nucleoporin NUP42 [Bos taurus]
Protein Classification
zinc finger CCCH domain-containing protein( domain architecture ID 16062263)
zinc finger CCCH domain-containing protein similar to vertebrate nucleoporin NUP42, which is required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm, and Arabidopsis thaliana protein FRIGIDA-ESSENTIAL 1, a transcriptional activator involved in the FRIGIDA-mediated vernalization pathway
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
4-22 | 3.72e-06 | ||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. : Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 43.17 E-value: 3.72e-06
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| Name | Accession | Description | Interval | E-value | ||
| zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
4-22 | 3.72e-06 | ||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 43.17 E-value: 3.72e-06
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| ZnF_C3H1 | smart00356 | zinc finger; |
1-22 | 4.27e-05 | ||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 40.31 E-value: 4.27e-05
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| Name | Accession | Description | Interval | E-value | ||
| zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
4-22 | 3.72e-06 | ||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 43.17 E-value: 3.72e-06
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| ZnF_C3H1 | smart00356 | zinc finger; |
1-22 | 4.27e-05 | ||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 40.31 E-value: 4.27e-05
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| zf-CCCH_4 | pfam18044 | CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and ... |
2-22 | 2.86e-04 | ||
CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and one histidine to coordinate the zinc ion. This domain is found in a wide variety of proteins such as E3 ligases. Pssm-ID: 465626 Cd Length: 22 Bit Score: 37.95 E-value: 2.86e-04
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| Blast search parameters | ||||
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