NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|115664|sp|P09116|]
View 

RecName: Full=Beta-casein; Flags: Precursor

Protein Classification

Casein domain-containing protein( domain architecture ID 10448710)

Casein domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Casein pfam00363
Casein;
136-224 6.93e-12

Casein;


:

Pssm-ID: 425638  Cd Length: 87  Bit Score: 59.48  E-value: 6.93e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115664     136 QILNLREMKNQHLLLPQLLpFMHQVFQPFPQTPIPYPQALLSLPQSKFMPIVPQVVPYPQRDMPIQALQLFQELLfptHQ 215
Cdd:pfam00363   1 QLLSLEEPENLHLPLSLQQ-LMHQKPQDMPQTPVFPKQPMLSVPQSKVQPYPQKVVQYYQRDMPPQALLLYQELV---MQ 76

                  ....*....
gi 115664     216 GYPVVQPIA 224
Cdd:pfam00363  77 YQKLLKPTV 85
 
Name Accession Description Interval E-value
Casein pfam00363
Casein;
136-224 6.93e-12

Casein;


Pssm-ID: 425638  Cd Length: 87  Bit Score: 59.48  E-value: 6.93e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115664     136 QILNLREMKNQHLLLPQLLpFMHQVFQPFPQTPIPYPQALLSLPQSKFMPIVPQVVPYPQRDMPIQALQLFQELLfptHQ 215
Cdd:pfam00363   1 QLLSLEEPENLHLPLSLQQ-LMHQKPQDMPQTPVFPKQPMLSVPQSKVQPYPQKVVQYYQRDMPPQALLLYQELV---MQ 76

                  ....*....
gi 115664     216 GYPVVQPIA 224
Cdd:pfam00363  77 YQKLLKPTV 85
 
Name Accession Description Interval E-value
Casein pfam00363
Casein;
136-224 6.93e-12

Casein;


Pssm-ID: 425638  Cd Length: 87  Bit Score: 59.48  E-value: 6.93e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115664     136 QILNLREMKNQHLLLPQLLpFMHQVFQPFPQTPIPYPQALLSLPQSKFMPIVPQVVPYPQRDMPIQALQLFQELLfptHQ 215
Cdd:pfam00363   1 QLLSLEEPENLHLPLSLQQ-LMHQKPQDMPQTPVFPKQPMLSVPQSKVQPYPQKVVQYYQRDMPPQALLLYQELV---MQ 76

                  ....*....
gi 115664     216 GYPVVQPIA 224
Cdd:pfam00363  77 YQKLLKPTV 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH