|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
3-317 |
1.35e-146 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 419.63 E-value: 1.35e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 3 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDFAQAMV 80
Cdd:TIGR00362 104 LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENnpNAKVLYVSSEKFTNDFV 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 81 EHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 160
Cdd:TIGR00362 184 NALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLV 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 161 VEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLEN-TKNVREIEGK-IKLIKLKGFEG----LERKERKERDKL---- 229
Cdd:TIGR00362 264 VDIEPpDLETRLAILQKKAEEEGLELPDEVLEFIAKNiTSNVRELEGAlNRLLAYASLTGkpitLELAKEALKDLLraqk 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 230 -----MQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEKKKD 304
Cdd:TIGR00362 344 keitiENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETD 423
|
330
....*....|...
gi 112491279 305 RKFKHLVGFLEKQ 317
Cdd:TIGR00362 424 AELKEDIEELKRK 436
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
2-317 |
1.38e-132 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 382.95 E-value: 1.38e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 2 FLNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDFAQAM 79
Cdd:PRK00149 65 QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKnpNAKVVYVTSEKFTNDF 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 80 VEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 159
Cdd:PRK00149 145 VNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGL 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 160 LVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLEN-TKNVREIEGkiKLIKLKGFEGLERKE--------------- 222
Cdd:PRK00149 225 TVDIEpPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNiTSNVRELEG--ALNRLIAYASLTGKPitlelakealkdlla 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 223 -RKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEK 301
Cdd:PRK00149 303 aQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLL 382
|
330
....*....|....*.
gi 112491279 302 KKDRKFKHLVGFLEKQ 317
Cdd:PRK00149 383 EEDPELKEDVEELKRK 398
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
3-287 |
8.31e-118 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 341.79 E-value: 8.31e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 3 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDFAQAMV 80
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENnpGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 81 EHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 160
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 161 VEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLEN-TKNVREIEGkiKLIKLKGFEGLERKE---------------- 222
Cdd:COG0593 161 VDIQpPDLETRIAILRKKAADRGLELPDEVLEYLARRiERNVRELEG--ALNRLDAYALLTGRPitlelarevlkdllra 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112491279 223 RKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDH 287
Cdd:COG0593 239 QKKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
3-219 |
2.32e-81 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 246.09 E-value: 2.32e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 3 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSADDFAQAMV 80
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYAlqNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 81 EHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 160
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112491279 161 VEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLEN-TKNVREIEGkiKLIKLKGFEGLE 219
Cdd:pfam00308 161 TDIEpPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRvTDNVRELEG--ALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
232-317 |
3.11e-32 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 115.30 E-value: 3.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 232 IVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEKKKDRKFKHLV 311
Cdd:cd06571 4 IIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKEDV 83
|
....*.
gi 112491279 312 GFLEKQ 317
Cdd:cd06571 84 EELEKK 89
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
229-295 |
7.35e-26 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 97.96 E-value: 7.35e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112491279 229 LMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIR 295
Cdd:smart00760 2 IEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACR 68
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
39-152 |
4.31e-10 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 59.02 E-value: 4.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSgKERTQIE 118
Cdd:NF038214 93 VLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDELGYLP-FSREGAN 171
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 112491279 119 -FFHIFNTLYllEKQ-IILASDRHPQKLDGV----------SDRLV 152
Cdd:NF038214 172 lLFELIADRY--ERGsTIITSNLPFSEWGEVfgdptlaaaiLDRLV 215
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
3-317 |
1.35e-146 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 419.63 E-value: 1.35e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 3 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDFAQAMV 80
Cdd:TIGR00362 104 LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENnpNAKVLYVSSEKFTNDFV 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 81 EHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 160
Cdd:TIGR00362 184 NALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLV 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 161 VEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLEN-TKNVREIEGK-IKLIKLKGFEG----LERKERKERDKL---- 229
Cdd:TIGR00362 264 VDIEPpDLETRLAILQKKAEEEGLELPDEVLEFIAKNiTSNVRELEGAlNRLLAYASLTGkpitLELAKEALKDLLraqk 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 230 -----MQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEKKKD 304
Cdd:TIGR00362 344 keitiENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETD 423
|
330
....*....|...
