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Conserved domains on  [gi|1159611210|gb|AQY77062|]
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PSMB9 [Homo sapiens]

Protein Classification

proteasome subunit beta type-6 family protein( domain architecture ID 10132932)

proteasome subunit beta type-6 family protein, similar to proteasome subunit beta type-6 and type-9, is part of the 20S proteasome, a multi-subunit proteolytic complex that is central in nonlysosomal protein degradation in both the cytosol and nucleus.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
proteasome_beta_type_6 cd03762
proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the ...
 21-207 1.21e-118

proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


:

Pssm-ID: 239731  Cd Length: 188  Bit Score: 334.96  E-value: 1.21e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  21 TTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA 100
Cdd:cd03762     1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 101 NVVRNISYKYREDLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAI 179
Cdd:cd03762    81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYsIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNAL 160

                         170       180
                  ....*....|....*....|....*...
gi 1159611210 180 ALAMSRDGSSGGVIYLVTITAAGVDHRV 207
Cdd:cd03762   161 SLAMSRDGSSGGVIRLVIITKDGVERKF 188
 
Name Accession Description Interval E-value
proteasome_beta_type_6 cd03762
proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the ...
 21-207 1.21e-118

proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239731  Cd Length: 188  Bit Score: 334.96  E-value: 1.21e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  21 TTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA 100
Cdd:cd03762     1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 101 NVVRNISYKYREDLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAI 179
Cdd:cd03762    81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYsIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNAL 160

                         170       180
                  ....*....|....*....|....*...
gi 1159611210 180 ALAMSRDGSSGGVIYLVTITAAGVDHRV 207
Cdd:cd03762   161 SLAMSRDGSSGGVIRLVIITKDGVERKF 188
Proteasome pfam00227
Proteasome subunit; The proteasome is a multisubunit structure that degrades proteins. Protein ...
 17-198 4.15e-51

Proteasome subunit; The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologs vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homolog (BPH).


Pssm-ID: 459721 [Multi-domain]  Cd Length: 188  Bit Score: 163.89  E-value: 4.15e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  17 VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRV-FDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPL 95
Cdd:pfam00227   1 VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDtVEKIFKIDDHIGMAFAGLAADARTLVDRARAEAQLYRLRYGRPIP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  96 VLAAANVVRNIS----YKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEE 170
Cdd:pfam00227  81 VELAARIADLLQaytqYSGRRPFGVSLLIAGYDEDGGPHLYQIdPSGSYIEYKATAIGSGSQYAYGVLEKLYRPDLTLEE 160

                         170       180
                  ....*....|....*....|....*...
gi 1159611210 171 CRRFTTDAIALAMSRDGSSGGVIYLVTI 198
Cdd:pfam00227 161 AVELAVKALKEAIDRDALSGGNIEVAVI 188
PRE1 COG0638
20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, ...
 2-204 2.87e-35

20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440403 [Multi-domain]  Cd Length: 229  Bit Score: 124.49  E-value: 2.87e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210   2 LRAGAPTGDLPRAG----EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVAD 77
Cdd:COG0638    13 ITIFSPDGRLYQVEyareAVKRGTTTVGIKTKDGVVLAADRRATMGNLIASKSIEKIFKIDDHIGVAIAGLVADARELVR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  78 MAAYQLELHGIELEEPPLVLAAANVVRNI-----SYKYReDLSAHLMVAGWDqREGGQVYGT-LGGMLTRQPFAIGGSGS 151
Cdd:COG0638    93 LARVEAQLYELRYGEPISVEGLAKLLSDLlqgytQYGVR-PFGVALLIGGVD-DGGPRLFSTdPSGGLYEEKAVAIGSGS 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1159611210 152 TFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVD 204
Cdd:COG0638   171 PFARGVLEKEYREDLSLDEAVELALRALYSAAERDSASGDGIDVAVITEDGFR 223
arc_protsome_B TIGR03634
proteasome endopeptidase complex, archaeal, beta subunit; This protein family describes the ...
 20-203 1.24e-28

proteasome endopeptidase complex, archaeal, beta subunit; This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated. [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 274690  Cd Length: 185  Bit Score: 106.14  E-value: 1.24e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAA 99
Cdd:TIGR03634   1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 100 ANVVRNISYKYR-EDLSAHLMVAGWDQrEGGQVYGT--LGGMlTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTT 176
Cdd:TIGR03634  81 ATLLSNILNSNRfFPFIVQLLVGGVDE-EGPHLYSLdpAGGI-IEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAV 158

