View
Concise Results
Standard Results
Full Results
preprotein translocase subunit SecY [Campylobacter jejuni]
Protein Classification
preprotein translocase subunit SecY ( domain architecture ID 11415179 )
preprotein translocase subunit SecY plays an essential role in vivo to facilitate protein translocation
List of domain hits
Name
Accession
Description
Interval
E-value
SecY
COG0201 Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular ...
5-414
3.34e-178
Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 439971
Cd Length: 427
Bit Score: 503.46
E-value: 3.34e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 5 L TNK IL I TL AF L FA YR VLAYV PVPG VNADVI A EF F NNNQNNA LGL F N V FSGGA AE RFSI IS LGIMPYITASIIM E LL AAT 84
Cdd:COG0201 14 L RKR IL F TL GI L IV YR LGSHI PVPG IDPAAL A QL F AQQSGGL LGL L N M FSGGA LS RFSI FA LGIMPYITASIIM Q LL TVV 93
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 85 F P NIGKMK KE RDSMQ - K YM Q II RY A T I V IT L V Q SI G V A I GL Q S LHGR GG aga IMVEDLNM F IA L CA I SML AGTM L LMWLG 163
Cdd:COG0201 94 I P KLEELQ KE GEEGR k K IT Q YT RY L T V V LA L L Q AF G I A L GL R S GPPG GG --- LVIDPGIL F YL L TV I TLT AGTM F LMWLG 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 164 EQIT Q RGIGNGISLIIFAGIV SGI P R A ISGTVGQINS GE MNF L TAFAIFA L I L IT I GVIIYI E LGE RRIP IS Y SRK VV MQ 243
Cdd:COG0201 171 EQIT E RGIGNGISLIIFAGIV ARL P S A LAQIFELVRT GE LSI L LLLLLLV L A L AV I AFVVFV E QAQ RRIP VQ Y AKR VV GR 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 244 NQNKRIMN Y I P I K L N LS GVIP P IFAS AI L M FP T TI L Q -- TSTNPY LQ A I NDF L N P NGY L FH VL TF L FV IFF A YFY AS I V F 321
Cdd:COG0201 251 RMYGGQST Y L P L K V N MA GVIP I IFAS SL L L FP A TI A Q ff GGSSGW LQ W I ANY L S P GSP L YI VL YA L LI IFF T YFY TA I T F 330
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 322 N AKD IA E NLKK Q GGFIPGIRPG EG T SS YL NE V AS RLTL S G S I Y L G L V A T LP WV L VKFM GVPF H FGGTS V LIVV Q VALDTM 401
Cdd:COG0201 331 N PEE IA D NLKK S GGFIPGIRPG KP T AE YL DK V LT RLTL V G A I F L A L I A I LP EI L GAIT GVPF Y FGGTS L LIVV G VALDTM 410
410
....*....|...
gi 1123393968 402 RK IE A Q IY M SK Y Q 414
Cdd:COG0201 411 KQ IE S Q LL M RH Y E 423
Name
Accession
Description
Interval
E-value
SecY
COG0201 Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular ...
5-414
3.34e-178
Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 439971
Cd Length: 427
Bit Score: 503.46
E-value: 3.34e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 5 L TNK IL I TL AF L FA YR VLAYV PVPG VNADVI A EF F NNNQNNA LGL F N V FSGGA AE RFSI IS LGIMPYITASIIM E LL AAT 84
Cdd:COG0201 14 L RKR IL F TL GI L IV YR LGSHI PVPG IDPAAL A QL F AQQSGGL LGL L N M FSGGA LS RFSI FA LGIMPYITASIIM Q LL TVV 93
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 85 F P NIGKMK KE RDSMQ - K YM Q II RY A T I V IT L V Q SI G V A I GL Q S LHGR GG aga IMVEDLNM F IA L CA I SML AGTM L LMWLG 163
Cdd:COG0201 94 I P KLEELQ KE GEEGR k K IT Q YT RY L T V V LA L L Q AF G I A L GL R S GPPG GG --- LVIDPGIL F YL L TV I TLT AGTM F LMWLG 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 164 EQIT Q RGIGNGISLIIFAGIV SGI P R A ISGTVGQINS GE MNF L TAFAIFA L I L IT I GVIIYI E LGE RRIP IS Y SRK VV MQ 243
Cdd:COG0201 171 EQIT E RGIGNGISLIIFAGIV ARL P S A LAQIFELVRT GE LSI L LLLLLLV L A L AV I AFVVFV E QAQ RRIP VQ Y AKR VV GR 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 244 NQNKRIMN Y I P I K L N LS GVIP P IFAS AI L M FP T TI L Q -- TSTNPY LQ A I NDF L N P NGY L FH VL TF L FV IFF A YFY AS I V F 321
Cdd:COG0201 251 RMYGGQST Y L P L K V N MA GVIP I IFAS SL L L FP A TI A Q ff GGSSGW LQ W I ANY L S P GSP L YI VL YA L LI IFF T YFY TA I T F 330
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 322 N AKD IA E NLKK Q GGFIPGIRPG EG T SS YL NE V AS RLTL S G S I Y L G L V A T LP WV L VKFM GVPF H FGGTS V LIVV Q VALDTM 401
Cdd:COG0201 331 N PEE IA D NLKK S GGFIPGIRPG KP T AE YL DK V LT RLTL V G A I F L A L I A I LP EI L GAIT GVPF Y FGGTS L LIVV G VALDTM 410
410
....*....|...
gi 1123393968 402 RK IE A Q IY M SK Y Q 414
Cdd:COG0201 411 KQ IE S Q LL M RH Y E 423
SecY
pfam00344 SecY;
62-401
1.61e-120
SecY;
Pssm-ID: 459771
Cd Length: 322
Bit Score: 353.28
E-value: 1.61e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 62 S IIS LGIMPYITASIIM E LL AATFP n IGKM KKE - RDSMQ K YM Q II RY A T I V IT L V Q S IG VAIG L qslhgrggaga IMVED 140
Cdd:pfam00344 1 S LFA LGIMPYITASIIM Q LL GVVIS - LEEL KKE g EEGRK K IN Q YT RY L T V V LA L I Q A IG IVLS L ----------- GVYGG 68
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 141 LNM F IA L CAISML AGTM L LMWLGEQIT QR GIGNGISLIIFAGIV SGI P R A I SG - TVGQINS G EMNF L TAFAIFALI L IT I 219
Cdd:pfam00344 69 GGG F YL L IVLQLT AGTM F LMWLGEQIT KY GIGNGISLIIFAGIV ARL P S A F SG a LIALFRL G ARSI L PNLLLLIIT L AV I 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 220 GVII Y IELG ERRIP IS Y SRK VV mqnqn KRIMN Y I P I KLN LS GVIP P IFAS AI L M FP T TI L Q TST npy LQ A I NDF L N P NGY 299
Cdd:pfam00344 149 ALVV Y LQQA ERRIP VQ Y AKR VV ----- GGQSS Y L P L KLN YA GVIP I IFAS SL L S FP A TI A Q FFG --- LQ F I AAA L D P GSP 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 300 L FH VL TF L FV IFFAYFY AS I V FN A KDIAENLKKQGGFIPGIRPG EG T SS YL NE V AS R L TL S G SIY LG LV A T LP WV L VKFM 379
Cdd:pfam00344 221 L YT VL YA L LI IFFAYFY TA I T FN P KDIAENLKKQGGFIPGIRPG KP T AK YL DR V IP R I TL L G ALF LG II A V LP DL L GALT 300
330 340
....*....|....*....|..
gi 1123393968 380 GVPF H FGGTS V LIVV Q VALDT M 401
Cdd:pfam00344 301 GVPF G FGGTS L LIVV G VALDT Y 322
3a0501s007
TIGR00967 preprotein translocase, SecY subunit; Members of this protein family are the SecY component of ...