gi 112491279 305 RKFKHLVGFLEKQ 317
Cdd:TIGR00362 424 AELKEDIEELKRK 436
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
2-317 |
1.38e-132 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 382.95 E-value: 1.38e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 2 FLNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDFAQAM 79
Cdd:PRK00149 65 QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKnpNAKVVYVTSEKFTNDF 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 80 VEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 159
Cdd:PRK00149 145 VNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGL 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 160 LVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLEN-TKNVREIEGkiKLIKLKGFEGLERKE--------------- 222
Cdd:PRK00149 225 TVDIEpPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNiTSNVRELEG--ALNRLIAYASLTGKPitlelakealkdlla 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 223 -RKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEK 301
Cdd:PRK00149 303 aQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLL 382
|
330
....*....|....*.
gi 112491279 302 KKDRKFKHLVGFLEKQ 317
Cdd:PRK00149 383 EEDPELKEDVEELKRK 398
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
3-287 |
8.31e-118 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 341.79 E-value: 8.31e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 3 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDFAQAMV 80
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENnpGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 81 EHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 160
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 161 VEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLEN-TKNVREIEGkiKLIKLKGFEGLERKE---------------- 222
Cdd:COG0593 161 VDIQpPDLETRIAILRKKAADRGLELPDEVLEYLARRiERNVRELEG--ALNRLDAYALLTGRPitlelarevlkdllra 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112491279 223 RKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDH 287
Cdd:COG0593 239 QKKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
3-219 |
2.32e-81 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 246.09 E-value: 2.32e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 3 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSADDFAQAMV 80
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYAlqNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 81 EHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 160
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112491279 161 VEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLEN-TKNVREIEGkiKLIKLKGFEGLE 219
Cdd:pfam00308 161 TDIEpPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRvTDNVRELEG--ALNRLLAYSSLN 219
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
3-305 |
2.11e-76 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 245.51 E-value: 2.11e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 3 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK--RGYRVIYSSADDFAQAMV 80
Cdd:PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRlyPGTRVRYVSSEEFTNEFI 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 81 EHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 160
Cdd:PRK14086 361 NSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 161 VEI---ELDnkTRFKIIKEKLKEFNLELRKEVIDYLLEN-TKNVREIEGkiKLIKLKGFEGLERK-------ERKERDkL 229
Cdd:PRK14086 441 TDVqppELE--TRIAILRKKAVQEQLNAPPEVLEFIASRiSRNIRELEG--ALIRVTAFASLNRQpvdlgltEIVLRD-L 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 230 M-----------QIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRkDHTTVIHAIRSVE 298
Cdd:PRK14086 516 IpedsapeitaaAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFGR-DHTTVMHADRKIR 594
|
....*..
gi 112491279 299 EEKKKDR 305
Cdd:PRK14086 595 ALMAERR 601
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
1-306 |
2.35e-64 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 209.69 E-value: 2.35e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 1 DFLNPKYTLENFIVGEGNRLAYEVVKE----ALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 76
Cdd:PRK12422 102 GELDPLMTFANFLVTPENDLPHRILQEftkvSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 77 QAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE 156
Cdd:PRK12422 182 EHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFE 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 157 GGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK-NVREIEGKIKLIKLKG------------------FE 216
Cdd:PRK12422 262 WGIAIPLHpLTKEGLRSFLERKAEALSIRIEETALDFLIEALSsNVKSLLHALTLLAKRVaykklshqllyvddikalLH 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 217 GLERKERKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRkDHTTVIHAIRS 296
Cdd:PRK12422 342 DVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVFSR-DHSTVISSIRA 420
|
330
....*....|
gi 112491279 297 VEEEKKKDRK 306
Cdd:PRK12422 421 ISQKLEEDDR 430
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
232-317 |
3.11e-32 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 115.30 E-value: 3.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 232 IVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEKKKDRKFKHLV 311
Cdd:cd06571 4 IIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKEDV 83
|
....*.
gi 112491279 312 GFLEKQ 317
Cdd:cd06571 84 EELEKK 89
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
8-194 |
2.64e-27 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 106.50 E-value: 2.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 8 TLENFIVGeGNRLAYEVVKEALENLGSlyNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGT 87
Cdd:TIGR03420 13 TFDNFYAG-GNAELLAALRQLAAGKGD--RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 88 inefrnmykSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI-ELD 166
Cdd:TIGR03420 90 ---------QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLpPLS 160
|
170 180
....*....|....*....|....*...
gi 112491279 167 NKTRFKIIKEKLKEFNLELRKEVIDYLL 194
Cdd:TIGR03420 161 DEEKIAALQSRAARRGLQLPDEVADYLL 188
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
231-297 |
8.90e-27 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 100.17 E-value: 8.90e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112491279 231 QIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSV 297
Cdd:pfam08299 3 KIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
229-295 |
7.35e-26 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 97.96 E-value: 7.35e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112491279 229 LMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIR 295
Cdd:smart00760 2 IEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACR 68
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
8-147 |
1.48e-18 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 83.29 E-value: 1.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 8 TLENFIVGEGNRLAyevvKEALENLGSL-----YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH 82
Cdd:COG1484 70 TLEDFDFDAQPGLD----RRQILELATLdfierGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEA 145
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112491279 83 LKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYlLEKQIILASDRHPQKLDGV 147
Cdd:COG1484 146 RADGRLERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRY-ERRSTIITSNLPFSEWGEV 209
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
17-156 |
3.73e-18 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 79.88 E-value: 3.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 17 GNRLAYEVVKEALENLGslYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTIN----EFR 92
Cdd:cd00009 2 GQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLvrllFEL 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112491279 93 NMYKSVDLLLLDDVQFLS-GKERTQIEFFHIFNTLYLLEK--QIILASDRHP--QKLDGVSDRLVSRFE 156
Cdd:cd00009 80 AEKAKPGVLFIDEIDSLSrGAQNALLRVLETLNDLRIDREnvRVIGATNRPLlgDLDRALYDRLDIRIV 148
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
1-194 |
2.38e-15 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 73.86 E-value: 2.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 1 DFLNPKY-TLENFIVGeGNRlayEVVkEALENLGSLYNP---IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSaddfA 76
Cdd:PRK08903 8 DLGPPPPpTFDNFVAG-ENA---ELV-ARLRELAAGPVAdrfFYLWGEAGSGRSHLLQALVADASYGGRNARYLD----A 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 77 QAMVEHLKKGTinefrnmykSVDLLLLDDVQFLSGKErtQIEFFHIFNTLYLL-EKQIILASDRHPQKLDgVSDRLVSRF 155
Cdd:PRK08903 79 ASPLLAFDFDP---------EAELYAVDDVERLDDAQ--QIALFNLFNRVRAHgQGALLVAGPAAPLALP-LREDLRTRL 146
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 112491279 156 EGGILVEI-ELDNKTRFKIIKEKLKEFNLELRKEVIDYLL 194
Cdd:PRK08903 147 GWGLVYELkPLSDADKIAALKAAAAERGLQLADEVPDYLL 186
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
6-185 |
4.04e-13 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 68.12 E-value: 4.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 6 KYTLENFIVGEGNRLAYEVVKEAL--------ENLGSLynpifIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 77
Cdd:PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVkkfeemkkENVGLL-----LWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 78 AMVEHLKKGTI---NEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL-DGVSDRLVS 153
Cdd:PRK08116 156 RIKSTYKSSGKedeNEIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELkNQYGKRIYD 235
|
170 180 190
....*....|....*....|....*....|...
gi 112491279 154 R-FEGGILVEIELDNKtRFKIIKEKLKEFNLEL 185
Cdd:PRK08116 236 RiLEMCTPVENEGKSY-RKEIAKEKLQRLKELL 267
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
223-319 |
4.07e-13 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 65.18 E-value: 4.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 223 RKERDKLMQIVEFVANYYA----VKVEDILSDKRNKRT-SEARKIAMYLCRKVCSASLIEIARAFKRkDHTTVIHAIRSV 297
Cdd:PRK06030 15 DKRRERLIELCEAVIDLLAlafgVSGAEIASPLRGRREvSRIRQIAMYVAHVSLGWPMNEVALAFGR-DRTTVGHACHTV 93
|
90 100
....*....|....*....|....*
gi 112491279 298 eEEKKKDRKFKHLVGFLEK---QAF 319
Cdd:PRK06030 94 -EDLRDDAAFDARVSVLERivnSAF 117
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
39-152 |
4.31e-10 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 59.02 E-value: 4.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSgKERTQIE 118
Cdd:NF038214 93 VLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDELGYLP-FSREGAN 171
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 112491279 119 -FFHIFNTLYllEKQ-IILASDRHPQKLDGV----------SDRLV 152
Cdd:NF038214 172 lLFELIADRY--ERGsTIITSNLPFSEWGEVfgdptlaaaiLDRLV 215
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
23-154 |
1.36e-09 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 58.37 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 23 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFaqamVEHLKKGTINEFRNMYKS----- 97
Cdd:PRK06835 170 EKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL----IEILREIRFNNDKELEEVydlli 245
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 112491279 98 -VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL-DGVSDRLVSR 154
Cdd:PRK06835 246 nCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELlKTYSERISSR 304
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
37-154 |
3.10e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.07 E-value: 3.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNM---------------YKSVDLL 101
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPDVL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 112491279 102 LLDDVQFLSGKERTQIEFFHIFNTLYLLEK-----QIILASDRHPQKLDGVSDRLVSR 154
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKseknlTVILTTNDEKDLGPALLRRRFDR 140
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
8-106 |
4.80e-09 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 56.41 E-value: 4.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 8 TLENFIVGEGNRLayEVVKEALENLGSlYNP------IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVE 81
Cdd:PRK08939 125 SLADIDLDDRDRL--DALMAALDFLEA-YPPgekvkgLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201
|
90 100
....*....|....*....|....*
gi 112491279 82 HLKKGTINEFRNMYKSVDLLLLDDV 106
Cdd:PRK08939 202 SISDGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
6-154 |
1.86e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 54.40 E-value: 1.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 6 KYTLENFIVgEGN----RLAYEVVKEALENL----GSLYNPIFIYGSVGTGKTHLLQAAGNE-AKKRGYRVIYSSaddFA 76
Cdd:PRK06921 80 KLTFKNFKT-EGKpqaiKDAYECAVEYVKDFekiqESRKNSIALLGQPGSGKTHLLTAAANElMRKKGVPVLYFP---FV 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 77 QAMVEhLKK--GTINEFRNMYKSVDLLLLDDV-QFLSGKERT---QIE-FFHIFNTLYLLEKQIILASDRHPQKLDGVSD 149
Cdd:PRK06921 156 EGFGD-LKDdfDLLEAKLNRMKKVEVLFIDDLfKPVNGKPRAtewQIEqMYSVLNYRYLNHKPILISSELTIDELLDIDE 234
|
....*
gi 112491279 150 RLVSR 154
Cdd:PRK06921 235 ALGSR 239
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
8-158 |
3.53e-08 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 53.14 E-value: 3.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 8 TLENFIVGEGNRLaYEVVKEALENLGSLYnpIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD---FAQAMVEHLk 84
Cdd:PRK08084 20 TFASFYPGDNDSL-LAALQNALRQEHSGY--IYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKrawFVPEVLEGM- 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112491279 85 kgtinefrnmyKSVDLLLLDDVQFLSGKERTQIEFFHIFNTlyLLEKQ---IILASDRHPQKLDGVSDRLVSRFEGG 158
Cdd:PRK08084 96 -----------EQLSLVCIDNIECIAGDELWEMAIFDLYNR--ILESGrtrLLITGDRPPRQLNLGLPDLASRLDWG 159
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
37-138 |
5.83e-07 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 49.75 E-value: 5.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 37 NPIFIyGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDfaqaMVEHLKK----GTINEFRNMYKSVDLLLLDDVQFLSGK 112
Cdd:pfam01695 94 NVVLL-GPPGVGKTHLAIALGVEACRAGYSVRFTSAAD----LVNQLKRahgdGKLTRKLQQLLKPDVLILDEWGYLPLD 168
|
90 100
....*....|....*....|....*..