                         170       180
                  ....*....|....*....|....*..
gi 1159611210 177 DAIALAMSRDGSSGGVIYLVTITAAGV 203
Cdd:TIGR03634 159 RAIKSAIERDVASGNGIDVAVITKDGV 185
PTZ00488 PTZ00488
Proteasome subunit beta type-5; Provisional
 9-202 4.76e-28

Proteasome subunit beta type-5; Provisional


Pssm-ID: 185666  Cd Length: 247  Bit Score: 106.23  E-value: 4.76e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210   9 GDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGI 88
Cdd:PTZ00488   28 GDANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYEL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  89 ELEEPPLVLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIgGSGSTFIYGYVDAAYKPGM 166
Cdd:PTZ00488  108 RNGELISVAAASKILANIVWNYKGmGLSMGTMICGWDKKGPGLFYvDNDGTRLHGNMFSC-GSGSTYAYGVLDAGFKWDL 186

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1159611210 167 SPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAG 202
Cdd:PTZ00488  187 NDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG 222
 
Name Accession Description Interval E-value
proteasome_beta_type_6 cd03762
proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the ...
 21-207 1.21e-118

proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239731  Cd Length: 188  Bit Score: 334.96  E-value: 1.21e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  21 TTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA 100
Cdd:cd03762     1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 101 NVVRNISYKYREDLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAI 179
Cdd:cd03762    81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYsIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNAL 160

                         170       180
                  ....*....|....*....|....*...
gi 1159611210 180 ALAMSRDGSSGGVIYLVTITAAGVDHRV 207
Cdd:cd03762   161 SLAMSRDGSSGGVIRLVIITKDGVERKF 188
proteasome_beta cd01912
proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central ...
 21-206 5.86e-70

proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 238893  Cd Length: 189  Bit Score: 211.92  E-value: 5.86e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  21 TTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA 100
Cdd:cd01912     1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 101 NVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYG-TLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDA 178
Cdd:cd01912    81 NLLSNILYSYRGfPYYVSLIVGGVDKGGGPFLYYvDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKA 160

                         170       180
                  ....*....|....*....|....*...
gi 1159611210 179 IALAMSRDGSSGGVIYLVTITAAGVDHR 206
Cdd:cd01912   161 IDSAIERDLSSGGGVDVAVITKDGVEEL 188
proteasome_protease_HslV cd01906
proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta ...
 21-198 2.34e-55

proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide.


Pssm-ID: 238887  Cd Length: 182  Bit Score: 174.22  E-value: 2.34e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  21 TTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA 100
Cdd:cd01906     1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 101 NVVRNISYKYRE---DLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTT 176
Cdd:cd01906    81 KLLANLLYEYTQslrPLGVSLLVAGVDEEGGPQLYSVdPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELAL 160

                         170       180
                  ....*....|....*....|..
gi 1159611210 177 DAIALAMSRDGSSGGVIYLVTI 198
Cdd:cd01906   161 KALKSALERDLYSGGNIEVAVI 182
Proteasome pfam00227
Proteasome subunit; The proteasome is a multisubunit structure that degrades proteins. Protein ...
 17-198 4.15e-51

Proteasome subunit; The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologs vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homolog (BPH).


Pssm-ID: 459721 [Multi-domain]  Cd Length: 188  Bit Score: 163.89  E-value: 4.15e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  17 VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRV-FDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPL 95
Cdd:pfam00227   1 VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDtVEKIFKIDDHIGMAFAGLAADARTLVDRARAEAQLYRLRYGRPIP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  96 VLAAANVVRNIS----YKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEE 170
Cdd:pfam00227  81 VELAARIADLLQaytqYSGRRPFGVSLLIAGYDEDGGPHLYQIdPSGSYIEYKATAIGSGSQYAYGVLEKLYRPDLTLEE 160

                         170       180
                  ....*....|....*....|....*...
gi 1159611210 171 CRRFTTDAIALAMSRDGSSGGVIYLVTI 198
Cdd:pfam00227 161 AVELAVKALKEAIDRDALSGGNIEVAVI 188
PRE1 COG0638
20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, ...
 2-204 2.87e-35

20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440403 [Multi-domain]  Cd Length: 229  Bit Score: 124.49  E-value: 2.87e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210   2 LRAGAPTGDLPRAG----EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVAD 77
Cdd:COG0638    13 ITIFSPDGRLYQVEyareAVKRGTTTVGIKTKDGVVLAADRRATMGNLIASKSIEKIFKIDDHIGVAIAGLVADARELVR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  78 MAAYQLELHGIELEEPPLVLAAANVVRNI-----SYKYReDLSAHLMVAGWDqREGGQVYGT-LGGMLTRQPFAIGGSGS 151
Cdd:COG0638    93 LARVEAQLYELRYGEPISVEGLAKLLSDLlqgytQYGVR-PFGVALLIGGVD-DGGPRLFSTdPSGGLYEEKAVAIGSGS 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1159611210 152 TFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVD 204
Cdd:COG0638   171 PFARGVLEKEYREDLSLDEAVELALRALYSAAERDSASGDGIDVAVITEDGFR 223
Ntn_hydrolase cd01901
The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are ...
 21-179 1.19e-34

The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences.


Pssm-ID: 238884 [Multi-domain]  Cd Length: 164  Bit Score: 120.96  E-value: 1.19e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  21 TTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA 100
Cdd:cd01901     1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 101 NVVRNISYKYRE--DLSAHLMVAGWDQREGGQVYGTLGGMLTRQPFAI-GGSGSTFIYGYVDAAYKPGMSPEECRRFTTD 177
Cdd:cd01901    81 KELAKLLQVYTQgrPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVaTGSRSQRAKSLLEKLYKPDMTLEEAVELALK 160


                  ..
gi 1159611210 178 AI 179
Cdd:cd01901   161 AL 162
proteasome_beta_type_7 cd03763
proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the ...
 21-205 1.76e-33

proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239732  Cd Length: 189  Bit Score: 118.84  E-value: 1.76e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  21 TTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA 100
Cdd:cd03763     1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 101 NVVRNISYKYREDLSAHLMVAGWDQrEGGQVYGTLG-GMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAI 179
Cdd:cd03763    81 TMLKQHLFRYQGHIGAALVLGGVDY-TGPHLYSIYPhGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAI 159

                         170       180
                  ....*....|....*....|....*.
gi 1159611210 180 ALAMSRDGSSGGVIYLVTITAAGVDH 205
Cdd:cd03763   160 EAGIFNDLGSGSNVDLCVITKDGVEY 185
arc_protsome_B TIGR03634
proteasome endopeptidase complex, archaeal, beta subunit; This protein family describes the ...
 20-203 1.24e-28

proteasome endopeptidase complex, archaeal, beta subunit; This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated. [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 274690  Cd Length: 185  Bit Score: 106.14  E-value: 1.24e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAA 99
Cdd:TIGR03634   1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 100 ANVVRNISYKYR-EDLSAHLMVAGWDQrEGGQVYGT--LGGMlTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTT 176
Cdd:TIGR03634  81 ATLLSNILNSNRfFPFIVQLLVGGVDE-EGPHLYSLdpAGGI-IEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAV 158

                         170       180
                  ....*....|....*....|....*..
gi 1159611210 177 DAIALAMSRDGSSGGVIYLVTITAAGV 203
Cdd:TIGR03634 159 RAIKSAIERDVASGNGIDVAVITKDGV 185
proteasome_beta_archeal cd03764
Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the ...
 21-202 1.45e-28

Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239733  Cd Length: 188  Bit Score: 105.80  E-value: 1.45e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  21 TTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA 100
Cdd:cd03764     1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 101 NVVRNI--SYKYREDLsAHLMVAGWDQrEGGQVYGT--LGGMlTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTT 176
Cdd:cd03764    81 TLLSNIlnSSKYFPYI-VQLLIGGVDE-EGPHLYSLdpLGSI-IEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAI 157

                         170       180
                  ....*....|....*....|....*.
gi 1159611210 177 DAIALAMSRDGSSGGVIYLVTITAAG 202
Cdd:cd03764   158 RAIKSAIERDSASGDGIDVVVITKDG 183
proteasome_beta_type_5 cd03761
proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the ...
 21-206 3.36e-28

proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239730  Cd Length: 188  Bit Score: 105.02  E-value: 3.36e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  21 TTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA 100
Cdd:cd03761     1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 101 NVVRNISYKYR-EDLSAHLMVAGWDQREGGQVY----GT-LGGMLtrqpFAIGgSGSTFIYGYVDAAYKPGMSPEECRRF 174
Cdd:cd03761    81 KLLSNMLYQYKgMGLSMGTMICGWDKTGPGLYYvdsdGTrLKGDL----FSVG-SGSTYAYGVLDSGYRYDLSVEEAYDL 155

