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Conserved domains on  [gi|1191971857|gb|OTG61176|]
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penicillin-binding protein 1B [Acinetobacter sp. ANC 4204]

Protein Classification

penicillin-binding protein 1B( domain architecture ID 1005973)

penicillin-binding protein 1B is a bifunctional transpeptidases/transglycosylase that catalyzes synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PBP_1b super family cl37043
penicillin-binding protein 1B; Bacterial that synthesize a cell wall of peptidoglycan (murein) ...
17-731 0e+00

penicillin-binding protein 1B; Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


The actual alignment was detected with superfamily member TIGR02071:

Pssm-ID: 273952 [Multi-domain]  Cd Length: 730  Bit Score: 768.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  17 LVIAAFLVFsiYLIRLDSVVRDKFEGKRWDIPAKVFARPLEVYTNAPISQADFTQELKLLGYKSSENYTKSGNYVSSGNE 96
Cdd:TIGR02071   8 FTAAVLLAF--YGLYLDQQIRSRFDGKVWQLPAAVYARPLNLEPGMSLSKKELLIELDATQYRQVSHVTLPGEYSVQNNS 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  97 LYVHTRGFDFGDSVEPEQVLKVTFADEQVSEV-SATKPSSTGIARLEPMLIGGIYPQHNEDRVLIKLDKVPKPLIEALIA 175
Cdd:TIGR02071  86 IEVIRRPFDFPDGAEPQRRARLTFNGNQLSKIeNLDNNKEFGFFRLDPKLIAMLYSPNGEQRLFVPRDQFPELLVDTLLA 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 176 TEDRNFYSHHGISIRGTARAIVSNVTGGK-RQGGSTLTQQLVKNFYLTPEKTIKRKVNEAFMALLVELHYNKDEILEAYL 254
Cdd:TIGR02071 166 TEDRDFYEHDGISLYSIGRAVWVNLTAGRtVQGGSTLTQQLVKNLFLSNERSLWRKANEAYMALILDARYSKDRILELYL 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 255 NEVNLGQNGNYSINGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKKRRDIVLHNMLVMGYLTQEQY 334
Cdd:TIGR02071 246 NEVYLGQSGDDAIHGFPLASQYYFGRPLGELSLDQVALLVGMVKGPSYYNPWRNPDRALERRNLVLRLLQEQKIIDDEEY 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 335 ETETARPLNVIAKPTLGpSRFPDFLDIVRRQLRTEYQEGDLTNQGLRIFTTLDPIAQTKIQDSFKATVNRLSRgSNRLKE 414
Cdd:TIGR02071 326 DMLSARPLGVQKKGGII-SRQPAFLQLVRRELRQKLGDKVKDLSGLRIFTTLDPVSQSAAEQAVQETIPALKK-KKKLPD 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 415 LQGAVLVAHPENGELVAAVGSTQ-DFTGFNRALDAKRQVGSLLKPVIYLSAI-QSGRYNWASPVEDSSISI-QSNGQSWT 491
Cdd:TIGR02071 404 LEAAMVVTDRFTGEVRAMVGGSDpQFAGFNRALQARRQIGSLVKPAVYLTALsQPDKYRLNTWIEDQPLSIkLSNGQVWS 483
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 492 PKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGVT-SNIPSYPSIFLGAVDMSPMEVLGIYGNFATG 570
Cdd:TIGR02071 484 PQNYDRRYSGTVMLYDALAHSLNIPTVNLGMKVGLPKVSQTWNKLGINkDEIPPVPSMLLGAINLTPYEVAQLYQTIASG 563
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 571 GFKYPTKAIRTVVDQNGRLLTRYGLNVQQTIDPSSAYVLNYGLQQVMTSGTGRSAYNTLPtSLKLAGKSGTTNDTRDSWF 650
Cdd:TIGR02071 564 GNRAPLSAVRSVLDEDGKVLYQSDPQAEQAVPSQAAYLTLYAMQQVVQRGTARSLGADFP-SLSLAGKTGTTNDNRDSWF 642
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 651 AGYSGNYVSVVWLGLDDNKQTGLTGSSGALPVWTNVMSQLRQKPVNLRQPDDVQWHWIDSGSGYLAAQGCEGAMYIPLLR 730
Cdd:TIGR02071 643 AGIDGKEVTIIWLGRDDNGPTKLTGASGALQVYARYLSYQTPEPLLLVPPEGIDWFGVDPQGNGGCKANCPGARRLPIWT 722

                  .
gi 1191971857 731 N 731
Cdd:TIGR02071 723 G 723
 
Name Accession Description Interval E-value
PBP_1b TIGR02071
penicillin-binding protein 1B; Bacterial that synthesize a cell wall of peptidoglycan (murein) ...
17-731 0e+00

penicillin-binding protein 1B; Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273952 [Multi-domain]  Cd Length: 730  Bit Score: 768.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  17 LVIAAFLVFsiYLIRLDSVVRDKFEGKRWDIPAKVFARPLEVYTNAPISQADFTQELKLLGYKSSENYTKSGNYVSSGNE 96
Cdd:TIGR02071   8 FTAAVLLAF--YGLYLDQQIRSRFDGKVWQLPAAVYARPLNLEPGMSLSKKELLIELDATQYRQVSHVTLPGEYSVQNNS 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  97 LYVHTRGFDFGDSVEPEQVLKVTFADEQVSEV-SATKPSSTGIARLEPMLIGGIYPQHNEDRVLIKLDKVPKPLIEALIA 175
Cdd:TIGR02071  86 IEVIRRPFDFPDGAEPQRRARLTFNGNQLSKIeNLDNNKEFGFFRLDPKLIAMLYSPNGEQRLFVPRDQFPELLVDTLLA 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 176 TEDRNFYSHHGISIRGTARAIVSNVTGGK-RQGGSTLTQQLVKNFYLTPEKTIKRKVNEAFMALLVELHYNKDEILEAYL 254
Cdd:TIGR02071 166 TEDRDFYEHDGISLYSIGRAVWVNLTAGRtVQGGSTLTQQLVKNLFLSNERSLWRKANEAYMALILDARYSKDRILELYL 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 255 NEVNLGQNGNYSINGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKKRRDIVLHNMLVMGYLTQEQY 334
Cdd:TIGR02071 246 NEVYLGQSGDDAIHGFPLASQYYFGRPLGELSLDQVALLVGMVKGPSYYNPWRNPDRALERRNLVLRLLQEQKIIDDEEY 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 335 ETETARPLNVIAKPTLGpSRFPDFLDIVRRQLRTEYQEGDLTNQGLRIFTTLDPIAQTKIQDSFKATVNRLSRgSNRLKE 414
Cdd:TIGR02071 326 DMLSARPLGVQKKGGII-SRQPAFLQLVRRELRQKLGDKVKDLSGLRIFTTLDPVSQSAAEQAVQETIPALKK-KKKLPD 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 415 LQGAVLVAHPENGELVAAVGSTQ-DFTGFNRALDAKRQVGSLLKPVIYLSAI-QSGRYNWASPVEDSSISI-QSNGQSWT 491
Cdd:TIGR02071 404 LEAAMVVTDRFTGEVRAMVGGSDpQFAGFNRALQARRQIGSLVKPAVYLTALsQPDKYRLNTWIEDQPLSIkLSNGQVWS 483
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 492 PKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGVT-SNIPSYPSIFLGAVDMSPMEVLGIYGNFATG 570
Cdd:TIGR02071 484 PQNYDRRYSGTVMLYDALAHSLNIPTVNLGMKVGLPKVSQTWNKLGINkDEIPPVPSMLLGAINLTPYEVAQLYQTIASG 563
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 571 GFKYPTKAIRTVVDQNGRLLTRYGLNVQQTIDPSSAYVLNYGLQQVMTSGTGRSAYNTLPtSLKLAGKSGTTNDTRDSWF 650
Cdd:TIGR02071 564 GNRAPLSAVRSVLDEDGKVLYQSDPQAEQAVPSQAAYLTLYAMQQVVQRGTARSLGADFP-SLSLAGKTGTTNDNRDSWF 642
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 651 AGYSGNYVSVVWLGLDDNKQTGLTGSSGALPVWTNVMSQLRQKPVNLRQPDDVQWHWIDSGSGYLAAQGCEGAMYIPLLR 730
Cdd:TIGR02071 643 AGIDGKEVTIIWLGRDDNGPTKLTGASGALQVYARYLSYQTPEPLLLVPPEGIDWFGVDPQGNGGCKANCPGARRLPIWT 722