7-413
7.77e-106
preprotein translocase, SecY subunit; Members of this protein family are the SecY component of the SecYEG translocon, or protein translocation pore, which is driven by the ATPase SecA. This model does not discriminate bacterial from archaeal forms. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273369
Cd Length: 410
Bit Score: 318.85
E-value: 7.77e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 7 N K I L I TL AF L FAY R VLAYV P V PG VN A DVIAEFFN nn QN NAL GL F N V FSGGA AERF SI IS LGI M PYITASII ME LL AATF P 86
Cdd:TIGR00967 2 E K L L F TL GL L VLF R IGTFI P I PG ID A SAFQNLIQ -- QN PIF GL L N T FSGGA LGQI SI FA LGI S PYITASII IQ LL TGDV P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 87 NIGKMK K ERDSM -- Q K YM Q II RY A T IVITLV QS I G - V AI G LQSLH G RG GA G aimvedlnm F IA L CA I SMLA G T M LL MWLG 163
Cdd:TIGR00967 80 PLLQLQ K KEGEI gr R K IN Q LT RY L T LILAFI QS L G i V MT G MYGYV G DP GA F --------- F YL L IV I QLTT G S M IV MWLG 150
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 164 EQIT QR GIGNGISL I IFAGI VSG IP RAISG -- T V G Q INSGEMNFLTA ---- FAIFALIL I TIG V IIYIELGE R R IPI SYS 237
Cdd:TIGR00967 151 EQIT KY GIGNGISL L IFAGI AAT IP SGLLQ pt E V R Q SKVRDLISFLQ nlpf LLYLIATI I VFA V VVFVQQAR R K IPI QSA 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 238 R kv VMQNQNKRIMN Y I P I KLN LS GVIP P IFASA I L MF P T TI L Q -- T S TNP -- YLQAINDF L NPNGYLFHV L TFLFV IFF A 313
Cdd:TIGR00967 231 K -- RQGGRRGSQST Y L P L KLN YA GVIP V IFASA L L SN P A TI S Q fl N S NQG ga WFLNPILS L SLSDPIGAI L YLILI IFF S 308
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 314 Y FY ASIVF N AK D I A E NLKKQG G FIPGIRPG EG T SS YL NE V AS RLT LS GS IY LGL V A T LP WV L VKFM G V P -- FHF GGTS V L 391
Cdd:TIGR00967 309 F FY VELQL N PE D M A K NLKKQG M FIPGIRPG KM T EK YL KR V IP RLT FV GS LF LGL I A L LP NF L GAIG G L P ts KGL GGTS L L 388
410 420
....*....|....*....|..
gi 1123393968 392 IVV Q VA L DT MRKI E AQIYMSK Y 413
Cdd:TIGR00967 389 IVV G VA I DT YKQL E SELISRN Y 410
secY
CHL00161 preprotein translocase subunit SecY; Validated
5-416
5.81e-87
preprotein translocase subunit SecY; Validated
Pssm-ID: 214379
Cd Length: 417
Bit Score: 270.72
E-value: 5.81e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 5 L T N KI L I TL AF L FAY R VLAYV PVPG VNADVIA ef FNNNQ N NA L G L F N V FSGG AAERFSIIS LGI M PYI T ASII ME LL AAT 84
Cdd:CHL00161 10 L L N RL L F TL GL L LLI R LGTFI PVPG IDHTQLY -- PSLSN N PL L N L L N T FSGG GFFVIGLFA LGI L PYI N ASII IQ LL TSI 87
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 85 F P NIG K MK KE RDSM -- Q K YM Q II RY A T IVITLV QSIG VAIG L QSL hgrggagaim VEDL N MFI AL - CAISMLA G T M LLM W 161
Cdd:CHL00161 88 I P SLE K LQ KE EGEA gr R K IN Q YT RY L T LGWAII QSIG ISFW L KPY ---------- LFNW N LLL AL e IVLALTS G S M IVL W 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 162 L G E Q IT QR G I GNG I SL I IF AG IVS GI P RAIS g TVGQIN S GEMNF L TAFAIFA L IL IT IGV II YIELGE R R IP I s Y S R K VV 241
Cdd:CHL00161 158 L S E L IT EK G L GNG S SL L IF FN IVS NL P KLLQ - SLLFSL S ANITI L SILLLLF L FF IT LIG II FLQEAI R K IP L - I S A K QL 235
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 242 MQNQNKRIMN Y I P IK LN LS GV I P P IFASA I L MF P TTILQTST N PY L QAINDF --- L NPNGY L FH VL T F LFVI FF A YFY AS 318
Cdd:CHL00161 236 GKSSRLASNS Y L P LR LN QA GV M P I IFASA L L VL P GYLTNILL N QF L LPLLSL flq L ASFKI L YL VL Y F VLIL FF S YFY ST 315
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 319 IV F N A KDI A ENL K K QGGF IPGIRPG EG T SS YL NEVAS RLTL S G SIY L GLV A T LP WVLVKFMGVPF -- HF G G TS V LI V V Q V 396
Cdd:CHL00161 316 IV L N P KDI S ENL Q K MAVS IPGIRPG KA T TK YL KKTLN RLTL L G ALF L AFI A L LP NLIESVLNLSV fk GL G T TS L LI L V G V 395
410 420
....*....|....*....|
gi 1123393968 397 A L DT M R K I EAQIYMSK Y QTL 416
Cdd:CHL00161 396 A I DT S R Q I QTYLISNN Y ENM 415
Name
Accession
Description
Interval
E-value
SecY
COG0201 Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular ...
5-414
3.34e-178
Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 439971
Cd Length: 427
Bit Score: 503.46
E-value: 3.34e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 5 L TNK IL I TL AF L FA YR VLAYV PVPG VNADVI A EF F NNNQNNA LGL F N V FSGGA AE RFSI IS LGIMPYITASIIM E LL AAT 84
Cdd:COG0201 14 L RKR IL F TL GI L IV YR LGSHI PVPG IDPAAL A QL F AQQSGGL LGL L N M FSGGA LS RFSI FA LGIMPYITASIIM Q LL TVV 93
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 85 F P NIGKMK KE RDSMQ - K YM Q II RY A T I V IT L V Q SI G V A I GL Q S LHGR GG aga IMVEDLNM F IA L CA I SML AGTM L LMWLG 163
Cdd:COG0201 94 I P KLEELQ KE GEEGR k K IT Q YT RY L T V V LA L L Q AF G I A L GL R S GPPG GG --- LVIDPGIL F YL L TV I TLT AGTM F LMWLG 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 164 EQIT Q RGIGNGISLIIFAGIV SGI P R A ISGTVGQINS GE MNF L TAFAIFA L I L IT I GVIIYI E LGE RRIP IS Y SRK VV MQ 243
Cdd:COG0201 171 EQIT E RGIGNGISLIIFAGIV ARL P S A LAQIFELVRT GE LSI L LLLLLLV L A L AV I AFVVFV E QAQ RRIP VQ Y AKR VV GR 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 244 NQNKRIMN Y I P I K L N LS GVIP P IFAS AI L M FP T TI L Q -- TSTNPY LQ A I NDF L N P NGY L FH VL TF L FV IFF A YFY AS I V F 321
Cdd:COG0201 251 RMYGGQST Y L P L K V N MA GVIP I IFAS SL L L FP A TI A Q ff GGSSGW LQ W I ANY L S P GSP L YI VL YA L LI IFF T YFY TA I T F 330
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 322 N AKD IA E NLKK Q GGFIPGIRPG EG T SS YL NE V AS RLTL S G S I Y L G L V A T LP WV L VKFM GVPF H FGGTS V LIVV Q VALDTM 401
Cdd:COG0201 331 N PEE IA D NLKK S GGFIPGIRPG KP T AE YL DK V LT RLTL V G A I F L A L I A I LP EI L GAIT GVPF Y FGGTS L LIVV G VALDTM 410
410
....*....|...