gi 112491279 113 ERTQIEFFHIFNTLYllEKQ-IILASD 138
Cdd:pfam01695 169 QAEANLLFQVISKRY--EHRsIILTSN 193
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
3-106 |
6.22e-07 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 49.83 E-value: 6.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 3 LNPKYTLENFIV-GEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVE 81
Cdd:PRK12377 67 LHRKCSFANYQVqNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE 146
|
90 100
....*....|....*....|....*.
gi 112491279 82 HLKKGTINE-FRNMYKSVDLLLLDDV 106
Cdd:PRK12377 147 SYDNGQSGEkFLQELCKVDLLVLDEI 172
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
39-123 |
1.43e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 43.87 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY------SSADDFAQAMV-------------EHLKKgTINEFRNMYKSVD 99
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEQLPEVRDSVVFvdlpsgTSPKDLLRALLralglplsgrlskEELLA-ALQQLLLALAVAV 86
|
90 100
....*....|....*....|....
gi 112491279 100 LLLLDDVQFLSGKertQIEFFHIF 123
Cdd:pfam13401 87 VLIIDEAQHLSLE---ALEELRDL 107
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
8-117 |
1.68e-04 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 42.45 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 8 TLENF-IVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKG 86
Cdd:PRK07952 70 SFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNS 149
|
90 100 110
....*....|....*....|....*....|...
gi 112491279 87 TINEFR--NMYKSVDLLLLDDVQFLSGKERTQI 117
Cdd:PRK07952 150 ETSEEQllNDLSNVDLLVIDEIGVQTESRYEKV 182
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
39-141 |
6.38e-04 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 40.68 E-value: 6.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIE 118
Cdd:PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSV 188
|
90 100
....*....|....*....|...
gi 112491279 119 FFHIFNTLYllEKQIILASDRHP 141
Cdd:PRK08181 189 LFELISARY--ERRSILITANQP 209
|
|
| ATPase_2 |
pfam01637 |
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is ... |
36-104 |
1.25e-03 |
|
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is involved in binding ATP. There are eukaryote members as well as archaeal members in this family.
Pssm-ID: 376582 [Multi-domain] Cd Length: 222 Bit Score: 39.61 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 36 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY---------------SSADDFAQAMVEHLKKGTINEFRNMYKSVDL 100
Cdd:pfam01637 20 NLIYVIYGPEGCGKTALLRESIENLLDLGYYVIYydplrryfiskldrfEEVRRLAEALGIAVPKAELEESKLAFLAIEL 99
|
....
gi 112491279 101 LLLD 104
Cdd:pfam01637 100 LLEA 103
|
|
| PRK06526 |
PRK06526 |
transposase; Provisional |
26-127 |
2.53e-03 |
|
transposase; Provisional
Pssm-ID: 180607 Cd Length: 254 Bit Score: 38.70 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 26 KEALENLGSL------YNPIFIyGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVD 99
Cdd:PRK06526 83 RDTIAHLGTLdfvtgkENVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYP 161
|
90 100
....*....|....*....|....*...
gi 112491279 100 LLLLDDVQFLSGKERTQIEFFHIFNTLY 127
Cdd:PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRY 189
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
39-76 |
8.43e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 36.71 E-value: 8.43e-03
10 20 30
....*....|....*....|....*....|....*...
gi 112491279 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 76
Cdd:pfam13191 27 VLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDENL 64
|
|
| RecA-like_superfamily |
cd01120 |
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ... |
39-118 |
8.98e-03 |
|
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410865 [Multi-domain] Cd Length: 119 Bit Score: 35.56 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112491279 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEhlkkGTINEFRnmyksVDLLLLDDVQFLSGKERTQIE 118
Cdd:cd01120 1 ILITGPPGSGKTTLLLQFAEQALLSDEPVIFISFLDTILEAIE----DLIEEKK-----LDIIIIDSLSSLARASQGDRS 71
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
33-86 |
9.44e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 37.52 E-value: 9.44e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 112491279 33 GSLYNPIFIYGSVGTGKT----HLLQAAGNEAKKRGYRV--------IYSSADDFAQAMVEHLKKG 86
Cdd:COG1474 48 GERPSNVLIYGPTGTGKTavakYVLEELEEEAEERGVDVrvvyvncrQASTRYRVLSRILEELGSG 113
|
|
| |