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1159611210 175 TTDAIALAMSRDGSSGGVIYLVTITAAGVDHR 206
Cdd:cd03761   156 ARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187
PTZ00488 PTZ00488
Proteasome subunit beta type-5; Provisional
 9-202 4.76e-28

Proteasome subunit beta type-5; Provisional


Pssm-ID: 185666  Cd Length: 247  Bit Score: 106.23  E-value: 4.76e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210   9 GDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGI 88
Cdd:PTZ00488   28 GDANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYEL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  89 ELEEPPLVLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIgGSGSTFIYGYVDAAYKPGM 166
Cdd:PTZ00488  108 RNGELISVAAASKILANIVWNYKGmGLSMGTMICGWDKKGPGLFYvDNDGTRLHGNMFSC-GSGSTYAYGVLDAGFKWDL 186

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1159611210 167 SPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAG 202
Cdd:PTZ00488  187 NDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG 222
proteasome_beta_type_3 cd03759
proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the ...
 18-199 3.91e-16

proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239728  Cd Length: 195  Bit Score: 73.43  E-value: 3.91e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  18 HTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVL 97
Cdd:cd03759     1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  98 AAANVVRNISYKYREdlSAHLM---VAGWDqrEGGQVY----GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEE 170
Cdd:cd03759    81 TFSSLISSLLYEKRF--GPYFVepvVAGLD--PDGKPFictmDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDE 156

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1159611210 171 CRRFTTDAIALAMSRDGSS--GGVIYLVTIT 199
Cdd:cd03759   157 LFETISQALLSAVDRDALSgwGAVVYIITKD 187
20S_bact_beta TIGR03690
proteasome, beta subunit, bacterial type; Members of this family are the beta subunit of the ...
 20-202 6.07e-13

proteasome, beta subunit, bacterial type; Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model. [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 163402 [Multi-domain]  Cd Length: 219  Bit Score: 65.11  E-value: 6.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMaaYQLEL-HGIELEEPPLVLA 98
Cdd:TIGR03690   2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRL--FQVELeHYEKIEGVPLTLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  99 A-----ANVVRNISYKYREDLSAHLMVAGWDQ-REGGQV--YGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEE 170
Cdd:TIGR03690  80 GkanrlAAMVRGNLPAAMQGLAVVPLLAGYDLdAGAGRIfsYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1159611210 171 CRRFTTDAIALAMSRDGSSGGV-----IY--LVTITAAG 202
Cdd:TIGR03690 160 ALRVAVEALYDAADDDSATGGPdlvrgIYptVVVITADG 198
proteasome_beta_type_2 cd03758
proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the ...
 32-170 3.19e-11

proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239727  Cd Length: 193  Bit Score: 59.91  E-value: 3.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  32 VVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVAD-----MAAYQLElHGIELEepplVLAAANVVR-N 105
Cdd:cd03758    13 VILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEyiqknIQLYKMR-NGYELS----PKAAANFTRrE 87

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1159611210 106 ISYKYREDLSAH--LMVAGWDQREGGQVY-----GTLggmlTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEE 170
Cdd:cd03758    88 LAESLRSRTPYQvnLLLAGYDKVEGPSLYyidylGTL----VKVPYAAHGYGAYFCLSILDRYYKPDMTVEE 155
proteasome_beta_type_1 cd03757
proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the ...
 20-208 9.97e-10

proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239726  Cd Length: 212  Bit Score: 56.11  E-value: 9.97e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAA 99
Cdd:cd03757     8 GGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAI 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210 100 ANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYG-TLGGMLTRQPFAIGGSGSTFIYGYVD----------AAYKPgMS 167
Cdd:cd03757    88 AQLLSTILYSRRFfPYYVFNILAGIDEEGKGVVYSyDPVGSYERETYSAGGSASSLIQPLLDnqvgrknqnnVERTP-LS 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1159611210 168 PEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVI 208
Cdd:cd03757   167 LEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETF 207
proteasome_alpha_archeal cd03756
proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central ...
 14-198 1.58e-05

proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239725 [Multi-domain]  Cd Length: 211  Bit Score: 44.24  E-value: 1.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  14 AGE-VHTGTTIMAVEFDGGVVMGSDSRVsAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEE 92
Cdd:cd03756    21 AREaVKRGTTALGIKCKEGVVLAVDKRI-TSKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGE 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  93 PPLVLAAANVVRNISYKYRE-----DLSAHLMVAGWDQReGGQVYGT-LGGMLTR-QPFAIgGSGSTFIYGYVDAAYKPG 165
Cdd:cd03756   100 PIDVEVLVKKICDLKQQYTQhggvrPFGVALLIAGVDDG-GPRLFETdPSGAYNEyKATAI-GSGRQAVTEFLEKEYKED 177

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1159611210 166 MSPEECRRFTTDAIALAMSRDGSSGGV-IYLVTI 198
Cdd:cd03756   178 MSLEEAIELALKALYAALEENETPENVeIAYVTV 211
protease_HslV cd01913
Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system ...
 21-87 3.08e-05

Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.


