|
Name |
Accession |
Description |
Interval |
E-value |
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
510-717 |
3.29e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 80.04 E-value: 3.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 510 AQQVLEQALDHQPTCALAAMMNDVKALRVLVKVLRARDESALDVIQKMHDLQLRVIIRASSEHQADLEEQKKLLSSICCD 589
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 590 WAQEFHLRHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKE 669
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1207166876 670 EAVKIYTSIMKRNPDNFHAMAKFLQILRRMGKLEDAVSVFNACEKFNP 717
Cdd:COG3914 164 EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
176-718 |
4.76e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.66 E-value: 4.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 176 DPGNLFGLMGKIEFFMLKQNESSALDIIHQILLIYPDFTPALLMKMKIFMALQDYEQTEDIAHRVLERDAQDLKALQMLT 255
Cdd:TIGR02917 155 DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 256 VIAVvKDGDTELVKQRLQALVSalelREPCNPSLHvEITAVIsRLIRDQFQFNLIKAQALLRS----------------- 318
Cdd:TIGR02917 235 TILI-EAGEFEEAEKHADALLK----KAPNSPLAH-YLKALV-DFQKKNYEDARETLQDALKSapeylpalllagaseyq 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 319 -GDVKSAIQCLNLIMKmpgfQGPS--------------EGPQSSIISSSERL--------CVFLQLSEALRLNGDQHEAA 375
Cdd:TIGR02917 308 lGNLEQAYQYLNQILK----YAPNshqarrllasiqlrLGRVDEAIATLSPAlgldpddpAALSLLGEAYLALGDFEKAA 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 376 KVLEDAvvffrgTPEETQLTLAHVDLALTR---DDVDAAVLILQNILPTESSYIQAREKMAHIYLERRN-DKKLFIAcyK 451
Cdd:TIGR02917 384 EYLAKA------TELDPENAAARTQLGISKlsqGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQfDKALAAA--K 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 452 EITEQLPGAHTSILLADAFM----KIHQAVCYYETALKRDSLDCVLSLELSELLLKLKRFNRAQQVLEQALDHQPtcala 527
Cdd:TIGR02917 456 KLEKKQPDNASLHNLLGAIYlgkgDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP----- 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 528 ammNDVKALRVLVKV--LRARDESALDVIQKmhdlqlrviirASSEHQADLEEQKKLlssiccdwAQEFHLRHELEKAKR 605
Cdd:TIGR02917 531 ---KNLRAILALAGLylRTGNEEEAVAWLEK-----------AAELNPQEIEPALAL--------AQYYLGKGQLKKALA 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 606 HYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSIMKRNPDN 685
Cdd:TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668
|
570 580 590
....*....|....*....|....*....|...
gi 1207166876 686 FHAMAKFLQILRRMGKLEDAVSVFNACEKFNPL 718
Cdd:TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
400-710 |
9.09e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.84 E-value: 9.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 400 DLALTRDDVDAAVLILQNILPTESSYIQAREKMAHIYlERRNDKKLFIACYKEITEQLPGAHTSIL-LADAFMKihqavc 478
Cdd:COG2956 16 LNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLY-RRRGEYDRAIRIHQKLLERDPDRAEALLeLAQDYLK------ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 479 yyetalkrdsldcvlslelselllkLKRFNRAQQVLEQALDHQPtcalaammNDVKALRVLVKV-LRARD-ESALDVIQK 556
Cdd:COG2956 89 -------------------------AGLLDRAEELLEKLLELDP--------DDAEALRLLAEIyEQEGDwEKAIEVLER 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 557 MHDLQlrviirASSEHqadleeqkkllssICCDWAQEFHLRHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDY 636
Cdd:COG2956 136 LLKLG------PENAH-------------AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207166876 637 CEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSIMKRNPDNfHAMAKFLQILRRMGKLEDAVSVFN 710
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALALLE 269
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
506-717 |
5.94e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.14 E-value: 5.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 506 RFNRAQQVLEQALDHQPtcalaammNDVKALRVLVKVLRARDE--SALDVIQKMHDLQlrviirassehqadlEEQKKLL 583
Cdd:COG2956 23 QPDKAIDLLEEALELDP--------ETVEAHLALGNLYRRRGEydRAIRIHQKLLERD---------------PDRAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 584 SSIccdwAQEFHLRHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLY 663
Cdd:COG2956 80 LEL----AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1207166876 664 WKNQKEEAVKIYTSIMKRNPDNFHAMAKFLQILRRMGKLEDAVSVFNACEKFNP 717
Cdd:COG2956 156 EQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP 209
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
591-717 |
7.56e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.75 E-value: 7.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 591 AQEFHLRHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEE 670