gi 1123393968 402 RK IE A Q IY M SK Y Q 414
Cdd:COG0201 411 KQ IE S Q LL M RH Y E 423
SecY
pfam00344 SecY;
62-401
1.61e-120
SecY;
Pssm-ID: 459771
Cd Length: 322
Bit Score: 353.28
E-value: 1.61e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 62 S IIS LGIMPYITASIIM E LL AATFP n IGKM KKE - RDSMQ K YM Q II RY A T I V IT L V Q S IG VAIG L qslhgrggaga IMVED 140
Cdd:pfam00344 1 S LFA LGIMPYITASIIM Q LL GVVIS - LEEL KKE g EEGRK K IN Q YT RY L T V V LA L I Q A IG IVLS L ----------- GVYGG 68
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 141 LNM F IA L CAISML AGTM L LMWLGEQIT QR GIGNGISLIIFAGIV SGI P R A I SG - TVGQINS G EMNF L TAFAIFALI L IT I 219
Cdd:pfam00344 69 GGG F YL L IVLQLT AGTM F LMWLGEQIT KY GIGNGISLIIFAGIV ARL P S A F SG a LIALFRL G ARSI L PNLLLLIIT L AV I 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 220 GVII Y IELG ERRIP IS Y SRK VV mqnqn KRIMN Y I P I KLN LS GVIP P IFAS AI L M FP T TI L Q TST npy LQ A I NDF L N P NGY 299
Cdd:pfam00344 149 ALVV Y LQQA ERRIP VQ Y AKR VV ----- GGQSS Y L P L KLN YA GVIP I IFAS SL L S FP A TI A Q FFG --- LQ F I AAA L D P GSP 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 300 L FH VL TF L FV IFFAYFY AS I V FN A KDIAENLKKQGGFIPGIRPG EG T SS YL NE V AS R L TL S G SIY LG LV A T LP WV L VKFM 379
Cdd:pfam00344 221 L YT VL YA L LI IFFAYFY TA I T FN P KDIAENLKKQGGFIPGIRPG KP T AK YL DR V IP R I TL L G ALF LG II A V LP DL L GALT 300
330 340
....*....|....*....|..
gi 1123393968 380 GVPF H FGGTS V LIVV Q VALDT M 401
Cdd:pfam00344 301 GVPF G FGGTS L LIVV G VALDT Y 322
3a0501s007
TIGR00967 preprotein translocase, SecY subunit; Members of this protein family are the SecY component of ...
7-413
7.77e-106
preprotein translocase, SecY subunit; Members of this protein family are the SecY component of the SecYEG translocon, or protein translocation pore, which is driven by the ATPase SecA. This model does not discriminate bacterial from archaeal forms. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273369
Cd Length: 410
Bit Score: 318.85
E-value: 7.77e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 7 N K I L I TL AF L FAY R VLAYV P V PG VN A DVIAEFFN nn QN NAL GL F N V FSGGA AERF SI IS LGI M PYITASII ME LL AATF P 86
Cdd:TIGR00967 2 E K L L F TL GL L VLF R IGTFI P I PG ID A SAFQNLIQ -- QN PIF GL L N T FSGGA LGQI SI FA LGI S PYITASII IQ LL TGDV P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 87 NIGKMK K ERDSM -- Q K YM Q II RY A T IVITLV QS I G - V AI G LQSLH G RG GA G aimvedlnm F IA L CA I SMLA G T M LL MWLG 163
Cdd:TIGR00967 80 PLLQLQ K KEGEI gr R K IN Q LT RY L T LILAFI QS L G i V MT G MYGYV G DP GA F --------- F YL L IV I QLTT G S M IV MWLG 150
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 164 EQIT QR GIGNGISL I IFAGI VSG IP RAISG -- T V G Q INSGEMNFLTA ---- FAIFALIL I TIG V IIYIELGE R R IPI SYS 237
Cdd:TIGR00967 151 EQIT KY GIGNGISL L IFAGI AAT IP SGLLQ pt E V R Q SKVRDLISFLQ nlpf LLYLIATI I VFA V VVFVQQAR R K IPI QSA 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 238 R kv VMQNQNKRIMN Y I P I KLN LS GVIP P IFASA I L MF P T TI L Q -- T S TNP -- YLQAINDF L NPNGYLFHV L TFLFV IFF A 313
Cdd:TIGR00967 231 K -- RQGGRRGSQST Y L P L KLN YA GVIP V IFASA L L SN P A TI S Q fl N S NQG ga WFLNPILS L SLSDPIGAI L YLILI IFF S 308
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 314 Y FY ASIVF N AK D I A E NLKKQG G FIPGIRPG EG T SS YL NE V AS RLT LS GS IY LGL V A T LP WV L VKFM G V P -- FHF GGTS V L 391
Cdd:TIGR00967 309 F FY VELQL N PE D M A K NLKKQG M FIPGIRPG KM T EK YL KR V IP RLT FV GS LF LGL I A L LP NF L GAIG G L P ts KGL GGTS L L 388
410 420
....*....|....*....|..