Pssm-ID: 238894  Cd Length: 171  Bit Score: 42.95  E-value: 3.08e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1159611210  21 TTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPL-HERIYCALSGSAADAQAVADMAAYQLELHG 87
Cdd:cd01913     1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLyNGKVIAGFAGSTADAFTLFERFEAKLEQYP 68
proteasome_alpha_type_5 cd03753
proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central ...
 20-152 3.29e-04

proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239722 [Multi-domain]  Cd Length: 213  Bit Score: 40.40  E-value: 3.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  20 GTTIMAVEFDGGVVMGSDSRVSAgEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAA 99
Cdd:cd03753    27 GSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESV 105

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1159611210 100 ANVVRNISYKYRED----------LSAHLMVAGWDQrEGGQVYGT-LGGMLTRQPFAIGGSGST 152
Cdd:cd03753   106 TQAVSDLALQFGEGddgkkamsrpFGVALLIAGVDE-NGPQLFHTdPSGTFTRCDAKAIGSGSE 168
PTZ00246 PTZ00246
proteasome subunit alpha; Provisional
 29-134 6.03e-04

proteasome subunit alpha; Provisional


Pssm-ID: 173491 [Multi-domain]  Cd Length: 253  Bit Score: 39.84  E-value: 6.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  29 DGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISY 108
Cdd:PTZ00246   40 KEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQ 119

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1159611210 109 KYRE-----DLSAHLMVAGWDQREGGQVYGT 134
Cdd:PTZ00246  120 SYTQfgglrPFGVSFLFAGYDENLGYQLYHT 150
proteasome_alpha_type_7 cd03755
proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central ...
 17-179 6.67e-04

proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239724 [Multi-domain]  Cd Length: 207  Bit Score: 39.27  E-value: 6.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  17 VHTGTTIMAVEFDGGVVMGSDSRvSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLV 96
Cdd:cd03755    24 VRKGTTAVGVRGKDCVVLGVEKK-SVAKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  97 LAAANVVRNISYKY-----REDLSAHLMVAGWDQREGGQVYGT--LGGMLTRQPFAIGGSGSTfIYGYVDAAYKPGMSPE 169
Cdd:cd03755   103 EYITRYIAGLQQRYtqsggVRPFGISTLIVGFDPDGTPRLYQTdpSGTYSAWKANAIGRNSKT-VREFLEKNYKEEMTRD 181

                         170
                  ....*....|
gi 1159611210 170 ECRRFTTDAI 179
Cdd:cd03755   182 DTIKLAIKAL 191
proteasome_beta_type_4 cd03760
proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the ...
 19-73 8.02e-04

proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239729  Cd Length: 197  Bit Score: 39.09  E-value: 8.02e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1159611210  19 TGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQ 73
Cdd:cd03760     1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQ 55
proteasome_alpha_type_4 cd03752
proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central ...
 18-184 1.57e-03

proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.


Pssm-ID: 239721 [Multi-domain]  Cd Length: 213  Bit Score: 38.48  E-value: 1.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  18 HTGTTIMAVEFDGgVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPplvL 97
Cdd:cd03752    28 HAGTCLGILAKDG-IVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEP---I 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1159611210  98 AAANVVRNIS--------YKYREDLSAHLMVAGWDQREGGQVY-----GTLGGMltrQPFAIGGSGSTfIYGYVDAAYKP 164
Cdd:cd03752   104 PVEQLVQRLCdikqgytqYGGLRPFGVSFLYAGWDKHYGFQLYqsdpsGNYSGW---KATAIGNNNQA-AQSLLKQDYKD 179

                         170       180
                  ....*....|....*....|
gi 1159611210 165 GMSPEEcrrfttdAIALAMS 184
Cdd:cd03752   180 DMTLEE-------ALALAVK 192
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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