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1207166876 671 AVKIYTSIMKRNPDNFHAMAKFLQILRRMGKLEDAVSVFNACEKFNP 717
Cdd:COG4783 91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
181-487 |
9.28e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 66.68 E-value: 9.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 181 FGLMGKIEFFMLKQNESSALDIIHQILLIYPDFTPALLMKMKIFMALQDYEQTEDIAHRVLERDAQDLKALQMLTVIAvV 260
Cdd:COG2956 9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY-L 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 261 KDGDTELVKQRLQALVSalelREPCNPSLHVEItavisrlirdqfqfnlikAQALLRSGDVKSAIQCLNLIMKMpgfqgp 340
Cdd:COG2956 88 KAGLLDRAEELLEKLLE----LDPDDAEALRLL------------------AEIYEQEGDWEKAIEVLERLLKL------ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 341 seGPQSSIIssserlcvFLQLSEALRLNGDQHEAAKVLEDAVvffRGTPEETQLTLAHVDLALTRDDVDAAVLILQNILP 420
Cdd:COG2956 140 --GPENAHA--------YCELAELYLEQGDYDEAIEALEKAL---KLDPDCARALLLLAELYLEQGDYEEAIAALERALE 206
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 421 TESSYIQAREKMAHIYlERRNDKKLFIACYKEITEQLPGAHTSILLADAFMKIH---QAVCYYETALKRD 487
Cdd:COG2956 207 QDPDYLPALPRLAELY-EKLGDPEEALELLRKALELDPSDDLLLALADLLERKEgleAALALLERQLRRH 275
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
602-717 |
3.90e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 3.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 602 KAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSIMKR 681
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 1207166876 682 NPDNFHAMAKFLQILRRMGKLEDAVSVFNACEKFNP 717
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
588-705 |
9.70e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.78 E-value: 9.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 588 CDWAQEFHLRHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQ 667
Cdd:COG3914 116 FNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGR 195
|
90 100 110
....*....|....*....|....*....|....*...
gi 1207166876 668 KEEAVKIYTSIMKRNPDNFHAMAKFLQILRRMGKLEDA 705
Cdd:COG3914 196 LEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
599-761 |
1.14e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.10 E-value: 1.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 599 ELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSI 678
Cdd:COG0457 23 RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 679 MKRNPDNFHAMAKFLQILRRMGKLEDAVSVFNACEKFNPltlREAGYQYCKGLYLWHSHQTSSSLTHLNKARGDADWGKL 758
Cdd:COG0457 103 LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP---DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
...
gi 1207166876 759 ALE 761
Cdd:COG0457 180 AAA 182
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
358-682 |
1.37e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.21 E-value: 1.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 358 FLQLSEALRLNGDQHEAAKVLEDAVvffRGTPEETQLTLAHVDLALTRDDVDAAVLILQNILPTESSYIQAREKMAHIYL 437
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEAL---ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 438 ERRNDKKLfIACYKEITEQLPGAHTSI-LLADAFMKIHQ---AVCYYETALKRDSLDCVLSLELSELLLKLKRFNRAQQV 513
Cdd:COG2956 88 KAGLLDRA-EELLEKLLELDPDDAEALrLLAEIYEQEGDwekAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 514 LEQALDHQPTCALAAMMndvkalrvlvkvlrardesaldviqkmhdlqlrviirassehQADLEEQKKllssiccdwaqe 593
Cdd:COG2956 167 LEKALKLDPDCARALLL------------------------------------------LAELYLEQG------------ 192
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 594 fhlrhELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLlADTLYWKNQKEEAVK 673
Cdd:COG2956 193 -----DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALA 266
|
....*....
gi 1207166876 674 IYTSIMKRN 682
Cdd:COG2956 267 LLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
599-727 |
2.33e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 59.25 E-value: 2.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 599 ELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSI 678
Cdd:COG0457 57 RYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERA 136
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1207166876 679 MKRNPDNFHAMAKFLQILRRMGKLEDAVSVFNACEKFNPLTLREAGYQY 727
Cdd:COG0457 137 LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGE 185
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
617-717 |
1.51e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 617 DQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSIMKRNPDNFHAMAKFLQIL 696
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100
....*....|....*....|.
gi 1207166876 697 RRMGKLEDAVSVFNACEKFNP 717
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDP 103
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
591-690 |
1.81e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.86 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 591 AQEFHLRHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEE 670
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90 100
....*....|....*....|
gi 1207166876 671 AVKIYTSIMKRNPDNFHAMA 690
Cdd:COG4235 104 AIAAWQKLLALLPADAPARL 123
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
812-998 |
5.47e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.51 E-value: 5.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 812 RSEQDKAALLLNECRIYSR--KHTQVETAVLELADTLANNvmlEECLLLMAEGFVQLKQIPRARNFLKRLTRMNwsDTNA 889
Cdd:COG2956 70 ERDPDRAEALLELAQDYLKagLLDRAEELLEKLLELDPDD---AEALRLLAEIYEQEGDWEKAIEVLERLLKLG--PENA 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 890 DYMekgcLLLADMYIKMGKYTEGRTLLHRCTQHNKSCSKAYEYEGFMLENEQRYRDAALQYELAWRHS-RQPAVGYRLAL 968
Cdd:COG2956 145 HAY----CELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpDYLPALPRLAE 220
|
170 180 190
....*....|....*....|....*....|
gi 1207166876 969 NYLKSQNYTLAVDVCRQVLQQHPDYPQINT 998
Cdd:COG2956 221 LYEKLGDPEEALELLRKALELDPSDDLLLA 250
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
599-749 |
8.05e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.63 E-value: 8.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 599 ELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSI 678
Cdd:TIGR02917 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKA 219
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1207166876 679 MKRNPDNFHAMAKFLQILRRMGKLEDAVSVFNACEKFNPltlREAGYQYCKGLYLWHSHQTSSSLTHLNKA 749
Cdd:TIGR02917 220 IALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP---NSPLAHYLKALVDFQKKNYEDARETLQDA 287
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
112-685 |
1.65e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.47 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 112 ALYYAALIYWILQMNLKAKTCIKKMLKISETSPEGLIMKGWIvltsDLEENRPQ-AIQYFNSGVR-DPGNLFG-LMGKIE 188
Cdd:TIGR02917 229 VLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALV----DFQKKNYEdARETLQDALKsAPEYLPAlLLAGAS 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 189 FFMLKQNESsALDIIHQILLIYPDFTPALLMKMKIFMALQDYEQTEDIAHRVLERDAQDLKALQMLTvIAVVKDGDTELV 268
Cdd:TIGR02917 305 EYQLGNLEQ-AYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLG-EAYLALGDFEKA 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 269 KqRLQALVSALElrePCNPSLHVEITavISRL--------IRD-----QFQFNLIKAQALL-----RSGDVKSAIQCL-N 329
Cdd:TIGR02917 383 A-EYLAKATELD---PENAAARTQLG--ISKLsqgdpseaIADletaaQLDPELGRADLLLilsylRSGQFDKALAAAkK 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 330 LIMKMPGfqGPSEGPQSSIISSSERLCV--FLQLSEALRLNGDQ----------HEAAKVLEDAVVFF----RGTPEETQ 393
Cdd:TIGR02917 457 LEKKQPD--NASLHNLLGAIYLGKGDLAkaREAFEKALSIEPDFfpaaanlariDIQEGNPDDAIQRFekvlTIDPKNLR 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 394 LTLAHVDLALTRDDVDAAVLILQNILPTESSYIQAREKMAHiYLERRNDKKLFIACYKEITEQLPGAHTSI-LLADAFM- 471
Cdd:TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ-YYLGKGQLKKALAILNEAADAAPDSPEAWlMLGRAQLa 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 472 --KIHQAVCYYETALKRDSLDCVLSLELSELLLKLKRFNRAQQVLEQALDHQPtcalaammNDVKALRVLVKVLRA--RD 547
Cdd:TIGR02917 614 agDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP--------DNTEAQIGLAQLLLAakRT 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 548 ESALDVIQKMHdlQLRVIIRASSEHQADLE-EQKKLLSSIccdwaQEFHLRHELE--------------------KAKRH 606
Cdd:TIGR02917 686 ESAKKIAKSLQ--KQHPKAALGFELEGDLYlRQKDYPAAI-----QAYRKALKRApssqnaiklhrallasgntaEAVKT 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 607 YTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAA----AMLL------------------------ 658
Cdd:TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVlnnlAWLYlelkdpraleyaeralklapnipa 838
|
650 660 670
....*....|....*....|....*....|..
gi 1207166876 659 -ADTLYW----KNQKEEAVKIYTSIMKRNPDN 685
Cdd:TIGR02917 839 iLDTLGWllveKGEADRALPLLRKAVNIAPEA 870
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
856-993 |
1.84e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.35 E-value: 1.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 856 LLLMAEGFVQLKQIPRARNFLKRLTRMNwsDTNADYMekgcLLLADMYIKMGKYTEGRTLLHRCTQHNKSCSKAYEYEGF 935
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELD--PDNPEAF----ALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1207166876 936 MLENEQRYRDAALQYELAWRHS-RQPAVGYRLALNYLKSQNYTLAVDVCRQVLQQHPDY 993
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
594-684 |
2.72e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.40 E-value: 2.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 594 FHLRHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELcVKILQLQQEHTAAAMLLADTLYWKNQKEEAVK 673
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 1207166876 674 IYTSIMKRNPD 684
Cdd:COG3063 81 YLERALELDPS 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
42-276 |
3.30e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 52.81 E-value: 3.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 42 RFFKAFATLMEGHSQEALQELI-LLKDHP-HLSLCSTVALIYAHKHcETvdEDAVNELNSELKRSGSTAgeRALYYAALI 119
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEeALELDPeTVEAHLALGNLYRRRG-EY--DRAIRIHQKLLERDPDRA--EALLELAQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 120 YWILQMNLKAKTCIKKMLKISETSPEGLIMKGWIVLtsdLEENRPQAIQYFNSGVR-DPGNLFGLMGKIEFFMLKQNESS 198
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYE---QEGDWEKAIEVLERLLKlGPENAHAYCELAELYLEQGDYDE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207166876 199 ALDIIHQILLIYPDFTPALLMKMKIFMALQDYEQTEDIAHRVLERDAQDLKALQMLTVIAvVKDGDTELVKQRLQALV 276
Cdd:COG2956 163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY-EKLGDPEEALELLRKAL 239
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
415-674 |
6.16e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.46 E-value: 6.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 415 LQNILPTESSYIQAREKMAHIYLERRNDKKLFIACYKEITEQLPGAHTSILLADAFMKIHQAVCYYETALKRDSLDCVLS 494
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 495 LELSELLLKLKRFNRAQQVLEQALDHQPtcalaammNDVKALRVLVKVLRA--RDESALDVIQKmhdlqlrvIIRASSEH 572
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALALNP--------DNAEALFNLGNLLLAlgRLEEALAALRR--------ALALNPDF 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 573 qadleeqkkllSSICCDWAQEFHLRHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHT 652
Cdd:COG3914 146 -----------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNA 214
|
250 260
....*....|....*....|..
gi 1207166876 653 AAAMLLADTLYWKNQKEEAVKI 674
Cdd:COG3914 215 DAHSNLLFALRQACDWEVYDRF 236
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
599-685 |
7.92e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.42 E-value: 7.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 599 ELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSI 678
Cdd:COG4783 53 DLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
....*..
gi 1207166876 679 MKRNPDN 685
Cdd:COG4783 133 LELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
534-683 |
1.10e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 534 KALRVLVKVLRARDESALDVIQKMHDLQLRVIIRASSEHQADLEEQKKLLSSICCDWAQEFHLRHELEKAKRHYTDALNH 613
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 614 RPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSIMKRNP 683
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
110-275 |
3.10e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.11 E-value: 3.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 110 ERALYYAALIYWILQMNLKAKTCIKKMLKISETSPEGLIMKGwivLTSDLEENRPQAIQYFNSGVR-DPGNLFGLMGKIE 188
Cdd:COG2956 110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA---ELYLEQGDYDEAIEALEKALKlDPDCARALLLLAE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 189 FFMLKQNESSALDIIHQILLIYPDFTPALLMKMKIFMALQDYEQTEDIAHRVLERDAQDLKALqMLTVIAVVKDGDTELV 268
Cdd:COG2956 187 LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAAL 265
|
....*..
gi 1207166876 269 KQRLQAL 275
Cdd:COG2956 266 ALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
624-990 |
4.77e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.34 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 624 LAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSIMKRNPDNFHAMAKFLQILRRMGKLE 703
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 704 DAVSVFNACEKFNPLTLReagyqyckglylwhshqtssslthlnkargdadwgklALEMMIHICLNpdkiifggeildkg 783
Cdd:COG2956 94 RAEELLEKLLELDPDDAE-------------------------------------ALRLLAEIYEQ-------------- 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 784 lrenisesenemrmntahnllkmfhprcRSEQDKAALLLNEcriysrkhtqvetaVLELADTLAnnvmleECLLLMAEGF 863
Cdd:COG2956 123 ----------------------------EGDWEKAIEVLER--------------LLKLGPENA------HAYCELAELY 154
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 864 VQLKQIPRARNFLKRLTRMNWSDTNADymekgcLLLADMYIKMGKYTEGRTLLHRCTQHNKSCSKAYEYEGFMLENEQRY 943
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARAL------LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1207166876 944 RDAALQYELAWRHSRQPAVGYRLALNYLKSQNYTLAVDVCRQVLQQH 990
Cdd:COG2956 229 EEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
615-749 |
7.17e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.46 E-value: 7.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 615 PDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSIMKRNPDNFHAMAKFLQ 694
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1207166876 695 ILRRMGKLEDAVSVFNACEKFNPltlREAGYQYCKGLYLWHSHQTSSSLTHLNKA 749
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDP---DDAEALYNLGLALLELGRYDEAIEAYERA 136
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
897-1000 |
1.13e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.95 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 897 LLLADMYIKMGKYTEGRTLLHRCTQHNKSCSKAYEYEGFMLENEQRYRDAALQYELAWR-HSRQPAVGYRLALNYLKSQN 975
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALElDPDEPEARLNLGLALLKAGD 87
|
90 100
....*....|....*....|....*
gi 1207166876 976 YTLAVDVCRQVLQQHPDYPQINTEI 1000
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRL 112
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
175-519 |
2.46e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.54 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 175 RDPGNLFGLMGKIEFFMLKQNESSALDIIHQILLIYPDFTPALLMKMKIFMALQDYEQTEDIAHRVLERDAQDLKALQML 254
Cdd:TIGR02917 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 255 TVI-AVVKDgdtelVKQRLQALVSALELREpcnpslhveitavisrlirDQFQFNLIKAQALLRSGDVKSAIQCLNLIMK 333
Cdd:TIGR02917 642 ADAyAVMKN-----YAKAITSLKRALELKP-------------------DNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 334 M-------PGFQGP----SEGPQSSIISSSERL------CVFLQLSEALRLNGDQHEAAKVLEDavvFFRGTPEETQLTL 396
Cdd:TIGR02917 698 QhpkaalgFELEGDlylrQKDYPAAIQAYRKALkrapssQNAIKLHRALLASGNTAEAVKTLEA---WLKTHPNDAVLRT 774
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 397 AHVDLALTRDDVDAAVLILQNILPTESSYIQAREKMAHIYLERRNDKKLFIAcyKEITEQLPGAHTSillADAFMKI--- 473
Cdd:TIGR02917 775 ALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALEYA--ERALKLAPNIPAI---LDTLGWLlve 849
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1207166876 474 ----HQAVCYYETALKRDSLDCVLSLELSELLLKLKRFNRAQQVLEQALD 519
Cdd:TIGR02917 850 kgeaDRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
601-711 |
5.82e-05 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 45.64 E-value: 5.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 601 EKAKRHYTDALNHR-PDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTA--AAMLLADTLYWKNQKEEAVKIYTS 677
Cdd:COG4700 106 DEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSsdAHLLYARALEALGDLEAAEAELEA 185
|
90 100 110
....*....|....*....|....*....|....
gi 1207166876 678 IMKRNPdNFHAMAKFLQILRRMGKLEDAVSVFNA 711
Cdd:COG4700 186 LARRYS-GPEARYRYAKFLARQGRTAEAKELLEE 218
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
590-718 |
7.18e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 7.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 590 WAQEFHLRHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKE 669
Cdd:COG5010 26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKD 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1207166876 670 EAVKIYTSIMKRNPDNFHAMAKFLQILRRMGKLEDAVSVFNACEKFNPL 718
Cdd:COG5010 106 EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
627-721 |
8.28e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 8.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 627 LYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKiYTSIMKRNPDNFHAMAKFLQILRRMGKLEDAV 706
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 1207166876 707 SVFNACEKFNPLTLR 721
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
402-717 |
1.54e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.84 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 402 ALTRDDVDAAVLILQNILPTESSYIQAREKMAHIYLERRNdkklFIACYKEITEQL----PGAHTSILLADAFMKIHQAV 477
Cdd:TIGR02917 32 YLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGD----YAAAEKELRKALslgyPKNQVLPLLARAYLLQGKFQ 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 478 CYYETALKRDSLD----CVLSLELSELLLKLKRFNRAQQVLEQALDHQPTcALAAMMndvkALRVLvKVLRARDESALDV 553
Cdd:TIGR02917 108 QVLDELPGKTLLDdegaAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKL----GLAQL-ALAENRFDEARAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 554 IQKmhdlqlrvIIRASSEHQADLEEQKKLLSSiccdwaqefhlRHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQK 633
Cdd:TIGR02917 182 IDE--------VLTADPGNVDALLLKGDLLLS-----------LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 634 LDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSIMKRNPDNFHAMAKFLQILRRMGKLEDAVSVFNACE 713
Cdd:TIGR02917 243 FEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQIL 322
|
....
gi 1207166876 714 KFNP 717
Cdd:TIGR02917 323 KYAP 326
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
597-675 |
1.70e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.23 E-value: 1.70e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1207166876 597 RHELEKAKRHYTDALNHRPDDQQVLLHLAALYYEQQKLDYCEELCVKILQLQQEHTAAAMLLADTLYWKNQKEEAVKIY 675
Cdd:COG0457 89 LGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
899-996 |
7.08e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.30 E-value: 7.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 899 LADMYIKMGKYTEGRTLLHRCTQHNKSCSKAYEYEGFMLENEQRYRDAALQYELAWR-HSRQPAVGYRLALNYLKSQNYT 977
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALElDPDDAEALNNLGLALQALGRYE 93
|
90
....*....|....*....
gi 1207166876 978 LAVDVCRQVLQQHPDYPQI 996
Cdd:COG0457 94 EALEDYDKALELDPDDAEA 112
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
834-996 |
8.71e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.41 E-value: 8.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 834 QVETAVLELADTLANNVMLEECLLLMAEGFVQLKQIPRARNFLKRLtrMNWSDTNADYMekgcLLLADMYIKMGKYTEGR 913
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL--LERDPDRAEAL----LELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 914 TLLHRCTQHNKSCSKAYEYEGFMLENEQRYRDAALQYELAWRHSRQPAVGY----------------------------- 964
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYcelaelyleqgdydeaiealekalkldpd 176
|
170 180 190
....*....|....*....|....*....|....*...
gi 1207166876 965 ------RLALNYLKSQNYTLAVDVCRQVLQQHPDYPQI 996
Cdd:COG2956 177 carallLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
902-991 |
1.31e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.33 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 902 MYIKMGKYTEGRTLLHRCTQHNKSCSKAYEYEGFMLENEQRYRDAALQYELAWRHSRQ-PAVGYRLALNYLKSQNYTLAV 980
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDnPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|.
gi 1207166876 981 DVCRQVLQQHP 991
Cdd:COG5010 143 AALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
903-992 |
1.46e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 903 YIKMGKYTEGRTLLHRCTQHNKSCSKAYEYEGFMLENEQRYrDAALQYELAWR-HSRQPAVGYRLALNYLKSQNYTLAVD 981
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY-DEAIALEKALKlDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 1207166876 982 VCRQVLQQHPD 992
Cdd:COG3063 81 YLERALELDPS 91
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
628-709 |
1.52e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 628 YYEQQKLDYCEELCVKILQLQQEHTAAA---MLLADTLYWKNQKEEAVKIYTSIMKRNPDNFH---AMAKFLQILRRMGK 701
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPdalYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
....*...
gi 1207166876 702 LEDAVSVF 709
Cdd:COG1729 83 YDKARATL 90
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
645-749 |
2.06e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.15 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 645 LQLQQEHTAAAMLLADTLYWKNQKEEAVKIYTSIMKRNPDNFHAMAKFLQILRRMGKLEDAVSVFNACEKFNPltlREAG 724
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDP---DDAE 77
|
90 100
....*....|....*....|....*
gi 1207166876 725 YQYCKGLYLWHSHQTSSSLTHLNKA 749
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKA 102
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
128-258 |
2.68e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 128 KAKTCIKKMLKISETSPEGLIMKGWIVLtsdLEENRPQAIQYFNSGVR-DPGNLFGLMGKIEFFMLKQNESSALDIIHQI 206
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYL---RLGRYDEALAAYEKALRlDPDNADALLDLAEALLAAGDTEEAEELLERA 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1207166876 207 LLIYPDFTPALLMKMKIFMALQDYEQTEDIAHRVLERDAQDLKALQMLTVIA 258
Cdd:COG4235 78 LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
129-382 |
2.70e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.61 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 129 AKTCIKKMLKISETSPEGLIMKGWIVLTSdleENRPQAIQYFNSGVRDPGNLFGLMGKIEFFMLKQNESSALDIIHQILL 208
Cdd:TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQ---KDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 209 IYPDFTPALLMKMKIFMALQDYEQTEDIAHRVLERDAQDLKALQMLTVIAVVKDGDT--ELVKQrlqalvsALELrEPCN 286
Cdd:TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRalEYAER-------ALKL-APNI 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 287 PSlhveitavisrlIRDQFqfnlikAQALLRSGDVKSAIQCL-NLIMKMPgfqgpsegpqssiisssERLCVFLQLSEAL 365
Cdd:TIGR02917 837 PA------------ILDTL------GWLLVEKGEADRALPLLrKAVNIAP-----------------EAAAIRYHLALAL 881
|
250
....*....|....*..
gi 1207166876 366 RLNGDQHEAAKVLEDAV 382
Cdd:TIGR02917 882 LATGRKAEARKELDKLL 898
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
854-996 |
7.05e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.22 E-value: 7.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 854 ECLLLMAEGFVQLKQIPRARNFLKRLTRMNWSDTNADYmekgclLLADMYIKMGKYTEGRTLLHRCTQHNKSCSKAYEYE 933
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALY------NLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207166876 934 GFMLENEQRYRDAALQYELAWR-HSRQPAVGYRLALNYLKSQNYTLAVDVCRQVLQQHPDYPQI 996
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALElDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
175-279 |
8.23e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 8.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 175 RDPGNLFGLMGKIEFFMLKQNESSALDIIHQILLIYPDFTPALLMKMKIFMALQDYEQTEDIAHRVLERDAQDLKALQML 254
Cdd:COG4235 12 ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91
|
90 100
....*....|....*....|....*
gi 1207166876 255 TVIAvVKDGDTELVKQRLQALVSAL 279
Cdd:COG4235 92 GLAA-FQQGDYAEAIAAWQKLLALL 115
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
903-995 |
9.39e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 9.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 903 YIKMGKYTEGRTLLHRCTQHNKSCS---KAYEYEGFMLENEQRYRDAALQYELAWR----HSRQPAVGYRLALNYLKSQN 975
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKrypdSPKAPDALLKLGLSYLELGD 82
|
90 100
....*....|....*....|
gi 1207166876 976 YTLAVDVCRQVLQQHPDYPQ 995
Cdd:COG1729 83 YDKARATLEELIKKYPDSEA 102
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
191-254 |
9.62e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.48 E-value: 9.62e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207166876 191 MLKQNESSALDIIHQILLIYPDFTPALLMKMKIFMALQDYEQTEDIAHRVLERDAQDLKALQML 254
Cdd:COG4783 15 LLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
601-688 |
9.66e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 9.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207166876 601 EKAKRHYTDALNHRPDDQ---QVLLHLAALYYEQQKLDYCEELCVKILQLQQEH--TAAAML-LADTLYWKNQKEEAVKI 674
Cdd:COG1729 10 DEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkAPDALLkLGLSYLELGDYDKARAT 89
|
90
....*....|....
gi 1207166876 675 YTSIMKRNPDNFHA 688
Cdd:COG1729 90 LEELIKKYPDSEAA 103
|
|
| |
