NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1115232151|gb|APM87113|]
View 

NADH dehydrogenase subunit 2, partial (mitochondrion) [Gymnura cf. poecilura Veraval ND2-2]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-199 2.42e-77

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00135:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 347  Bit Score: 235.85  E-value: 2.42e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLlNPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSS 80
Cdd:MTH00135  135 KLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSS 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  81 MFLILNNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYL 160
Cdd:MTH00135  214 AFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYL 293

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1115232151 161 RLCYAITLTLSPSPTTTPSSWRTKTTQPNLTLALTTSMA 199
Cdd:MTH00135  294 RLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAISTTAT 332
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-199 2.42e-77

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 235.85  E-value: 2.42e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLlNPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSS 80
Cdd:MTH00135  135 KLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSS 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  81 MFLILNNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYL 160
Cdd:MTH00135  214 AFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYL 293

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1115232151 161 RLCYAITLTLSPSPTTTPSSWRTKTTQPNLTLALTTSMA 199
Cdd:MTH00135  294 RLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAISTTAT 332
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 18-166 2.54e-11

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 62.09  E-value: 2.54e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  18 TLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYII----MTSSMFL----ILNNNN 89
Cdd:COG0651   273 TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLaagaIERATG 352

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1115232151  90 TTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYLRLCYAI 166
Cdd:COG0651   353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-162 1.36e-09

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 56.88  E-value: 1.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLL-------NPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGW-MVTILCYSPNL---ALL 69
Cdd:TIGR01770 246 KIAIFAVFLRLFLYIlfgfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLF 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  70 NLTVYIIMTSSMFLIL------NNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFI 143
Cdd:TIGR01770 326 YIFIYALMSLGAFGVLsllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYW 405

                         170
                  ....*....|....*....
gi 1115232151 144 PATIMALATLLSLFFYLRL 162
Cdd:TIGR01770 406 LAVIAVLTSVIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-134 4.98e-09

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 55.01  E-value: 4.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  19 LLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTIL----CYSPNLALLNLTVYIIMTSSMFLILNN-----NN 89
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVH 228

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1115232151  90 TTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQ 134
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-199 2.42e-77

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 235.85  E-value: 2.42e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLlNPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSS 80
Cdd:MTH00135  135 KLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSS 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  81 MFLILNNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYL 160
Cdd:MTH00135  214 AFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYL 293

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1115232151 161 RLCYAITLTLSPSPTTTPSSWRTKTTQPNLTLALTTSMA 199
Cdd:MTH00135  294 RLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAISTTAT 332
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-199 1.25e-63

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 200.53  E-value: 1.25e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSS 80
Cdd:MTH00070  135 KLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSS 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  81 MFLILNNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYL 160
Cdd:MTH00070  215 MFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYL 294

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1115232151 161 RLCYAITLTLSPSPTTTPSSWRTKtTQPNLTLALTTSMA 199
Cdd:MTH00070  295 RLSYAMSLTTSPNTSNSKLYWRFK-NKTNNLLSLTIILS 332
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-198 1.63e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 192.75  E-value: 1.63e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSS 80
Cdd:MTH00105  135 KLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLT 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  81 MFLILNNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYL 160
Cdd:MTH00105  215 MFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYM 294

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1115232151 161 RLCYAITLTLSPSPTTTPSSWRTKTTQPNLTLALTTSM 198
Cdd:MTH00105  295 RLIYSTSLTMFPSTNNMKMKWQFENTKPMTLLPTLIIL 332
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-200 8.19e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 183.10  E-value: 8.19e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSS 80
Cdd:MTH00112  135 KLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTP 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  81 MFLILNNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYL 160
Cdd:MTH00112  215 MFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYL 294

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1115232151 161 RLCYAITLTLSPSPTTTPSSWRTKTTQPNLTLALTTSMAF 200
Cdd:MTH00112  295 RLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLSTL 334
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-213 6.46e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 167.84  E-value: 6.46e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSS 80
Cdd:MTH00200  135 KLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLT 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  81 MFLILNNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYL 160
Cdd:MTH00200  215 VFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYL 294

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1115232151 161 RLCYAITLTLSPSPTTTPSSWRTKTTqPNLTLALTTSMAFLLLPLTPTMLSLT 213
Cdd:MTH00200  295 RLSYLTLLTLSPNQINMMSSWRTKSN-SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-200 5.39e-35

