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Conserved domains on  [gi|1174690866|ref|XP_020559548|]
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L-lactate dehydrogenase C chain isoform X2 [Oryzias latipes]

Protein Classification

L-lactate dehydrogenase( domain architecture ID 10143083)

L-lactate dehydrogenase catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LDH_1 cd05293
A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes ...
34-330 0e+00

A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


:

Pssm-ID: 133429 [Multi-domain]  Cd Length: 312  Bit Score: 550.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:cd05293    16 MACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQR 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:cd05293    96 NVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGE 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLNPEIGTDCDKENWQETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHP 273
Cdd:cd05293   176 HGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLVDAILRNTGRVHS 255
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1174690866 274 VSTMVKGMYGISEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQKD 330
Cdd:cd05293   256 VSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQKQ 312
 
Name Accession Description Interval E-value
LDH_1 cd05293
A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes ...
34-330 0e+00

A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133429 [Multi-domain]  Cd Length: 312  Bit Score: 550.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:cd05293    16 MACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQR 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:cd05293    96 NVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGE 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLNPEIGTDCDKENWQETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHP 273
Cdd:cd05293   176 HGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLVDAILRNTGRVHS 255
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1174690866 274 VSTMVKGMYGISEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQKD 330
Cdd:cd05293   256 VSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQKQ 312
PLN02602 PLN02602
lactate dehydrogenase
14-331 1.15e-157

lactate dehydrogenase


Pssm-ID: 178212 [Multi-domain]  Cd Length: 350  Bit Score: 444.98  E-value: 1.15e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  14 SGPPEPPRN--KVTVVGVGQVGMACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSR 91
Cdd:PLN02602   28 SSPPSPTRRhtKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSD 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  92 IVVVTAGVRQQEGESRLNLVQRNVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARF 171
Cdd:PLN02602  108 LCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRF 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 172 RFLMADKLGIHASSFNGWILGEHGDTSVPVWSGTNVAGVNLQTLNPEIGTDCDKENWQETHKMVVNSAYEVIRLKGYTNW 251
Cdd:PLN02602  188 RFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYTSW 267
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 252 AIGLSVADLIESLMKNLNRIHPVSTMVKGMYGISE-EVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQKD 330
Cdd:PLN02602  268 AIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEgDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTLWEVQSQ 347

                  .
gi 1174690866 331 L 331
Cdd:PLN02602  348 L 348
L-LDH-NAD TIGR01771
L-lactate dehydrogenase; This model represents the NAD-dependent L-lactate dehydrogenases from ...
34-326 4.50e-152

L-lactate dehydrogenase; This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]


Pssm-ID: 273796 [Multi-domain]  Cd Length: 299  Bit Score: 428.93  E-value: 4.50e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:TIGR01771   9 SSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGR 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:TIGR01771  89 NVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGE 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLNPEIGTDCDKENWqETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHP 273
Cdd:TIGR01771 169 HGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLE-EIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAILHDENRVLP 247
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1174690866 274 VSTMVKGMYGISeEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWD 326
Cdd:TIGR01771 248 VSAYLDGEYGIK-DVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLKK 299
Mdh COG0039
Malate/lactate dehydrogenase [Energy production and conversion]; Malate/lactate dehydrogenase ...
34-324 2.79e-129

Malate/lactate dehydrogenase [Energy production and conversion]; Malate/lactate dehydrogenase is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 439809 [Multi-domain]  Cd Length: 302  Bit Score: 371.27  E-value: 2.79e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:COG0039    13 STLAFRLASGGLADELVLIDINEGKAEGEALDLADAFPLLGFDVKITAGDYEDLADADVVVITAGAPRKPGMSRLDLLEA 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:COG0039    93 NAKIFKSVGEAIKKYAPDAIVLVVTNPVDVMTYIAQKASGLPKERVIGMGTVLDSARFRSFLAEKLGVSPRDVHAYVLGE 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLnpeigTDCDKENWQETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHP 273
Cdd:COG0039   173 HGDSMVPLWSHATVGGIPLTEL-----IKETDEDLDEIIERVRKGGAEIIEGKGSTYYAIAAAAARIVEAILRDEKRVLP 247
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1174690866 274 VSTMVKGMYGIsEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTL 324
Cdd:COG0039   248 VSVYLDGEYGI-EDVYLGVPVVIGRNGVEKIVELELTDEERAKLDASAEEL 297
Ldh_1_N pfam00056
lactate/malate dehydrogenase, NAD binding domain; L-lactate dehydrogenases are metabolic ...
34-161 1.59e-58

lactate/malate dehydrogenase, NAD binding domain; L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.