gi 1123393968 392 IVV Q VA L DT MRKI E AQIYMSK Y 413
Cdd:TIGR00967 389 IVV G VA I DT YKQL E SELISRN Y 410
secY
CHL00161 preprotein translocase subunit SecY; Validated
5-416
5.81e-87
preprotein translocase subunit SecY; Validated
Pssm-ID: 214379
Cd Length: 417
Bit Score: 270.72
E-value: 5.81e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 5 L T N KI L I TL AF L FAY R VLAYV PVPG VNADVIA ef FNNNQ N NA L G L F N V FSGG AAERFSIIS LGI M PYI T ASII ME LL AAT 84
Cdd:CHL00161 10 L L N RL L F TL GL L LLI R LGTFI PVPG IDHTQLY -- PSLSN N PL L N L L N T FSGG GFFVIGLFA LGI L PYI N ASII IQ LL TSI 87
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 85 F P NIG K MK KE RDSM -- Q K YM Q II RY A T IVITLV QSIG VAIG L QSL hgrggagaim VEDL N MFI AL - CAISMLA G T M LLM W 161
Cdd:CHL00161 88 I P SLE K LQ KE EGEA gr R K IN Q YT RY L T LGWAII QSIG ISFW L KPY ---------- LFNW N LLL AL e IVLALTS G S M IVL W 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 162 L G E Q IT QR G I GNG I SL I IF AG IVS GI P RAIS g TVGQIN S GEMNF L TAFAIFA L IL IT IGV II YIELGE R R IP I s Y S R K VV 241
Cdd:CHL00161 158 L S E L IT EK G L GNG S SL L IF FN IVS NL P KLLQ - SLLFSL S ANITI L SILLLLF L FF IT LIG II FLQEAI R K IP L - I S A K QL 235
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 242 MQNQNKRIMN Y I P IK LN LS GV I P P IFASA I L MF P TTILQTST N PY L QAINDF --- L NPNGY L FH VL T F LFVI FF A YFY AS 318
Cdd:CHL00161 236 GKSSRLASNS Y L P LR LN QA GV M P I IFASA L L VL P GYLTNILL N QF L LPLLSL flq L ASFKI L YL VL Y F VLIL FF S YFY ST 315
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 319 IV F N A KDI A ENL K K QGGF IPGIRPG EG T SS YL NEVAS RLTL S G SIY L GLV A T LP WVLVKFMGVPF -- HF G G TS V LI V V Q V 396
Cdd:CHL00161 316 IV L N P KDI S ENL Q K MAVS IPGIRPG KA T TK YL KKTLN RLTL L G ALF L AFI A L LP NLIESVLNLSV fk GL G T TS L LI L V G V 395
410 420
....*....|....*....|
gi 1123393968 397 A L DT M R K I EAQIYMSK Y QTL 416
Cdd:CHL00161 396 A I DT S R Q I QTYLISNN Y ENM 415
secY
PRK12417 preprotein translocase subunit SecY; Reviewed
8-372
1.79e-39
preprotein translocase subunit SecY; Reviewed
Pssm-ID: 237095
Cd Length: 404
Bit Score: 145.91
E-value: 1.79e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 8 KIL I T LAF LF A Y RVLAYVPV P G V NA dvia EFFNNNQNNA L GLFNVFS GG AAERFS I I SLG IM P YI T AS II ME L L aa TFPN 87
Cdd:PRK12417 15 KIL F T CFI LF I Y ILGSNISI P F V SY ---- NDMLGGHESF L KIAAANT GG DLRTLN I F SLG LG P WM T SM II LQ L F -- SYRK 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 88 IGKMK K ERDSM Q K Y MQ ii R YA T IV I TLV QS IG V AIG L Q S LHG rggagaim VEDL N MFIAL ca ISMLA GTM L L M WL GEQIT 167
Cdd:PRK12417 89 RDGLM K QTIEE Q H Y RE -- R IL T LI I AVI QS LA V ILS L P S KER -------- ISQT N ILLNT -- LILVT GTM F L V WL SDLNA 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 168 QR GIG n G ISL I IFAGIVSG IP RAISGT vgq I NSGEMNFLT afa IFA L IL IT IGVIIY IEL G E R RIP I sysr KVV M QNQNK 247
Cdd:PRK12417 157 RY GIG - G PMP I VLVSMIKS IP QDVIEY --- I DASHIVIIL --- LIL L VI IT LFFLYF IEL V E Y RIP Y ---- NDI M NHNRF 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 248 RIMN Y IP IKLN LS G VI P PIFASAI L M FP TT I LQT ----- ST N PYLQ A IN D F L NPNGY L FHVLTFLFVIFFA YF YASIVF N 322
Cdd:PRK12417 226 KMYS Y LS IKLN PA G GM P IMYSMSL L V FP QY I IIL ilsif PN N SGIS A DM D M L SFGSP L GVTVYLILQFLLS YF FSFVNI N 305
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1123393968 323 A K D IA ENLK K Q G GF IPG IR PG EG T SS YLN EV A S R LTLS G SIYLGLV A TL P 372
Cdd:PRK12417 306 T K Q IA KDML K S G NY IPG VY PG KD T ER YLN YI A R R FSWF G ALFVTVI A GI P 355
acc_sec_Y2
TIGR02920 accessory Sec system translocase SecY2; Members of this family are restricted to the ...
8-414
7.26e-33
accessory Sec system translocase SecY2; Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131966
Cd Length: 395
Bit Score: 127.54
E-value: 7.26e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 8 KIL I T LAF L FA Y RVLA Y V P V P G V na D V IAEFFNNNQ N NALGLFNVFS GG AAERF SI I SLG IM P YI T AS II ME L L aa T F PN 87
Cdd:TIGR02920 5 KIL F T CFI L II Y VLGS Y I P I P F V -- E V SKQDMEGVK N SFFKIAIANT GG NLTTL SI F SLG LG P WM T SM II LQ L F -- S F TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 88 IGKMKKERDSM Q K Y MQ ii R YA T IV I TLV Q SIGVAIGLQSLH G rggagaim VE D L NM FI A L ca ISMLA GT M LL M WL GEQIT 167
Cdd:TIGR02920 81 SDGFDAQSPKE Q Q Y RE -- R FL T LI I AII Q GLAIIHSFTNKN G -------- LS D F NM LL A T -- LILVT GT C LL V WL ADLNA 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 168 QR GIG n G ISL I IFAGIVSG IP RAISGT vgq INSGEMNFLTAFAI fa L I L ITIGVIIY IE LG E R RIP ISY srkv VMQNQNK 247
Cdd:TIGR02920 149 KY GIG - G SMP I VLVSMLKN IP SNVFEL --- FQMSYIWLIALLIL -- L T L VALFLLAF IE RA E Y RIP VND ---- ISLHNRS 218
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 248 RI M N Y I PIKLN LS G VIPPIFASAI LM F P TT I LQT ----- STNPYLQAINDFLNPNGYLFHVLTFLFVIFFA YF YASIVF N 322
Cdd:TIGR02920 219 NL M S Y L PIKLN PA G GMMYMYVMSL LM L P QY I IIL lgrif PNSSLINNWVFQFSFSSPVGILIYLILQMLLS YF FTFVNI N 298
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 323 A K D I AENLK K Q G GF IPGI R PG EG T SS YLN EV A S R LTLS G SIYLGLVATL P WVLVK F MGVPFHFGGTSVLIVVQVALDTMR 402
Cdd:TIGR02920 299 P K E I SKSFR K S G NY IPGI A PG KD T QR YLN RL A R R FCWF G GVFNAFQLGI P LYFAL F VPHLLTEAYIPGQFMMITGMSFNI 378
410
....*....|..
gi 1123393968 403 KI E AQIYMSKYQ 414
Cdd:TIGR02920 379 AD E IRTILYFDR 390
PRK08568
PRK08568 preprotein translocase subunit SecY; Reviewed
5-398
1.47e-20
preprotein translocase subunit SecY; Reviewed
Pssm-ID: 236293
Cd Length: 462
Bit Score: 93.37
E-value: 1.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 5 LTN K ILI T LAF L FA Y RV L AYV P VP G VNADVIAE F fnnnqnnal G L FNVFSG G A ae RFSIIS LGI M P YI TA S II ME LL A at 84
Cdd:PRK08568 26 FKE K LKW T AIV L IL Y FI L TNI P LY G ISQSSQDL F --------- E L LRIIFA G S -- FGTLLQ LGI G P IV TA G II LQ LL V -- 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 85 FPNIGKM -- KKER D SM q KYMQIIRYAT IV ITLVQSIGVAIGLQSLHGR G G A GAIMVED L n M F IA L CA ismla G TM L LMW L 162
Cdd:PRK08568 93 GSKLINL dl SDPE D RA - LFQGLQKLLA IV MIALEAAPFVLAGAFGPAT G L A STPLLAL L - I F LQ L FL ----- G GI L IIL L 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 163 G E QITQR GIG N GISL I I F AG I ------------------- V SG IP RAI S GTVGQINSGEMNFL T AFA - IFA LI -- LITIG 220
Cdd:PRK08568 166 D E LVSKW GIG S GISL F I L AG V sqtifvglfnwltggqglp V GF IP ALF S AITSGNLTLALLLT T RGL l LLG LI tt IVIFL 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 221 VII Y I E LGERR IP I S YS R K vvmqnqn KRIMNYI P I K LNLSG V I P P I FAS A ---- I LM F p TTI LQ TSTN P Y L QAIND ---- 292
Cdd:PRK08568 246 IVV Y L E SMRVE IP L S HG R V ------- RGARGRY P L K FIYVS V L P V I LVR A lqan I QL F - GQL LQ RLGI P I L GTYDS sgas 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 293 ------- F L N P NGYLF ------- HVLTFLFV ----- I F FA Y F YASIV - FNA K DI A EN L KKQ G GF IPG I R PGEGT - SSY L N 351
Cdd:PRK08568 318 pisglay Y L S P PHSPY dwiqdpl RAIIYALF mivls I L FA I F WVETT g LDP K TQ A RQ L QNS G MQ IPG F R RNPKV i EKV L E 397
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1123393968 352 EVASRL T LS G SIYL GL V A tlpw VL VKFM G VP fh F GGT SV L IV V QVAL 398
Cdd:PRK08568 398 RYIPPV T VI G GAIV GL L A ---- VL ADLL G AL -- G GGT GL L LT V SIVY 438
PTZ00219
PTZ00219 Sec61 alpha subunit; Provisional
5-187
2.06e-03
Sec61 alpha subunit; Provisional
Pssm-ID: 185519 [Multi-domain]
Cd Length: 474
Bit Score: 40.38
E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 5 LTN K I L I T LAF LF AYR V LAYV P VP G V nadviaef FNNNQNNALGLFN V FS gg A AE R FSIIS LGI M P YI T A S II M E LLA - A 83
Cdd:PTZ00219 30 FKE K V L W T AIA LF VFL V CCQI P LY G I -------- RSSSSSDPFYWMR V IL -- A SN R GTLME LGI S P IV T S S MV M Q LLA g S 99
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1123393968 84 TFPNIGK - M K KE R DSMQKYMQII rya TIV ITL VQ si G VA IGLQSLH G R ggagaim VEDLNMFI A LCA I SM L AGTMLLMW L 162
Cdd:PTZ00219 100 KIIDVDQ n N K ED R ALFEGAQKLL --- GLL ITL GE -- A VA YVWSGMY G D ------- ISEIGAGN A ILI I LQ L FFAGIVVI L 167
170 180
....*....|....*....|....*..
gi 1123393968 163 GEQIT Q R -- G I G N GISL I I FAG I VSG I 187
Cdd:PTZ00219 168 LDELL Q K gy G L G S GISL F I ATN I CET I 194
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