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 126.58  E-value: 5.39e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSS 80
Cdd:MTH00041  135 KIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTS 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  81 MFLILNNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYL 160
Cdd:MTH00041  215 IFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYL 294

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1115232151 161 RLCYAITLTLSPSPTTTPSSWRTKTTQPNLTLALTTSMAF 200
Cdd:MTH00041  295 RISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSILSSI 334
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 14-164 1.99e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 98.36  E-value: 1.99e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  14 LLNPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSSMFLILNNNNTTKI 93
Cdd:MTH00160  140 LINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFL 219

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1115232151  94 NSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYLRLCY 164
Cdd:MTH00160  220 NQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY 290
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-165 1.23e-22

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 93.31  E-value: 1.23e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSS 80
Cdd:MTH00011  131 KIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTP 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  81 MFLILNNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYL 160
Cdd:MTH00011  211 LMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYL 290


                  ....*
gi 1115232151 161 RLCYA 165
Cdd:MTH00011  291 NLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 16-166 2.47e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 87.04  E-value: 2.47e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  16 NPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTSSMFLILNNNNTTKINS 95
Cdd:MTH00197  135 SFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ 214

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1115232151  96 IAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYLRLCYAI 166
Cdd:MTH00197  215 QYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-164 7.49e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 80.32  E-value: 7.49e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNP-TLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYIIMTS 79
Cdd:MTH00144  127 KVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  80 SMFLILNNNNTTKINSIaISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFY 159
Cdd:MTH00144  207 FLFFSLWSGDSGSMKDL-GSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFY 285


                  ....*
gi 1115232151 160 LRLCY 164
Cdd:MTH00144  286 LSVFF 290
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-166 2.33e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 61.96  E-value: 2.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNPTLLMtfGVLSIIIGGWGGLNQTQLRKILAYSSISHIG---WMVTILCYSPNLA-LLNLTVYII 76
Cdd:MTH00199  233 KIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESIQAsLIYMIIYVI 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  77 MTSSMFLILNNNNTTKINSIAIS--STKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLL 154
Cdd:MTH00199  311 MSICSFSIILSLKLTKGLIVEVSglSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVI 390

                         170
                  ....*....|..
gi 1115232151 155 SLFFYLRLCYAI 166
Cdd:MTH00199  391 AGVYYVRVVQII 402
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 18-166 2.54e-11

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 62.09  E-value: 2.54e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  18 TLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYII----MTSSMFL----ILNNNN 89
Cdd:COG0651   273 TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLaagaIERATG 352

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1115232151  90 TTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYLRLCYAI 166
Cdd:COG0651   353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-162 2.64e-11

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 62.06  E-value: 2.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNP-------TLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWM-VTILCYSPN---LALL 69
Cdd:COG1007   246 KIAAFAALLRLLVEAFPglaadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgvsAALF 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  70 NLTVYIIMTSSMFLIL-----NNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIP 144
Cdd:COG1007   326 YLLAYLFMNLGAFAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWL 405

                         170
                  ....*....|....*...
gi 1115232151 145 ATIMALATLLSLFFYLRL 162
Cdd:COG1007   406 AVIAVLNSVISAYYYLRV 423
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-162 1.75e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 59.27  E-value: 1.75e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNptLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCY----SPNLALLNLTVYII 76
Cdd:MTH00196  138 KLGIFSILVSIGLNVN--ILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYII 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  77 MTSSMFLILNNNNTTKINSIAIS--STKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLL 154
Cdd:MTH00196  216 MSICVFSIILALNVYKNLIIEFSglSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVI 295


                  ....*...
gi 1115232151 155 SLFFYLRL 162
Cdd:MTH00196  296 AGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-162 1.36e-09

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 56.88  E-value: 1.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLL-------NPTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGW-MVTILCYSPNL---ALL 69
Cdd:TIGR01770 246 KIAIFAVFLRLFLYIlfgfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLF 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  70 NLTVYIIMTSSMFLIL------NNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFI 143
Cdd:TIGR01770 326 YIFIYALMSLGAFGVLsllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYW 405

                         170
                  ....*....|....*....
gi 1115232151 144 PATIMALATLLSLFFYLRL 162
Cdd:TIGR01770 406 LAVIAVLTSVIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-134 4.98e-09

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 55.01  E-value: 4.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  19 LLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTIL----CYSPNLALLNLTVYIIMTSSMFLILNN-----NN 89
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVH 228