                  .
gi 1191971857 731 N 731
Cdd:TIGR02071 723 G 723
mrcB PRK09506
bifunctional glycosyl transferase/transpeptidase; Reviewed
12-774 0e+00

bifunctional glycosyl transferase/transpeptidase; Reviewed


Pssm-ID: 236544 [Multi-domain]  Cd Length: 830  Bit Score: 563.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  12 LIFCILVIAAfLVFSIYLIRLDSVVRDKFEGKRWDIPAKVFARPLEVYTNAPISQADFTQELKLLGYKSSENYTKSGNYV 91
Cdd:PRK09506   66 LLLKLFIVFA-VLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPGMSYSKNEMVKLLEATQYRQVSKMTRPGEFT 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  92 SSGNELYVHTRGFDFGDSVEPEQVLKVTFADEQVSEV-SATKPSSTGIARLEPMLIGGIYPQHNEDRVLIKLDKVPKPLI 170
Cdd:PRK09506  145 VQANSIEMIRRPFDFPDSKEGQVRARLTFDGDRLATIvNLDNNRQFGFFRLDPRLITMLQSPNGEQRLFVPRSGFPDLLV 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 171 EALIATEDRNFYSHHGISIRGTARAIVSNVTGGKR-QGGSTLTQQLVKNFYLTPEKTIKRKVNEAFMALLVELHYNKDEI 249
Cdd:PRK09506  225 DTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTvQGGSTLTQQLVKNLFLSNERSLWRKANEAYMALIMDARYSKDRI 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 250 LEAYLNEVNLGQNGNYSINGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKKRRDIVLHNMLVMGYL 329
Cdd:PRK09506  305 LELYLNEVYLGQSGDDQIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASLYNPWRNPKLALERRNLVLRLLQQQQII 384
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 330 TQEQYETETARPLNViaKPTLGP-SRFPDFLDIVRRQLRTEYqeGDLTN--QGLRIFTTLDPIAQTKIQDSFKATVNRLs 406
Cdd:PRK09506  385 DQELYDMLSARPLGV--QPKGGViSPQPAFMQMVRQELQAKL--GDKVKdlSGVKIFTTLDPVSQDAAEKAVEEGIPAL- 459
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 407 RGSNRLKELQGAVLVAHPENGELVAAVGSTQ-DFTGFNRALDAKRQVGSLLKPVIYLSAI-QSGRYNWASPVEDSSISI- 483
Cdd:PRK09506  460 KKQRKLSDLETAMVVVDRFSGEVRAMVGGSEpQFAGYNRAMQARRSIGSLAKPATYLTALsQPDKYRLNTWIADAPISLr 539
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 484 QSNGQSWTPKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGVTSN-IPSYPSIFLGAVDMSPMEVLG 562
Cdd:PRK09506  540 QPNGQVWSPQNDDRRFSGRVMLVDALTRSMNVPTVNLGMALGLPAVTDTWIKLGVPKDqLNPVPAMLLGALNLTPIEVAQ 619
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 563 IYGNFATGGFKYPTKAIRTVVDQNGRLLTRYGLNVQQTIDPSSAYVLNYGLQQVMTSGTGRSAYNTLPTsLKLAGKSGTT 642
Cdd:PRK09506  620 AFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLYTMQQVVQRGTGRQLGAKYPN-LHLAGKTGTT 698
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 643 NDTRDSWFAGYSGNYVSVVWLGLDDNKQTGLTGSSGALPVWTNVMSQLRQKPVNLRQPDDVQWHWIDSGSGYLAAQGceG 722
Cdd:PRK09506  699 NDLVDSWFAGIDGKEVTITWVGRDNNQPTKLYGASGAMTIYQRYLENQTPTPLNLTPPEDIVDMGVDYDGNFVCGSG--G 776
                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1191971857 723 AMYIPLLRNTiPRkaTACGLPHYQVEPTYNPETDGNQATPEQ-GDSIDNYIRE 774
Cdd:PRK09506  777 MRVLPVWTDD-PQ--SLCQQSEMQQQPSQPQQQPQQQPAEQKdSDGVAGWIKD 826
MrcB COG0744
Membrane carboxypeptidase (penicillin-binding protein) [Cell wall/membrane/envelope biogenesis] ...
115-700 0e+00

Membrane carboxypeptidase (penicillin-binding protein) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223815 [Multi-domain]  Cd Length: 661  Bit Score: 556.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 115 VLKVTFADEQVSEVSATKPSSTGIARLEPMLIGGIYPQHnEDRVLIKLDKVPKPLIEALIATEDRNFYSHHGISIRGTAR 194
Cdd:COG0744    35 LALYVKLPILLDLLVPQTPKSTTIYDRDGKLILTLYSGE-EHREWVPLDQIPPNLKQALIAIEDRRFYEHHGIDPKGIGR 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 195 AIVSNVT--GGKRQGGSTLTQQLVKNFYLTPEKTIKRKVNEAFMALLVELHYNKDEILEAYLNEVNLGqNGNYsinGYGL 272
Cdd:COG0744   114 AALANNLsgGGVSQGGSTITQQLAKNLFLSNERTLDRKAKEAVLALWLEALYSKDEILEMYLNQVYFG-RGAY---GVEA 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 273 ASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKKRRDIVLHNMLVMGYLTQEQYETETARPLNVIAKPTLGP 352
Cdd:COG0744   190 AAQYYFGKPAKDLTLAQAALLAGLLKAPSLYNPYRPPEYARARRNLVLRRMVEQGYITAEEYDAALAEPLQVQQAKTVAT 269
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 353 SRFPDFLDIVRRQLRTEYQEGDLTNQGLRIFTTLDPIAQTKIQDSFKATVNRlsrgsnRLKELQGAVLVAHPENGELVAA 432
Cdd:COG0744   270 SPPPYFDDVVRQELAELLGESDLLTGGLKVYTTLDPELQEAAEKAVQADPLY------KLRDVQAALVLIDPKTGAVRAL 343
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 433 VGSTQD-FTGFNRALDAKRQVGSLLKPVIYLSAIQSGRYNWASPVEDSSISIqsngQSWTPKNYSGGEHGV-VPMVQALS 510
Cdd:COG0744   344 VGGRDYqPSGFNRATQAKRQPGSTFKPFLYYAALEEGKATPSTIVVDAPVTY----GNWSPKNYDGRYEGGsVTLREALA 419
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 511 HSYNLSSVRLGQEFGLSTFSNHLKRFGVTSNIPSYPSIFLGAVDMSPMEVLGIYGNFATGGFKYPTKAIRTVVDQNGRLL 590
Cdd:COG0744   420 TSLNIPAVRLLQKVGLDKVVDTAKKLGINSPLVPGPSLALGASEVSPLEMASAYATFANGGTYYPPHFIRKVTDADGVLY 499
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 591 tRYGLNVQQTIDPSSAYVLNYGLQQVMTS-GTGRSAYNTLPTslkLAGKSGTTNDTRDSWFAGYSGNYVSVVWLGLDDNK 669
Cdd:COG0744   500 -DNPPKVKRVLSPQAAYLMTDMLQGVVTPtGTGAAAKLPGPY---AAGKTGTTNDNRDAWFVGYTPQLTTAVWLGNDDNP 575
                         570       580       590
                  ....*....|....*....|....*....|.
gi 1191971857 670 QTGLTGSSGALPVWTNVMSQLRQKPVNLRQP 700
Cdd:COG0744   576 LTPLTGGSDAAAIWKEFMGQALPGGLRVPFP 606
Transgly pfam00912
Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of ...
149-323 6.37e-81

Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.


Pssm-ID: 425943 [Multi-domain]  Cd Length: 177  Bit Score: 256.68  E-value: 6.37e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 149 IYPQHNEDRVLIKLDKVPKPLIEALIATEDRNFYSHHGISIRGTARAIVSNVTGGKR-QGGSTLTQQLVKNFYLTPEKTI 227
Cdd:pfam00912   5 LAELGEENRTWVPLDDIPPALKNAVLAIEDRRFYEHGGVDPKGIARALLKNLRSGRIvQGGSTITQQLAKNLFLTPERTL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 228 KRKVNEAFMALLVELHYNKDEILEAYLNEVNLGQNgnysINGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWR 307
Cdd:pfam00912  85 TRKLKEAVLALKLERRYSKDEILEAYLNTVYFGGG----AYGIEAAARAYFGKDASDLTLAEAALLAGLPQAPSRYNPLR 160
                         170
                  ....*....|....*.
gi 1191971857 308 NPEAAKKRRDIVLHNM 323
Cdd:pfam00912 161 NPERAKRRRNLVLDRM 176
 
Name Accession Description Interval E-value
PBP_1b TIGR02071
penicillin-binding protein 1B; Bacterial that synthesize a cell wall of peptidoglycan (murein) ...
17-731 0e+00

penicillin-binding protein 1B; Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273952 [Multi-domain]  Cd Length: 730  Bit Score: 768.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  17 LVIAAFLVFsiYLIRLDSVVRDKFEGKRWDIPAKVFARPLEVYTNAPISQADFTQELKLLGYKSSENYTKSGNYVSSGNE 96
Cdd:TIGR02071   8 FTAAVLLAF--YGLYLDQQIRSRFDGKVWQLPAAVYARPLNLEPGMSLSKKELLIELDATQYRQVSHVTLPGEYSVQNNS 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  97 LYVHTRGFDFGDSVEPEQVLKVTFADEQVSEV-SATKPSSTGIARLEPMLIGGIYPQHNEDRVLIKLDKVPKPLIEALIA 175
Cdd:TIGR02071  86 IEVIRRPFDFPDGAEPQRRARLTFNGNQLSKIeNLDNNKEFGFFRLDPKLIAMLYSPNGEQRLFVPRDQFPELLVDTLLA 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 176 TEDRNFYSHHGISIRGTARAIVSNVTGGK-RQGGSTLTQQLVKNFYLTPEKTIKRKVNEAFMALLVELHYNKDEILEAYL 254
Cdd:TIGR02071 166 TEDRDFYEHDGISLYSIGRAVWVNLTAGRtVQGGSTLTQQLVKNLFLSNERSLWRKANEAYMALILDARYSKDRILELYL 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 255 NEVNLGQNGNYSINGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKKRRDIVLHNMLVMGYLTQEQY 334
Cdd:TIGR02071 246 NEVYLGQSGDDAIHGFPLASQYYFGRPLGELSLDQVALLVGMVKGPSYYNPWRNPDRALERRNLVLRLLQEQKIIDDEEY 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 335 ETETARPLNVIAKPTLGpSRFPDFLDIVRRQLRTEYQEGDLTNQGLRIFTTLDPIAQTKIQDSFKATVNRLSRgSNRLKE 414
Cdd:TIGR02071 326 DMLSARPLGVQKKGGII-SRQPAFLQLVRRELRQKLGDKVKDLSGLRIFTTLDPVSQSAAEQAVQETIPALKK-KKKLPD 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 415 LQGAVLVAHPENGELVAAVGSTQ-DFTGFNRALDAKRQVGSLLKPVIYLSAI-QSGRYNWASPVEDSSISI-QSNGQSWT 491
Cdd:TIGR02071 404 LEAAMVVTDRFTGEVRAMVGGSDpQFAGFNRALQARRQIGSLVKPAVYLTALsQPDKYRLNTWIEDQPLSIkLSNGQVWS 483
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 492 PKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGVT-SNIPSYPSIFLGAVDMSPMEVLGIYGNFATG 570
Cdd:TIGR02071 484 PQNYDRRYSGTVMLYDALAHSLNIPTVNLGMKVGLPKVSQTWNKLGINkDEIPPVPSMLLGAINLTPYEVAQLYQTIASG 563
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 571 GFKYPTKAIRTVVDQNGRLLTRYGLNVQQTIDPSSAYVLNYGLQQVMTSGTGRSAYNTLPtSLKLAGKSGTTNDTRDSWF 650
Cdd:TIGR02071 564 GNRAPLSAVRSVLDEDGKVLYQSDPQAEQAVPSQAAYLTLYAMQQVVQRGTARSLGADFP-SLSLAGKTGTTNDNRDSWF 642
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 651 AGYSGNYVSVVWLGLDDNKQTGLTGSSGALPVWTNVMSQLRQKPVNLRQPDDVQWHWIDSGSGYLAAQGCEGAMYIPLLR 730
Cdd:TIGR02071 643 AGIDGKEVTIIWLGRDDNGPTKLTGASGALQVYARYLSYQTPEPLLLVPPEGIDWFGVDPQGNGGCKANCPGARRLPIWT 722

                  .
gi 1191971857 731 N 731
Cdd:TIGR02071 723 G 723
mrcB PRK09506
bifunctional glycosyl transferase/transpeptidase; Reviewed
12-774 0e+00

bifunctional glycosyl transferase/transpeptidase; Reviewed


Pssm-ID: 236544 [Multi-domain]  Cd Length: 830  Bit Score: 563.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  12 LIFCILVIAAfLVFSIYLIRLDSVVRDKFEGKRWDIPAKVFARPLEVYTNAPISQADFTQELKLLGYKSSENYTKSGNYV 91
Cdd:PRK09506   66 LLLKLFIVFA-VLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPGMSYSKNEMVKLLEATQYRQVSKMTRPGEFT 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  92 SSGNELYVHTRGFDFGDSVEPEQVLKVTFADEQVSEV-SATKPSSTGIARLEPMLIGGIYPQHNEDRVLIKLDKVPKPLI 170
Cdd:PRK09506  145 VQANSIEMIRRPFDFPDSKEGQVRARLTFDGDRLATIvNLDNNRQFGFFRLDPRLITMLQSPNGEQRLFVPRSGFPDLLV 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 171 EALIATEDRNFYSHHGISIRGTARAIVSNVTGGKR-QGGSTLTQQLVKNFYLTPEKTIKRKVNEAFMALLVELHYNKDEI 249
Cdd:PRK09506  225 DTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTvQGGSTLTQQLVKNLFLSNERSLWRKANEAYMALIMDARYSKDRI 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 250 LEAYLNEVNLGQNGNYSINGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKKRRDIVLHNMLVMGYL 329
Cdd:PRK09506  305 LELYLNEVYLGQSGDDQIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASLYNPWRNPKLALERRNLVLRLLQQQQII 384
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 330 TQEQYETETARPLNViaKPTLGP-SRFPDFLDIVRRQLRTEYqeGDLTN--QGLRIFTTLDPIAQTKIQDSFKATVNRLs 406
Cdd:PRK09506  385 DQELYDMLSARPLGV--QPKGGViSPQPAFMQMVRQELQAKL--GDKVKdlSGVKIFTTLDPVSQDAAEKAVEEGIPAL- 459
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 407 RGSNRLKELQGAVLVAHPENGELVAAVGSTQ-DFTGFNRALDAKRQVGSLLKPVIYLSAI-QSGRYNWASPVEDSSISI- 483
Cdd:PRK09506  460 KKQRKLSDLETAMVVVDRFSGEVRAMVGGSEpQFAGYNRAMQARRSIGSLAKPATYLTALsQPDKYRLNTWIADAPISLr 539
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 484 QSNGQSWTPKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGVTSN-IPSYPSIFLGAVDMSPMEVLG 562
Cdd:PRK09506  540 QPNGQVWSPQNDDRRFSGRVMLVDALTRSMNVPTVNLGMALGLPAVTDTWIKLGVPKDqLNPVPAMLLGALNLTPIEVAQ 619
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 563 IYGNFATGGFKYPTKAIRTVVDQNGRLLTRYGLNVQQTIDPSSAYVLNYGLQQVMTSGTGRSAYNTLPTsLKLAGKSGTT 642
Cdd:PRK09506  620 AFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLYTMQQVVQRGTGRQLGAKYPN-LHLAGKTGTT 698
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 643 NDTRDSWFAGYSGNYVSVVWLGLDDNKQTGLTGSSGALPVWTNVMSQLRQKPVNLRQPDDVQWHWIDSGSGYLAAQGceG 722
Cdd:PRK09506  699 NDLVDSWFAGIDGKEVTITWVGRDNNQPTKLYGASGAMTIYQRYLENQTPTPLNLTPPEDIVDMGVDYDGNFVCGSG--G 776
                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1191971857 723 AMYIPLLRNTiPRkaTACGLPHYQVEPTYNPETDGNQATPEQ-GDSIDNYIRE 774
Cdd:PRK09506  777 MRVLPVWTDD-PQ--SLCQQSEMQQQPSQPQQQPQQQPAEQKdSDGVAGWIKD 826
MrcB COG0744
Membrane carboxypeptidase (penicillin-binding protein) [Cell wall/membrane/envelope biogenesis] ...
115-700 0e+00

Membrane carboxypeptidase (penicillin-binding protein) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223815 [Multi-domain]  Cd Length: 661  Bit Score: 556.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 115 VLKVTFADEQVSEVSATKPSSTGIARLEPMLIGGIYPQHnEDRVLIKLDKVPKPLIEALIATEDRNFYSHHGISIRGTAR 194
Cdd:COG0744    35 LALYVKLPILLDLLVPQTPKSTTIYDRDGKLILTLYSGE-EHREWVPLDQIPPNLKQALIAIEDRRFYEHHGIDPKGIGR 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 195 AIVSNVT--GGKRQGGSTLTQQLVKNFYLTPEKTIKRKVNEAFMALLVELHYNKDEILEAYLNEVNLGqNGNYsinGYGL 272
Cdd:COG0744   114 AALANNLsgGGVSQGGSTITQQLAKNLFLSNERTLDRKAKEAVLALWLEALYSKDEILEMYLNQVYFG-RGAY---GVEA 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 273 ASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKKRRDIVLHNMLVMGYLTQEQYETETARPLNVIAKPTLGP 352
Cdd:COG0744   190 AAQYYFGKPAKDLTLAQAALLAGLLKAPSLYNPYRPPEYARARRNLVLRRMVEQGYITAEEYDAALAEPLQVQQAKTVAT 269
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 353 SRFPDFLDIVRRQLRTEYQEGDLTNQGLRIFTTLDPIAQTKIQDSFKATVNRlsrgsnRLKELQGAVLVAHPENGELVAA 432
Cdd:COG0744   270 SPPPYFDDVVRQELAELLGESDLLTGGLKVYTTLDPELQEAAEKAVQADPLY------KLRDVQAALVLIDPKTGAVRAL 343
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 433 VGSTQD-FTGFNRALDAKRQVGSLLKPVIYLSAIQSGRYNWASPVEDSSISIqsngQSWTPKNYSGGEHGV-VPMVQALS 510
Cdd:COG0744   344 VGGRDYqPSGFNRATQAKRQPGSTFKPFLYYAALEEGKATPSTIVVDAPVTY----GNWSPKNYDGRYEGGsVTLREALA 419
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 511 HSYNLSSVRLGQEFGLSTFSNHLKRFGVTSNIPSYPSIFLGAVDMSPMEVLGIYGNFATGGFKYPTKAIRTVVDQNGRLL 590
Cdd:COG0744   420 TSLNIPAVRLLQKVGLDKVVDTAKKLGINSPLVPGPSLALGASEVSPLEMASAYATFANGGTYYPPHFIRKVTDADGVLY 499
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 591 tRYGLNVQQTIDPSSAYVLNYGLQQVMTS-GTGRSAYNTLPTslkLAGKSGTTNDTRDSWFAGYSGNYVSVVWLGLDDNK 669
Cdd:COG0744   500 -DNPPKVKRVLSPQAAYLMTDMLQGVVTPtGTGAAAKLPGPY---AAGKTGTTNDNRDAWFVGYTPQLTTAVWLGNDDNP 575
                         570       580       590
                  ....*....|....*....|....*....|.
gi 1191971857 670 QTGLTGSSGALPVWTNVMSQLRQKPVNLRQP 700
Cdd:COG0744   576 LTPLTGGSDAAAIWKEFMGQALPGGLRVPFP 606
PBP_1a_fam TIGR02074
penicillin-binding protein, 1A family; Bacterial that synthesize a cell wall of peptidoglycan ...
156-693 0e+00

penicillin-binding protein, 1A family; Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273955 [Multi-domain]  Cd Length: 531  Bit Score: 546.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 156 DRVLIKLDKVPKPLIEALIATEDRNFYSHHGISIRGTARAIVSNVT-GGKRQGGSTLTQQLVKNFYLTPEKTIKRKVNEA 234
Cdd:TIGR02074   1 RREYVPIDDIPENLINAFLAIEDRRFYDHFGIDLKGIGRAAVANITsGRVLEGGSTITQQLAKNLYLTNERTITRKIQEA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 235 FMALLVELHYNKDEILEAYLNEVNLGqNGNYSINGyglASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKK 314
Cdd:TIGR02074  81 LLALKLEQKLSKDEILELYLNRIYFG-NGAYGIEA---AAQFYFGKSVNDLTLAEAAMLAGLPKAPSAYNPFKNPERAKD 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 315 RRDIVLHNMLVMGYLTQEQYETETARPLNVIAK-PTLGPSRFPDFLDIVRRQLRTEYQEgDLTNQGLRIFTTLDPIAQTK 393
Cdd:TIGR02074 157 RRNLVLSNMVENGYITAEEAEEAINEPIQLYLQtKKSEQYKAPYFVDYVIQELEEEYGE-ELYTGGLKIYTTLDLDAQKA 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 394 IQDSFKATVNRLSRGSNrlKELQGAVLVAHPENGELVAAVGStQDFT--GFNRALDAKRQVGSLLKPVIYLSAIQSGrYN 471
Cdd:TIGR02074 236 AEKVLNTGLRVAGRRDG--DDLQAALVAIDPDTGAVRALVGG-RDYGksQFNRATQAKRQPGSTFKPFVYAAALEKG-LT 311
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 472 WASPVEDSSISIQSNGqSWTPKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGVTSNIPSYPSIFLG 551
Cdd:TIGR02074 312 PATIVNDEPITYNGNG-PWSPKNYGGGYRGNVTLRQALAQSRNIPAVRLLQEVGLDKVVALAKRFGITSPLDPVLSLALG 390
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 552 AVDMSPMEVLGIYGNFATGGFKYPTKAIRTVVDQNGRLLTRYGLNVQQTIDPSSAYVLNYGLQQVMTSGTGRSAYntlPT 631
Cdd:TIGR02074 391 TVEVSPLEMASAYAVFANGGKYVEPHGIRKIVDRDGKVIYENKPKTTQVISPATAYIMTDMLKGVVESGTGRSAR---LP 467
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191971857 632 SLKLAGKSGTTNDTRDSWFAGYSGNYVSVVWLGLDDNKQTGLTGSSG--ALPVWTNVMSQLRQK 693
Cdd:TIGR02074 468 GRPVAGKTGTTQNWRDAWFVGYTPYYVTAVWVGYDDKKTLGKSGTGGglAAPIWRDFMAEALKN 531
PRK14850 PRK14850
penicillin-binding protein 1b; Provisional
23-709 2.09e-172

penicillin-binding protein 1b; Provisional


Pssm-ID: 237835 [Multi-domain]  Cd Length: 764  Bit Score: 515.55  E-value: 2.09e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  23 LVFSIYLIRLDSVVRDKFEGKRWDIPAKVFARPLEVYTNAPISQADFTQELKLLGYKSSENYTKSGNYVSSGNELYVHTR 102
Cdd:PRK14850   22 LLILCYGVYLYVKINRFINGKVWNFPTSIYSRIVNLEPGNSYSQKDVIHLLKSTMYRKVDLVTLPGEFSVKNNTIELIRR 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 103 GFDFGDSVEPEQVLKVTF-ADEQVSEVSATKPSSTGIARLEPMLIGGIYPQHNEDRVLIKLDKVPKPLIEALIATEDRNF 181
Cdd:PRK14850  102 SFDFPDIREDEIHARLYFnKDKLVRIKNIDNNHDFSFLRLDPKLIAMLYSPEGKKRLFIPRNQYPEMLIKTLLAIEDKYF 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 182 YSHHGISIRGTARAIVSNVTGGKR-QGGSTLTQQLVKNFYLTPEKTIKRKVNEAFMALLVELHYNKDEILEAYLNEVNLG 260
Cdd:PRK14850  182 YEHDGIHLSSIGRAFLVNLMSGHTiQGGSTLTQQLVKNLFLTNTRSLWRKINEIYMALILDRFYSKDRILELYLNEVYLG 261
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 261 QNGNYSINGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKKRRDIVLHNMLVMGYLTQEQYETETAR 340
Cdd:PRK14850  262 QDGNEQIRGFPLASIYYFGRPINELNLDQYALLVGMVKGASLYNPWTNPNLTLKRRNLVLFLLYKQKVITRKLYKDLCSR 341
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 341 PLNVIAKPTLGPSRfPDFLDIVRRQL--RTEYQEGDLTnqGLRIFTTLDPIAQTKIQDSFKATVNRLSRgSNRLKELQGA 418
Cdd:PRK14850  342 PLNVQSKGNIISSH-PAFIQLVCEEFhkKIHYPFKNFS--GTKIFTTLDYISQNAAEQAVKIGIPILKR-KKRLKDLEVA 417
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 419 VLVAHPENGELVAAVGSTQ-DFTGFNRALDAKRQVGSLLKPVIYLSAI-QSGRYNWASPVEDSSISIQ-SNGQSWTPKNY 495
Cdd:PRK14850  418 MVIIDRFSGEVRALIGSSKpEFNGYNRALKARRSIGSLSKPITYLTALsQPEKYHLNTWISDTPISIKlDNGQYWTPKNN 497
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 496 SGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGVTSN-IPSYPSIFLGAVDMSPMEVLGIYGNFATGGFKY 574
Cdd:PRK14850  498 NFSFSGKVMLIDALIHSINIPTVHLSINLGLKKLVDSWILLGISSNyITPLPSISLGAINLTPMEVAQVFQIIGSGGYKS 577
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 575 PTKAIRTVVDQNGRLLTRYGLNVQQTIDPSSAYVLNYGLQQVMTSGTGRSaYNTLPTSLKLAGKSGTTNDTRDSWFAGYS 654
Cdd:PRK14850  578 SLSSIRSIISDDNKVLYQNFPQSKHVESSQASYLTLYAMQQVVKSGTAKS-LGTIFKEFSLAGKTGTTNNLVDSWFVGID 656
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1191971857 655 GNYVSVVWLGLDDNKQTGLTGSSGALPVWTNVMSQLRQKPVNLRQPDDVQWHWID 709
Cdd:PRK14850  657 GKQVVITWIGRDNNHTTKLYGSSGAMKIYKRYLQYQNPVPLVLKAPNNINMFYIN 711
MrcA COG5009
Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis];
155-771 1.08e-154

Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 227342 [Multi-domain]  Cd Length: 797  Bit Score: 471.03  E-value: 1.08e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 155 EDRVLIKLDKVPKPLIEALIATEDRNFYSHHGISIRGTARAIVSNVTGGKR-QGGSTLTQQLVKNFYLTPEKTIKRKVNE 233
Cdd:COG5009    65 ERRIPVPIDDIPDRLINAFLAAEDKRFYEHHGVDPIGIFRAAFVNLTNGGRsQGASTITQQVAKNFFLSSERTLERKIKE 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 234 AFMALLVELHYNKDEILEAYLNEVNLGqNGNYsinGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAK 313
Cdd:COG5009   145 ALLAIRIEQSLSKDEILELYLNKIYLG-YRAY---GVAAAAQTYFGKSVNELTLAEAAMLAGLPKAPSNYNPLYNPERAK 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 314 KRRDIVLHNMLVMGYLTQEQYETETARPLNViaKPTLGPSRF--PDFLDIVRRQLRTEYQEGDLTNQGLRIFTTLDPIAQ 391
Cdd:COG5009   221 ERRNYVLNRMLEEGYITQEQADEAKAEPLVA--KYHGPEIAFsaPYFAEMVRQEMIRRYGEEAAYTGGYSVYTTLDLKLQ 298
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 392 ------------------------TKI----------------------------------------QDSFKAT------ 401
Cdd:COG5009   299 kaaqkalrnglldydrrhgyrgpeAHIelsgedwwdelaisdtlsdvgellpavvlsvaksgakiglADGSKVTlsmeam 378
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 402 ------------------------VNRLSRGSNRLK---ELQGAVLVAHPENGELVAAVGSTqDFTG--FNRALDAKRQV 452
Cdd:COG5009   379 rwarrllsdnkspedvlkpgdviyVRKNGGGGWRLRqipEVNGALVSLDPKTGAILALVGGF-SFAQskFNRATQALRQP 457
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 453 GSLLKPVIYLSAIQSGrYNWASPVEDSSISIQSNGQ--SWTPKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFS 530
Cdd:COG5009   458 GSSFKPFVYSAALDKG-LTPASVINDAPISFWDGGGggVWRPKNYGGKFAGPITLRQGLEQSRNLVAVRLLDAVGVDYAA 536
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 531 NHLKRFGV-TSNIPSYPSIFLGAVDMSPMEVLGIYGNFATGGFKYPTKAIRTVVDQNGRLLTR----------------- 592
Cdd:COG5009   537 EYIKRFGFyTDELPPVLSMALGSGETTPLQMARAYAVFANGGKRVEPYFIDRIEDRNGKVIFRaeprvccrcnadeannq 616
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 593 ----YGLNVQQTIDPSSAYVLNYGLQQVMTSGTGRSAyntlpTSLK---LAGKSGTTNDTRDSWFAGYSGNYVSVVWLGL 665
Cdd:COG5009   617 eeqtLADYAPQVIDPMTAYQITSMLRGVVQRGTAARA-----GRLGrpdIAGKTGTTNDSKDAWFVGYTPDLVTGVWVGF 691
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 666 DDNKQTGL--TGSSGALPVWTNVMSQ-LRQKP-VNLRQPDDVQWHWIDSGSGYLAAQGCEGAMYIPLLRNTIPRKATAcg 741
Cdd:COG5009   692 DHPRSLGRgeTGGKLALPIWIDFMKVaLKGKPeKDFVPPPGIVSINIDRKTGLLANEGAPKTIIEYFIPGTQPTETES-- 769
                         730       740       750
                  ....*....|....*....|....*....|
gi 1191971857 742 lpHYQVEPTYNPETDGNQATPEQGDSIDNY 771
Cdd:COG5009   770 --VEGQRGFEIPDDDVPNANASNGQILELF 797
PbpC COG4953
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
157-687 2.21e-83

Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 227289 [Multi-domain]  Cd Length: 733  Bit Score: 281.20  E-value: 2.21e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 157 RVLIKLDKVPKPLIEALIATEDRNFYSHHGISIRGTARAIVSNVTGGKR-QGGSTLTQQLVKnfYLTP-EKTIKRKVNEA 234
Cdd:COG4953    58 RIPTPLEEVSPQFIEALINYEDKRFYWHPGVDPLALLRAAWQTLTSGRVvSGGSTLTMQVAR--LLEPrPRTLGGKIRQI 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 235 FMALLVELHYNKDEILEAYLNEVNLGQNgnysINGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKK 314
Cdd:COG4953   136 WRAIQLESRLSKREILELYLNRAPYGGN----IEGVRAASLAYFGKEPKRLSLAEAALLAVLPQNPERRRPDRNPEAAEA 211
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 315 RRDIVLHNMLVMGYLTQEQ-YETETARPLNVIAKPtlgPSRFPDFLDivrrQLRTEYQEGDltnqglRIFTTLDPIAQTK 393
Cdd:COG4953   212 ARNRVLTRMAVQGVWSEEEaKRARLEPVPNRRRQL---PFLAPHFAF----RLLNQYPKGD------IIVTTLDANLQRR 278
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 394 IQDSFKATVNRLSRGSNrlkelqGAVLVAHPENGELVAAVGStQDF-----TGFNRALDAKRQVGSLLKPVIYLSAIQSG 468
Cdd:COG4953   279 LEEQARDYASRLGPRNS------AAVLVVDNRTMEVLAYVGS-ADFfdasrSGHIDMVRALRSPGSTLKPFVYGLAFDQG 351
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 469 RYNWASPVEDSSISIqsngQSWTPKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGVTsniPSYP-- 546
Cdd:COG4953   352 LIHPETLLKDVPTRF----GDYRPENFDSNFHGPVSVREALIKSLNIPAVRLLEAVGPPRFAARLRQAGVH---LYLPeg 424
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 547 -----SIFLGAVDMSPMEVLGIYGNFATGGfkyPTKAIRTVVDQnGRLLTRyglnvqQTIDPSSAYVLNYGLQQVMTSGT 621
Cdd:COG4953   425 aapglSLILGGAGITLEDLAQLYAALANQG---KAGPLRDTLDD-DPLTER------TLLSPGAAWQILDILSDVARPGL 494
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1191971857 622 GRsayNTLPTSLKLAGKSGTTNDTRDSWFAGYSGNYVSVVWLGLDDNKQT-GLTGSSGALPVWTNVM 687
Cdd:COG4953   495 PN---GALPSVRPIAWKTGTSYGYRDAWSVGVFGRYVLGVWVGRFDGTPVpGLSGVATAAPLLFQVN 558
Transgly pfam00912
Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of ...
149-323 6.37e-81

Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.


Pssm-ID: 425943 [Multi-domain]  Cd Length: 177  Bit Score: 256.68  E-value: 6.37e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 149 IYPQHNEDRVLIKLDKVPKPLIEALIATEDRNFYSHHGISIRGTARAIVSNVTGGKR-QGGSTLTQQLVKNFYLTPEKTI 227
Cdd:pfam00912   5 LAELGEENRTWVPLDDIPPALKNAVLAIEDRRFYEHGGVDPKGIARALLKNLRSGRIvQGGSTITQQLAKNLFLTPERTL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 228 KRKVNEAFMALLVELHYNKDEILEAYLNEVNLGQNgnysINGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWR 307
Cdd:pfam00912  85 TRKLKEAVLALKLERRYSKDEILEAYLNTVYFGGG----AYGIEAAARAYFGKDASDLTLAEAALLAGLPQAPSRYNPLR 160
                         170
                  ....*....|....*.
gi 1191971857 308 NPEAAKKRRDIVLHNM 323
Cdd:pfam00912 161 NPERAKRRRNLVLDRM 176
mrcA PRK11636
penicillin-binding protein 1a; Provisional
140-719 2.60e-74

penicillin-binding protein 1a; Provisional


Pssm-ID: 183248 [Multi-domain]  Cd Length: 850  Bit Score: 258.91  E-value: 2.60e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 140 RLE-PMLI----GGIYPQHNEDRVL-IKLDKVPKPLIEALIATEDRNFYSHHGISIRGTARAI-VSNVTGGKRQGGSTLT 212
Cdd:PRK11636   43 RLQtPMQVysadGELIAQYGEKRRIpLTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAAsVALFSGHASQGASTIT 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 213 QQLVKNFYLTPEKTIKRKVNEAFMALLVELHYNKDEILEAYLNEVNLGqngnYSINGYGLASQFYFGMPLRELNIAQQAY 292
Cdd:PRK11636  123 QQLARNFFLSPERTLMRKIKEAFLAIRIEQLLTKDEILELYLNKIYLG----YRAYGVGAAAQVYFGKTVDQLTLSEMAV 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 293 LVGLVQGPTLYNPWRNPEAAKKRRDIVLHNMLVMGYLTQEQYETETARPLNV-IAKPTLGPSRfPDFLDIVRRQLRTEYQ 371
Cdd:PRK11636  199 IAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQAQYDQARSEPIVAnYHAPEIAFSA-PYLSEMVRQEMYNRYG 277
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 372 EGDLTNqGLRIFTTL-------------------------------------DPIAQTKIQDSFK----------ATVNR 404
Cdd:PRK11636  278 ENAYED-GYRVYTTItrkvqqaaqqavrnnvldydmrhgyrgpanvlwkvgeSAWDNKKITDTLKalptygpllpAVVTS 356
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 405 ---------LSRGSN--------------RLKELQGAV----------------------------------LVA-HPEN 426
Cdd:PRK11636  357 anpqeatamLADGSSvalpmegvrwarpyRSDTQQGPTprkvtdvvqtgqqiwvrqvddawwlaqvpdvnsaLVSiNPQN 436
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 427 GELVAAVGSTqDF--TGFNRALDAKRQVGSLLKPVIYLSAIQSGrYNWASPVEDSSISI--QSNGQSWTPKNYSGGEHGV 502
Cdd:PRK11636  437 GAVMALVGGF-DFnqSKFNRATQALRQVGSNIKPFLYTAAMDKG-LTLASMLNDVPISRwdAGAGSDWRPKNSPPQYAGP 514
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 503 VPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGVTS-NIPSYPSIFLGAVDMSPMEVLGIYGNFATGGFKYPTKAIRT 581
Cdd:PRK11636  515 IRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAqNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPYFISK 594
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 582 VVDQNGRLLTR---------------YG--------------------------------------LNVQQTIDPSSAYV 608
Cdd:PRK11636  595 IENDQGGVIFEakpkvacpecdipviYGdtqksnvlenddvenvatsqeqqnssvpmpqleqanqaLVAQNGAQEYAPHV 674
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 609 LNYGLQQVMTS-------------GTGRSAYNTLPTSlKLAGKSGTTNDTRDSWFAGYSGNYVSVVWLGLDDNKQT-GLT 674
Cdd:PRK11636  675 INTPLAFLIKSalntnifgepgwmGTGWRAGRDLKRR-DIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRRDlGRT 753
                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1191971857 675 GSSGAL---------------PVWTNVM-SQLRQKPVN-LRQPDDVQWHWIDSGSGYLAAQG 719
Cdd:PRK11636  754 TASGAIkdqisgyeggaksaqPAWDDYMkAALEGVPEQpLTPPPGIVTVNIDRSTGKLANGG 815
PRK11240 PRK11240
penicillin-binding protein 1C; Provisional
157-703 1.14e-45

penicillin-binding protein 1C; Provisional


Pssm-ID: 183049 [Multi-domain]  Cd Length: 772  Bit Score: 175.66  E-value: 1.14e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 157 RVLIKLDKVPKPLIEALIATEDRNFYSHHGISIRGTARAIVSNVTGGK-RQGGSTLTQQLVKnfYLTPE-KTIKRKVNEA 234
Cdd:PRK11240   62 RYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARAAWQDLTSGRvISGGSTLTMQVAR--LLDPHpRTFGGKIRQL 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 235 FMALLVELHYNKDEILEAYLNEVNLGQngnySINGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKK 314
Cdd:PRK11240  140 WRALQLEWHLSKREILTLYLNRAPFGG----TLQGIGAASWAYLGKSPANLSYAEAALLAVLPQAPSRLRPDRWPERAEA 215
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 315 RRDIVLHNMLVMGYLTQEQyeTETARPLNVIAKPTLGPSRFPDFldiVRRQLRTEYQEgdltnqglRIFTTLDPIAQTKI 394
Cdd:PRK11240  216 ARNKVLERMAEQGVWSAEQ--VKESREEPVWLAPRQMPQLAPLF---ARMMLGKSKSD--------KIVTTLDAGLQRRL 282
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 395 QDSFKATVNRLSRGSNrlkelqGAVLVAHPENGELVAAVGSTqDFTGFNR-----ALDAKRQVGSLLKPVIYLSAIQSGR 469
Cdd:PRK11240  283 EDLALNWKGRLPPRSS------LAMIVVDHTDMAVRGWVGSV-DLNDDSRfghvdMVNAIRSPGSVLKPFVYGLALDDGL 355
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 470 YNWASPVEDssisIQSNGQSWTPKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGVTSNIP--SYP- 546
Cdd:PRK11240  356 IHPASLLQD----VPRRTGDYRPGNFDSGFHGPVSMSEALVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPagAEPn 431
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 547 -SIFLGAVDMSPMEVLGIYGNFATGGfkyptKAIRTVVDQNGRLLTRyglnvqQTIDPSSAYVlnygLQQVMtSGTGRS- 624
Cdd:PRK11240  432 lSLILGGAGARLEDMVAAYSAFARHG-----KAAKLRLQPDDPLLER------PLMSPGAAWI----IRRIM-ADEAQPl 495
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 625 AYNTLPTSLKLAGKSGTTNDTRDSWFAGYSGNYVSVVWLGLDDNKQT-GLTGSSGALPVWTNV----MSQLRQK----PV 695
Cdd:PRK11240  496 PDAALPRVVPLAWKTGTSYGYRDAWAIGVNARYVIGIWTGRPDGTPVvGQFGFASAVPLLNQVnnllLSRSSQRganlPE 575

                  ....*...
gi 1191971857 696 NLRqPDDV 703
Cdd:PRK11240  576 DPR-PASV 582
PRK13481 PRK13481
glycosyltransferase; Provisional
163-336 1.95e-35

glycosyltransferase; Provisional


Pssm-ID: 184078 [Multi-domain]  Cd Length: 232  Bit Score: 134.16  E-value: 1.95e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 163 DKVPKPLIEALIATEDRNFYSHHGISIRGTARAIVSNVTGGKRQGGSTLTQQLVKNFYLTPEKTIKRKVNEAFMALLVEL 242
Cdd:PRK13481   51 DNMPEYVKGAFISMEDERFYKHHGFDLKGTTRALFSTISDRDVQGGSTITQQVVKNYFYDNERSFTRKVKELFVAHRVEK 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 243 HYNKDEILEAYLNEVNLGQNgNYSINGyglASQFYFG---------MPlrELNIAQQAYLVGLVQGPTLYNPWRNPEAAK 313
Cdd:PRK13481  131 QYSKNEILSFYLNNIYFGDN-QYTLEG---AANHYFGttvnknsttMS--HITVLQSAILASKVNAPSVYNINDMSENFT 204
                         170       180
                  ....*....|....*....|...
gi 1191971857 314 KRRDIVLHNMLVMGYLTQEQYET 336
Cdd:PRK13481  205 QRVSTNLEKMKQQNYINETQYQQ 227
mono_pep_trsgly TIGR02070
monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the ...
162-332 1.38e-28

monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273951 [Multi-domain]  Cd Length: 224  Bit Score: 114.48  E-value: 1.38e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 162 LDKVPKPLIEALIATEDRNFYSHHGISIRGTARAIVSNVTGGKR-QGGSTLTQQLVKNFYLTPEKTIKRKVNEAFMALLV 240
Cdd:TIGR02070  60 YDQISPNLKRAVIASEDAKFVEHHGFDWEAIQDALEKNEKSGKVvRGGSTISQQLAKNLFLWSGRSYLRKGLEAWATWML 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 241 ELHYNKDEILEAYLNEVNLGqNGNYsinGYGLASQFYFGMPLRELNIAQQAYLVGLVQGPTLYNPWRNPEAAKKRRDIVL 320
Cdd:TIGR02070 140 ETWWSKQRILEVYLNSVEWG-NGVF---GAEAAARYYFKRSASNLTRGQAARLAAVLPNPKYYDENRPGPYVRRKATWIL 215
                         170
                  ....*....|..
gi 1191971857 321 HNmlvMGYLTQE 332
Cdd:TIGR02070 216 KQ---MGYLGLP 224
Transpeptidase pfam00905
Penicillin binding protein transpeptidase domain; The active site serine is conserved in all ...
417-687 2.34e-22

Penicillin binding protein transpeptidase domain; The active site serine is conserved in all members of this family.


Pssm-ID: 425939 [Multi-domain]  Cd Length: 296  Bit Score: 98.26  E-value: 2.34e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 417 GAVLVAHPENGELVAAVGS-TQDFTGF-----NRALDAKRQVGSLLKPVIYLSAIQSGRYNWASPVEDSSISIQsNGQSW 490
Cdd:pfam00905   1 GSAVVLDPKTGEVLAMVGKpSYDPNGFigplrNRAVTSRYEPGSTFKPFTALAALDNGVLKPDETIFDWPGKQQ-GGKSI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 491 tpKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFGV------------TSNIPSY-----PSIFLGAV 553
Cdd:pfam00905  80 --GDWNQDQVGIGTLRQALEYSSNWYMQKLAQKLGADKLRSYLKKFGYgnktgiglpgenAGYLTPYwlegaTASFGIGL 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 554 DMSPMEVLGIYGNFATGGFKYPTKAIRTVVDQNGRLLTRyglnvQQTIDPSSAYVLNYGLQQVMTSGTGRSAYNTLPtsL 633
Cdd:pfam00905 158 TITPLQQAQAYAAIANGGKLVPPHLVKSIEDKVDPKVLN-----KLPISKSTAEKVKDMLRLVVNDGTGTGTAAVPG--Y 230
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1191971857 634 KLAGKSGTT-----------NDTRDSWFAGY--SGNYVSVVWLGLDDNKqtGLTGSSGALPVWTNVM 687
Cdd:pfam00905 231 KVAGKTGTAqvagpkgggyyDGAQIGWFVGYapADNPKYAFAVLIDDPK--RYYGGKVAAPIFKDIL 295
UB2H pfam14814
Bifunctional transglycosylase second domain; UB2H is the second domain of the ...
59-141 5.66e-22

Bifunctional transglycosylase second domain; UB2H is the second domain of the transglycosylases, or penicillin-binding proteins PBP1bs)), the multi-domain membrane proteins essential for cell wall synthesis that are targeted by penicillin antibiotics. The exact function of the UB2H domain is uncertain, but it may act as the binding component of PBP1b with different binding partners, or it may participate in the regulation between DNA repair and/or synthesis and cell wall formation during the bacterial cell cycle.


Pssm-ID: 434234 [Multi-domain]  Cd Length: 85  Bit Score: 90.69  E-value: 5.66e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857  59 YTNAPISQADFTQELKLLGYKSSENYTKSGNYVSSGNELYVHTRGFDFGDSVEPEQVLKVTFADEQVSEVSATKP-SSTG 137
Cdd:pfam14814   2 YPGQALSAAQLEQELKLLGYRKVSNPTRPGEYSVSGNRIELYRRGFDFPDGAEPARRVRLRFAGGRVARLQDLDTgRDLA 81

                  ....
gi 1191971857 138 IARL 141
Cdd:pfam14814  82 LVRL 85
FtsI COG0768
Cell division protein FtsI/penicillin-binding protein 2 [Cell cycle control, cell division, ...
379-690 1.10e-17

Cell division protein FtsI/penicillin-binding protein 2 [Cell cycle control, cell division, chromosome partitioning, Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223839 [Multi-domain]  Cd Length: 599  Bit Score: 87.46  E-value: 1.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 379 GLRIFTTLDPIAQTKIQDSFKATVNrlsrgsNRLKelQGAVLVAHPENGElVAAVGSTQDF--TGFNRALDAKRQV---- 452
Cdd:COG0768   238 GKDVQLTIDLRLQKAAEEALDKAVA------NKAK--GGAAVVLDPKTGE-ILAMASSPSYdpNLFVSSKDYDKPRkpll 308
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 453 ----------GSLLKPVIYLSAIQSGRYNwaspVEDSSISIQSNGQSWTPKNYSGGEHG--VVPMVQALSHSYNLSSVRL 520
Cdd:COG0768   309 nravtgtyepGSTFKPITAAAALETGNTG----LFDPGSVLDGNGPKIRIWGRTGHDYGgrPLTLTEALQKSSNVGFAKL 384
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 521 GQEFGLSTFSNHLKRFGV------------TSNIPSYPSIFLGAVD-----------MSPMEVLGIYGNFATGGFKYPTK 577
Cdd:COG0768   385 ALRLGPDGLYDYLKKFGFgqktgidlpgetSGLLPSREPWRWGPIDlatlsigqgllVTPLQLAQAYATIANGGKLVKPH 464
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 578 AIRTVVDQNGRLLTRYGLNVQQTIDPSSAYVLNYGLQQVMTSGTGRSAYNTLPTSLKLAGKSGTT-----------NDTR 646
Cdd:COG0768   465 LVKGIEDPVGENKKEPPVLKKRVISPETAEKVREGMRAVVNDGGGGTGKAAAVPGYRIAGKTGTAqkagpggggysKGRY 544
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1191971857 647 DSWFAGY----SGNYVSVVwlGLDDNKqtGLTGSSGALPVWTNVMSQL 690
Cdd:COG0768   545 HAWFVGFapadNPKYAVAV--LVDNPG--GGYGGAVAAPVFKKIMERL 588
pbp2_mrdA TIGR03423
penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 ...
410-687 3.44e-17

penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 274573 [Multi-domain]  Cd Length: 592  Bit Score: 85.65  E-value: 3.44e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 410 NRLKELQGAVLVAHPENGELVAAVgSTQDF------TG-----------------FNRALDAKRQVGSLLKPVIYLSAIQ 466
Cdd:TIGR03423 242 KALGGRRGAVVVMDPRTGEILAMV-STPSFdpnlfvDGisskdykallndpdrplLNRAIQGVYPPGSTFKPVVALAALE 320
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 467 SGRYNWASPVEDSSiSIQSNGQSWtpKNYSGGEHGVVPMVQALSHSYNLSSVRLGQEFGLSTFSNHLKRFG--------- 537
Cdd:TIGR03423 321 EGVITPETRIYCPG-YFQLGGRRF--RCWKRGGHGRVDLRKAIEESCDVYFYQLALRLGIDKIAEYAKRFGfgqktgidl 397
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 538 ---VTSNIPS------------YP------SIFLGAVDMSPMEVLGIYGNFATGGFKYPTKAIRTVVDQNGRLLTRYGLN 596
Cdd:TIGR03423 398 pgeKSGLVPSrewkrkrfgqpwYPgdtlnvSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVRRTEPE 477
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191971857 597 VQQTIDPSSAY--VLNYGLQQVMTS--GTGRSAYntLPTSLKLAGKSGT-----------------TNDTRD-SWFAGYs 654
Cdd:TIGR03423 478 VLRPLPISPENldVVREGMRDVVNGpgGTARRAR--LGLPYKMAGKTGTaqvvslkqgekydaeqiPERLRDhALFVAF- 554
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1191971857 655 GNY------VSVVWlglddnkQTGLTGSSGALPVWTNVM 687
Cdd:TIGR03423 555 APYdnpkiaVAVIV-------EHGGGGSSAAAPIARKIM 586
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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