Pssm-ID: 395010 [Multi-domain]  Cd Length: 141  Bit Score: 185.12  E-value: 1.59e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:pfam00056  14 QSLAFLLANKGLADELVLYDIVKEKLEGVAMDLSHGSTFLLVPGIVGGGDYEDLKDADVVVITAGVPRKPGMTRLDLLNV 93
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIG 161
Cdd:pfam00056  94 NAKIFKSIGPALAKYAPNAIVLVVSNPVDILTYVAWKASGFPPNRVFG 141
 
Name Accession Description Interval E-value
LDH_1 cd05293
A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes ...
34-330 0e+00

A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133429 [Multi-domain]  Cd Length: 312  Bit Score: 550.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:cd05293    16 MACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQR 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:cd05293    96 NVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGE 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLNPEIGTDCDKENWQETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHP 273
Cdd:cd05293   176 HGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLVDAILRNTGRVHS 255
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1174690866 274 VSTMVKGMYGISEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQKD 330
Cdd:cd05293   256 VSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQKQ 312
PLN02602 PLN02602
lactate dehydrogenase
14-331 1.15e-157

lactate dehydrogenase


Pssm-ID: 178212 [Multi-domain]  Cd Length: 350  Bit Score: 444.98  E-value: 1.15e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  14 SGPPEPPRN--KVTVVGVGQVGMACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSR 91
Cdd:PLN02602   28 SSPPSPTRRhtKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSD 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  92 IVVVTAGVRQQEGESRLNLVQRNVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARF 171
Cdd:PLN02602  108 LCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRF 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 172 RFLMADKLGIHASSFNGWILGEHGDTSVPVWSGTNVAGVNLQTLNPEIGTDCDKENWQETHKMVVNSAYEVIRLKGYTNW 251
Cdd:PLN02602  188 RFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYTSW 267
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 252 AIGLSVADLIESLMKNLNRIHPVSTMVKGMYGISE-EVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQKD 330
Cdd:PLN02602  268 AIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEgDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTLWEVQSQ 347

                  .
gi 1174690866 331 L 331
Cdd:PLN02602  348 L 348
L-LDH-NAD TIGR01771
L-lactate dehydrogenase; This model represents the NAD-dependent L-lactate dehydrogenases from ...
34-326 4.50e-152

L-lactate dehydrogenase; This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]


Pssm-ID: 273796 [Multi-domain]  Cd Length: 299  Bit Score: 428.93  E-value: 4.50e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:TIGR01771   9 SSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGR 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:TIGR01771  89 NVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGE 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLNPEIGTDCDKENWqETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHP 273
Cdd:TIGR01771 169 HGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLE-EIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAILHDENRVLP 247
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1174690866 274 VSTMVKGMYGISeEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWD 326
Cdd:TIGR01771 248 VSAYLDGEYGIK-DVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLKK 299
LDH_like cd00300
L-lactate dehydrogenase-like enzymes; Members of this subfamily are tetrameric NAD-dependent ...
34-329 7.85e-143

L-lactate dehydrogenase-like enzymes; Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133418 [Multi-domain]  Cd Length: 300  Bit Score: 405.50  E-value: 7.85e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:cd00300    11 AAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKPGETRLDLINR 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:cd00300    91 NAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGE 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLNPEigtdcDKENWQETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHP 273
Cdd:cd00300   171 HGDSQVVAWSTATVGGLPLEELAPF-----TKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKSILLDERRVLP 245
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1174690866 274 VSTMVKGMYGIsEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQK 329
Cdd:cd00300   246 VSAVQEGQYGI-EDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKEVLN 300
LDH_2 cd05292
A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes ...
34-331 5.16e-137

A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133428 [Multi-domain]  Cd Length: 308  Bit Score: 391.08  E-value: 5.16e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKtPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:cd05292    13 STTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVK-PVRIYAGDYADCKGADVVVITAGANQKPGETRLDLLKR 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:cd05292    92 NVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGE 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLNPEIGTDCDKENWQETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHP 273
Cdd:cd05292   172 HGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYYAIGLALARIVEAILRDENSVLT 251
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1174690866 274 VSTMVKGMYGIsEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQKDL 331
Cdd:cd05292   252 VSSLLDGQYGI-KDVALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKEAIESL 308
Mdh COG0039
Malate/lactate dehydrogenase [Energy production and conversion]; Malate/lactate dehydrogenase ...
34-324 2.79e-129

Malate/lactate dehydrogenase [Energy production and conversion]; Malate/lactate dehydrogenase is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 439809 [Multi-domain]  Cd Length: 302  Bit Score: 371.27  E-value: 2.79e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:COG0039    13 STLAFRLASGGLADELVLIDINEGKAEGEALDLADAFPLLGFDVKITAGDYEDLADADVVVITAGAPRKPGMSRLDLLEA 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:COG0039    93 NAKIFKSVGEAIKKYAPDAIVLVVTNPVDVMTYIAQKASGLPKERVIGMGTVLDSARFRSFLAEKLGVSPRDVHAYVLGE 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLnpeigTDCDKENWQETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHP 273
Cdd:COG0039   173 HGDSMVPLWSHATVGGIPLTEL-----IKETDEDLDEIIERVRKGGAEIIEGKGSTYYAIAAAAARIVEAILRDEKRVLP 247
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1174690866 274 VSTMVKGMYGIsEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTL 324
Cdd:COG0039   248 VSVYLDGEYGI-EDVYLGVPVVIGRNGVEKIVELELTDEERAKLDASAEEL 297
ldh PRK00066
L-lactate dehydrogenase; Reviewed
35-331 3.01e-115

L-lactate dehydrogenase; Reviewed


Pssm-ID: 178836 [Multi-domain]  Cd Length: 315  Bit Score: 336.09  E-value: 3.01e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  35 ACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKtPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQRN 114
Cdd:PRK00066   20 SYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTS-PTKIYAGDYSDCKDADLVVITAGAPQKPGETRLDLVEKN 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 115 VNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGEH 194
Cdd:PRK00066   99 LKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEH 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 195 GDTSVPVWSGTNVAGVNLQTLNPEIGtDCDKENWQETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHPV 274
Cdd:PRK00066  179 GDTEFPVWSHANVAGVPLEEYLEENE-QYDEEDLDEIFENVRDAAYEIIEKKGATYYGIAMALARITKAILNNENAVLPV 257
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1174690866 275 STMVKGMYGIsEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQKDL 331
Cdd:PRK00066  258 SAYLEGQYGE-EDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLKEIMDEA 313
HicDH_like cd05291
L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases; ...
34-330 8.27e-109

L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases; L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133427 [Multi-domain]  Cd Length: 306  Bit Score: 319.41  E-value: 8.27e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:cd05291    13 SSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQKPGETRLDLLEK 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:cd05291    93 NAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGE 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLNPEIGTdcDKENWQETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHP 273
Cdd:cd05291   173 HGDSQFVAWSTVTVGGKPLLDLLKEGKL--SELDLDEIEEDVRKAGYEIINGKGATYYGIATALARIVKAILNDENAILP 250
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1174690866 274 VSTMVKGMYGISeEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQKD 330
Cdd:cd05291   251 VSAYLDGEYGEK-DVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKENIKK 306
PRK06223 PRK06223
malate dehydrogenase; Reviewed
35-324 2.39e-95

malate dehydrogenase; Reviewed


Pssm-ID: 180477 [Multi-domain]  Cd Length: 307  Bit Score: 285.10  E-value: 2.39e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  35 ACAVSILLKELADeLALVDVVEDKLKGEMMDLQHGS-LFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:PRK06223   16 TLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEAApVEGFDTKITGTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGI 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:PRK06223   95 NAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGG 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLNPeigtdcdKENWQETHKMVVNSAYEVIRL--KGYTNWAIGLSVADLIESLMKNLNRI 271
Cdd:PRK06223  175 HGDSMVPLVRYSTVGGIPLEDLLS-------KEKLDEIVERTRKGGAEIVGLlkTGSAYYAPAASIAEMVEAILKDKKRV 247
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1174690866 272 HPVSTMVKGMYGIsEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTL 324
Cdd:PRK06223  248 LPCSAYLEGEYGV-KDVYVGVPVKLGKNGVEKIIELELDDEEKAAFDKSVEAV 299
LDH-like_MDH cd01339
L-lactate dehydrogenase-like malate dehydrogenase proteins; Members of this subfamily have an ...
35-324 9.32e-89

L-lactate dehydrogenase-like malate dehydrogenase proteins; Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133424 [Multi-domain]  Cd Length: 300  Bit Score: 268.19  E-value: 9.32e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  35 ACAVSILLKELADeLALVDVVEDKLKGEMMDLQH-GSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:cd01339    12 TLAQLLALKELGD-VVLLDIVEGLPQGKALDISQaAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPRKPGMSRDDLLGT 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:cd01339    91 NAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTLNPeigtdcdKENWQETHKMVVNSAYEVIRLKGYT--NWAIGLSVADLIESLMKNLNRI 271
Cdd:cd01339   171 HGDTMVPLPRYSTVGGIPLTELIT-------KEEIDEIVERTRNGGAEIVNLLKTGsaYYAPAAAIAEMVEAILKDKKRV 243
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1174690866 272 HPVSTMVKGMYGISeEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTL 324
Cdd:cd01339   244 LPCSAYLEGEYGIK-DIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESV 295
LDH_MDH_like cd00650
NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family; Members ...
34-329 1.24e-84

NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family; Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133419 [Multi-domain]  Cd Length: 263  Bit Score: 256.09  E-value: 1.24e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKE--LADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKD-YSVTANSRIVVVTAGVRQQEGESRLNL 110
Cdd:cd00650    12 PALAFGLADGSvlLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDpYEAFKDADVVIITAGVGRKPGMGRLDL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 111 VQRNVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTnLDSARFRFLMADKLGIHASSFNGWI 190
Cdd:cd00650    92 LKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKLGVDPDDVKVYI 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 191 LGEHGDTSVPVWSGTNvagvnlqtlnpeigtdcdkenwqethkmvvnsayevirlkgytnwaIGLSVADLIESLMKNLNR 270
Cdd:cd00650   171 LGEHGGSQVPDWSTVR----------------------------------------------IATSIADLIRSLLNDEGE 204
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1174690866 271 IHPVSTMVKGMYGISEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQK 329
Cdd:cd00650   205 ILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKKELE 263
LDH_3 cd05290
A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes ...
45-324 3.56e-76

A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133426 [Multi-domain]  Cd Length: 307  Bit Score: 236.07  E-value: 3.56e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  45 LADELALVDVVEDKLKGEMMDLQHGSLFLKTPKI-VASKDYSVTANSRIVVVTAG--VRQQEGESRLNLVQRNVNIFKHI 121
Cdd:cd05290    23 LFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTkIRAGDYDDCADADIIVITAGpsIDPGNTDDRLDLAQTNAKIIREI 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 122 VPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGEHGDTSVPV 201
Cdd:cd05290   103 MGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEHGSHAFPV 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 202 WSGTNVAGVNLQTLNPEIGTD-CDKENWQEThkmVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNRIHPVSTMVKG 280
Cdd:cd05290   183 WSLVNIAGLPLDELEALFGKEpIDKDELLEE---VVQAAYDVFNRKGWTNAGIAKSASRLIKAILLDERSILPVCTLLSG 259
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1174690866 281 MYGISeEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTL 324
Cdd:cd05290   260 EYGLS-DVALSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAI 302
MalateDH_bact TIGR01763
malate dehydrogenase, NAD-dependent; This enzyme converts malate into oxaloacetate in the ...
43-331 3.04e-61

malate dehydrogenase, NAD-dependent; This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized, and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. [Energy metabolism, TCA cycle]


Pssm-ID: 273792 [Multi-domain]  Cd Length: 305  Bit Score: 197.78  E-value: 3.04e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  43 KELADeLALVDVVEDKLKGEMMDL-QHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQRNVNIFKHI 121
Cdd:TIGR01763  23 KELAD-LVLLDVVEGIPQGKALDMyEASPVGGFDTKVTGTNNYADTANSDIVVITAGLPRKPGMSREDLLSMNAGIVREV 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 122 VPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGEHGDTSVPV 201
Cdd:TIGR01763 102 TGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGHGDAMVPL 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 202 WSGTNVAGVNLQTLNPeigtdcdKENWQETHKMVVNSAYEVIRL--KGYTNWAIGLSVADLIESLMKNLNRIHPVSTMVK 279
Cdd:TIGR01763 182 VRYSTVAGIPVADLIS-------AERIAEIVERTRKGGGEIVNLlkQGSAYYAPAASVVEMVEAILKDRKRVLPCAAYLD 254
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1174690866 280 GMYGIsEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDIQKDL 331
Cdd:TIGR01763 255 GQYGI-DGIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVDENCKML 305
Ldh_1_N pfam00056
lactate/malate dehydrogenase, NAD binding domain; L-lactate dehydrogenases are metabolic ...
34-161 1.59e-58

lactate/malate dehydrogenase, NAD binding domain; L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.


Pssm-ID: 395010 [Multi-domain]  Cd Length: 141  Bit Score: 185.12  E-value: 1.59e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  34 MACAVSILLKELADELALVDVVEDKLKGEMMDLQHGSLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQR 113
Cdd:pfam00056  14 QSLAFLLANKGLADELVLYDIVKEKLEGVAMDLSHGSTFLLVPGIVGGGDYEDLKDADVVVITAGVPRKPGMTRLDLLNV 93
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIG 161
Cdd:pfam00056  94 NAKIFKSIGPALAKYAPNAIVLVVSNPVDILTYVAWKASGFPPNRVFG 141
PTZ00082 PTZ00082
L-lactate dehydrogenase; Provisional
40-320 2.55e-53

L-lactate dehydrogenase; Provisional


Pssm-ID: 173376 [Multi-domain]  Cd Length: 321  Bit Score: 177.96  E-value: 2.55e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  40 ILLKELADeLALVDVVEDKLKGEMMDLQHG-SLFLKTPKIVASKDYSVTANSRIVVVTAGVRQQEGES-----RLNLVQR 113
Cdd:PTZ00082   25 IVLKNLGD-VVLFDIVKNIPQGKALDISHSnVIAGSNSKVIGTNNYEDIAGSDVVIVTAGLTKRPGKSdkewnRDDLLPL 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 114 NVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGE 193
Cdd:PTZ00082  104 NAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASVIGA 183
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 194 HGDTSVPVWSGTNVAGVNLQTL--NPEIGtdcdKENWQETHKMVVNSAYEVIRL--KGYTNWAIGLSVADLIESLMKNLN 269
Cdd:PTZ00082  184 HGDKMVPLPRYVTVGGIPLSEFikKGLIT----QEEIDEIVERTRNTGKEIVDLlgTGSAYFAPAAAAIEMAEAYLKDKK 259
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1174690866 270 RIHPVSTMVKGMYGISeEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQAS 320
Cdd:PTZ00082  260 RVLPCSAYLEGQYGHK-DIYMGTPAVIGANGVEKIIELDLTPEEQKKFDES 309
LDH-like_MDH_nadp cd05294
A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity; The ...
35-324 6.06e-52

A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity; The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133430 [Multi-domain]  Cd Length: 309  Bit Score: 173.74  E-value: 6.06e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  35 ACAVSILLKELADELALVDVVE--DKLKGEMMDLqHGSLFLK--TPKIVASKDYSVTANSRIVVVTAGVRQQEGESRLNL 110
Cdd:cd05294    15 ATALLLAKEDVVKEINLISRPKslEKLKGLRLDI-YDALAAAgiDAEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDL 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 111 VQRNVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWI 190
Cdd:cd05294    94 AKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRI 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 191 LGEHGDTSVPVWSGTNVAGVNLQTLnPEIgTDCDKEnwqETHKMVVNSAYEVIRLKGYTNWAIGLSVADLIESLMKNLNR 270
Cdd:cd05294   174 IGEHGDSMVPLISSTSIGGIPIKRF-PEY-KDFDVE---KIVETVKNAGQNIISLKGGSEYGPASAISNLVRTIANDERR 248
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1174690866 271 IHPVSTMVKGMYGISEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTL 324
Cdd:cd05294   249 ILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIV 302
PTZ00117 PTZ00117
malate dehydrogenase; Provisional
40-320 7.28e-50

malate dehydrogenase; Provisional


Pssm-ID: 173409 [Multi-domain]  Cd Length: 319  Bit Score: 168.75  E-value: 7.28e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  40 ILLKELADeLALVDVVEDKLKGEMMDLQHGSLFLKTP-KIVASKDYSVTANSRIVVVTAGVRQQEGESRLNLVQRNVNIF 118
Cdd:PTZ00117   24 ILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNiNILGTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIM 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 119 KHIVPQIVRYSPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSFNGWILGEHGDTS 198
Cdd:PTZ00117  103 KSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGHGDLM 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 199 VPVWSGTNVAGVNLQTLNpEIGTDCDKEnWQETHKMVVNSAYEVIRL--KGYTNWAIGLSVADLIESLMKNLNRIHPVST 276
Cdd:PTZ00117  183 VPLPRYCTVNGIPLSDFV-KKGAITEKE-INEIIKKTRNMGGEIVKLlkKGSAFFAPAAAIVAMIEAYLKDEKRVLVCSV 260
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1174690866 277 MVKGMYGISeEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQAS 320
Cdd:PTZ00117  261 YLNGQYNCK-NLFVGVPVVIGGKGIEKVIELELNAEEKELFDKS 303
Ldh_1_C pfam02866
lactate/malate dehydrogenase, alpha/beta C-terminal domain; L-lactate dehydrogenases are ...
164-330 2.26e-30

lactate/malate dehydrogenase, alpha/beta C-terminal domain; L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes.


Pssm-ID: 397136  Cd Length: 173  Bit Score: 113.23  E-value: 2.26e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 164 TNLDSARFRFLMADKLGIHASSFNGWILGEHGDTSVPVWSGTNVAGVNLQTLNPEIGTDCDKENWQETHKmVVNSAYEVI 243
Cdd:pfam02866   1 TTLDINRARTFLAEKAGVDPRVVNVPVIGGHSGTEFPDWSHANVTIIPLQSQVKENLKDSEWELEELTHR-VQNAGYEVI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 244 RLK-GYTNWAIGLSVADLIESLMKNLNRIHPVSTMVKGMYGISEEVYLSLPCVLNGGGVASVIN-MTLTDDEVAQLQASA 321
Cdd:pfam02866  80 KAKaGSATLSMAVAGARFIRAILRGEGGVLSVGVYEDGYYGVPDDIYFSFPVVLGKDGVEKVLEiGPLNDFEREKMEKSA 159

                  ....*....
gi 1174690866 322 NTLWDIQKD 330
Cdd:pfam02866 160 AELKKEIEK 168
MDH cd00704
Malate dehydrogenase; Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid ...
48-324 8.60e-15

Malate dehydrogenase; Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133420 [Multi-domain]  Cd Length: 323  Bit Score: 73.85  E-value: 8.60e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  48 ELALVDV--VEDKLKGEMMDLQHgSLFLKTPKIVASKD-YSVTANSRIVVVTAGVRQQEGESRLNLVQRNVNIFKHIVPQ 124
Cdd:cd00704    33 ILHLLDIppAMKALEGVVMELQD-CAFPLLKGVVITTDpEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEA 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 125 IVRY-SPDCTIIVVSNPVDVLTYVTWK-LSGLPKHRVIgSGTNLDSARFRFLMADKLGIHASSF-NGWILGEHGDTSVPV 201
Cdd:cd00704   112 LNKVaKPTVKVLVVGNPANTNALIALKnAPNLPPKNFT-ALTRLDHNRAKAQVARKLGVRVSDVkNVIIWGNHSNTQVPD 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 202 WSGTNVAGVNLQTLNPEIgtdcDKENW--QETHKMVVNSAYEVIRLKGYTNwaiGLSVADLIESLMKNLnrIHP------ 273
Cdd:cd00704   191 LSNAVVYGPGGTEWVLDL----LDEEWlnDEFVKTVQKRGAAIIKKRGASS---AASAAKAIADHVKDW--LFGtppgei 261
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1174690866 274 VSTMV---KGMYGISEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTL 324
Cdd:cd00704   262 VSMGVyspGNPYGIPPGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEEL 315
MDH_euk_cyt TIGR01758
malate dehydrogenase, NAD-dependent; This model represents the NAD-dependent cytosolic malate ...
49-331 2.33e-11

malate dehydrogenase, NAD-dependent; This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography


Pssm-ID: 130819 [Multi-domain]  Cd Length: 324  Bit Score: 63.71  E-value: 2.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  49 LALVDVVEDK--LKGEMMDLQHGSLFLkTPKIVASKDYSVT-ANSRIVVVTAGVRQQEGESRLNLVQRNVNIFKHIVPQI 125
Cdd:TIGR01758  33 LHLLDIPPAMkvLEGVVMELMDCAFPL-LDGVVPTHDPAVAfTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRAL 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 126 VRY-SPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSF-NGWILGEHGDTSVPVWS 203
Cdd:TIGR01758 112 DKLaKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVkNVIIWGNHSSTQYPDVN 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 204 GTNVAGVNLQTLNPEIGTDcDKENWQETHKMVVNSAYEVIRLKGYTNwaiGLSVADLIESLMKNLNRIHPVSTMVK---- 279
Cdd:TIGR01758 192 HATVTKGGKQKPVREAIKD-DAYLDGEFITTVQQRGAAIIRARKLSS---ALSAAKAAVDQMHDWVLGTPEGTFVSmgvy 267
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1174690866 280 ---GMYGISEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTLWDiQKDL 331
Cdd:TIGR01758 268 sdgSPYGVPKGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAKELEE-ERDE 321
PTZ00325 PTZ00325
malate dehydrogenase; Provisional
39-205 1.71e-09

malate dehydrogenase; Provisional


Pssm-ID: 240360 [Multi-domain]  Cd Length: 321  Bit Score: 58.14  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  39 SILLKELA--DELALVDVVedKLKGEMMDLQHGSLFLKTPKIVASKDYSVTA-NSRIVVVTAGVRQQEGESRLNLVQRNV 115
Cdd:PTZ00325   25 SLLLKQNPhvSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKALrGADLVLICAGVPRKPGMTRDDLFNTNA 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 116 NIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYV---TWKLSGL-PKHRVIGSgTNLDSARFRFLMADKLGIHASSFNGWIL 191
Cdd:PTZ00325  103 PIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIaaeTLKKAGVyDPRKLFGV-TTLDVVRARKFVAEALGMNPYDVNVPVV 181
                         170
                  ....*....|....*
gi 1174690866 192 GEHGD-TSVPVWSGT 205
Cdd:PTZ00325  182 GGHSGvTIVPLLSQT 196
MDH_glyoxysomal_mitochondrial cd01337
Glyoxysomal and mitochondrial malate dehydrogenases; MDH is one of the key enzymes in the ...
39-203 4.80e-09

Glyoxysomal and mitochondrial malate dehydrogenases; MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133422 [Multi-domain]  Cd Length: 310  Bit Score: 56.73  E-value: 4.80e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  39 SILLKE--LADELALVDVVEdkLKGEMMDLQHGSL------FLKTPKIVASKDysvtaNSRIVVVTAGVRQQEGESRLNL 110
Cdd:cd01337    17 SLLLKLnpLVSELALYDIVN--TPGVAADLSHINTpakvtgYLGPEELKKALK-----GADVVVIPAGVPRKPGMTRDDL 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 111 VQRNVNIFKHIVPQIVRYSPDCTIIVVSNPVDVLTYV---TWKLSGL--PKhRVIGSgTNLDSARFRFLMADKLGIHASS 185
Cdd:cd01337    90 FNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIaaeVLKKAGVydPK-RLFGV-TTLDVVRANTFVAELLGLDPAK 167
                         170
                  ....*....|....*....
gi 1174690866 186 FNGWILGEH-GDTSVPVWS 203
Cdd:cd01337   168 VNVPVIGGHsGVTILPLLS 186
MDH_chloroplast-like cd01338
Chloroplast-like malate dehydrogenases; MDH is one of the key enzymes in the citric acid cycle, ...
48-324 4.43e-08

Chloroplast-like malate dehydrogenases; MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the chloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133423 [Multi-domain]  Cd Length: 322  Bit Score: 53.75  E-value: 4.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  48 ELALVDV--VEDKLKGEMMDLQHGSLFLKTpKIVASKDYSVT---ANSRIVVvtaGVR-QQEGESRLNLVQRNVNIFkhi 121
Cdd:cd01338    35 ILQLLELpqALKALEGVAMELEDCAFPLLA-EIVITDDPNVAfkdADWALLV---GAKpRGPGMERADLLKANGKIF--- 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 122 VPQ---IVRY-SPDCTIIVVSNPVDVLTYVTWKLS-GLPKHRvIGSGTNLDSARFRFLMADKLGIHASSF-NGWILGEHG 195
Cdd:cd01338   108 TAQgkaLNDVaSRDVKVLVVGNPCNTNALIAMKNApDIPPDN-FTAMTRLDHNRAKSQLAKKAGVPVTDVkNMVIWGNHS 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 196 DTSVPVWSGTNVAGVNLqtlnPEIGTDcdkENWQETH--KMVVNSAYEVIRLKGYTNWA-IGLSVADLIESLM--KNLNR 270
Cdd:cd01338   187 PTQYPDFTNATIGGKPA----AEVIND---RAWLEDEfiPTVQKRGAAIIKARGASSAAsAANAAIDHMRDWVlgTPEGD 259
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1174690866 271 IHPVSTMVKGMYGISEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTL 324
Cdd:cd01338   260 WFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLAEL 313
MDH_cytoplasmic_cytosolic cd01336
Cytoplasmic and cytosolic Malate dehydrogenases; MDH is one of the key enzymes in the citric ...
48-324 1.40e-06

Cytoplasmic and cytosolic Malate dehydrogenases; MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133421 [Multi-domain]  Cd Length: 325  Bit Score: 49.16  E-value: 1.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  48 ELALVDV--VEDKLKGEMMDLQHGSLFLKTpKIVASKDYSVT-ANSRIVVVTAGVRQQEGESRLNLVQRNVNIFKHIVPQ 124
Cdd:cd01336    35 ILHLLDIppALKALEGVVMELQDCAFPLLK-SVVATTDPEEAfKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEA 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 125 IVRY-SPDCTIIVVSNPVDVLTYVTWKL-SGLPKhRVIGSGTNLDSARFRFLMADKLGIHASSF-NGWILGEHGDTSVPv 201
Cdd:cd01336   114 LDKYaKKNVKVLVVGNPANTNALILLKYaPSIPK-ENFTALTRLDHNRAKSQIALKLGVPVSDVkNVIIWGNHSSTQYP- 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 202 wsGTNVAGVNLQTLNPEIGTDCDKENWQETH--KMVVNSAYEVIRLKGYTNwaiGLSVADLIESLMKNLNRIHP----VS 275
Cdd:cd01336   192 --DVNHATVELNGKGKPAREAVKDDAWLNGEfiSTVQKRGAAVIKARKLSS---AMSAAKAICDHVHDWWFGTPegefVS 266
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1174690866 276 TMV--KGMYGISEEVYLSLPCVLNGGGVASVINMTLTDDEVAQLQASANTL 324
Cdd:cd01336   267 MGVysDGSYGVPEGLIFSFPVTCKNGKWKIVQGLSIDDFSREKIDATAKEL 317
PLN00135 PLN00135
malate dehydrogenase
49-200 9.66e-06

malate dehydrogenase


Pssm-ID: 177744 [Multi-domain]  Cd Length: 309  Bit Score: 46.69  E-value: 9.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  49 LALVDV--VEDKLKGEMMDLQHGSL-FLKtpKIVASKDY-SVTANSRIVVVTAGVRQQEGESRLNLVQRNVNIFKHIVPQ 124
Cdd:PLN00135   16 LHMLDIppAAEALNGVKMELIDAAFpLLK--GVVATTDVvEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASA 93
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1174690866 125 IVRY-SPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGIHASSF-NGWILGEHGDTSVP 200
Cdd:PLN00135   94 LEKHaAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVkNVIIWGNHSSTQYP 171
LDH_protist TIGR01756
lactate dehydrogenase; This model represents a family of protist lactate dehydrogenases which ...
92-331 3.35e-05

lactate dehydrogenase; This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.


Pssm-ID: 130817  Cd Length: 313  Bit Score: 44.87  E-value: 3.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  92 IVVVTAGVRQQEGESRLNLVQRNVNIFKHIVPQIVRYS-PDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSAR 170
Cdd:TIGR01756  63 CAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAkPTVKVLVIGNPVNTNCLVAMLHAPKLSAENFSSLCMLDHNR 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 171 FRFLMADKLGIHASS-FNGWILGEHGDTSVPvwSGTNVAGVNLQTLNPEIGTDCDKENWQETHKMVVNSAYEVIRLKGYT 249
Cdd:TIGR01756 143 AVSRIASKLKVPVDHiYHVVVWGNHAESMVA--DLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMRGFT 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 250 NWAIGLSVAdlIESLMKNLNRIHPVSTMVKGM-------YGISEEVYLSLPCVLNGGGVASVINMTLTDDEVAQlqasan 322
Cdd:TIGR01756 221 SAASPVKAS--LQHMKAWLFGTRPGEVLSMGIpvpegnpYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKT------ 292

                  ....*....
gi 1174690866 323 TLWDIQKDL 331
Cdd:TIGR01756 293 KLAQTEKDL 301
Malate-DH_plant TIGR01757
malate dehydrogenase, NADP-dependent; This model represents the NADP-dependent malate ...
40-324 6.37e-05

malate dehydrogenase, NADP-dependent; This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.


Pssm-ID: 130818 [Multi-domain]  Cd Length: 387  Bit Score: 44.19  E-value: 6.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  40 ILLKELADELAlvdvvEDKLKGEMMDLQHgSLFLKTPKIVASKD-YSVTANSRIVVVTAGVRQQEGESRLNLVQRNVNIF 118
Cdd:TIGR01757  76 IALKLLGSERS-----KEALEGVAMELED-SLYPLLREVSIGIDpYEVFEDADWALLIGAKPRGPGMERADLLDINGQIF 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 119 KHIVPQIVRY-SPDCTIIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRFLMADKLGI-HASSFNGWILGEHGD 196
Cdd:TIGR01757 150 ADQGKALNAVaSKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKfYTSVSNVTIWGNHST 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 197 TSVPVWSGTNVAGVNLqtlnPEIGTDCdkeNW--QETHKMVVNSAYEVIRLKGYTNWA-IGLSVADLIESLMKNLNRIHP 273
Cdd:TIGR01757 230 TQVPDFVNAKIGGRPA----KEVIKDT---KWleEEFTPTVQKRGGALIKKWGRSSAAsTAVSIADAIKSLVVPTPEGDW 302
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1174690866 274 VSTMV---KGMYGISEEVYLSLPCVLNGGGVASVINMTLTDDEV-AQLQASANTL 324
Cdd:TIGR01757 303 FSTGVytdGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLrERIRKSEDEL 357
PLN00106 PLN00106
malate dehydrogenase
39-205 1.13e-04

malate dehydrogenase


Pssm-ID: 215058 [Multi-domain]  Cd Length: 323  Bit Score: 43.40  E-value: 1.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866  39 SILLK--ELADELALVDVVedKLKGEMMDLQHgslfLKTPKIVasKDYSVTAN-------SRIVVVTAGVRQQEGESRLN 109
Cdd:PLN00106   35 SLLMKmnPLVSELHLYDIA--NTPGVAADVSH----INTPAQV--RGFLGDDQlgdalkgADLVIIPAGVPRKPGMTRDD 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174690866 110 LVQRNVNIFKHIVPQIVRYSPDCTIIVVSNPV--------DVLtyvtwKLSGL--PKhRVIGSgTNLDSARFRFLMADKL 179
Cdd:PLN00106  107 LFNINAGIVKTLCEAVAKHCPNALVNIISNPVnstvpiaaEVL-----KKAGVydPK-KLFGV-TTLDVVRANTFVAEKK 179
                         170       180
                  ....*....|....*....|....*..
gi 1174690866 180 GIHASSFNGWILGEH-GDTSVPVWSGT 205
Cdd:PLN00106  180 GLDPADVDVPVVGGHaGITILPLLSQA 206
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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