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1115232151  90 TTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQ 134
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 19-166 8.02e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 54.59  E-value: 8.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  19 LLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYII----------MTSSMFliLNNN 88
Cdd:PRK12667  297 ILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVF--IHAA 374

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1115232151  89 NTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYLRLCYAI 166
Cdd:PRK12667  375 GTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSL 452
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-162 1.86e-08

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 53.67  E-value: 1.86e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151   1 KLAHFAVLLQLYPLLNPTL-------LMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLA----LL 69
Cdd:PRK05777  247 KIAAFAVLLRLLVVAFGGLsedwqqvLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGysavLF 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  70 NLTVYIIMTSSMFLIL-----NNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIP 144
Cdd:PRK05777  327 YLLAYLFMTLGAFGVIsllrrKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWL 406

                         170
                  ....*....|....*...
gi 1115232151 145 ATIMALATLLSLFFYLRL 162
Cdd:PRK05777  407 AVIGVLNSAIGAFYYLRV 424
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-166 1.01e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 48.34  E-value: 1.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  18 TLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYI----IMTSSMFL----ILNNNN 89
Cdd:PRK08375  272 WLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLaagaIEVTYG 351

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1115232151  90 TTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYLRLCYAI 166
Cdd:PRK08375  352 TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRA 428
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-162 3.45e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.04  E-value: 3.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  18 TLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYII----MTSSMFLILN----NNN 89
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGsisyHFG 359

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1115232151  90 TTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYLRL 162
Cdd:PRK12662  360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 13-166 1.36e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.99  E-value: 1.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  13 PLLNpTLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVYII---MTSSMF-----LI 84
Cdd:PRK08668  269 PLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFnhaLFKGLFflifaAV 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  85 LNNNNTTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNLFIPATIMALATLLSLFFYLRLCY 164
Cdd:PRK08668  348 IYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427


                  ..
gi 1115232151 165 AI 166
Cdd:PRK08668  428 GV 429
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 19-57 2.88e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 43.92  E-value: 2.88e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1115232151  19 LLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMV 57
Cdd:COG1008   277 LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL 315
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 18-164 1.50e-04

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 41.85  E-value: 1.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  18 TLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWmVTILCYSPNL-----ALLNLTVYIIMTSSMFLI-------L 85
Cdd:TIGR01972 270 PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGF-VLLGIFSFNElgisgAVFQMISHGLITAALFLLvgvlyerA 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  86 NNNNTTKINSIAissTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQEMTKHNL---FIPATIMALATLLSLFFYLRL 162
Cdd:TIGR01972 349 HTRDIAKYGGLA---NKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPvvaFLAALGIVLAAAYMLTLYKRV 425


                  ..
gi 1115232151 163 CY 164
Cdd:TIGR01972 426 FF 427
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 19-57 1.65e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 41.77  E-value: 1.65e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1115232151  19 LLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMV 57
Cdd:MTH00198  358 LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-57 1.95e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 41.68  E-value: 1.95e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1115232151   7 VLLQLYPLLNPT-----LLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMV 57
Cdd:COG1009   260 LLARLSPLFALSpvwltVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMF 315
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-134 3.86e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.72  E-value: 3.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115232151  18 TLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCYSPNLALLNLTVY----IIMTSSMF----LILNNNN 89
Cdd:PRK12665  274 TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYvahhITVQTTLFlvvgLIERQAG 353

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1115232151  90 TTKINSIAISSTKSPLITILAMLTLLSLGGLPPLTGFLPKWMILQ 134
Cdd:PRK12665  354 SSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12650 PRK12650
DUF4040 family protein;
19-58 4.95e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.41  E-value: 4.95e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1115232151  19 LLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVT 58
Cdd:PRK12650  274 LLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVA 313
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 18-57 6.33e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 40.19  E-value: 6.33e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1115232151  18 TLLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMV 57
Cdd:PRK05846  278 PIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 17-82 4.36e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 37.60  E-value: 4.36e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1115232151  17 PTLLmTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIGWMVTILCY-SPNLALLNLTvyIIMTSSMF 82
Cdd:PRK12644  268 PTVL-VLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLA--MLLAHALF 331
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 19-54 7.11e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 36.93  E-value: 7.11e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1115232151  19 LLMTFGVLSIIIGGWGGLNQTQLRKILAYSSISHIG 54
Cdd:PRK12561  253 ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH