAAI 516

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1094708783  259 TPTASATP---TASGTPTASATPTAAPKGVGQGTYENDDPAVTL 299
Cdd:PHA03193   517 LPASFQIEnggAADGSGLAIPAAMCDATAVESPSTVAETPPERL 560
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 168-287 1.53e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.85  E-value: 1.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  168 DVVGSTASATPSPTASATPTPSATPTASASPT----------ASATPTASATPTASATPTASATPTASATPTASATPTAS 237
Cdd:PHA03307   192 EPPPSTPPAAASPRPPRRSSPISASASSPAPApgrsaaddagASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWE 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1094708783  238 ATPTATPTASATPTATPTASATPTASATPTASGTPTASATPTAAPKGVGQ 287
Cdd:PHA03307   272 ASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSS 321
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 204-273 1.76e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.36  E-value: 1.76e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  204 PTASATPTASATPTASATPTASATPTASATPTASATPTATPTASAtPTATPTASATPTASATPTASGTPT 273
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPA-AAKPPEPAPAAKPPPTPVARADPR 188
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
171-286 1.81e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 42.10  E-value: 1.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASAT----PSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPtaSATPTASATPTASATPTATPTA 246
Cdd:PRK12373   208 ASKALAEdigdTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTP--ATAPKAAAKNAKAPEAQPVSGT 285

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1094708783  247 SATPTATPTASATPTASATPTASGTP-TASATPTAAP------KGVG 286
Cdd:PRK12373   286 AAAEPAPKEAAKAAAAAAKPALEDKPrPLGIARPGGAddlkliSGVG 332
SP4_N cd22536
N-terminal domain of transcription factor Specificity Protein (SP) 4; Specificity Proteins ...
 188-270 1.88e-03

N-terminal domain of transcription factor Specificity Protein (SP) 4; Specificity Proteins (SPs) are transcription factors that are involved in many cellular processes, including cell differentiation, cell growth, apoptosis, immune responses, response to DNA damage, and chromatin remodeling. Human SP4 is a risk gene of multiple psychiatric disorders including schizophrenia, bipolar disorder, and major depression. SP4 belongs to a family of proteins, called the SP/Kruppel or Krueppel-like Factor (KLF) family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. SP factors preferentially bind GC boxes, while KLFs bind CACCC boxes. Another characteristic hallmark of SP factors is the presence of the Buttonhead (BTD) box CXCPXC, just N-terminal to the zinc fingers. The function of the BTD box is unknown, but it is thought to play an important physiological role. Another feature of most SP factors is the presence of a conserved amino acid stretch, the so-called SP box, located close to the N-terminus. SP factors may be separated into three groups based on their domain architecture and the similarity of their N-terminal transactivation domains: SP1-4, SP5, and SP6-9. The transactivation domains between the three groups are not homologous to one another. SP1-4 have similar N-terminal transactivation domains characterized by glutamine-rich regions, which, in most cases, have adjacent serine/threonine-rich regions. This model represents the N-terminal domain of SP4.


Pssm-ID: 411773 [Multi-domain]  Cd Length: 623  Bit Score: 42.60  E-value: 1.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  188 PSATPTASASPTASATPTASATPTA--SATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASAT 265
Cdd:cd22536    265 PSDGGVSNGNQLVSTPITTASVSTMpeSPSSSTTCTTTASTSLTSSDTLVSSAETGQYASTAASSERTEEEPQTSAAESE 344


                   ....*
gi 1094708783  266 PTASG 270
Cdd:cd22536    345 AQSSS 349
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 178-299 1.97e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.78  E-value: 1.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  178 PSP-TASATPTPSATPTASASPTASATPTA--SATPTASATPTASATP---TASATPTASATPTASATPTATPTASATPT 251
Cdd:NF033875    60 PDPqSGSETPKTAVSEEATVQKDTTSQPTKveEVASEKNGAEQSSATPndtTNAQQPTVGAEKSAQEQPVVSPETTNEPL 139

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1094708783  252 ATPTASAtPTASATPTASGTPTASATPTaAPKGVGQGtyeNDDPAVTL 299
Cdd:NF033875   140 GQPTEVA-PAENEANKSTSIPKEFETPD-VDKAVDEA---KKDPNITV 182
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
175-246 1.98e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.68  E-value: 1.98e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1094708783  175 SATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASAtPTASATPtASATPTATPTA 246
Cdd:COG5373     34 EAELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPA-PAAAAPP-AEAEPAAAPAA 103
PRK13875 PRK13875
conjugal transfer protein TrbL; Provisional
 171-266 2.11e-03

conjugal transfer protein TrbL; Provisional


Pssm-ID: 237537  Cd Length: 440  Bit Score: 42.20  E-value: 2.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:PRK13875   304 GGAAAAARGGAAAAGGASSAYSAGAAGGSGAAGVAAGLGGVARAGASAAASPLRRAASRAAESMKSSFRAGARSTGGGAG 383

                           90
                   ....*....|....*.
gi 1094708783  251 TATPTASATPTASATP 266
Cdd:PRK13875   384 GAAAAAAAGAAAAGPP 399
fn3 pfam00041
Fibronectin type III domain;
639-717 2.52e-03

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 38.16  E-value: 2.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  639 PPAAPTAVTTTPGrgTVTLAWAANTEP--DVVGYRV-YRSQGTSAPVAATTAPVTAPTFTDDGLQPAATYRYTVTALDKM 715
Cdd:pfam00041    2 APSNLTVTDVTST--SLTVSWTPPPDGngPITGYEVeYRPKNSGEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGG 79


                   ..
gi 1094708783  716 GN 717
Cdd:pfam00041   80 GE 81
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 868-957 2.58e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 38.25  E-value: 2.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  868 PAAPTSVQASGI-RTGAKLTWTKSPD--ADVASYRIFRRATGTTTDVLVGTTDAATTSFANVGLADGGSYSWSVVARDTW 944
Cdd:cd00063      1 PSPPTNLRVTDVtSTSVTLSWTPPEDdgGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1094708783  945 GnDSAASLPASFT 957
Cdd:cd00063     81 G-ESPPSESVTVT 92
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 168-252 2.88e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.91  E-value: 2.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  168 DVVGSTASATPSPTASATPTPSATPTASAS-PTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTA 246
Cdd:NF041121    17 RAAAPPSPEGPAPTAASQPATPPPPAAPPSpPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVPAP 96


                   ....*.
gi 1094708783  247 SATPTA 252
Cdd:NF041121    97 PALPNP 102
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 169-252 2.95e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 41.72  E-value: 2.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  169 VVGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASA 248
Cdd:PRK14950   379 VRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALI 458


                   ....
gi 1094708783  249 TPTA 252
Cdd:PRK14950   459 ADGD 462
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 117-330 3.05e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.83  E-value: 3.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  117 ATVDLYSATSKTKQAVYSVSGLTAGTHVlkiVRTGTKNDSSSGRNVTIDYFDVVGST---ASATPSPTASATPTPSATPT 193
Cdd:pfam05109  555 ATSPTPAVTTPTPNATIPTLGKTSPTSA---VTTPTPNATSPTVGETSPQANTTNHTlggTSSTPVVTSPPKNATSAVTT 631

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  194 ASASPTASATPTASATPTA---SATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASG 270
Cdd:pfam05109  632 GQHNITSSSTSSMSLRPSSiseTLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASG 711

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1094708783  271 TPTASATPTAAPKGVGQGT-YENDDPAVTLNGTWTKVASNQDSGG----STGSLSTAGYAELSFT 330
Cdd:pfam05109  712 PGNSSTSTKPGEVNVTKGTpPKNATSPQAPSGQKTAVPTVTSTGGkansTTGGKHTTGHGARTST 776
PRK12495 PRK12495
hypothetical protein; Provisional
 192-282 3.32e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 40.62  E-value: 3.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  192 PTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASGT 271
Cdd:PRK12495    62 PTCQQPVTEDGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPT 141

                           90
                   ....*....|.
gi 1094708783  272 PTASATPTAAP 282
Cdd:PRK12495   142 PDPTAQPATPD 152
PHA01929 PHA01929
putative scaffolding protein
 180-297 3.89e-03

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 40.81  E-value: 3.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  180 PTASATPTPSATPTASASPTASatPTASATPTASATPTASATPTASATPtasaTPTASATPTATPTASATPTAtptASAT 259
Cdd:PHA01929    13 AGLVANVPPAAAPTPQPNPVIQ--PQAPVQPGQPGAPQQLAIPTQQPQP----VPTSAMTPHVVQQAPAQPAP---AAPP 83

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1094708783  260 PTASATPTASGTPTASA-TPTAAPKGVGQGTYEND---DPAV 297
Cdd:PHA01929    84 AAGAALPEALEVPPPPAfTPNGEIVGTLAGNLEGDpqlAPSV 125
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 1041-1150 3.93e-03

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 40.09  E-value: 3.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783 1041 YGFRVTGASNVVIAGMTVRNVQKGVAVLYSKAVTVADLRVEKIGDEAIHLKNQtTDSTVIGNSISTtglnspNYGEGVYI 1120
Cdd:pfam05048   64 YGIHLMNSNDNTISDNVFSGNTAGIALMSSSNNTLENNTISGNTNYGILLSDS-SNNTISNNTISN------NNGKGIFL 136

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1094708783 1121 -----GTAEGNWCLYNDC---NADTSDRNLVAFNTISG 1150
Cdd:pfam05048  137 ynsdyNTITGNRITSNGIgihFLAGSNGNTIYNNYFIN 174
PHA03247 PHA03247
large tegument protein UL36; Provisional
 172-264 4.01e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 4.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPT-ASATP 250
Cdd:PHA03247  2913 APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSReAPASS 2992

                           90
                   ....*....|....
gi 1094708783  251 TATPTASATPTASA 264
Cdd:PHA03247  2993 TPPLTGHSLSRVSS 3006
PHA01929 PHA01929
putative scaffolding protein
 185-282 4.06e-03

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 40.81  E-value: 4.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  185 TPTPSATPTASASPTASATPTASATPTAS--ATPTASATPTASATPTASATPTASatPTATPTASATPTATPTASATPTA 262
Cdd:PHA01929     2 TQNEQQLPPGLAGLVANVPPAAAPTPQPNpvIQPQAPVQPGQPGAPQQLAIPTQQ--PQPVPTSAMTPHVVQQAPAQPAP 79

                           90       100
                   ....*....|....*....|
gi 1094708783  263 SATPTASGTPTASATPTAAP 282
Cdd:PHA01929    80 AAPPAAGAALPEALEVPPPP 99
PTZ00429 PTZ00429
beta-adaptin; Provisional
 176-293 4.33e-03

beta-adaptin; Provisional


Pssm-ID: 240415 [Multi-domain]  Cd Length: 746  Bit Score: 41.46  E-value: 4.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  176 ATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTAS-ATP-----TASATPTASATPT--ATPTAS 247
Cdd:PTZ00429   618 AVELPSTPSMGTQDGSPAPSAAPAGYDIFEFAGDGTGAPHPVASGSNGAQhADPlgdlfSGLPSTVGASSPAfqAASGSQ 697

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1094708783  248 ATPTATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYEND 293
Cdd:PTZ00429   698 APASPPTAASAIEDLFANGMGSGSQTVPLPISAAPQSADRDTQLND 743
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 172-233 4.37e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.03  E-value: 4.37e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASAT 233
Cdd:TIGR00601   91 PTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAASTLVV 152
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 168-332 4.83e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.31  E-value: 4.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  168 DVVGSTASATPSPTASATPTPSATPTASASPTASAT--PTASATPTASATPTASATPTASATPTASATP----TASATPT 241
Cdd:PHA03307   174 LPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRssPISASASSPAPAPGRSAADDAGASSSDSSSSessgCGWGPEN 253

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  242 ATPTASATPTATPTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPAVTLNGTWTKVASNQDSGGSTGSLST 321
Cdd:PHA03307   254 ECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333

                          170
                   ....*....|.
gi 1094708783  322 AGYAELSFTTS 332
Cdd:PHA03307   334 ESSRGAAVSPG 344
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
172-296 4.86e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 41.13  E-value: 4.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTA-------------------SATPTASATPTASATPTASATPTASA 232
Cdd:PRK12727    63 PATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQrqrvasaaedmiaamalrqPVSVPRQAPAAAPVRAASIPSPAAQA 142

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1094708783  233 TPTASATPTATPTASATPT-------ATPTASATPTASATPTASGTPT---ASATPTAAPKGVGQGTYENDDPA 296
Cdd:PRK12727   143 LAHAAAVRTAPRQEHALSAvpeqlfaDFLTTAPVPRAPVQAPVVAAPApvpAIAAALAAHAAYAQDDDEQLDDD 216
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
170-264 4.96e-03

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 40.93  E-value: 4.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASAT 249
Cdd:COG3170    199 AGAVLRVPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAPPAAAAAAGPVPAAAEDTLSPEVTAA 278

                           90
                   ....*....|....*
gi 1094708783  250 pTATPTASATPTASA 264
Cdd:COG3170    279 -AAAEEADALPEAAA 292
Nucleoporin_FG2 pfam15967
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ...
 171-289 5.16e-03

Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.


Pssm-ID: 435043 [Multi-domain]  Cd Length: 586  Bit Score: 41.19  E-value: 5.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASAT-PTASATPTASATPTASATPTATPTASAT 249
Cdd:pfam15967   12 STATAGGGFSFGAAAASNPGSTGGFSFGTLGAAPAATATTTTATLGLGGGLfGQKPATGFTFGTPASSTAATGPTGLTLG 91

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1094708783  250 PTATPTASAT--PTASATPTASGTPTASATPTAAPKGVGQGT 289
Cdd:pfam15967   92 TPAATTAASTgfSLGFNKPAASATPFSLPASSTSGGGLSLGS 133
PRK12495 PRK12495
hypothetical protein; Provisional
 204-295 5.22e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 39.85  E-value: 5.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  204 PTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTASGTPTASATPTAAPK 283
Cdd:PRK12495    62 PTCQQPVTEDGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPT 141

                           90
                   ....*....|..
gi 1094708783  284 GVGQGTYENDDP 295
Cdd:PRK12495   142 PDPTAQPATPDE 153
PHA03292 PHA03292
envelope glycoprotein I; Provisional
 173-256 5.78e-03

envelope glycoprotein I; Provisional


Pssm-ID: 177577  Cd Length: 413  Bit Score: 40.71  E-value: 5.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  173 TASATPSPTASATPTPSATPTASASPTASATPTASATP----------------------TASATPTASATPTASATPTA 230
Cdd:PHA03292   208 SMSSQPAGAATATPTPTLDTGLTTVAPPNETVVTGETAllchwfqpstrvptlylhllgtTGNLTEDVLLTEDSEILRTP 287

                           90       100
                   ....*....|....*....|....*.
gi 1094708783  231 SATPTASATPTATPTASATPTATPTA 256
Cdd:PHA03292   288 PPDPSSSRSPGAGDDFKQTNSTSPKR 313
KLF9_13_N-like cd21975
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ...
 177-285 5.88e-03

Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.


Pssm-ID: 409240 [Multi-domain]  Cd Length: 163  Bit Score: 38.90  E-value: 5.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  177 TPSPTASATPTPSATPTASASPTASATPTASAtPTASATPTASATPTASATPTASATPTASATPTATPTASATPTATPTA 256
Cdd:cd21975     48 PPGPAWKPDGADSPGLVTAAPHLLAANVLAPL-RGPSVEGSSLESGDADMGSDSDVAPASGAAASTSPESSSDAASSPSP 126

                           90       100
                   ....*....|....*....|....*....
gi 1094708783  257 SATPTASATPTASGTPTASATPTAAPKGV 285
Cdd:cd21975    127 LSLLHPGEAGLEPERPRPRVRRGVRRRGV 155
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 160-316 6.05e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 40.71  E-value: 6.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  160 RNVTIDYFDVVGSTASATPSPTASATPTPSATPT--ASASPTASATPTASATP--TASATPTASATPTASATPTASATPT 235
Cdd:pfam17823   40 QNASGDAVPRADNKSSEQ*NFCAATAAPAPVTLTkgTSAAHLNSTEVTAEHTPhgTDLSEPATREGAADGAASRALAAAA 119

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  236 ASATPTATPTASATPTATPT-ASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDDPAVTLNGTWTKVASNQDSGG 314
Cdd:pfam17823  120 SSSPSSAAQSLPAAIAALPSeAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAA 199


                   ..
gi 1094708783  315 ST 316
Cdd:pfam17823  200 SS 201
SP4_N cd22536
N-terminal domain of transcription factor Specificity Protein (SP) 4; Specificity Proteins ...
 171-257 6.51e-03

N-terminal domain of transcription factor Specificity Protein (SP) 4; Specificity Proteins (SPs) are transcription factors that are involved in many cellular processes, including cell differentiation, cell growth, apoptosis, immune responses, response to DNA damage, and chromatin remodeling. Human SP4 is a risk gene of multiple psychiatric disorders including schizophrenia, bipolar disorder, and major depression. SP4 belongs to a family of proteins, called the SP/Kruppel or Krueppel-like Factor (KLF) family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. SP factors preferentially bind GC boxes, while KLFs bind CACCC boxes. Another characteristic hallmark of SP factors is the presence of the Buttonhead (BTD) box CXCPXC, just N-terminal to the zinc fingers. The function of the BTD box is unknown, but it is thought to play an important physiological role. Another feature of most SP factors is the presence of a conserved amino acid stretch, the so-called SP box, located close to the N-terminus. SP factors may be separated into three groups based on their domain architecture and the similarity of their N-terminal transactivation domains: SP1-4, SP5, and SP6-9. The transactivation domains between the three groups are not homologous to one another. SP1-4 have similar N-terminal transactivation domains characterized by glutamine-rich regions, which, in most cases, have adjacent serine/threonine-rich regions. This model represents the N-terminal domain of SP4.


Pssm-ID: 411773 [Multi-domain]  Cd Length: 623  Bit Score: 40.67  E-value: 6.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSatptaSASPTASATPTASATPTASATpTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:cd22536    273 GNQLVSTPITTASVSTMPE-----SPSSSTTCTTTASTSLTSSDT-LVSSAETGQYASTAASSERTEEEPQTSAAESEAQ 346


                   ....*..
gi 1094708783  251 TATPTAS 257
Cdd:cd22536    347 SSSQLQS 353
motB PRK05996
MotB family protein;
170-285 7.07e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 40.45  E-value: 7.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPTASAT--PTASATPTASATPT-ASATPTASATPTASATPTASATPTATPTA 246
Cdd:PRK05996   190 VEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQaaPLPQAQPKKAATEEeLIADAKKAATGEPAANAAKAAKPEPMPDD 269

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1094708783  247 SATPTATPTASATPTASATptaSGTPTASATPTAAPKGV 285
Cdd:PRK05996   270 QQKEAEQLQAAIAQAIGGV---AGKLAEGVTVTPVEGGL 305
PHA03255 PHA03255
BDLF3; Provisional
 193-326 7.39e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 39.50  E-value: 7.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  193 TASASPTASATPTASATPTASATPTASATPT---ASATPTASATPTASATPTATPTASATPTATPTASATPTASATPTAS 269
Cdd:PHA03255    25 TSSGSSTASAGNVTGTTAVTTPSPSASGPSTnqsTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVTT 104

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1094708783  270 GTPTASATPTAAPKGVGQGTYENDDPAVTLNGTWTKVASNQDSGGSTGSLSTAGYAE 326
Cdd:PHA03255   105 KVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTSNAT 161
PRK13914 PRK13914
invasion associated endopeptidase;
182-334 7.51e-03

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 40.56  E-value: 7.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  182 ASATPTPSATPTASASPTASATPTASATPTASATPTASATP----TASATPTASATPTASATPTATPT----ASATPTAT 253
Cdd:PRK13914   242 AIKQTANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTekkeTTTQQQTAPKAPTEAAKPAPAPStntnANKTNTNT 321

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  254 PTASATPTASATPTASGTPTASATPTAAPKGVGQGTYENDD--PAVTLNGTWTKVASNQDSGGSTG--SLSTAGYAELSF 329
Cdd:PRK13914   322 NTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSnsSASAIIAEAQKHLGKAYSWGGNGptTFDCSGYTKYVF 401


                   ....*
gi 1094708783  330 TTSGI 334
Cdd:PRK13914   402 AKAGI 406
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
174-282 7.54e-03

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 40.55  E-value: 7.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  174 ASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTAS---ATPTASATPTASATPTA-----SATPTATPT 245
Cdd:COG3170    231 AAYRARLAAAVEPAPAAAAPAAPPAAAAAAGPVPAAAEDTLSPEVTaaaAAEEADALPEAAAELAErlaalEAQLAELQR 310

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1094708783  246 ASATPTATPTASATPTASATPTASGT---PTASATPTAAP 282
Cdd:COG3170    311 LLALKNPAPAAAVSAPAAAAAAATVEaaaPAAAAQPAAAA 350
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 180-289 7.59e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 40.37  E-value: 7.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  180 PTASATPTPSATPTA--SASPTASATPTASATPT-ASATPTASATPTASATPT-ASATPTASA--TPTATPTASATPTAT 253
Cdd:PHA03264   255 PPYFEESKGYEPPPApsGGSPAPPGDDRPEAKPEpGPVEDGAPGRETGGEGEGpEPAGRDGAAggEPKPGPPRPAPDADR 334

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1094708783  254 PtaSATPTASATPTASGTPTASATPTAAPKGVGQGT 289
Cdd:PHA03264   335 P--EGWPSLEAITFPPPTPATPAVPRARPVIVGTGI 368
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 170-254 7.61e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 40.14  E-value: 7.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  170 VGSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASAT 249
Cdd:NF040712   250 AGVEQPEDEPVGPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRRRR 329


                   ....*
gi 1094708783  250 PTATP 254
Cdd:NF040712   330 RASVP 334
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 171-281 8.60e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 8.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  171 GSTASATPSPTASATPTPSATPTASASPTASATPTASATPTASATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:PRK07764   688 AAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPA 767

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1094708783  251 TATPTASATPTASATPTASGTPTASATPTAA 281
Cdd:PRK07764   768 AAPAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798
PHA03255 PHA03255
BDLF3; Provisional
 172-281 8.93e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 39.50  E-value: 8.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  172 STASATPSPTASATPTPSATPTASASPTASATPTASATPTAS-ATPTASATPTASATPTASATPTASATPTATPTASATP 250
Cdd:PHA03255    32 ASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAIlSTNTTTVTSTGTTVTPVPTTSNASTINVTTKVTAQNI 111

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1094708783  251 TATPTASAT-PTASATPTASGTPTASATPTAA 281
Cdd:PHA03255   112 TATEAGTGTsTGVTSNVTTRSSSTTSATTRIT 143
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
156-282 9.51e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 9.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1094708783  156 SSSGRNVTIDYFDVVGSTASATPSPTASATP-TPSATPTAsASPTASATPTASATP---TASATPTASATPTASATPTAS 231
Cdd:PRK07003   500 SAATPAAVPDARAPAAASREDAPAAAAPPAPeARPPTPAA-AAPAARAGGAAAALDvlrNAGMRVSSDRGARAAAAAKPA 578

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1094708783  232 ATPTASATPTATPTASATPtaTPTASATPTASATPTASGTPTASATPTAAP 282
Cdd:PRK07003   579 AAPAAAPKPAAPRVAVQVP--TPRARAATGDAPPNGAARAEQAAESRGAPP 627
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH