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Conserved domains on  [gi|119389562]
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Chain D, Cytochrome c-L

Protein Classification

cytochrome_MoxG family protein( domain architecture ID 10024009)

cytochrome_MoxG family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
cytochrome_MoxG TIGR03872
cytochrome c(L), periplasmic; This model describes a periplasmic c-type cytochrome that serves ...
 2-135 2.47e-88

cytochrome c(L), periplasmic; This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans. [Energy metabolism, Electron transport]


:

Pssm-ID: 274829  Cd Length: 133  Bit Score: 253.11  E-value: 2.47e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562    2 PQFFNIIDGSPLNFDDAMEeGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYP 81
Cdd:TIGR03872   1 LVFRNTVTGEPLDLSGAKE-GRDTEAVKQFLETGENPYNGDAEALKKGESLFATACSGCHGHLAEGKLGPGLNDDYWTYP 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 119389562   82 GNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLT 135
Cdd:TIGR03872  80 KNATDKGLFETIFGGANGMMGPQYGNLTLDEMLQIMAWIRHLYTGDPKKAEWLT 133
 
Name Accession Description Interval E-value
cytochrome_MoxG TIGR03872
cytochrome c(L), periplasmic; This model describes a periplasmic c-type cytochrome that serves ...
 2-135 2.47e-88

cytochrome c(L), periplasmic; This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans. [Energy metabolism, Electron transport]


Pssm-ID: 274829  Cd Length: 133  Bit Score: 253.11  E-value: 2.47e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562    2 PQFFNIIDGSPLNFDDAMEeGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYP 81
Cdd:TIGR03872   1 LVFRNTVTGEPLDLSGAKE-GRDTEAVKQFLETGENPYNGDAEALKKGESLFATACSGCHGHLAEGKLGPGLNDDYWTYP 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 119389562   82 GNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLT 135
Cdd:TIGR03872  80 KNATDKGLFETIFGGANGMMGPQYGNLTLDEMLQIMAWIRHLYTGDPKKAEWLT 133
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
42-124 4.32e-09

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 52.26  E-value: 4.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562  42 DPEILPEAEELYAGMCSGCHGHYAEGKIG--PGLNDAywtYPGNETDVGLFST-LYGGATGQMGPMWGSLTLDEMLRTMA 118
Cdd:COG2010   85 DAEALARGKALYEQNCAACHGADGKGGLGaaPNLTDD---ALYGGDPEALVETiLNGRPGGAMPAFGGQLSDEEIAALAA 161


                 ....*.
gi 119389562 119 WVRHLY 124
Cdd:COG2010  162 YLRSLS 167
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 36-123 8.71e-09

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 52.51  E-value: 8.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562  36 ENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWtypGNETDVGLFSTLYGGATGQ-MGPMWGSLTLDEML 114
Cdd:PRK14486 205 PNPFATDVAAIAKGKALYDANCAACHGDEAQGQEGVALNDIDD---GDLPDAAYFGMIKGGSDAKgMPGFGGDLSDDDIW 281


                 ....*....
gi 119389562 115 RTMAWVRHL 123
Cdd:PRK14486 282 AIVAYIRSQ 290
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 51-123 3.31e-04

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 37.52  E-value: 3.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562   51 ELYAGMCSGCHGhyAEGK----IGPGLNDAYWTYPGNETDV---------GLFSTLYGGATGQMGPMWGSLTLDEMLRTM 117
Cdd:pfam00034   5 KLFAANCAACHG--VNGEgagaGGPDLAGLAARYPGDALGAirenkhaigGGGVDRAGGPPGTGMPAFDGLTDEEIADLV 82


                  ....*.
gi 119389562  118 AWVRHL 123
Cdd:pfam00034  83 AYLLSL 88
 
Name Accession Description Interval E-value
cytochrome_MoxG TIGR03872
cytochrome c(L), periplasmic; This model describes a periplasmic c-type cytochrome that serves ...
 2-135 2.47e-88

cytochrome c(L), periplasmic; This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans. [Energy metabolism, Electron transport]


Pssm-ID: 274829  Cd Length: 133  Bit Score: 253.11  E-value: 2.47e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562    2 PQFFNIIDGSPLNFDDAMEeGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYP 81
Cdd:TIGR03872   1 LVFRNTVTGEPLDLSGAKE-GRDTEAVKQFLETGENPYNGDAEALKKGESLFATACSGCHGHLAEGKLGPGLNDDYWTYP 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 119389562   82 GNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLT 135
Cdd:TIGR03872  80 KNATDKGLFETIFGGANGMMGPQYGNLTLDEMLQIMAWIRHLYTGDPKKAEWLT 133
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
42-124 4.32e-09

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 52.26  E-value: 4.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562  42 DPEILPEAEELYAGMCSGCHGHYAEGKIG--PGLNDAywtYPGNETDVGLFST-LYGGATGQMGPMWGSLTLDEMLRTMA 118
Cdd:COG2010   85 DAEALARGKALYEQNCAACHGADGKGGLGaaPNLTDD---ALYGGDPEALVETiLNGRPGGAMPAFGGQLSDEEIAALAA 161


                 ....*.
gi 119389562 119 WVRHLY 124
Cdd:COG2010  162 YLRSLS 167
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 36-123 8.71e-09

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 52.51  E-value: 8.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562  36 ENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWtypGNETDVGLFSTLYGGATGQ-MGPMWGSLTLDEML 114
Cdd:PRK14486 205 PNPFATDVAAIAKGKALYDANCAACHGDEAQGQEGVALNDIDD---GDLPDAAYFGMIKGGSDAKgMPGFGGDLSDDDIW 281


                 ....*....
gi 119389562 115 RTMAWVRHL 123
Cdd:PRK14486 282 AIVAYIRSQ 290
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 42-118 2.64e-05

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 42.57  E-value: 2.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562   42 DPEILPEAEELYAGMCSGCHGHYAEGKIG---PGLNDAYWTYPGNETDVglFSTLYGGATGQMgPMWGSLTLDEMLRTMA 118
Cdd:TIGR00782 199 DEALAAKGQELFADNCTTCHGEDGKGLQElgaPNLTDDVWLYGGDLKTI--TTTITNGRGGVM-PAWGPRLSEAQIKALA 275
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 51-123 3.31e-04

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 37.52  E-value: 3.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562   51 ELYAGMCSGCHGhyAEGK----IGPGLNDAYWTYPGNETDV---------GLFSTLYGGATGQMGPMWGSLTLDEMLRTM 117
Cdd:pfam00034   5 KLFAANCAACHG--VNGEgagaGGPDLAGLAARYPGDALGAirenkhaigGGGVDRAGGPPGTGMPAFDGLTDEEIADLV 82


                  ....*.
gi 119389562  118 AWVRHL 123
Cdd:pfam00034  83 AYLLSL 88
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
48-80 1.27e-03

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 35.46  E-value: 1.27e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 119389562   48 EAEELYAGMCSGCHGhyaEGKIGPGLNDAYWTY 80
Cdd:pfam13442   5 AGEALYAANCASCHG---TGGAGPSLAGRALPP 34
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
47-123 2.12e-03

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 35.48  E-value: 2.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119389562  47 PEAEELYAGMCSGCHGHYAEGKIGP------GLNDAYwtypgnetdvgLFSTLYGGATGQ-----MGPMWGSLTLDEMLR 115
Cdd:COG2863   15 AARGKAYAAACAACHGADGEGNPGGgaprlaGQHAEY-----------LVAQLKAFRSGArkngvMPAIAKGLSDEDIKA 83


                 ....*...
gi 119389562 116 TMAWVRHL 123
Cdd:COG2863   84 LAAYIASL 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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