NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1242862604|ref|NP_001342314|]
View 

FK506-binding protein 15 isoform 2 [Mus musculus]

Protein Classification

FKBP_C and Smc domain-containing protein( domain architecture ID 13624727)

protein containing domains FKBP_C, Smc, and PHA03247

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
192-285 2.96e-28

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 425560  Cd Length: 94  Bit Score: 109.21  E-value: 2.96e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  192 AVETGDSLEVAYTGWLLQnhvlGQVFDSTANKDKPLRLKLGSGKVVKGLEDGLLGMKKGGKRLIITPSACAAGSEGVIGW 271
Cdd:pfam00254    4 KAKKGDRVTVHYTGTLED----GTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLAGP 79
                           90
                   ....*....|....
gi 1242862604  272 TQPTDSILVFEVEV 285
Cdd:pfam00254   80 VIPPNATLVFEVEL 93
Smc super family cl34174
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
556-915 9.55e-19

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 92.47  E-value: 9.55e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  556 METSMIMSNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATENtQAKVTEELAA 635
Cdd:COG1196    705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA-LAKLKEEIEE 783
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  636 ATAQVSHLQLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEE 715
Cdd:COG1196    784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  716 ELTDLRAEKTSLEKNLS----ERKKKSAQERcQAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAAAEQLTL---AQAE 788
Cdd:COG1196    864 ELEELEAEKEELEDELKeleeEKEELEEELR-ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELeeeYEDT 942
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  789 LQSQWEAKCEQLLASARD------EHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEhmQRLEKTKSQApa 862
Cdd:COG1196    943 LETELEREIERLEEEIEAlgpvnlRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR--ERFKETFDKI-- 1018
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1242862604  863 graaadpSEKVKKIMNQVFQSLRGEFELEES---YDGGTILRtIMHTIK-MVTLQLL 915
Cdd:COG1196   1019 -------NENFSEIFKELFGGGTAELELTEPddpLTAGIEIS-ARPPGKkLQSLSLL 1067
PHA03247 super family cl33720
large tegument protein UL36; Provisional
934-1119 1.41e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  934 PLRPSLEQPGPATPGMPPAPPSGETQEAPEvlpeqvvgettPLPLQALPTPENGAQTrkgePAEAEVPSEIKDSSLPPQP 1013
Cdd:PHA03247  2923 PPPPPQPQPPPPPPPRPQPPLAPTTDPAGA-----------GEPSGAVPQPWLGALV----PGRVAVPRFRVPQPAPSRE 2987
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604 1014 AGIPA-HRVLGPPTSIPPKPPGPVTMDSESEEMLAADQRTVQPNgllgeEHVREVATDGLLQGNSRRLSL-TPDPEKGEP 1091
Cdd:PHA03247  2988 APASStPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPP-----DDTEDSDADSLFDSDSERSDLeALDPLPPEP 3062
                          170       180
                   ....*....|....*....|....*....
gi 1242862604 1092 PalDPESQGGEAQPPECKQAEDVSSS-GP 1119
Cdd:PHA03247  3063 H--DPFAHEPDPATPEAGARESPSSQfGP 3089
PHA03247 super family cl33720
large tegument protein UL36; Provisional
302-495 9.18e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 9.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  302 SSRDSAAPSPIPASDSLSADPVVTPLPLPLKPGEPGlrskSNSLSEQLTVNSNPDTVKAKLISRMAKMGQPMLPILPPQ- 380
Cdd:PHA03247  2607 DPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHP----PPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQr 2682
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  381 ----------------LDSNDSETEDATVLRGAGQSLVTPSIQPSLQPAHPVLPqmASQAPQPSGSGLQTPSAALMQAvs 444
Cdd:PHA03247  2683 prrraarptvgsltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALP--AAPAPPAVPAGPATPGGPARPA-- 2758
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1242862604  445 ldSHSAVSGNAQNFQPYAGVQAYAYPQTPSVTSQLQPVRPLYPAPLSQAPH 495
Cdd:PHA03247  2759 --RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP 2807
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
192-285 2.96e-28

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 425560  Cd Length: 94  Bit Score: 109.21  E-value: 2.96e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  192 AVETGDSLEVAYTGWLLQnhvlGQVFDSTANKDKPLRLKLGSGKVVKGLEDGLLGMKKGGKRLIITPSACAAGSEGVIGW 271
Cdd:pfam00254    4 KAKKGDRVTVHYTGTLED----GTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLAGP 79
                           90
                   ....*....|....
gi 1242862604  272 TQPTDSILVFEVEV 285
Cdd:pfam00254   80 VIPPNATLVFEVEL 93
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
556-915 9.55e-19

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 92.47  E-value: 9.55e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  556 METSMIMSNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATENtQAKVTEELAA 635
Cdd:COG1196    705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA-LAKLKEEIEE 783
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  636 ATAQVSHLQLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEE 715
Cdd:COG1196    784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  716 ELTDLRAEKTSLEKNLS----ERKKKSAQERcQAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAAAEQLTL---AQAE 788
Cdd:COG1196    864 ELEELEAEKEELEDELKeleeEKEELEEELR-ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELeeeYEDT 942
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  789 LQSQWEAKCEQLLASARD------EHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEhmQRLEKTKSQApa 862
Cdd:COG1196    943 LETELEREIERLEEEIEAlgpvnlRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR--ERFKETFDKI-- 1018
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1242862604  863 graaadpSEKVKKIMNQVFQSLRGEFELEES---YDGGTILRtIMHTIK-MVTLQLL 915
Cdd:COG1196   1019 -------NENFSEIFKELFGGGTAELELTEPddpLTAGIEIS-ARPPGKkLQSLSLL 1067
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
183-289 5.61e-18

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 223619 [Multi-domain]  Cd Length: 205  Bit Score: 83.62  E-value: 5.61e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  183 QDLVAAEGPAVETGDSLEVAYTGWLLQnhvlGQVFDSTANKDKPLRLKLGsgKVVKGLEDGLLGMKKGGKRLIITPSACA 262
Cdd:COG0545    106 KVLKAGDGAAPKKGDTVTVHYTGTLID----GTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIPPELA 179
                           90       100
                   ....*....|....*....|....*..
gi 1242862604  263 AGSEGVIGwTQPTDSILVFEVEVRRVK 289
Cdd:COG0545    180 YGERGVPG-VIPPNSTLVFEVELLDVK 205
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
564-857 3.75e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 74.32  E-value: 3.75e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  564 NIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATEntqakVTEELAAATAQVSHL 643
Cdd:TIGR02168  699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  644 QLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEK--------------QSRRQLELK 709
Cdd:TIGR02168  774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLErriaaterrledleEQIEELSED 853
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  710 VTSLEEELTDLRAEKTSLEKNL---SERKKKSAQERCQAEAEMDEIR---KSHQEELDRLRQLLKKARvstdqAAAEQLT 783
Cdd:TIGR02168  854 IESLAAEIEELEELIEELESELealLNERASLEEALALLRSELEELSeelRELESKRSELRRELEELR-----EKLAQLE 928
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  784 LAQAELQSQWEAKCEQLLASAR---DEHLQQYREVCAQRDAHQQKLALLQDECLAL----QAQIAAFTEQKEHMQRLEKT 856
Cdd:TIGR02168  929 LRLEGLEVRIDNLQERLSEEYSltlEEAEALENKIEDDEEEARRRLKRLENKIKELgpvnLAAIEEYEELKERYDFLTAQ 1008

                   .
gi 1242862604  857 K 857
Cdd:TIGR02168 1009 K 1009
PRK11281 PRK11281
mechanosensitive channel MscK;
616-869 1.24e-08

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 59.54  E-value: 1.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  616 NSLQTATENTQAKVTEELAAATAQVSHLQLKMTAHQKKETE-LQLQLTDNLKETdllrghvTRLQADLSELReASEQTQT 694
Cdd:PRK11281    43 AQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEqLKQQLAQAPAKL-------RQAQAELEALK-DDNDEET 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  695 KFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSerKKKSAQERCQaeAEMDEirksHQEELDRLRQLLKKARVST 774
Cdd:PRK11281   115 RETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV--SLQTQPERAQ--AALYA----NSQRLQQIRNLLKGGKVGG 186
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  775 DQAAAEQLTLAQAELQSqWEAKCE---QLLASArdEHLQQYREvcAQRDAHQQKLALLQDECLALQAQIAA--FTEQKEH 849
Cdd:PRK11281   187 KALRPSQRVLLQAEQAL-LNAQNDlqrKSLEGN--TQLQDLLQ--KQRDYLTARIQRLEHQLQLLQEAINSkrLTLSEKT 261
                          250       260
                   ....*....|....*....|
gi 1242862604  850 MQRLEktkSQAPAGRAAADP 869
Cdd:PRK11281   262 VQEAQ---SQDEAARIQANP 278
DUF4686 pfam15742
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ...
570-862 1.42e-08

Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.


Pssm-ID: 434900 [Multi-domain]  Cd Length: 384  Bit Score: 58.15  E-value: 1.42e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  570 QENERLKQELLEKSsrieeqndKISDLIERNQRYVEQSNLMMEKRNNSLQTAT-------ENTQAKV---TEELAAATAQ 639
Cdd:pfam15742   13 EEVQQLRQDLQRLQ--------ILCTSAERELRYEREKNLDLKQHNSLLQEENikikaelKQAQQKLldsTKMCSSLTAE 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  640 VSHLQLKMtahqkKETELQLQ-LTDNLKETDLLRGhvtRLQADLSELREASEqtqtkfksekqsrrqlelKVTSLEEELT 718
Cdd:pfam15742   85 WEHCQQKI-----RELELEVLkQAQSIKSQNSLQE---KLAQEKSKVADAEK------------------KILELQQKLE 138
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  719 DLR----AEKTSLEKNLSERKKKSAQErcqAEAEMdeirKSHQEELDRLRQLLK------KARVSTDQAAAEQLTLAQAE 788
Cdd:pfam15742  139 HAHkvclTETCILEKKQLEEEIKEAQE---NEAKL----KQQYQEEQQKRKLLDqnvnelQQQVRSLQDKEAQLEMTNSQ 211
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  789 LQS---QWEAKCEQLLA--SARDEHLQQYREVcaqrdahQQKLALLQDECLALQAQIAAFTEQ-KEHMQRLEKTKSQAPA 862
Cdd:pfam15742  212 QQLriqQQEAQLKQLENekRKSDEHLKSNQEL-------SEKLSSLQQEKEALQEELQQVLKQlDVHVRKYNEKHHHHKA 284
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
190-308 3.85e-08

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 55.92  E-value: 3.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  190 GPAVETGDSLEVAYTGWLLQnhvlGQVFDSTANKDKPLRLKLGSgkVVKGLEDGLLGMKKGGKRLIITPSACAAGSEGVI 269
Cdd:PRK10902   158 GEAPKDSDTVVVNYKGTLID----GKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP 231
                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1242862604  270 GWtqPTDSILVFEVEVRRVKFARDSGSDGHSVSSRDSAA 308
Cdd:PRK10902   232 GI--PANSTLVFDVELLDVKPAPKADAKPEADAKAADSA 268
PHA03247 PHA03247
large tegument protein UL36; Provisional
934-1119 1.41e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  934 PLRPSLEQPGPATPGMPPAPPSGETQEAPEvlpeqvvgettPLPLQALPTPENGAQTrkgePAEAEVPSEIKDSSLPPQP 1013
Cdd:PHA03247  2923 PPPPPQPQPPPPPPPRPQPPLAPTTDPAGA-----------GEPSGAVPQPWLGALV----PGRVAVPRFRVPQPAPSRE 2987
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604 1014 AGIPA-HRVLGPPTSIPPKPPGPVTMDSESEEMLAADQRTVQPNgllgeEHVREVATDGLLQGNSRRLSL-TPDPEKGEP 1091
Cdd:PHA03247  2988 APASStPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPP-----DDTEDSDADSLFDSDSERSDLeALDPLPPEP 3062
                          170       180
                   ....*....|....*....|....*....
gi 1242862604 1092 PalDPESQGGEAQPPECKQAEDVSSS-GP 1119
Cdd:PHA03247  3063 H--DPFAHEPDPATPEAGARESPSSQfGP 3089
tig TIGR00115
trigger factor; Trigger factor is a ribosome-associated molecular chaperone and is the first ...
185-255 2.02e-04

trigger factor; Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome. [Protein fate, Protein folding and stabilization]


Pssm-ID: 272913 [Multi-domain]  Cd Length: 410  Bit Score: 45.24  E-value: 2.02e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1242862604  185 LVAAEGPAVETGDSLEVAYTGwllqnHVLGQVFDSTANKDkpLRLKLGSGKVVKGLEDGLLGMKKGGKRLI 255
Cdd:TIGR00115  141 LVPVERGAAEKGDRVTIDFEG-----FIDGEAFEGGKAEN--FSLELGSGQFIPGFEEQLVGMKAGEEKEI 204
PHA03247 PHA03247
large tegument protein UL36; Provisional
302-495 9.18e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 9.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  302 SSRDSAAPSPIPASDSLSADPVVTPLPLPLKPGEPGlrskSNSLSEQLTVNSNPDTVKAKLISRMAKMGQPMLPILPPQ- 380
Cdd:PHA03247  2607 DPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHP----PPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQr 2682
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  381 ----------------LDSNDSETEDATVLRGAGQSLVTPSIQPSLQPAHPVLPqmASQAPQPSGSGLQTPSAALMQAvs 444
Cdd:PHA03247  2683 prrraarptvgsltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALP--AAPAPPAVPAGPATPGGPARPA-- 2758
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1242862604  445 ldSHSAVSGNAQNFQPYAGVQAYAYPQTPSVTSQLQPVRPLYPAPLSQAPH 495
Cdd:PHA03247  2759 --RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP 2807
F-BAR_GAS7 cd07649
The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein ...
579-825 9.66e-03

The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7; F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.


Pssm-ID: 153333 [Multi-domain]  Cd Length: 233  Bit Score: 39.23  E-value: 9.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  579 LLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEK-RNNSLQTATENTQAKVTEELAAATAQVSHLQLKMTAHQKKETEL 657
Cdd:cd07649     10 LLQKQLKGKQMQKEMAEFIRERIKIEEEYAKNLSKlSQSSLAAQEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEK 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  658 QL--QLTDNLKETDLLRGHVTRLQADLSeLREASEQTQTKFKSEKQsrRQLELKVTSLEEELTDLRaektslEKNLSERK 735
Cdd:cd07649     90 PLlnFRENFKKDMKKLDHHIADLRKQLA-SRYAAVEKARKALLERQ--KDLEGKTQQLEIKLSNKT------EEDIKKAR 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  736 KKSAQercqaeaemdeirksHQEELDRLRQLLKKARvstdQAAAEQLTLAQAELQSQWEAKCEQLlasarDEHLQQYREV 815
Cdd:cd07649    161 RKSTQ---------------AGDDLMRCVDLYNQAQ----SKWFEEMVTTSLELERLEVERIEMI-----RQHLCQYTQL 216
                          250
                   ....*....|
gi 1242862604  816 CAQRDAHQQK 825
Cdd:cd07649    217 RHETDMFNQS 226
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
192-285 2.96e-28

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 425560  Cd Length: 94  Bit Score: 109.21  E-value: 2.96e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  192 AVETGDSLEVAYTGWLLQnhvlGQVFDSTANKDKPLRLKLGSGKVVKGLEDGLLGMKKGGKRLIITPSACAAGSEGVIGW 271
Cdd:pfam00254    4 KAKKGDRVTVHYTGTLED----GTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLAGP 79
                           90
                   ....*....|....
gi 1242862604  272 TQPTDSILVFEVEV 285
Cdd:pfam00254   80 VIPPNATLVFEVEL 93
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
556-915 9.55e-19

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 92.47  E-value: 9.55e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  556 METSMIMSNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATENtQAKVTEELAA 635
Cdd:COG1196    705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA-LAKLKEEIEE 783
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  636 ATAQVSHLQLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEE 715
Cdd:COG1196    784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  716 ELTDLRAEKTSLEKNLS----ERKKKSAQERcQAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAAAEQLTL---AQAE 788
Cdd:COG1196    864 ELEELEAEKEELEDELKeleeEKEELEEELR-ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELeeeYEDT 942
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  789 LQSQWEAKCEQLLASARD------EHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEhmQRLEKTKSQApa 862
Cdd:COG1196    943 LETELEREIERLEEEIEAlgpvnlRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR--ERFKETFDKI-- 1018
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1242862604  863 graaadpSEKVKKIMNQVFQSLRGEFELEES---YDGGTILRtIMHTIK-MVTLQLL 915
Cdd:COG1196   1019 -------NENFSEIFKELFGGGTAELELTEPddpLTAGIEIS-ARPPGKkLQSLSLL 1067
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
183-289 5.61e-18

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 223619 [Multi-domain]  Cd Length: 205  Bit Score: 83.62  E-value: 5.61e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  183 QDLVAAEGPAVETGDSLEVAYTGWLLQnhvlGQVFDSTANKDKPLRLKLGsgKVVKGLEDGLLGMKKGGKRLIITPSACA 262
Cdd:COG0545    106 KVLKAGDGAAPKKGDTVTVHYTGTLID----GTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIPPELA 179
                           90       100
                   ....*....|....*....|....*..
gi 1242862604  263 AGSEGVIGwTQPTDSILVFEVEVRRVK 289
Cdd:COG0545    180 YGERGVPG-VIPPNSTLVFEVELLDVK 205
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
562-859 6.08e-15

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 80.14  E-value: 6.08e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  562 MSNIQRIiQENERLKQELLEkssRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQT---ATENTQAKVTEELAAATA 638
Cdd:COG1196    178 ERKLERT-EENLERLEDLLE---ELEKQLEKLERQAEKAERYQELKAELRELELALLLAklkELRKELEELEEELSRLEE 253
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  639 QVSHLQLKMtahQKKETELQlQLTDNLKEtdlLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELT 718
Cdd:COG1196    254 ELEELQEEL---EEAEKEIE-ELKSELEE---LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE 326
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  719 DLRAEKTSLEKNLSERKKKSAQERcQAEAEMDEIRKSHQEELDRLRQLL--KKARVSTDQAAAE-QLTLAQAELQSQweA 795
Cdd:COG1196    327 ELKEKIEALKEELEERETLLEELE-QLLAELEEAKEELEEKLSALLEELeeLFEALREELAELEaELAEIRNELEEL--K 403
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1242862604  796 KCEQLLASARDEHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEHMQ-RLEKTKSQ 859
Cdd:COG1196    404 REIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRdRLKELERE 468
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
564-857 3.75e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 74.32  E-value: 3.75e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  564 NIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATEntqakVTEELAAATAQVSHL 643
Cdd:TIGR02168  699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  644 QLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEK--------------QSRRQLELK 709
Cdd:TIGR02168  774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLErriaaterrledleEQIEELSED 853
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  710 VTSLEEELTDLRAEKTSLEKNL---SERKKKSAQERCQAEAEMDEIR---KSHQEELDRLRQLLKKARvstdqAAAEQLT 783
Cdd:TIGR02168  854 IESLAAEIEELEELIEELESELealLNERASLEEALALLRSELEELSeelRELESKRSELRRELEELR-----EKLAQLE 928
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  784 LAQAELQSQWEAKCEQLLASAR---DEHLQQYREVCAQRDAHQQKLALLQDECLAL----QAQIAAFTEQKEHMQRLEKT 856
Cdd:TIGR02168  929 LRLEGLEVRIDNLQERLSEEYSltlEEAEALENKIEDDEEEARRRLKRLENKIKELgpvnLAAIEEYEELKERYDFLTAQ 1008

                   .
gi 1242862604  857 K 857
Cdd:TIGR02168 1009 K 1009
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
531-847 4.43e-13

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 73.95  E-value: 4.43e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  531 LMTKVEELQKHSSgnsMLLPSMSV-TMETSMIMSNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNL 609
Cdd:TIGR02169  693 LQSELRRIENRLD---ELSQELSDaSRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  610 MMEKRNNsLQTATENTQA--------KVTEELAAATAQVSHLQLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQAD 681
Cdd:TIGR02169  770 LEEDLHK-LEEALNDLEArlshsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  682 LSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKsaqeRCQAEAEMDEIRKsHQEELD 761
Cdd:TIGR02169  849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK----IEELEAQIEKKRK-RLSELK 923
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  762 RLRQLLKKARVSTDQAAAEQLTLAQAELQ-SQWEAKCEQLLASARD------EHLQQYREVCAQRDAHQQKLALLQDECL 834
Cdd:TIGR02169  924 AKLEALEEELSEIEDPKGEDEEIPEEELSlEDVQAELQRVEEEIRAlepvnmLAIQEYEEVLKRLDELKEKRAKLEEERK 1003
                          330
                   ....*....|...
gi 1242862604  835 ALQAQIAAFTEQK 847
Cdd:TIGR02169 1004 AILERIEEYEKKK 1016
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
561-856 1.44e-12

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 72.44  E-value: 1.44e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  561 IMSNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQsnlmmekrnnslQTATENTQAKVTEELAAATAQV 640
Cdd:COG1196    244 LEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE------------LLELKEEIEELEGEISLLRERL 311
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  641 SHLQLKMTAHQKKETELQLQLTD---NLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSrrqlelKVTSLEEEL 717
Cdd:COG1196    312 EELENELEELEERLEELKEKIEAlkeELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE------LFEALREEL 385
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  718 TDLRAEKTSLEKNLSErkkksaqercqAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAAAEQLTLAQAELQsqwEAKC 797
Cdd:COG1196    386 AELEAELAEIRNELEE-----------LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEE---LEEL 451
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1242862604  798 EQLLASARDEHLQQYREVCAQRDAHQQKLALLQD---ECLALQAQIAAFTEQKEHMQRLEKT 856
Cdd:COG1196    452 EEQLEELRDRLKELERELAELQEELQRLEKELSSleaRLDRLEAEQRASQGVRAVLEALESG 513
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
576-860 2.26e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 71.63  E-value: 2.26e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  576 KQELLEKSSRIEEQNDKISDLIERnqryveqsnlmMEKRNNSLQTatentQAKVTEELAAATAQVSHLQL-----KMTAH 650
Cdd:TIGR02168  174 RKETERKLERTRENLDRLEDILNE-----------LERQLKSLER-----QAEKAERYKELKAELRELELallvlRLEEL 237
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  651 QKKETELQLQLTDNLKETDLLRGHVTRLQADLSELR-------EASEQTQTKFKS--------------EKQSRRQLELK 709
Cdd:TIGR02168  238 REELEELQEELKEAEEELEELTAELQELEEKLEELRlevseleEEIEELQKELYAlaneisrleqqkqiLRERLANLERQ 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  710 VTSLEEELTDLRAEKTSLEKNLSERKKK--SAQERCQAEAEMDEIRKSHQEELDRLRQLLKKA--RVSTDQAAAE-QLTL 784
Cdd:TIGR02168  318 LEELEAQLEELESKLDELAEELAELEEKleELKEELESLEAELEELEAELEELESRLEELEEQleTLRSKVAQLElQIAS 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  785 AQAELQSQwEAKCEQLlaSARDEHLQQYRE------VCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEHMQRLEKTKS 858
Cdd:TIGR02168  398 LNNEIERL-EARLERL--EDRRERLQQEIEellkklEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

                   ..
gi 1242862604  859 QA 860
Cdd:TIGR02168  475 QA 476
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
570-854 2.94e-12

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 71.28  E-value: 2.94e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  570 QENERLKQELLEKSSRIEEQNDKISDL-IERNQRYVEQSNLmmekrnnslqtatENTQAKVTEELAAATAQVSHLQLKMT 648
Cdd:COG1196    660 RSSLAQKRELKELEEELAELEAQLEKLeEELKSLKNELRSL-------------EDLLEELRRQLEELERQLEELKRELA 726
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  649 AHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEK-------QSRRQLELKVTSLEEELTDLR 721
Cdd:COG1196    727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKeeieeleEKRQALQEELEELEEELEEAE 806
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  722 AEKTSLEKNLSerKKKSAQERCQAE-AEMDEIRKSHQEELDRLRQLLKKARVSTDQaAAEQLTLAQAELQSqweakceql 800
Cdd:COG1196    807 RRLDALERELE--SLEQRRERLEQEiEELEEEIEELEEKLDELEEELEELEKELEE-LKEELEELEAEKEE--------- 874
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1242862604  801 lasaRDEHLQQYREVCAQRDAHQQKLALLQDEC-LALQAQIAAFTEQKEHMQRLE 854
Cdd:COG1196    875 ----LEDELKELEEEKEELEEELRELESELAELkEEIEKLRERLEELEAKLERLE 925
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
651-895 1.98e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 68.54  E-value: 1.98e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  651 QKKETELQL--------QLTDNLKEtdlLRGHVTRLQA-------------------------DLSELREASEQTQTKFK 697
Cdd:TIGR02168  173 RRKETERKLertrenldRLEDILNE---LERQLKSLERqaekaerykelkaelrelelallvlRLEELREELEELQEELK 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  698 SEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKK-----SAQERCQAEAEMDEIRKSH----QEELDRLRQLLK 768
Cdd:TIGR02168  250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyalaNEISRLEQQKQILRERLANlerqLEELEAQLEELE 329
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  769 KARVsTDQAAAEQLTLAQAELQSQWEAKCEQL--LASARDEHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQ 846
Cdd:TIGR02168  330 SKLD-ELAEELAELEEKLEELKEELESLEAELeeLEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|
gi 1242862604  847 KEHMQ-RLEKTKSQAPAGRAAADPSEKvKKIMNQVFQSLRGEFELEESYD 895
Cdd:TIGR02168  409 LERLEdRRERLQQEIEELLKKLEEAEL-KELQAELEELEEELEELQEELE 457
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
566-788 1.68e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 65.47  E-value: 1.68e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  566 QRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKrnnslqtaTENTQAKVTEELAAATAQVSHLQL 645
Cdd:TIGR02169  272 QLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELED--------AEERLAKLEAEIDKLLAEIEELER 343
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  646 KMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTK---FKSEKQS-----------RRQLELKVT 711
Cdd:TIGR02169  344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKlekLKREINElkreldrlqeeLQRLSEELA 423
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  712 SLEEELTDLRAEKTSLE---KNLSERKKKSAQERCQAEAEMDEIRKSH---QEELDRLRQLLKKARVSTDQAAAEQLTLA 785
Cdd:TIGR02169  424 DLNAAIAGIEAKINELEeekEDKALEIKKQEWKLEQLAADLSKYEQELydlKEEYDRVEKELSKLQRELAEAEAQARASE 503

                   ...
gi 1242862604  786 QAE 788
Cdd:TIGR02169  504 ERV 506
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
559-914 3.27e-10

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 64.40  E-value: 3.27e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  559 SMIMSNIQRIIQENERLKQELLEKSSRIEEQndkISDLIERNQRYVEQSNLMMEKRNNSLQTATENtqakvteELAAATA 638
Cdd:COG0419    170 EKLSELLKEVIKEAKAKIEELEGQLSELLED---IEDLLEALEEELKELKKLEEIQEEQEEEELEQ-------EIEALEE 239
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  639 QVSHLQLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLElKVTSLEEELT 718
Cdd:COG0419    240 RLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE-GLRALLEELE 318
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  719 DLRAEKtsleKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQLLKKARvsTDQAAAEQLTLAQAELQSQWEAKCE 798
Cdd:COG0419    319 ELLEKL----KSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELE--ERLEELEKELEKALERLKQLEEAIQ 392
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  799 QLLaSARDEHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEHmQRLEKTKSQAPAGRAAADPS-------E 871
Cdd:COG0419    393 ELK-EELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ-LESKELMIAELAGAGEKCPVcgqelpeE 470
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|...
gi 1242862604  872 KVKKIMNQVFQSLRgefELEESYDGGTILRTIMHTIKMVTLQL 914
Cdd:COG0419    471 HEKELLELYELELE---ELEEELSREKEEAELREEIEELEKEL 510
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
571-903 5.73e-10

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 63.63  E-value: 5.73e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  571 ENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLmmEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKMTah 650
Cdd:COG0419    468 PEEHEKELLELYELELEELEEELSREKEEAELREEIEEL--EKELRELEEELIELLELEEALKEELEEKLEKLENLLE-- 543
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  651 QKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQ------TQTKFKSEKQSRRQLELKVTSLEEELTDLRAEK 724
Cdd:COG0419    544 ELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRkeeleeLRERLKELKKKLKELEERLSQLEELLQSLELSE 623
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  725 TSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQLLKKARvstdqaaaeqltlAQAELQSQWEAKCEQLLasa 804
Cdd:COG0419    624 AENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEI-------------RRELQRIENEEQLEEKL--- 687
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  805 rdEHLQQYREVCAQRdahQQKLALLQDECLALQAQIAAFTEQKEHMQRLEK-TKSQAPAGRAAADPSEKVKKIMNQ--VF 881
Cdd:COG0419    688 --EELEQLEEELEQL---REELEELLKKLGEIEQLIEELESRKAELEELKKeLEKLEKALELLEELREKLGKAGLRadIL 762
                          330       340
                   ....*....|....*....|....*...
gi 1242862604  882 QSLRGEFELEES------YDGGTILRTI 903
Cdd:COG0419    763 RNLLAQIEAEANeilsklSLNRYDLRRL 790
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
561-776 6.58e-10

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 63.50  E-value: 6.58e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  561 IMSNIQRIIQENERLKQELLEkssrIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTaTENTQAKVTEELAAATAQV 640
Cdd:TIGR04523  202 LLSNLKKKIQKNKSLESQISE----LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQ-LKDEQNKIKKQLSEKQKEL 276
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  641 --SHLQLKMTAHQKKETELQLQLTDNLKETDLLRghvtRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELT 718
Cdd:TIGR04523  277 eqNNKKIKELEKQLNQLKSEISDLNNQKEQDWNK----ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELT 352
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1242862604  719 DLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDrLRQLLKKARVSTDQ 776
Cdd:TIGR04523  353 NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIND-LESKIQNQEKLNQQ 409
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
507-768 8.96e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 63.15  E-value: 8.96e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  507 MTEARQHNTEIRMAVNKVADKMDHLMTKVEELQKHSSGNSMLLPSMSvtMETSMIMSNIQRIIQENERLKQELLEKSSRI 586
Cdd:TIGR02168  686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR--KDLARLEAEVEQLEERIAQLSKELTELEAEI 763
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  587 EEQNDKISDL------IERNQRYVEQSNLMMEKRNNSLQTATENTQAKVT------------------------------ 630
Cdd:TIGR02168  764 EELEERLEEAeeelaeAEAEIEELEAQIEQLKEELKALREALDELRAELTllneeaanlrerleslerriaaterrledl 843
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  631 -EELAAATAQVSHLQLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELK 709
Cdd:TIGR02168  844 eEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1242862604  710 VTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQLLK 768
Cdd:TIGR02168  924 LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
515-789 1.71e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 62.38  E-value: 1.71e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  515 TEIRMAVNKVADKMDHLMTKVEELQKhssgnsmllpsmsvtmETSMIMSNIQRIIQENERLKQELLEKSSRIEEQNDKIS 594
Cdd:TIGR02168  270 EELRLEVSELEEEIEELQKELYALAN----------------EISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  595 DLIERNQRyveqsnlmMEKRNNSLQTATENTQAKVTE---ELAAATAQVSHLQLKMTAHQKKETELQLQLTDNLKETDLL 671
Cdd:TIGR02168  334 ELAEELAE--------LEEKLEELKEELESLEAELEEleaELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  672 RGHVTRLQADLSELREasEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEknlsERKKKSAQERCQAEAEMDE 751
Cdd:TIGR02168  406 EARLERLEDRRERLQQ--EIEELLKKLEEAELKELQAELEELEEELEELQEELERLE----EALEELREELEEAEQALDA 479
                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1242862604  752 IRKSHQEELDRLRQLLK-KARVSTDQAAAEQLTLAQAEL 789
Cdd:TIGR02168  480 AERELAQLQARLDSLERlQENLEGFSEGVKALLKNQSGL 518
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
516-859 2.39e-09

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 61.70  E-value: 2.39e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  516 EIRMAVNKVADKMDHLMTKVEELQKHSSGNSMLLpsmsvtmeTSMIMSNIQRIIQENE----RLKQELLEKSSRIEEQND 591
Cdd:COG0419    168 KYEKLSELLKEVIKEAKAKIEELEGQLSELLEDI--------EDLLEALEEELKELKKleeiQEEQEEEELEQEIEALEE 239
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  592 KISDLIERNQRYVEQSNLMMEKRNNSLQTAteNTQAKVTEELAAATAQVSHLQLKMTAHQK---KETELQLQLTDNLKET 668
Cdd:COG0419    240 RLAELEEEKERLEELKARLLEIESLELEAL--KIREEELRELERLLEELEEKIERLEELEReieELEEELEGLRALLEEL 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  669 DLLRGHVTRLQADLSELREASE----------QTQTKFKSEKQSR-RQLELKVTSLEEELTDLRAEKTSLEKNLSERKKK 737
Cdd:COG0419    318 EELLEKLKSLEERLEKLEEKLEkleseleelaEEKNELAKLLEERlKELEERLEELEKELEKALERLKQLEEAIQELKEE 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  738 SAQ-----------------ERCQAEAEMDEIRKSH---QEELDRLRQLLKKARVST-----------------DQAAAE 780
Cdd:COG0419    398 LAElsaaleeiqeeleelekELEELERELEELEEEIkklEEQINQLESKELMIAELAgagekcpvcgqelpeehEKELLE 477
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  781 QLTLAQAELQSQW-EAKCEQLLASARDEHLQQYREVCAQRDAHQQKLALLQDEclaLQAQIAAFTEQKEHMQRL-EKTKS 858
Cdd:COG0419    478 LYELELEELEEELsREKEEAELREEIEELEKELRELEEELIELLELEEALKEE---LEEKLEKLENLLEELEELkEKLQL 554

                   .
gi 1242862604  859 Q 859
Cdd:COG0419    555 Q 555
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
512-758 6.46e-09

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 60.03  E-value: 6.46e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  512 QHNTEIRMAVNKVADKMDHLMTKVEELQKHSSGnsmllpsmsVTMETSMIMSNIQRIIQENERLKQELLEKSSRIEEQND 591
Cdd:TIGR04523  211 QKNKSLESQISELKKQNNQLKDNIEKKQQEINE---------KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNK 281
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  592 KISDLIER-NQRYVEQSNLMMEKRnnslqtatENTQAKVTEELaaataqvshlqlkmTAHQKKETELQLQLTDNLKETDL 670
Cdd:TIGR04523  282 KIKELEKQlNQLKSEISDLNNQKE--------QDWNKELKSEL--------------KNQEKKLEEIQNQISQNNKIISQ 339
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  671 LRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQ---AEA 747
Cdd:TIGR04523  340 LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQikkLQQ 419
                          250
                   ....*....|.
gi 1242862604  748 EMDEIRKSHQE 758
Cdd:TIGR04523  420 EKELLEKEIER 430
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
563-941 9.78e-09

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 59.77  E-value: 9.78e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  563 SNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIER-NQRYVEQSNLMMEKRNN--SLQTATENTQAKVT--------- 630
Cdd:COG0419    315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEkNELAKLLEERLKELEERleELEKELEKALERLKqleeaiqel 394
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  631 -EELAAATAQVSHLQLKMTAHQKKETELQ---LQLTDNLKETDLLRGHVTRLQADLSELREASEQ-----TQTKFKSEKQ 701
Cdd:COG0419    395 kEELAELSAALEEIQEELEELEKELEELErelEELEEEIKKLEEQINQLESKELMIAELAGAGEKcpvcgQELPEEHEKE 474
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  702 SRRQLELKVTSLEEELTdLRAEKTSLEKNLSERKKK---SAQERCQAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAA 778
Cdd:COG0419    475 LLELYELELEELEEELS-REKEEAELREEIEELEKElreLEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQ 553
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  779 AEQLtlaQAELQSqweakCEQLLASARDEhLQQYREVCAQrdahQQKLALLQDECLALQAQIAAFTEQKEHMQRLEKTKS 858
Cdd:COG0419    554 LQQL---KEELRQ-----LEDRLQELKEL-LEELRLLRTR----KEELEELRERLKELKKKLKELEERLSQLEELLQSLE 620
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  859 QAPAGRAAADPSEKVKKIMNQVfqSLRGEFELEESYDGGTILRTIMHTIKMVtlQLLNHQEEEEEEEEEEEEEKKPLRPS 938
Cdd:COG0419    621 LSEAENELEEAEEELESELEKL--NLQAELEELLQAALEELEEKVEELEAEI--RRELQRIENEEQLEEKLEELEQLEEE 696

                   ...
gi 1242862604  939 LEQ 941
Cdd:COG0419    697 LEQ 699
PRK11281 PRK11281
mechanosensitive channel MscK;
616-869 1.24e-08

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 59.54  E-value: 1.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  616 NSLQTATENTQAKVTEELAAATAQVSHLQLKMTAHQKKETE-LQLQLTDNLKETdllrghvTRLQADLSELReASEQTQT 694
Cdd:PRK11281    43 AQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEqLKQQLAQAPAKL-------RQAQAELEALK-DDNDEET 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  695 KFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSerKKKSAQERCQaeAEMDEirksHQEELDRLRQLLKKARVST 774
Cdd:PRK11281   115 RETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV--SLQTQPERAQ--AALYA----NSQRLQQIRNLLKGGKVGG 186
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  775 DQAAAEQLTLAQAELQSqWEAKCE---QLLASArdEHLQQYREvcAQRDAHQQKLALLQDECLALQAQIAA--FTEQKEH 849
Cdd:PRK11281   187 KALRPSQRVLLQAEQAL-LNAQNDlqrKSLEGN--TQLQDLLQ--KQRDYLTARIQRLEHQLQLLQEAINSkrLTLSEKT 261
                          250       260
                   ....*....|....*....|
gi 1242862604  850 MQRLEktkSQAPAGRAAADP 869
Cdd:PRK11281   262 VQEAQ---SQDEAARIQANP 278
DUF4686 pfam15742
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ...
570-862 1.42e-08

Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.


Pssm-ID: 434900 [Multi-domain]  Cd Length: 384  Bit Score: 58.15  E-value: 1.42e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  570 QENERLKQELLEKSsrieeqndKISDLIERNQRYVEQSNLMMEKRNNSLQTAT-------ENTQAKV---TEELAAATAQ 639
Cdd:pfam15742   13 EEVQQLRQDLQRLQ--------ILCTSAERELRYEREKNLDLKQHNSLLQEENikikaelKQAQQKLldsTKMCSSLTAE 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  640 VSHLQLKMtahqkKETELQLQ-LTDNLKETDLLRGhvtRLQADLSELREASEqtqtkfksekqsrrqlelKVTSLEEELT 718
Cdd:pfam15742   85 WEHCQQKI-----RELELEVLkQAQSIKSQNSLQE---KLAQEKSKVADAEK------------------KILELQQKLE 138
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  719 DLR----AEKTSLEKNLSERKKKSAQErcqAEAEMdeirKSHQEELDRLRQLLK------KARVSTDQAAAEQLTLAQAE 788
Cdd:pfam15742  139 HAHkvclTETCILEKKQLEEEIKEAQE---NEAKL----KQQYQEEQQKRKLLDqnvnelQQQVRSLQDKEAQLEMTNSQ 211
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  789 LQS---QWEAKCEQLLA--SARDEHLQQYREVcaqrdahQQKLALLQDECLALQAQIAAFTEQ-KEHMQRLEKTKSQAPA 862
Cdd:pfam15742  212 QQLriqQQEAQLKQLENekRKSDEHLKSNQEL-------SEKLSSLQQEKEALQEELQQVLKQlDVHVRKYNEKHHHHKA 284
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
566-819 2.58e-08

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 58.21  E-value: 2.58e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  566 QRIIQENERLKQELlEKSSRIEEQNDKISDLIERNQR-YVEQSNLMMEkRNNSL------QTATENTQAKvTEELAAATA 638
Cdd:pfam17380  299 ERLRQEKEEKAREV-ERRRKLEEAEKARQAEMDRQAAiYAEQERMAME-RERELerirqeERKRELERIR-QEEIAMEIS 375
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  639 QVSHLQ-LKMTAHQKK----------------ETELQLQLTDNLKETDLLRGHVTRL-QADLSELREASEQTQTKFKSEK 700
Cdd:pfam17380  376 RMRELErLQMERQQKNervrqeleaarkvkilEEERQRKIQQQKVEMEQIRAEQEEArQREVRRLEEERAREMERVRLEE 455
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  701 QSRRQlelKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEElDRLRQLLKKARVSTDQAAAE 780
Cdd:pfam17380  456 QERQQ---QVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEE-ERKRKLLEKEMEERQKAIYE 531
                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1242862604  781 QLTLAQAELQSQWEAKCEQllasaRDEHLQQYREVCAQR 819
Cdd:pfam17380  532 EERRREAEEERRKQQEMEE-----RRRIQEQMRKATEER 565
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
518-859 3.13e-08

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 58.06  E-value: 3.13e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  518 RMAVNKVADKMDHLMTKVEELQKHSSGNSMLLPSMSVTMETSM--IMSNIQRIIQENERLKQELLEKSSRIEEQNDKISD 595
Cdd:TIGR00618  179 TQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKqvLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKK 258
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  596 LIERNQRYVEQSNLMMEKRNNSLQTATENTQAKVtEELAAATAQVSHLQLKMtahQKKETELQLQLTDNLKEtdllRGHV 675
Cdd:TIGR00618  259 QQLLKQLRARIEELRAQEAVLEETQERINRARKA-APLAAHIKAVTQIEQQA---QRIHTELQSKMRSRAKL----LMKR 330
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  676 TRLQADLSELREASEQTQTKFKSEKQSRRQlelkvtslEEELTDLRAEKtSLEKNLSERKKKSAQERCQAEaemdEIRKS 755
Cdd:TIGR00618  331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDA--------HEVATSIREIS-CQQHTLTQHIHTLQQQKTTLT----QKLQS 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  756 HQEELDRLRQLLKKARVSTDQAAAEQLTLAQAELQSQWEAKCEQLLASARDEHLQQYRevcaQRDAHQQKLALLQDECLA 835
Cdd:TIGR00618  398 LCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEK----LEKIHLQESAQSLKEREQ 473
                          330       340
                   ....*....|....*....|....*....
gi 1242862604  836 LQAQIAAFTEQ-----KEHMQRLEKTKSQ 859
Cdd:TIGR00618  474 QLQTKEQIHLQetrkkAVVLARLLELQEE 502
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
563-798 3.53e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 57.77  E-value: 3.53e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  563 SNIQRIIQENErlkQELLEKSSRIEEQNDKISDLIERnQRYVEQSNLMMEKRNNSLqTATENTQAKVTEELAAATAQVSH 642
Cdd:PRK03918   189 ENIEELIKEKE---KELEEVLREINEISSELPELREE-LEKLEKEVKELEELKEEI-EELEKELESLEGSKRKLEEKIRE 263
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  643 LQlKMTAHQKKETElqlQLTDNLKETDLLRGHVTRLQAdLSELREaseqtqtKFKSEKqsrRQLELKVTSLEEELTDLRA 722
Cdd:PRK03918   264 LE-ERIEELKKEIE---ELEEKVKELKELKEKAEEYIK-LSEFYE-------EYLDEL---REIEKRLSRLEEEINGIEE 328
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1242862604  723 EKTSLEKnLSERKKKSAQERCQAEAEMDEIRKSHqEELDRLRQLLKKARVSTDQAAAEQLTLAQAELQSQWEAKCE 798
Cdd:PRK03918   329 RIKELEE-KEERLEELKKKLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE 402
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
190-308 3.85e-08

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 55.92  E-value: 3.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  190 GPAVETGDSLEVAYTGWLLQnhvlGQVFDSTANKDKPLRLKLGSgkVVKGLEDGLLGMKKGGKRLIITPSACAAGSEGVI 269
Cdd:PRK10902   158 GEAPKDSDTVVVNYKGTLID----GKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP 231
                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1242862604  270 GWtqPTDSILVFEVEVRRVKFARDSGSDGHSVSSRDSAA 308
Cdd:PRK10902   232 GI--PANSTLVFDVELLDVKPAPKADAKPEADAKAADSA 268
PTZ00121 PTZ00121
MAEBL; Provisional
573-788 8.69e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.07  E-value: 8.69e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  573 ERLKQELLEKSSRIEEQNDKisdliernqRYVEQSNLMMEKRNNSLQTATENTQAKvtEELAAATAQVSHLQLKMTAHQK 652
Cdd:PTZ00121  1544 EKKKADELKKAEELKKAEEK---------KKAEEAKKAEEDKNMALRKAEEAKKAE--EARIEEVMKLYEEEKKMKAEEA 1612
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  653 KETELQLQLTDNLKETDLLRGHVTRLQADLSE-------LREASEQT-----QTKFKSEKQSRRQLELKVTSLEEELTDL 720
Cdd:PTZ00121  1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEekkkaeeLKKAEEENkikaaEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1242862604  721 RAEKTSLEKNLSER-KKKSAQERCQAEaemdEIRKSHQEELDRLRQLLKKARvsTDQAAAEQLTLAQAE 788
Cdd:PTZ00121  1693 ALKKEAEEAKKAEElKKKEAEEKKKAE----ELKKAEEENKIKAEEAKKEAE--EDKKKAEEAKKDEEE 1755
PTZ00121 PTZ00121
MAEBL; Provisional
571-874 9.53e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 56.69  E-value: 9.53e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  571 ENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATENTQA---KVTEELAAATAQVSHLQLKM 647
Cdd:PTZ00121  1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAaekKKEEAKKKADAAKKKAEEKK 1391
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  648 TAHQ-KKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEqtqTKFKSEkQSRRQLELKVTSlEEELTDLRAEKTS 726
Cdd:PTZ00121  1392 KADEaKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE---AKKKAE-EAKKADEAKKKA-EEAKKAEEAKKKA 1466
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  727 LEKNLSERKKKSAQERCQAE--AEMDEIRKSHQEELDRLRQLLKKA---RVSTDQAAAEQLTLAQAELQSQWEAKCEQLL 801
Cdd:PTZ00121  1467 EEAKKADEAKKKAEEAKKADeaKKKAEEAKKKADEAKKAAEAKKKAdeaKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1242862604  802 ASARDEHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQK--EHMQRLEKTKSQAPAGRAAADPSEKVK 874
Cdd:PTZ00121  1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAriEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
666-893 1.46e-07

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 55.42  E-value: 1.46e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  666 KETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKsaQERCQA 745
Cdd:COG4372    123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR--SAQIEQ 200
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  746 EAEMDEIRKSHQEELDRLRQLLKKARVSTDQAAAEQLTLAQAELQSqweakceqllASARDEHLQQyREVCAQRdaHQQK 825
Cdd:COG4372    201 EAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQ----------IAARAEQIRE-RERQLQR--LETA 267
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  826 LALLQDECLALQAQIAAFTEQKEHMQRLEKTKSQAPAGRAAADpSEKVKKIMNQVFQSLR--GEFELEES 893
Cdd:COG4372    268 QARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQ-AQAQAQAQAQLLSSANrpAALRLRRS 336
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
569-830 1.46e-07

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 55.42  E-value: 1.46e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  569 IQENERLKQELLEKSSRIEEQNDkisdlIERNQRYVEQSNLMMEKRNNSLQTATENTQ-AKVTEELAAATAQVSHLQ--L 645
Cdd:COG4372     79 IRPQLRALRTELGTAQGEKRAAE-----TEREAARSELQKARQEREAVRQELAAARQNlAKAQQELARLTKQAQDLQtrL 153
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  646 KMTAHQKKETELQLQLTDNlkETDLLRGHVTRLQADLSELREASEQTQTKFKsEKQSRRQlelKVTSLEEELTDLRAEKT 725
Cdd:COG4372    154 KTLAEQRRQLEAQAQSLQA--SQKQLQASATQLKSQVLDLKLRSAQIEQEAQ-NLATRAN---AAQARTEELARRAAAAQ 227
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  726 SLEKNLSERKKKsAQERCQAEAEMDEIRKSHQEELDRLRQllKKARVSTDQAAAEQLTLAQAELQSQWEAKCE-QLLASA 804
Cdd:COG4372    228 QTAQAIQQRDAQ-ISQKAQQIAARAEQIRERERQLQRLET--AQARLEQEVAQLEAYYQAYVRLRQQAAATQRgQVLAGA 304
                          250       260
                   ....*....|....*....|....*...
gi 1242862604  805 --RDEHLQQYREVCAQRDAHQQKLALLQ 830
Cdd:COG4372    305 aqRVAQAQAQAQAQAQLLSSANRPAALR 332
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
679-895 1.68e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 55.83  E-value: 1.68e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  679 QADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKK--KSAQERCQAEAEMDEIRKSH 756
Cdd:TIGR02168  676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKdlARLEAEVEQLEERIAQLSKE 755
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  757 QEELDRLRQLLKKARVSTDQAAAE------QLTLAQAELQSQWEAKCEQlLASARDEHLQQYREVCAQR---DAHQQKLA 827
Cdd:TIGR02168  756 LTELEAEIEELEERLEEAEEELAEaeaeieELEAQIEQLKEELKALREA-LDELRAELTLLNEEAANLRerlESLERRIA 834
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1242862604  828 LLQDECLALQAQIAaftEQKEHMQRLEktKSQAPAGRAAADPSEKVKKIMNQVFQSLRGEFELEESYD 895
Cdd:TIGR02168  835 ATERRLEDLEEQIE---ELSEDIESLA--AEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
570-860 2.05e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 55.43  E-value: 2.05e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  570 QENERLKQELLEKSSRIEEQNDKISDLIERNQryveqsnlmmEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKMTA 649
Cdd:PRK02224   251 EELETLEAEIEDLRETIAETEREREELAEEVR----------DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELE 320
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  650 HQKKET-----ELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRaek 724
Cdd:PRK02224   321 DRDEELrdrleECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELR--- 397
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  725 tsleknlsERKKKSAQERCQAEAEMDEIRkshqEELDRLRQLLKKARVSTdQAAAEQLTLAQAELQSQWEAKCEQLLA-S 803
Cdd:PRK02224   398 --------ERFGDAPVDLGNAEDFLEELR----EERDELREREAELEATL-RTARERVEEAEALLEAGKCPECGQPVEgS 464
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1242862604  804 ARDEHLQQYREvcaQRDAHQQKLALLQDECLALQAQIAAFTEQKEHMQRLEKTKSQA 860
Cdd:PRK02224   465 PHVETIEEDRE---RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERR 518
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
567-832 4.41e-07

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 54.40  E-value: 4.41e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  567 RIIQENERLKQELLEKSSRIEEQNDK--------------ISDLIERNQRYvEQSNLMMEKRNNSLQTATENTQakvtEE 632
Cdd:pfam01576  149 KLQKERKLLEERISEFTSNLAEEEEKskslnklknkheamISDLEDRLKKE-EKGRQELEKAKRKLEGESSDLQ----EQ 223
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  633 LAAATAQVSHLQLKMtahQKKETELQLQLTDNLKET---DLLRGHVTRLQADLSELREASEQT-QTKFKSEKQsRRQLEL 708
Cdd:pfam01576  224 IAELQAQIAELRAQL---AKKEEELQAALARLEEETaqkNAALKKLRELEAQLSELQEDLESErAARAKAEKQ-RRDLGE 299
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  709 KVTSLEEELTD----------LRAEKtslEKNLSERKKKSAQERCQAEAEMDEIRKSH-------QEELD---RLRQLLK 768
Cdd:pfam01576  300 ELEALKTELEDtldttaaqqeLRSKR---EQEVTELKKALEEETRSHEAQLQEMRQKHtqaleelTEQLEqakRNKASLE 376
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1242862604  769 KARVS----TDQAAAEQLTLAQAELQS-QWEAKCEQLLAsardEHLQQYREVCAQRDAHQQKLALLQDE 832
Cdd:pfam01576  377 KAKQAleseNAELQAELRSLQQAKQDSeHKRKKLEGQLQ----ELQSRLSESERQRAELAEKLSKLQSE 441
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
570-768 6.45e-07

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 54.01  E-value: 6.45e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  570 QENERLKQELLEKSSRIEEQNDKISDLIERnqryVEQSNLMMEKRNNSLQTATENTQAKVTEElaaaTAQVSHLQLKMTA 649
Cdd:pfam01576  422 SESERQRAELAEKLSKLQSELESVSSLLNE----AEGKNIKLSKDVSSLESQLQDTQELLQEE----TRQKLNLSSRLRQ 493
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  650 HQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELR----------EASEQTQTKFKSEKQSRRQ-----------LEL 708
Cdd:pfam01576  494 LEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKkkleedagavEALEEGRKRLQRELEALTQrleekaaaydkLEK 573
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  709 KVTSLEEELTDL-------RAEKTSLEKN-------LSERKKKSAQ---ERCQAEAEMDEIR-------------KSHQE 758
Cdd:pfam01576  574 TKNRLQQELDDLlvdldhqRQLVSNLEKKqkkfdqmLAEEKAISARyaeERDRAEAEAREKEtkalslaraleeaLDAKE 653
                          250
                   ....*....|
gi 1242862604  759 ELDRLRQLLK 768
Cdd:pfam01576  654 ELERQNKQLR 663
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
506-894 6.54e-07

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 53.57  E-value: 6.54e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  506 LMTEARQHNTEIRMAVNKVADKMDHLMTKVE-ELQKHSSGNSMLLPSMSvtmETSMIMSNIQRIIQENeRLKQELLEKSS 584
Cdd:pfam05483  202 LRVQAENARLEMHFKLKEDHEKIQHLEEEYKkEINDKEKQVSLLLIQIT---EKENKMKDLTFLLEES-RDKANQLEEKT 277
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  585 RIEEQNDKisDLIERNQRYVEQsnlmMEKRNNSLQTATeNTQAKVTEELAAAT-----------AQVSHLQLKMTAHQKK 653
Cdd:pfam05483  278 KLQDENLK--ELIEKKDHLTKE----LEDIKMSLQRSM-STQKALEEDLQIATkticqlteekeAQMEELNKAKAAHSFV 350
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  654 ETELQlQLTDNLKEtdLLRGHVTRLQADLSEL--------REASE-QTQTKFKSEKQSRRQlELKVTSLEEEltDLRAEK 724
Cdd:pfam05483  351 VTEFE-ATTCSLEE--LLRTEQQRLEKNEDQLkiitmelqKKSSElEEMTKFKNNKEVELE-ELKKILAEDE--KLLDEK 424
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  725 TSLEKnLSERKKKSAQERC---QA--------EAEMDEIRKSHQ---EELDRLRQLLKKARVSTDQ--AAAEQLTLAQAE 788
Cdd:pfam05483  425 KQFEK-IAEELKGKEQELIfllQArekeihdlEIQLTAIKTSEEhylKEVEDLKTELEKEKLKNIEltAHCDKLLLENKE 503
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  789 LQSQWEAKCEQLLASARD--EHLQQYREVCAQRDAHQQKLALLQDEclaLQAQIAAFTEQKEHMQ-RLEKTKSQAPAGRA 865
Cdd:pfam05483  504 LTQEASDMTLELKKHQEDiiNCKKQEERMLKQIENLEEKEMNLRDE---LESVREEFIQKGDEVKcKLDKSEENARSIEY 580
                          410       420
                   ....*....|....*....|....*....
gi 1242862604  866 AADPSEKVKKIMNQVFQSLRGEFELEESY 894
Cdd:pfam05483  581 EVLKKEKQMKILENKCNNLKKQIENKNKN 609
PRK11281 PRK11281
mechanosensitive channel MscK;
564-790 8.12e-07

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 53.38  E-value: 8.12e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  564 NIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERN-----QRYVEQSNLMMEKRNNSLQTATENTQakvtEELAAATA 638
Cdd:PRK11281    74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNdeetrETLSTLSLRQLESRLAQTLDQLQNAQ----NDLAEYNS 149
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  639 QVSHLQLK-------MTAHQKKETELQLQLTDNLKETDLLRG-HVTRLQADLS------ELREASEQTQTKFKSEKQSRR 704
Cdd:PRK11281   150 QLVSLQTQperaqaaLYANSQRLQQIRNLLKGGKVGGKALRPsQRVLLQAEQAllnaqnDLQRKSLEGNTQLQDLLQKQR 229
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  705 QL-ELKVTSLEEELTDLRAEKTslEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAAaeqlT 783
Cdd:PRK11281   230 DYlTARIQRLEHQLQLLQEAIN--SKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLN----T 303

                   ....*..
gi 1242862604  784 LAQAELQ 790
Cdd:PRK11281   304 LTQQNLR 310
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
527-860 8.91e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 53.57  E-value: 8.91e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  527 KMDHLMTKVEELQKHSSgnsmllpsMSVTMETSMIMsnIQRIIQEnerlkqeLLEKSSRIEEQNDKISDL---IERNQRY 603
Cdd:pfam15921  449 QMAAIQGKNESLEKVSS--------LTAQLESTKEM--LRKVVEE-------LTAKKMTLESSERTVSDLtasLQEKERA 511
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  604 VEQSNLMMEKRNNSLQTATENTQAKVTEE--LAAATAQVSHLQLKMtAHQKKETELQLQLTDNLkeTDLLRGH---VTRL 678
Cdd:pfam15921  512 IEATNAEITKLRSRVDLKLQELQHLKNEGdhLRNVQTECEALKLQM-AEKDKVIEILRQQIENM--TQLVGQHgrtAGAM 588
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  679 QADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSER---KKKSAQERCQAeaeMDEIRKS 755
Cdd:pfam15921  589 QVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERlraVKDIKQERDQL---LNEVKTS 665
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  756 HQE--ELDRLRQLLKKarvsTDQAAAEQLTLAQAELQSQweakceqlLASARDEhLQQYREVCAQ---RDAHQQKLAL-L 829
Cdd:pfam15921  666 RNElnSLSEDYEVLKR----NFRNKSEEMETTTNKLKMQ--------LKSAQSE-LEQTRNTLKSmegSDGHAMKVAMgM 732
                          330       340       350
                   ....*....|....*....|....*....|.
gi 1242862604  830 QDECLALQAQIAAFTEQkehMQRLEKTKSQA 860
Cdd:pfam15921  733 QKQITAKRGQIDALQSK---IQFLEEAMTNA 760
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
623-769 1.14e-06

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 51.21  E-value: 1.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  623 ENTQAKVTEELAAATAQVSHLQLKMTAHQKKETELQLQLTDNLK-------ETDLLRGHVTRLQADLSELREASEQTQTK 695
Cdd:COG1579      2 MNNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKalealeiELEDLENQVSQLESEIQEIRERIKRAEEK 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  696 FKSEKQSRR---------QLELKVTSLEEELTDLRAEKTSLEKNL-SERKKKSAQERC------QAEAEMDEIRKSHQEE 759
Cdd:COG1579     82 LSAVKDERElralnieiqIAKERINSLEDELAELMEEIEKLEKEIeDLKERLERLEKNlaeaeaRLEEEVAEIREEGQEL 161
                          170
                   ....*....|
gi 1242862604  760 LDRLRQLLKK 769
Cdd:COG1579    162 SSKREELKEK 171
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
563-888 1.34e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 52.76  E-value: 1.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  563 SNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRY--------------VEQSNLMMEKRNNSLQTAtENTQAK 628
Cdd:PRK03918   324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYeeakakkeelerlkKRLTGLTPEKLEKELEEL-EKAKEE 402
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  629 VTEELAAATAQVSHL------------QLK------------MTAHQKKE-------------------TELQLQLTDNL 665
Cdd:PRK03918   403 IEEEISKITARIGELkkeikelkkaieELKkakgkcpvcgreLTEEHRKElleeytaelkriekelkeiEEKERKLRKEL 482
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  666 KETDLLRGHVTRLQA------------------DLSELREASEQTQT-------------KFKSEKQSRRQLELKVTSLE 714
Cdd:PRK03918   483 RELEKVLKKESELIKlkelaeqlkeleeklkkyNLEELEKKAEEYEKlkekliklkgeikSLKKELEKLEELKKKLAELE 562
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  715 EELTDLRAEKTSLEKNLSERKKKSAQErcqAEAEMDEIRKSHQE---------ELDRLRQLLKKARVSTDQAAAEqLTLA 785
Cdd:PRK03918   563 KKLDELEEELAELLKELEELGFESVEE---LEERLKELEPFYNEylelkdaekELEREEKELKKLEEELDKAFEE-LAET 638
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  786 QAELQSQwEAKCEQLLASARDEhlqQYREVcaqrdahQQKLALLQDECLALQAQIAAFTEQKEHMQR-LEKTKSQAPAGR 864
Cdd:PRK03918   639 EKRLEEL-RKELEELEKKYSEE---EYEEL-------REEYLELSRELAGLRAELEELEKRREEIKKtLEKLKEELEERE 707
                          410       420
                   ....*....|....*....|....
gi 1242862604  865 AAADPSEKVKKIMNQVfQSLRGEF 888
Cdd:PRK03918   708 KAKKELEKLEKALERV-EELREKV 730
SlpA COG1047
FKBP-type peptidyl-prolyl cis-trans isomerase 2 [Posttranslational modification, protein ...
192-253 1.37e-06

FKBP-type peptidyl-prolyl cis-trans isomerase 2 [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 223976  Cd Length: 174  Bit Score: 49.56  E-value: 1.37e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1242862604  192 AVETGDSLEVAYTGWLLQnhvlGQVFDSTANKDKPLRLKLGSGKVVKGLEDGLLGMKKGGKR 253
Cdd:COG1047      2 KIEKGDVVSLHYTLKVED----GEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEF 59
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
651-941 2.00e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 52.38  E-value: 2.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  651 QKKETELQLQLTDNLKETDLLRGHVTRLQadlSELREASEQTqtkfkSEKQSRRQ-LELKVTSLEEELTDL--------- 720
Cdd:TIGR02169  680 RERLEGLKRELSSLQSELRRIENRLDELS---QELSDASRKI-----GEIEKEIEqLEQEEEKLKERLEELeedlssleq 751
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  721 -----RAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAAAEqltlAQAELQSqwEA 795
Cdd:TIGR02169  752 eienvKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE----IEQKLNR--LT 825
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  796 KCEQLLASARDEHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAaftEQKEHMQRLEKTKSqapagraaaDPSEKVKK 875
Cdd:TIGR02169  826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE---ELEAALRDLESRLG---------DLKKERDE 893
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1242862604  876 IMNQVFQSLRGEFELEESYDggtILRTIMHTIKmVTLQLLNHQEEEEEEEEEEEEEKKPLRPSLEQ 941
Cdd:TIGR02169  894 LEAQLRELERKIEELEAQIE---KKRKRLSELK-AKLEALEEELSEIEDPKGEDEEIPEEELSLED 955
MscS_porin pfam12795
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part ...
649-842 2.21e-06

Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux.


Pssm-ID: 432790 [Multi-domain]  Cd Length: 238  Bit Score: 50.38  E-value: 2.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  649 AHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSElreaseqtQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLE 728
Cdd:pfam12795   34 ASKQRAAAYQKALDDAPAELRELRQELAALQAKAEA--------APKEILASLSLEELEQRLLQTSAQLQELQNQLAQLN 105
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  729 KNLSERKKKSAQercqAEAEMDEIRKshqeELDRLRQLLKKARVSTDQAAAEQLTLAQAELQSQW----EAKCEQLLASA 804
Cdd:pfam12795  106 SQLIELQTRPER----AQQQLSEARQ----RLQQIRNRLNGPAPPGEPLSEAQRWALQAELAALKaqidMLEQELLSNNN 177
                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1242862604  805 RDEHLQqyrevcAQRDAHQQKLALLQDECLALQAQIAA 842
Cdd:pfam12795  178 RQDLLK------ARRDLLTLRIQRLEQQLQALQELLNE 209
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
627-859 2.25e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 51.99  E-value: 2.25e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  627 AKVTEELAAATAQVSHLQLKmtahqkkETELQLQLtDNLKETdllRGHVTRLQADLSELR--EASEQTQTKFKSEKQsRR 704
Cdd:TIGR02169  173 EKALEELEEVEENIERLDLI-------IDEKRQQL-ERLRRE---REKAERYQALLKEKReyEGYELLKEKEALERQ-KE 240
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  705 QLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRL----RQLLKKARVSTDQA--A 778
Cdd:TIGR02169  241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELeaeiASLERSIAEKERELedA 320
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  779 AEQLTLAQAELQSQwEAKCEQLlasarDEHLQQYRevcAQRDAHQQKLALLQDECLALQAQI--------AAFTEQKEHM 850
Cdd:TIGR02169  321 EERLAKLEAEIDKL-LAEIEEL-----EREIEEER---KRRDKLTEEYAELKEELEDLRAELeevdkefaETRDELKDYR 391

                   ....*....
gi 1242862604  851 QRLEKTKSQ 859
Cdd:TIGR02169  392 EKLEKLKRE 400
Macoilin pfam09726
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ...
624-847 2.41e-06

Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.


Pssm-ID: 430778 [Multi-domain]  Cd Length: 670  Bit Score: 51.78  E-value: 2.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  624 NTQAKVTEELAAATAQVSHLQLKMTAHQKKETELQLQLtdnlketDLLRGHVTRLQADLSELREASEQTQTKFKS----- 698
Cdd:pfam09726  388 NNQLSKPDALVRLEQDIKKLKAELQASRQTEQELRSQI-------SSLTSLERSLKSELGQLRQENDLLQTKLHNavsak 460
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  699 --EKQSRRQLELKvtsLEEEltdlRAEKTSLEKNLSERKK-------KSAQERCQAEA---EMDEIRKSHQEELD-RLRQ 765
Cdd:pfam09726  461 qkDKQTVQQLEKR---LKAE----QEARASAEKQLAEEKKrkkeeeaTAARAVALAAAsrgECTESLKQRKRELEsEIKK 533
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  766 LLKKARVSTDQAAaeqltlaqaelqsQWEAKCEQllasardehLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTE 845
Cdd:pfam09726  534 LTHDIKLKEEQIR-------------ELEIKVQE---------LRKYKESEKDTEVLMSALSAMQDKNQHLENSLSAETR 591

                   ..
gi 1242862604  846 QK 847
Cdd:pfam09726  592 IK 593
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
574-894 3.37e-06

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 51.51  E-value: 3.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  574 RLKQELLEKSsriEEQNDKISDLIERNQryVEQSNLMMEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKMtahQKK 653
Cdd:TIGR00618  153 EFAQFLKAKS---KEKKELLMNLFPLDQ--YTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERK---QVL 224
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  654 ETELQlQLTDNLKETDllrghvtRLQADLSELREASEQTQTKFKSEKQSRRQLElKVTSLEEELtdlraEKTSLEKNLSE 733
Cdd:TIGR00618  225 EKELK-HLREALQQTQ-------QSHAYLTQKREAQEEQLKKQQLLKQLRARIE-ELRAQEAVL-----EETQERINRAR 290
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  734 RKKKSAQErcqaEAEMDEIRKSHQEELDRLRQ---LLKKARVSTDQAAAEQLTL-AQAELQSQWEAKCEQLlasaRDEHL 809
Cdd:TIGR00618  291 KAAPLAAH----IKAVTQIEQQAQRIHTELQSkmrSRAKLLMKRAAHVKQQSSIeEQRRLLQTLHSQEIHI----RDAHE 362
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  810 QQyrevCAQRDAHQQKLALLQdECLALQAQIAAFTEQkehMQRLEKTKSQAPAGRAAADPSEKVKKIMNQVFQSLRGEFE 889
Cdd:TIGR00618  363 VA----TSIREISCQQHTLTQ-HIHTLQQQKTTLTQK---LQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQE 434

                   ....*
gi 1242862604  890 LEESY 894
Cdd:TIGR00618  435 LQQRY 439
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
563-753 3.80e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 51.17  E-value: 3.80e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  563 SNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERN----------QRYVEQSNLMMEKRNNSLQTATENTQAKVTE- 631
Cdd:TIGR04523  412 EQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDsvkeliiknlDNTRESLETQLKVLSRSINKIKQNLEQKQKEl 491
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  632 -----ELAAATAQVSHL------------QLKMTAHQ------KKETELQlQLTDNLKETD------LLRGHVTRLQADL 682
Cdd:TIGR04523  492 kskekELKKLNEEKKELeekvkdltkkisSLKEKIEKlesekkEKESKIS-DLEDELNKDDfelkkeNLEKEIDEKNKEI 570
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  683 SELRE---ASEQTQTKFK-------SEKQS-RRQLELK---VTSLEEELTDLRAEKTSLE---KNLSERKKKSAQERCQA 745
Cdd:TIGR04523  571 EELKQtqkSLKKKQEEKQelidqkeKEKKDlIKEIEEKekkISSLEKELEKAKKENEKLSsiiKNIKSKKNKLKQEVKQI 650

                   ....*...
gi 1242862604  746 EAEMDEIR 753
Cdd:TIGR04523  651 KETIKEIR 658
DUF812 pfam05667
Protein of unknown function (DUF812); This family consists of several eukaryotic proteins of ...
571-852 4.03e-06

Protein of unknown function (DUF812); This family consists of several eukaryotic proteins of unknown function.


Pssm-ID: 428574 [Multi-domain]  Cd Length: 601  Bit Score: 51.17  E-value: 4.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  571 ENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKMTAH 650
Cdd:pfam05667  223 EEEWNSQGLASRLTPEEYRKRKRTKLLKRIAEQLRSAALASTEATSGASRSKQDLAELLSSFGGSSTTDTNLTKGSRFTH 302
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  651 QKKET----ELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTS 726
Cdd:pfam05667  303 TEKLQftneEAPAATSSPPTKAETEEELQQQREEELEELQEQLEELESSIEELEKEIKKLESSIKQVEEELEELKEQNEE 382
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  727 LEKNLsERKKKSAQERCQAEAEMDEirkshqeeldrLRQLLkkarvstdQAAAEQLtlaqAELQSQWEAKCEQLLasard 806
Cdd:pfam05667  383 LEKQY-KVKKKTLDLLPDAEENIAK-----------LQALV--------EASAQRL----VELAGQWEKHRVPLI----- 433
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|
gi 1242862604  807 EHLQQYREVCAQR-DAHQQKLA---LLQDECLalqaQIAAFTEQKEHMQR 852
Cdd:pfam05667  434 EEYRALKEAKSNKeSESQRKLEeikELREKIK----EVAEEARSKEELYK 479
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
495-853 4.97e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 50.87  E-value: 4.97e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  495 HFQGSGDMMSFLMteaRQHNTEIRMAVNKVADKMDHLmtkvEELQKHSSGNSMLLPSMSvtmetsmiMSNIQRIIQENER 574
Cdd:pfam15921  214 HFRSLGSAISKIL---RELDTEISYLKGRIFPVEDQL----EALKSESQNKIELLLQQH--------QDRIEQLISEHEV 278
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  575 LKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKMTAHQKKE 654
Cdd:pfam15921  279 EITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSEL 358
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  655 TELQLQLTDNLKETDLLRGHVTRLQADL----SELREASEQTQTKFKSEKQS-------RRQLE---LKVTSLEEELTDL 720
Cdd:pfam15921  359 TEARTERDQFSQESGNLDDQLQKLLADLhkreKELSLEKEQNKRLWDRDTGNsitidhlRRELDdrnMEVQRLEALLKAM 438
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  721 RAE-KTSLEKNLS--ERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQllKKARVSTDQAAAEQLTLAQAELQSQWEAKC 797
Cdd:pfam15921  439 KSEcQGQMERQMAaiQGKNESLEKVSSLTAQLESTKEMLRKVVEELTA--KKMTLESSERTVSDLTASLQEKERAIEATN 516
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1242862604  798 EQL--LASARDEHLQQYREVCAQRDAHQQklalLQDECLALQAQIAA-------FTEQKEHMQRL 853
Cdd:pfam15921  517 AEItkLRSRVDLKLQELQHLKNEGDHLRN----VQTECEALKLQMAEkdkvieiLRQQIENMTQL 577
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
516-737 6.99e-06

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 224259 [Multi-domain]  Cd Length: 294  Bit Score: 49.29  E-value: 6.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  516 EIRMAVNKVADKMDHLMTKVEELQKHSSGNSMLLPSmsvtmetsmIMSnIQRIIQENERLKQEL---LEKSSRIEEQNDK 592
Cdd:COG1340     73 ELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRS---------IKS-LEREIERLEKKQQTSvltPEEERELVQKIKE 142
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  593 ISDLIERNQRyveqsnlmMEKRNNSLQtateNTQAKVTEELAAAtaqvSHLQLKMTAHQKKETELQLQLTDNLKETDLLR 672
Cdd:COG1340    143 LRKELEDAKK--------ALEENEKLK----ELKAEIDELKKKA----REIHEKIQELANEAQEYHEEMIKLFEEADELR 206
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1242862604  673 GHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDL--RAEKTSLEKNLSERKKK 737
Cdd:COG1340    207 KEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAkrREKREELKERAEEIYEK 273
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
557-793 7.01e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 49.72  E-value: 7.01e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  557 ETSMIMSNIQRIIQENERLKQELLEKSSRIEEQNDKISDliernqryveqsnlmMEKRNNSLQTATENTQAKVTEELAAA 636
Cdd:COG4942     60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD---------------LNARLNALEVQEREQRRRLAEQLAAL 124
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  637 TAQVSH--LQLKMTAHQKKETEL-----------QLQLTDNLKETdllRGHVTRLQADLSELREASEQTQTKFKSE---- 699
Cdd:COG4942    125 QRSGRNppPALLVSPEDAQRSVRlaiyygalnpaRAERIDALKAT---LKQLAAVRAEIAAEQAELTTLLSEQRAQqakl 201
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  700 -------KQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQlLKKARV 772
Cdd:COG4942    202 aqlleerKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGE-TYKPTA 280
                          250       260
                   ....*....|....*....|.
gi 1242862604  773 STDQAAAEQLTLAQAELQSQW 793
Cdd:COG4942    281 PEKMLISSTGGFGALRGQLAW 301
mukB PRK04863
chromosome partition protein MukB;
573-871 1.25e-05

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 49.57  E-value: 1.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  573 ERLKQELLEkssrIEEQNDKISDLIERNQRYVEQSNLMMekrNNSLQTATENTQAkvtEELAAATAQVSHLQLKMTAHQK 652
Cdd:PRK04863   789 EQLRAEREE----LAERYATLSFDVQKLQRLHQAFSRFI---GSHLAVAFEADPE---AELRQLNRRRVELERALADHES 858
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  653 KETELQLQLtDNLKET-DLLRGHVTR--------LQADLSELREASEQTQTKFKSEKQSRRQLELkvtsLEEELTDLRAE 723
Cdd:PRK04863   859 QEQQQRSQL-EQAKEGlSALNRLLPRlnlladetLADRVEEIREQLDEAEEAKRFVQQHGNALAQ----LEPIVSVLQSD 933
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  724 ktsleknlserkkksaqercqaEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAA---------AEQLTLAQAELQSQWE 794
Cdd:PRK04863   934 ----------------------PEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQrrahfsyedAAEMLAKNSDLNEKLR 991
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  795 AKCEQlLASARDEHLQQYREVCAQrdaHQQKLALLQDeclaLQAQIAAFTEQ-KEHMQRLEKTKSQAPAG---RAAADPS 870
Cdd:PRK04863   992 QRLEQ-AEQERTRAREQLRQAQAQ---LAQYNQVLAS----LKSSYDAKRQMlQELKQELQDLGVPADSGaeeRARARRD 1063

                   .
gi 1242862604  871 E 871
Cdd:PRK04863  1064 E 1064
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
528-852 1.28e-05

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 49.11  E-value: 1.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  528 MDHLMTKVEELQKHSSGNSMLLPSMSVTMetsmimsnIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQS 607
Cdd:pfam07888    3 LDELVTLEEESHGEEGGTDMLLVVPRAEL--------LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQ 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  608 NLMMEKRNNSLQTATENTQAKVTE------ELAAATAQVSHLQLKMTAHQKKETELQLQLTDNLKetdLLRGHVTRLQAD 681
Cdd:pfam07888   75 RRELESRVAELKEELRQSREKVEEleekykELSRSGEELAEEKDALLAQRAESEARIRELEEDIK---TLTQRVLERETE 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  682 LSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELD 761
Cdd:pfam07888  152 LERMKERVKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAE 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  762 rLRQLLKKARVSTDQAAAEQLTLA----------------QAEL-QSQWEAKCEQLLASARDEHLQQYREVCAQ-RDAHQ 823
Cdd:pfam07888  232 -NEALLEELRSLQERLNASERKVEglgeelssmaaqrdrtQAELhQARLQAAQLTLQLADASLALREGRARWAQeRETLQ 310
                          330       340       350
                   ....*....|....*....|....*....|.
gi 1242862604  824 QKLALLQDECLALQAQIAAFTE--QKEHMQR 852
Cdd:pfam07888  311 QSAEADKDRIEKLSAELQRLEErlQEERMER 341
PTZ00121 PTZ00121
MAEBL; Provisional
571-875 2.14e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.98  E-value: 2.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  571 ENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATEntqAKVTEELAAATAQVSHLQLKMTAH 650
Cdd:PTZ00121  1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE---AKKADEAKKAEEKKKADELKKAEE 1556
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  651 QKKETELQLQLTDNLKETDllRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKvtslEEELTDLRAEKtsLEKN 730
Cdd:PTZ00121  1557 LKKAEEKKKAEEAKKAEED--KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK----KAEEAKIKAEE--LKKA 1628
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  731 LSERKKKSAQERCQAEA--EMDEIRKSHQEELDRLRQLLKKARvsTDQAAAEQLTLAQAELQSQWEAKCEQLLASARDEH 808
Cdd:PTZ00121  1629 EEEKKKVEQLKKKEAEEkkKAEELKKAEEENKIKAAEEAKKAE--EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1242862604  809 LQQYREVcAQRDAHQQKLAllqDECLALQAQIAAFTEQKEHMQRLEKTKSQAPAGRAAADPSEKVKK 875
Cdd:PTZ00121  1707 LKKKEAE-EKKKAEELKKA---EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
568-830 2.89e-05

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 48.30  E-value: 2.89e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  568 IIQENERLKQELLEkSSRIEEQNDKIS---DLIERNQRYVEQSNLMMEKRNNSLQTATENTQAKVTEELAAATAQVSHLQ 644
Cdd:COG4717    538 ITDELPELAVDLLV-QSRIRQHWQQLRkalDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDIL 616
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  645 LKMTAH---QKKETELQLQLTDNLKETDLLRGHVTRL----QADLSELREASEQTQTKFKSEKQS---RRQLELKVTSLE 714
Cdd:COG4717    617 STMKDLkklMQKKAELTHQVARLREEQAAFEERVEGLlavlEAQFIDLSTLFCVQRLRVAAELQKeeaRLALEGNIERTK 696
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  715 EELTDLRAEktsLEKNlseRKKKSAQERCQAEAEMDEIRKSHQEElDRLRQLLKKARVSTDQ---AAAEQLTLAQAELQS 791
Cdd:COG4717    697 ELNDELRAE---LELH---RKEILDLFDCGTADTEDAFREAAREE-QQLTQRESRLESLEAQlegVAAEAYELSASLDQR 769
                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1242862604  792 QWEAKCEQLLASARDEHLQQYREVCAQRDAHQQKLALLQ 830
Cdd:COG4717    770 ELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808
Ax_dynein_light pfam10211
Axonemal dynein light chain; Axonemal dynein light chain proteins play a dynamic role in ...
705-769 3.01e-05

Axonemal dynein light chain; Axonemal dynein light chain proteins play a dynamic role in flagellar and cilia motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains.


Pssm-ID: 431138 [Multi-domain]  Cd Length: 187  Bit Score: 46.03  E-value: 3.01e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1242862604  705 QLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLR---QLLKK 769
Cdd:pfam10211  116 QAEQGKSELEKKIADLEEEKEELEKQVAELKAKCEAIEKREEERRQAEEKKHAEEIAFLKktnQQLKA 183
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
557-855 3.18e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 48.43  E-value: 3.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  557 ETSMIMSNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLqTATENTQAKVTEELAAA 636
Cdd:TIGR00618  571 SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRL-HLQQCSQELALKLTALH 649
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  637 TAQVSHLQLKMTAHQKKETELQLQLTD-NLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEE 715
Cdd:TIGR00618  650 ALQLTLTQERVREHALSIRVLPKELLAsRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSS 729
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  716 ELTDLRAEKTSLEKNLSERKKKsAQERCQAEAEMDEiRKSHQE-----ELDRLRQLLKKARVSTDQAAAEQLTLAQAELQ 790
Cdd:TIGR00618  730 LGSDLAAREDALNQSLKELMHQ-ARTVLKARTEAHF-NNNEEVtaalqTGAELSHLAAEIQFFNRLREEDTHLLKTLEAE 807
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1242862604  791 SQWEAKCEQLLASARDEHLQQYREVCAQRDA------HQQKLALLQD-ECLALQAQiaAFTEQKEHMQRLEK 855
Cdd:TIGR00618  808 IGQEIPSDEDILNLQCETLVQEEEQFLSRLEeksatlGEITHQLLKYeECSKQLAQ--LTQEQAKIIQLSDK 877
PRK04778 PRK04778
septation ring formation regulator EzrA; Provisional
669-860 3.45e-05

septation ring formation regulator EzrA; Provisional


Pssm-ID: 179877 [Multi-domain]  Cd Length: 569  Bit Score: 47.91  E-value: 3.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  669 DLLRGHVTRLQADLSELREASEQTQTKFKSE----KQSRRQLE-----LKVTSLEEELTDLRAEKTSLEKNLSERKKKSA 739
Cdd:PRK04778   201 DQLEEELAALEQIMEEIPELLKELQTELPDQlqelKAGYRELVeegyhLDHLDIEKEIQDLKEQIDENLALLEELDLDEA 280
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  740 QERCQA-EAEMDEI----------RKSHQEELDRLRQLLKKARVSTDQAAAE--------QLTLAQAELQSQWEAKCEQL 800
Cdd:PRK04778   281 EEKNEEiQERIDQLydilerevkaRKYVEKNSDTLPDFLEHAKEQNKELKEEidrvkqsyTLNESELESVRQLEKQLESL 360
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1242862604  801 LAsardehlqQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQ----KEHMQRLEKTKSQA 860
Cdd:PRK04778   361 EK--------QYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEqeklSEMLQGLRKDELEA 416
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
566-793 3.61e-05

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 48.13  E-value: 3.61e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  566 QRIIQENERLkqelLEKSSRIEEQNDK---ISDLIerNQRYVEQSnlmmEKRNnSLQTATENTQAKVTEELAAATAQVSH 642
Cdd:PRK10929   109 QEILQVSSQL----LEKSRQAQQEQDRareISDSL--SQLPQQQT----EARR-QLNEIERRLQTLGTPNTPLAQAQLTA 177
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  643 LQLKMTAHQKKETELQL-QLTDNLKE------TDLLRGHVTRLQADLSELReaseqTQTKFKSEKQSRRQLElKVTSLEE 715
Cdd:PRK10929   178 LQAESAALKALVDELELaQLSANNRQelarlrSELAKKRSQQLDAYLQALR-----NQLNSQRQREAERALE-STELLAE 251
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  716 ELTDLRAEKTS-LEKN--LSERKKKSAQercqaeaEMDEIrKSHQEeldrlrqllkkarvstdQAAAEQLTLAQA----E 788
Cdd:PRK10929   252 QSGDLPKSIVAqFKINreLSQALNQQAQ-------RMDLI-ASQQR-----------------QAASQTLQVRQAlntlR 306

                   ....*
gi 1242862604  789 LQSQW 793
Cdd:PRK10929   307 EQSQW 311
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
621-871 4.47e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 47.41  E-value: 4.47e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  621 ATENTQAkVTEELAAATAQVSHLQLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELR-EASEQTQTKFKSE 699
Cdd:COG4942     29 AAFSAAA-DDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRkQIADLNARLNALE 107
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  700 KQSRRQLELkvtsLEEELTDLR--AEKTSLEKNLSErkkKSAQERCQAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQA 777
Cdd:COG4942    108 VQEREQRRR----LAEQLAALQrsGRNPPPALLVSP---EDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEI 180
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  778 AAEQLTLAQAELQSQWEAKCEQLLASARDEHLQQYRevcAQRDAHQQKLALLQDECLALQAQIAafteqkehmqRLEKTK 857
Cdd:COG4942    181 AAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN---SELSADQKKLEELRANESRLKNEIA----------SAEAAA 247
                          250
                   ....*....|....
gi 1242862604  858 SQAPAGRAAADPSE 871
Cdd:COG4942    248 AKAREAAAAAEAAA 261
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
569-858 4.49e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 47.73  E-value: 4.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  569 IQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQsnlmmEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKMT 648
Cdd:PRK02224   470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-----EDRIERLEERREDLEELIAERRETIEEKRERAEELRE 544
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  649 AHQKKETELQLQltdnlketdllrghvtrlQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLeEELTDLRAEKTSLE 728
Cdd:PRK02224   545 RAAELEAEAEEK------------------REAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAE 605
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  729 KNLSERkkksaQERCQAEAEMDEIRKSHQEEL-DRLRQL---LKKARVSTDQAAAEQLTLAQAELqsqweakceqllasa 804
Cdd:PRK02224   606 DEIERL-----REKREALAELNDERRERLAEKrERKRELeaeFDEARIEEAREDKERAEEYLEQV--------------- 665
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1242862604  805 rDEHLQQYREvcaQRDAhqqklalLQDECLALQAQIAAFTEQKEHMQRLEKTKS 858
Cdd:PRK02224   666 -EEKLDELRE---ERDD-------LQAEIGAVENELEELEELRERREALENRVE 708
COG4487 COG4487
Uncharacterized protein, contains DUF2130 domain [Function unknown];
626-874 4.63e-05

Uncharacterized protein, contains DUF2130 domain [Function unknown];


Pssm-ID: 226889 [Multi-domain]  Cd Length: 438  Bit Score: 47.12  E-value: 4.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  626 QAKVTEELAAATAQVSHLQLKMTAHQKKE-TELQLQLtDNLKETDLLRGhvtrlQADLSELREASEQTQTKFKSEKQSRR 704
Cdd:COG4487     37 QSRILNTLEEFEKEANEKRAQYRSAKKKElSQLEEQL-INQKKEQKNLF-----NEQIKQFELALQDEIAKLEALELLNL 110
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  705 QLELKVTSLEEELTDLRAEKT-SLEKNLSERKKKSAQERCQAEAEMDEIRKShQEELDRLRQllkKARVstdQAAAEQLT 783
Cdd:COG4487    111 EKDKELELLEKELDELSKELQkQLQNTAEIIEKKRENNKNEERLKFENEKKL-EESLELERE---KFEE---QLHEANLD 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  784 LAQAELQSQWEAKCEQLlasardEHLQQYREVCAQRdahqqklalLQDEclALQAQIAAFTEQKEHMQRLEKtksqAPAG 863
Cdd:COG4487    184 LEFKENEEQRESKWAIL------KKLKRRAELGSQQ---------VQGE--ALELPNESFIRSKFPSDINEK----ADKG 242
                          250
                   ....*....|.
gi 1242862604  864 RAAADPSEKVK 874
Cdd:COG4487    243 FRGFDCLNKVP 253
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
580-811 4.67e-05

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 47.44  E-value: 4.67e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  580 LEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATENTQAKvteELAAATAQVSHLQLKmtahqKKETELQL 659
Cdd:pfam09731  201 LAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYK---ELVASERIVFQQELV-----SIFPDIIP 272
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  660 QLT-DNLKETDLLRGHVTRLQADLSELreaSEQTQTKFKSEKQsrrQLELKVTSLEEELTDLRAEktsLEKNLSE-RKKK 737
Cdd:pfam09731  273 VLKeDNLLSNDDLNSLIAHAHREIDQL---SKKLAELKKREEK---HIERALEKQKEELDKLAEE---LSARLEEvRAAD 343
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1242862604  738 SAQERCQAEAEMDEIRKSHQEEldrLRQLLKKARVSTDQAAAEQLTLAQAELQSQWEAKCEQLLASARDEHLQQ 811
Cdd:pfam09731  344 EAQLRLEFEREREEIRESYEEK---LRTELERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEERAGRLLK 414
Lebercilin pfam15619
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ...
707-855 4.74e-05

Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.


Pssm-ID: 434815 [Multi-domain]  Cd Length: 193  Bit Score: 45.66  E-value: 4.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  707 ELKVTSLEEELTDL--RAEKTSLE----KNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQLLKKARvSTDQAAAE 780
Cdd:pfam15619   10 LHKIKELQNELAELqrKLEELRKEnkllKRLQRRQEKALGKYEDTESELPQLIARHNEEVRVLRERLRRSQ-EKERDLER 88
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1242862604  781 QLTLAQAELQSQwEAKCEQLLASARDEHLqqyrevcAQRDAHQQKLALLQDEclaLQaqiaaftEQKEHMQRLEK 855
Cdd:pfam15619   89 KLKEKEAELLRL-RDELKKLKKLSEDKNL-------AEREELQKKLAQLEAK---LE-------EKEEKIQELER 145
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
563-807 4.97e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 47.91  E-value: 4.97e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  563 SNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERnqryVEQSNLMMEKRNNSLQTATENTQAKVTEELAAATAQVSh 642
Cdd:pfam12128  322 SELEALEDQHGAFLDADIETAAADQEQLPSWQSELEN----LEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIK- 396
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  643 lqlKMTAHQKKETELQLQLTDNLketdllrghvtrLQADLSELREASEQTQTKFKSEKQ--SRRQLELK-----VTSLEE 715
Cdd:pfam12128  397 ---DKLAKIREARDRQLAVAEDD------------LQALESELREQLEAGKLEFNEEEYrlKSRLGELKlrlnqATATPE 461
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  716 ELTDLRAEKTSLEknlserKKKSAQERCQAEAEmdeirkSHQEELDRLRQLLKKARVSTDQA--AAEQLTLAQAELQSQW 793
Cdd:pfam12128  462 LLLQLENFDERIE------RAREEQEAANAEVE------RLQSELRQARKRRDQASEALRQAsrRLEERQSALDELELQL 529
                          250
                   ....*....|....
gi 1242862604  794 EAKCEQLLASARDE 807
Cdd:pfam12128  530 FPQAGTLLHFLRKE 543
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
569-918 5.25e-05

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 47.41  E-value: 5.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  569 IQENERLKQE----------LLEKSSRIEEQNDKIS-DLIERNQRYVEQSNLM--MEKRNNSLQTATENTQAKVTEELAA 635
Cdd:pfam05483  140 IQENKDLIKEnnatrhlcnlLKETCARSAEKTKKYEyEREETRQVYMDLNNNIekMILAFEELRVQAENARLEMHFKLKE 219
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  636 ATAQVSHLqlkmtahqkkETELQLQLTDNLKETDLLRGHVTRLQADLSEL-------REASEQTQTKFKSEKQSRRQLEL 708
Cdd:pfam05483  220 DHEKIQHL----------EEEYKKEINDKEKQVSLLLIQITEKENKMKDLtflleesRDKANQLEEKTKLQDENLKELIE 289
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  709 KVTSLEEELTDLR-------AEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQE------ELD----RLRQLLK--K 769
Cdd:pfam05483  290 KKDHLTKELEDIKmslqrsmSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAhsfvvtEFEattcSLEELLRteQ 369
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  770 ARVSTDQaaaEQLTLAQAELQSQW-------------EAKCEQLLAS-ARDEHL----QQYREVCAQRDAHQQKLALL-- 829
Cdd:pfam05483  370 QRLEKNE---DQLKIITMELQKKSseleemtkfknnkEVELEELKKIlAEDEKLldekKQFEKIAEELKGKEQELIFLlq 446
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  830 --QDECLALQAQIAAFTEQKEH-MQRLEKTKSQAPagraaadpSEKVKKI---MNQVFQSLRGEFELEESYDggtilrti 903
Cdd:pfam05483  447 arEKEIHDLEIQLTAIKTSEEHyLKEVEDLKTELE--------KEKLKNIeltAHCDKLLLENKELTQEASD-------- 510
                          410
                   ....*....|....*
gi 1242862604  904 mhtikmVTLQLLNHQ 918
Cdd:pfam05483  511 ------MTLELKKHQ 519
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
509-814 5.56e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 47.37  E-value: 5.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  509 EARQHNTEIRMAVNKVADKMDHLMTKVEELQK---------------------HSSGNSMllpsMSVTMETSMIMSNIQR 567
Cdd:PRK03918   395 ELEKAKEEIEEEISKITARIGELKKEIKELKKaieelkkakgkcpvcgrelteEHRKELL----EEYTAELKRIEKELKE 470
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  568 IIQENERLKQELLEKSSRIEEQ-----NDKISDLIERNQRYVEQSNLmmEKrnnsLQTATENTQaKVTEELAAATAQVSH 642
Cdd:PRK03918   471 IEEKERKLRKELRELEKVLKKEselikLKELAEQLKELEEKLKKYNL--EE----LEKKAEEYE-KLKEKLIKLKGEIKS 543
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  643 L--QLKMTAHQKKETELQLQLTDNLKE--TDLLR-------GHVTRLQADLSELREASEQ------TQTKFKSEKQSRRQ 705
Cdd:PRK03918   544 LkkELEKLEELKKKLAELEKKLDELEEelAELLKeleelgfESVEELEERLKELEPFYNEylelkdAEKELEREEKELKK 623
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  706 LELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQErcqaeaEMDEIRKSHQE---ELDRLRQLLKKARVSTDQAAA--E 780
Cdd:PRK03918   624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEE------EYEELREEYLElsrELAGLRAELEELEKRREEIKKtlE 697
                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1242862604  781 QLtlaQAELQSQWEAKCE-QLLASARDEhLQQYRE 814
Cdd:PRK03918   698 KL---KEELEEREKAKKElEKLEKALER-VEELRE 728
EzrA COG4477
Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome ...
567-772 5.58e-05

Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 226883 [Multi-domain]  Cd Length: 570  Bit Score: 47.37  E-value: 5.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  567 RIIQENERLKQELLEKS-SRIEEQNDKISDLIERNQ--RYVEQSNLMMEKRNNSLQTATENTQAK--VTEELAAATAQVS 641
Cdd:COG4477    240 DMKEEGYHLEHVNIDSRlERLKEQLVENSELLTQLEldEAEEELGLIQEKIESLYDLLEREVEAKnvVEENLPILPDYLE 319
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  642 HLQlKMTAHQKKETELqLQLTDNLKETDLlrGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLR 721
Cdd:COG4477    320 KAK-ENNEHLKEEIER-VKESYRLAETEL--GSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIE 395
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1242862604  722 AEKTSLEKNLSERKKKSAQERcqaeaemdEIRKSHQEELDRLRQLLKKARV 772
Cdd:COG4477    396 DEQEKVQEHLTSLRKDELEAR--------ENLERLKSKLHEIKRYMEKSNL 438
GAS pfam13851
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ...
646-791 7.59e-05

Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.


Pssm-ID: 433526 [Multi-domain]  Cd Length: 200  Bit Score: 44.90  E-value: 7.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  646 KMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQtqtkFKSEKQSRRQLELKVTSLEEELTDLRAEKt 725
Cdd:pfam13851   34 EIAEMKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLEN----YEKDKQSLKNLKARLKVLEKELKDLKWEH- 108
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1242862604  726 sleKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQLLKKaRVstdQAAAEQLTLAQAELQS 791
Cdd:pfam13851  109 ---EVLEQRFEKVERERDELYDKFEAAIQDVQQKTGLKNLLLEK-KL---QALGETLEKKEAQLNE 167
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
577-855 7.59e-05

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 224259 [Multi-domain]  Cd Length: 294  Bit Score: 46.21  E-value: 7.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  577 QELLEKSSRIEEQndkISDLIERNQRYVEQSNLMMEKR---NNSLQTATENTQAKVtEELAAATAQVSHLQLKMTAHQKK 653
Cdd:COG1340      9 DELELKRKQLKEE---IEELKEKRDELRKEASELAEKRdelNAKVRELREKAQELR-EERDEINEEVQELKEKRDEINAK 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  654 ETELQ---LQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQsrrqlelkvtsLEEELTDLRAEKTSLEKN 730
Cdd:COG1340     85 LQELRkeyRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERE-----------LVQKIKELRKELEDAKKA 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  731 LsERKKKSAQERCQAEAEMDEiRKSHQEELDRLRQLLkkarvstdQAAAEQLTLAQAELQsqwEAKCEqllasaRDEHLQ 810
Cdd:COG1340    154 L-EENEKLKELKAEIDELKKK-AREIHEKIQELANEA--------QEYHEEMIKLFEEAD---ELRKE------ADELHE 214
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 1242862604  811 QYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEHMQRLEK 855
Cdd:COG1340    215 EFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREK 259
COG5022 COG5022
Myosin heavy chain [General function prediction only];
521-724 9.29e-05

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 46.99  E-value: 9.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  521 VNKVADKMDHLMTKVEELQKHSSGNSML---LPSMSVTMETSM---IMSNIQRIIQ-ENERLKQELLEKSSRIEEQNDKI 593
Cdd:COG5022    894 ISSLKLVNLELESEIIELKKSLSSDLIEnleFKTELIARLKKLlnnIDLEEGPSIEyVKLPELNKLHEVESKLKETSEEY 973
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  594 SDLIERNQRYVEQSNLMMEKRNNSLQTATEntQAKVTEELAAATAQVSHLQLKMTAHQK--------KETELQLQLTDNL 665
Cdd:COG5022    974 EDLLKKSTILVREGNKANSELKNFKKELAE--LSKQYGALQESTKQLKELPVEVAELQSaskiisseSTELSILKPLQKL 1051
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1242862604  666 KETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEK 724
Cdd:COG5022   1052 KGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVK 1110
TPR_MLP1_2 pfam07926
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ...
623-729 9.80e-05

TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.


Pssm-ID: 429739 [Multi-domain]  Cd Length: 127  Bit Score: 43.38  E-value: 9.80e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  623 ENTQAKVTEELAAATAQVSHLQLKM--------TAHQKKETELQLQLTDnLKETDLLRGHVTRLQADLSELREASEQTQT 694
Cdd:pfam07926    5 QSEIKRLKEEAADAEAQLQKLQEDLekqaeiarEAQQNYERELVLHAED-IKALQALREELNELKAEIAELKAEAESAKA 83
                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1242862604  695 KFKSEKQSrrqLELKVTSLEEELTDLRAEKTSLEK 729
Cdd:pfam07926   84 ELEESEES---WEEQKKRLEKELSELEKRIEDLNE 115
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
569-802 1.08e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 46.58  E-value: 1.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  569 IQENE-RLKQELLEKSSRIEEQNDKISDLIERNQryvEQSNLMMEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKM 647
Cdd:TIGR00606  370 IQSLAtRLELDGFERGPFSERQIKNFHTLVIERQ---EDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKK 446
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  648 TAHQKKETELQL------QLTDNLKETDLLRGHVTRLQADLSELREAS--EQTQTKFKSEKQSRRQLELKVTSLEEELTD 719
Cdd:TIGR00606  447 EILEKKQEELKFvikelqQLEGSSDRILELDQELRKAERELSKAEKNSltETLKKEVKSLQNEKADLDRKLRKLDQEMEQ 526
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  720 LRAEKTSLEKNLSERKKKSaqercQAEAEMDEIRKSHQEEL--------------DRLRQLLKKARVSTDQAAAEQLTLA 785
Cdd:TIGR00606  527 LNHHTTTRTQMEMLTKDKM-----DKDEQIRKIKSRHSDELtsllgyfpnkkqleDWLHSKSKEINQTRDRLAKLNKELA 601
                          250       260
                   ....*....|....*....|..
gi 1242862604  786 QAE-----LQSQWEAKCEQLLA 802
Cdd:TIGR00606  602 SLEqnknhINNELESKEEQLSS 623
COG4913 COG4913
Uncharacterized protein, contains a C-terminal ATPase domain [Function unknown];
636-831 1.18e-04

Uncharacterized protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 227250 [Multi-domain]  Cd Length: 1104  Bit Score: 46.55  E-value: 1.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  636 ATAQVSHLQLKMTAHQKKET-ELQLQLTDNLkeTDLLRGHVTRLQA--DLSELREASEQTQTKFKSEKQSRR-------- 704
Cdd:COG4913    234 AKTAVEQFQDLEGAYEQVEDiKRQIHTLDPL--VQLKNRREKAQQSkdHANALKKALPTVGNRIKKEEQETLvrqftveq 311
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  705 -QLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAAAEQLT 783
Cdd:COG4913    312 tQAKSKVESAKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRRTISTARAGLDALVKGLGGAAPESAEELLE 391
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1242862604  784 LAQAELQSqweakCEQLLASARDEHLQQYREVCAQRDAHQQKLALLQD 831
Cdd:COG4913    392 LNNAARLT-----VDEYPAAREALESAGQRNVEDRTRAVDEFKAADQE 434
46 PHA02562
endonuclease subunit; Provisional
509-737 1.22e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 46.16  E-value: 1.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  509 EARQHNTEIRMAVNKVADKMDHLMTKVEELQKHSSGNSMLLPSMSVTMetsmiMSNIQRIIQENERLKQELLEKSSRIEE 588
Cdd:PHA02562   178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDEL-----VEEAKTIKAEIEELTDELLNLVMDIED 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  589 QNDKISDLierNQRYVEQSNLM--------MEKRNNSLQTATEN---TQAKVTEelaaATAQVSHLQLKMTA---HQKKE 654
Cdd:PHA02562   253 PSAALNKL---NTAAAKIKSKIeqfqkvikMYEKGGVCPTCTQQiseGPDRITK----IKDKLKELQHSLEKldtAIDEL 325
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  655 TELQLQLTDNLKEtdllrghVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSER 734
Cdd:PHA02562   326 EEIMDEFNEQSKK-------LLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398

                   ...
gi 1242862604  735 KKK 737
Cdd:PHA02562   399 VKE 401
PHA03247 PHA03247
large tegument protein UL36; Provisional
934-1119 1.41e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  934 PLRPSLEQPGPATPGMPPAPPSGETQEAPEvlpeqvvgettPLPLQALPTPENGAQTrkgePAEAEVPSEIKDSSLPPQP 1013
Cdd:PHA03247  2923 PPPPPQPQPPPPPPPRPQPPLAPTTDPAGA-----------GEPSGAVPQPWLGALV----PGRVAVPRFRVPQPAPSRE 2987
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604 1014 AGIPA-HRVLGPPTSIPPKPPGPVTMDSESEEMLAADQRTVQPNgllgeEHVREVATDGLLQGNSRRLSL-TPDPEKGEP 1091
Cdd:PHA03247  2988 APASStPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPP-----DDTEDSDADSLFDSDSERSDLeALDPLPPEP 3062
                          170       180
                   ....*....|....*....|....*....
gi 1242862604 1092 PalDPESQGGEAQPPECKQAEDVSSS-GP 1119
Cdd:PHA03247  3063 H--DPFAHEPDPATPEAGARESPSSQfGP 3089
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
580-768 1.81e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.83  E-value: 1.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  580 LEKSSRIEEQNDKISDLIER--------NQRYVEQ--------SNLMMEK------RNNSLQTATENTQA---------K 628
Cdd:PRK03918   100 LDGSEVLEEGDSSVREWVERlipyhvflNAIYIRQgeidaileSDESREKvvrqilGLDDYENAYKNLGEvikeikrriE 179
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  629 VTEELAAATAQVSHLqLKmtaHQKKETELQLQ----LTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRR 704
Cdd:PRK03918   180 RLEKFIKRTENIEEL-IK---EKEKELEEVLReineISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKR 255
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1242862604  705 QLELKVTSLEEELTDLRAEKTSLEKNLSERK--KKSAQERCQAEAEMDEIRKSHQE---ELDRLRQLLK 768
Cdd:PRK03918   256 KLEEKIRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSEFYEEYLDELREiekRLSRLEEEIN 324
PLC-beta_C pfam08703
PLC-beta C terminal; This domain corresponds to the alpha helical C terminal domain of ...
677-816 1.94e-04

PLC-beta C terminal; This domain corresponds to the alpha helical C terminal domain of phospholipase C beta.


Pssm-ID: 430164 [Multi-domain]  Cd Length: 176  Bit Score: 43.51  E-value: 1.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  677 RLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEM------- 749
Cdd:pfam08703    9 RLEQELLELREEQYEQEKKRKEQHLTEQIQKLKELAREKQAAELKALKESSESEKKEMKKKLERKRLESIQEAkkrtsdk 88
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  750 -------DEIRKSH-QEELDRLRQL----------LKKARVSTDQAAAEQLTLAQAELQSQWEAKCEQLLASARdEHLQQ 811
Cdd:pfam08703   89 aaqerlkKEINNSHiQEVVQSIKQLeekqkrrqekLEEKQAECLQQIKEEEPQLQAELNAEYEEKLKGLPAEVR-ESVKS 167

                   ....*
gi 1242862604  812 YREVC 816
Cdd:pfam08703  168 CLKEG 172
tig TIGR00115
trigger factor; Trigger factor is a ribosome-associated molecular chaperone and is the first ...
185-255 2.02e-04

trigger factor; Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome. [Protein fate, Protein folding and stabilization]


Pssm-ID: 272913 [Multi-domain]  Cd Length: 410  Bit Score: 45.24  E-value: 2.02e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1242862604  185 LVAAEGPAVETGDSLEVAYTGwllqnHVLGQVFDSTANKDkpLRLKLGSGKVVKGLEDGLLGMKKGGKRLI 255
Cdd:TIGR00115  141 LVPVERGAAEKGDRVTIDFEG-----FIDGEAFEGGKAEN--FSLELGSGQFIPGFEEQLVGMKAGEEKEI 204
COG5281 COG5281
Phage-related minor tail protein [Mobilome: prophages, transposons];
569-864 2.13e-04

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 227606 [Multi-domain]  Cd Length: 833  Bit Score: 45.40  E-value: 2.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  569 IQENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATENTQAKVteELAAATAQVSHLQLKMT 648
Cdd:COG5281    285 QLEQIAALQRAGDTAAAAAAAAEAAAAMDDRTARVKENMGTLETAWDALADAAKKMWDAVL--GIGREDKQAALLAAKLA 362
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  649 AHQKKETELQLQLTDNLKetdLLRGHVTRLQADLSELREASEQTQTKFK--SEKQSRRQLELKVTSLEEELTDLRAEKTS 726
Cdd:COG5281    363 AEKLARVTAQGALNARLK---LAQDDLTQAELNYAAADQAANQEGALNAreDEAEVLSTQEERRDILKNLLADAEKRTAR 439
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  727 LEKnLSERKKKSAQERCQAEAEMDEIRKSHQEELDRlrQLLKKARVSTDQAAAEQLTLA--------------QAELQSQ 792
Cdd:COG5281    440 QEE-LNKALAKAKILQADKAAKAYQEDILQREAQSR--GKTAAAERSQEQMTAALKALLafqqqiadlsgakeKASDQKS 516
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1242862604  793 WEAKCEQLLASARDEHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAfteqkEHMQRLEKTKSQAPAGR 864
Cdd:COG5281    517 LLWKAEEQYALLKEEAKQRQLQEQKALLEHKKETLEYTSQLAELLDQQAD-----RFELSAQAAGSQKERGS 583
EmrA COG1566
Multidrug resistance efflux pump [Defense mechanisms];
744-863 2.52e-04

Multidrug resistance efflux pump [Defense mechanisms];


Pssm-ID: 224482 [Multi-domain]  Cd Length: 352  Bit Score: 44.63  E-value: 2.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  744 QAEAEMDEIRKshqeELDRLRQLLKKARVSTDQAAAEQLTLAQAELQ-----SQWEAKCEQLLASARDEHLQQYREVCAQ 818
Cdd:COG1566     95 QAEAALAAAEA----QLRNLRAQLASAQALIAQAEAQDLDQAQNELErraelAQRGVVSREELDRARAALQAAEAALAAA 170
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1242862604  819 RDAHQQKLALLQDECLALQAQIAAFTEQKEHMQR-LEKTKSQAPAG 863
Cdd:COG1566    171 QAAQKQNLALLESEVSGAQAQVASAEAALDQAKLdLERTVIRAPVD 216
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
571-769 2.72e-04

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 45.20  E-value: 2.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  571 ENERLKQELLEKSSRI-EEQNDKISDLIERNQRYVEQSN--------LM-----MEKRNNSLQTATENTQAKVTEELAAA 636
Cdd:pfam10174  537 ENQLKKAHNAEEAVRTnPEINDRIRLLEQEVARYKEESGkaqaeverLLgilreVENEKNDKDKKIAELESLTLRQMKEQ 616
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  637 TAQVSHLQLKMTAHQKKETELqlqLTDNLKETDLLRGHVTRLQadLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEE 716
Cdd:pfam10174  617 NKKVANIKHGQQEMKKKGAQL---LEEARRREDNLADNSQQLQ--LEELMGALEKTRQELDATKARLSSTQQSLAEKDGH 691
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  717 LTDLRAEKtslEKNLSERKKKSAQERCQAEAEMD------EI----RKSHQEEL-------DRLRQLLKK 769
Cdd:pfam10174  692 LTNLRAER---RKQLEEILEMKQEALLAAISEKDaniallELssskKKKTQEEVmalkrekDRLVHQLKQ 758
YqiK COG2268
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
675-907 3.08e-04

Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];


Pssm-ID: 225177 [Multi-domain]  Cd Length: 548  Bit Score: 44.82  E-value: 3.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  675 VTRLQADlSELREASEQTQTKFKSEKQSR----RQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAE---- 746
Cdd:COG2268    216 IAQVLQD-AEIAENEAEKETEIAIAEANRdaklVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEqaei 294
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  747 -----AEMDEIRK----SHQEELDRLRQLLKKARVSTDQAAAEQ-----LTLAQAELQSQWEAKCEQLLASA--RDEHLQ 810
Cdd:COG2268    295 laeqaIQEEKAQAeqevQHAKALEAREMRVGLIERQKETELEPQersyfINAAQRQAQEEAKAAANIAEAIGaqAEAAVE 374
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  811 QYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEHMQRLEKT--KSQAPAGRAAADPSEKVKKIMNQVFQSLRGEF 888
Cdd:COG2268    375 TARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAeiKAEAEAIREKGKAEAEAKRALAEAIQVLGDAA 454
                          250
                   ....*....|....*....
gi 1242862604  889 ELEESYDGGTILRTIMHTI 907
Cdd:COG2268    455 AAELFKALVQALPEVAEEA 473
TPH pfam13868
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ...
565-859 3.43e-04

Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.


Pssm-ID: 433539 [Multi-domain]  Cd Length: 341  Bit Score: 44.13  E-value: 3.43e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  565 IQRIIQENERLKQELLEKSSRIEEQNDKISDLIERnqryvEQSNLMMEKRNNslqtatentQAKVTEELAAATAQvshLQ 644
Cdd:pfam13868   78 LEEQIEEREQKRQEEYEEKLQEREQMDEIVERIQE-----EDQAEAEEKLEK---------QRQLREEIDEFNEE---QA 140
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  645 LKMTAHQKKETELQLQLTDNLKEtdllrghvtrlQADLSELREASEQTQTKFKSEKQSR-RQLELKVTSLEEELTDLRAE 723
Cdd:pfam13868  141 KWKELEKEEEKEEDLRILEYLKE-----------KAEREEEREAERREIKEEKEREIARlRAQQEKAQDEKAERDELRAK 209
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  724 KTsLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELdRLRQLLKKARVSTDQAAAEQLTLAQAELQSQweakcEQLLAS 803
Cdd:pfam13868  210 LY-QEEQERKWRQKEREEAEKKARQRQELQQAREEQI-ELKERRLAEEAEREEEEFERMLRKQAEDEEI-----EQEEAE 282
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1242862604  804 ARDEHLQQYR-EVCAQ-RDAHQQKLALLQDEclaLQAQIAAFTEQKEHMQRLEKTKSQ 859
Cdd:pfam13868  283 KRREKRLEHRrELEKQiEERERQRAAEREEE---LEEGERLREEEAERRERIEEERQK 337
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
509-741 3.49e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.06  E-value: 3.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  509 EARQHNTEIRmaVNKVADKMDHLMTKVEELQKhssgnsmllpsmsvtmETSMIMSNIQRIIQENERLKQELLEKSSRIEE 588
Cdd:TIGR02169  321 EERLAKLEAE--IDKLLAEIEELEREIEEERK----------------RRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  589 QNDKISDLIERNQRYVEqsnlmmekRNNSLQTatenTQAKVTEELAAATAQVSHLQLKMTAHQKKETELQLQLTDNLKET 668
Cdd:TIGR02169  383 TRDELKDYREKLEKLKR--------EINELKR----ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1242862604  669 DLLRGHVTRLQADLSELREASEQTQTKFksekqsrRQLELKVTSLEEELTDLRAEKTSLEKnlSERKKKSAQE 741
Cdd:TIGR02169  451 KKQEWKLEQLAADLSKYEQELYDLKEEY-------DRVEKELSKLQRELAEAEAQARASEE--RVRGGRAVEE 514
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
518-858 4.44e-04

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 44.43  E-value: 4.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  518 RMAVNK-----VADKMDHLMTKVEELQK----HSSGNSMLLPSMSVT------METSMIMS--NIQRIIQENERLKQE-- 578
Cdd:pfam10174   54 RISVLKeqyrvTQEENQHLQLTIQALQDelraQRDLNQLLQQDFTTSpvdgedKFSTPELTeeNFRRLQSEHERQAKElf 133
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  579 LLEKS-----SRIEEQNDKISDLIERNQRYVEqsnlMMEKRNNSlQTATENTQAKvTEELAAATAQVSHLQLKMtahQKK 653
Cdd:pfam10174  134 LLRKTleemeLRIETQKQTLGARDESIKKLLE----MLQSKGLP-KKSGEEDWER-TRRIAEAEMQLGHLEVLL---DQK 204
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  654 ETELQlqltdNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLeeeltdlraeKTSLEKNLSE 733
Cdd:pfam10174  205 EKENI-----HLREELHRRNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQML----------KTNGLLHTED 269
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  734 RkkksaqercQAEAEMDEIRKSH----QEELDRLRQLL--KKARVSTDQAAAEQLTLAQAElqsqweakCEQllasarde 807
Cdd:pfam10174  270 R---------EEEIKQMEVYKSHskfmKNKIDQLKQELskKESELLALQTKLETLTNQNSD--------CKQ-------- 324
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1242862604  808 HLQQYREVCAqrdAHQQKLALLQDECLALQAQI----AAFTEQKEHMQRLEKTKS 858
Cdd:pfam10174  325 HIEVLKESLT---AKEQRAAILQTEVDALRLRLeekeSFLNKKTKQLQDLTEEKS 376
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
647-882 5.05e-04

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 224259 [Multi-domain]  Cd Length: 294  Bit Score: 43.52  E-value: 5.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  647 MTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREaseqtqtkfksekqSRRQLELKVTSLEEELTDLRAEKTS 726
Cdd:COG1340      1 SLAMLDKLDELELKRKQLKEEIEELKEKRDELRKEASELAE--------------KRDELNAKVRELREKAQELREERDE 66
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  727 LEKNLSERKKKSAQERCQAEAEMDEIRK-SHQEELDRLRQLLKKARvstdQAAAEQLTLAQ--AELQSQWEAKCEQLLAS 803
Cdd:COG1340     67 INEEVQELKEKRDEINAKLQELRKEYRElKEKRNEFNLGGRSIKSL----EREIERLEKKQqtSVLTPEEERELVQKIKE 142
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1242862604  804 ARdehlQQYREVCAQRDAHqQKLALLQDECLALQaqiaafTEQKEHMQRLEKTksqapagraaADPSEKVKKIMNQVFQ 882
Cdd:COG1340    143 LR----KELEDAKKALEEN-EKLKELKAEIDELK------KKAREIHEKIQEL----------ANEAQEYHEEMIKLFE 200
GumC COG3206
Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane ...
581-821 5.10e-04

Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225747 [Multi-domain]  Cd Length: 458  Bit Score: 43.97  E-value: 5.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  581 EKSSRIEEQ--NDKISDLIERNQRYVEQSNLMMEKRNNSLQtatentqakvtEELAAATAQVSH--LQLKMTAHQKKETE 656
Cdd:COG3206    168 KLAAKLANAlaQAYLADQLEAQLEAFRRASDSLDERLEELR-----------ARLQEAEAQVEDfrAQHGLTDAARGQLL 236
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  657 LQLQLTDNLKETDLlrghvTRLQADLSELREASEQTQTKFKSEKQSRRQlelkvTSLEEELTDLRAEKTSLEKNLSERKK 736
Cdd:COG3206    237 SEQQLSALNTQLQS-----ARARLAQAEARLASLLQLLPLGREAAALRE-----VLESPTIQDLRQQYAQVRQQIADLST 306
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  737 KSA---QERCQAEAEMDEIRKSHQEELDRLRQLLKkarvsTDQAAAEQLtlaQAELQSQwEAKCEQLLASArDEHLQQYR 813
Cdd:COG3206    307 ELGakhPQLVALEAQLAELRQQIAAELRQILASLP-----NELALLEQQ---EAALEKE-LAQLKGRLSKL-PKLQVQLR 376

                   ....*...
gi 1242862604  814 EvcAQRDA 821
Cdd:COG3206    377 E--LEREA 382
PspA COG1842
Phage shock protein A [Transcription, Signal transduction mechanisms];
611-805 5.21e-04

Phage shock protein A [Transcription, Signal transduction mechanisms];


Pssm-ID: 224755 [Multi-domain]  Cd Length: 225  Bit Score: 42.69  E-value: 5.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  611 MEKRNNSLQTATENTQ---AKVTEELAAATAQV--SHLQLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQaDLSEL 685
Cdd:COG1842     22 AEDPEKMLEQAIRDMEselAKARQALAQAIARQkqLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQ-SLEDL 100
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  686 REASEQTQTKFKsekQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKkksAQERCQ----------AEAEMDEIRKS 755
Cdd:COG1842    101 AKALEAELQQAE---EQVEKLKKQLAALEQKIAELRAKKEALKARKAAAK---AQEKVNrslgggssssAMAAFERMEEK 174
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1242862604  756 hQEELDRLRQLLKKARVSTDQAAAEQltLAQAELQSQWEAKCEQLLASAR 805
Cdd:COG1842    175 -IEEREARAEAAAELAEGSGDDLDKE--FAQAGAQSAVDSRLAALKARMK 221
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
520-848 5.42e-04

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 44.45  E-value: 5.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  520 AVNKVADKMDHLMTKVEELQKHSSGNSMLLPSMsvtmetsmimsniQRIIQENERLKQELLEKSSRIEEQNdkisDLIER 599
Cdd:COG4717    182 QINQLLEKLKQERNEIDEAEKEYATYHKLLESR-------------RAEHARLAELRSELRADRDHIRALR----DAVEL 244
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  600 NQRYVEQSNLMMEKRNNSLQTATENTQA-----KVTEELAAATAQVSHLQLKMtAHQKKETELQLQltdnLKETDLLRgh 674
Cdd:COG4717    245 WPRLQEWKQLEQELTRRREELATFPRDGvlrleKREAHLQKTEAEIDALLVRL-AELKDLASQLIP----AKEAVLQA-- 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  675 VTRLQADLSELRE-ASEQTQTKFKSEKQSRRQLELKVTSLEeeltdlrAEKTSLEKNLSERKKKSAQERcqaeaEMDEIR 753
Cdd:COG4717    318 LVRLHQQLSEIKAsAFELTETLAGIEADLRDKEEAAGNGFE-------AERVHDLRSLECMLRYQSSQR-----ELKQTE 385
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  754 KSHQEELDRLRQLLKKarvsTDQAAAEQLTLAQAELQSQWEAKCEQLLASARDEHLQQYREVCAQRDAHQQKLALLQDEc 833
Cdd:COG4717    386 AAYCKRLDEKRLFEDE----AEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQKQRFLREK- 460
                          330
                   ....*....|....*
gi 1242862604  834 laLQAQIAAFTEQKE 848
Cdd:COG4717    461 --QTAFERQKTEHTK 473
PTZ00121 PTZ00121
MAEBL; Provisional
509-892 6.20e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.36  E-value: 6.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  509 EARQHNTEIRM-AVNKV--ADKMDHLMTKVEELQKHSSGNSMLLPSMSVtmetsmiMSNIQRIIQENERLKQELLEKSsr 585
Cdd:PTZ00121  1216 EARKAEDAKKAeAVKKAeeAKKDAEEAKKAEEERNNEEIRKFEEARMAH-------FARRQAAIKAEEARKADELKKA-- 1286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  586 ieEQNDKISDLIERNQ-RYVEQSNLMMEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKMTAHQKKETELQLQLTDN 664
Cdd:PTZ00121  1287 --EEKKKADEAKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  665 LKETDLLRGHVTRLQADlsELREASEQT----QTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQ 740
Cdd:PTZ00121  1365 KAEAAEKKKEEAKKKAD--AAKKKAEEKkkadEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  741 ERCQAEA--EMDEIRKSHQ-----EELDRLRQLLKKA----RVSTDQAAAEQLTLAQAELQSQWEA--KCEQLLASARDE 807
Cdd:PTZ00121  1443 AKKADEAkkKAEEAKKAEEakkkaEEAKKADEAKKKAeeakKADEAKKKAEEAKKKADEAKKAAEAkkKADEAKKAEEAK 1522
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  808 HLQQYREVCAQRDAHQQKLAllQDECLALQAQIAAFTEQKEHMQRLEKTKSQAPAGRAAADPSEKVKKIMNQVFQSLRGE 887
Cdd:PTZ00121  1523 KADEAKKAEEAKKADEAKKA--EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600

                   ....*
gi 1242862604  888 FELEE 892
Cdd:PTZ00121  1601 YEEEK 1605
PRK11637 PRK11637
AmiB activator; Provisional
575-796 6.27e-04

AmiB activator; Provisional


Pssm-ID: 236942 [Multi-domain]  Cd Length: 428  Bit Score: 43.53  E-value: 6.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  575 LKQELLEKSSRIEEQNDKISDLIERNQryvEQSNLMMEKrNNSLQTaTENTQAKVTEELAAATAQVSHL----------- 643
Cdd:PRK11637    52 IQQDIAAKEKSVRQQQQQRASLLAQLK---KQEEAISQA-SRKLRE-TQNTLNQLNKQIDELNASIAKLeqqqaaqerll 126
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  644 --QLKMTAHQKKETELQLqltdnlketdLLRGHVT----RLQADLSELREASEQTQTKFKsekQSRRQLELKVTSLEEE- 716
Cdd:PRK11637   127 aaQLDAAFRQGEHTGLQL----------ILSGEESqrgeRILAYFGYLNQARQETIAELK---QTREELAAQKAELEEKq 193
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  717 ------LTDLRAEKTSLEKNLSERKK------KSAQERCQAEAEMdeirksHQEElDRLRQLLKKARVSTDQAAAEQLTL 784
Cdd:PRK11637   194 sqqktlLYEQQAQQQKLEQARNERKKtltgleSSLQKDQQQLSEL------RANE-SRLRDSIARAEREAKARAEREARE 266
                          250
                   ....*....|..
gi 1242862604  785 AQAELQSQWEAK 796
Cdd:PRK11637   267 AARVRDKQKQAK 278
ATG16 pfam08614
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ...
595-763 6.61e-04

Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.


Pssm-ID: 430106 [Multi-domain]  Cd Length: 176  Bit Score: 41.83  E-value: 6.61e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  595 DLIERNQRYVEQSNLMmEKRNNSLQTATE-----------NTQAKVTEELAAATAQVSHLQLKMTAHQKKETELQLQLTD 663
Cdd:pfam08614    4 ELIDAYNRLADRTALL-EAENAALQSEPEsvppstssstaSASPVQSASIQSLEQLLAQLREELAELYRSRGELAQQLVD 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  664 nlketdllrghvtrLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEEL-------TDLRAEKTSLEKNLSerkk 736
Cdd:pfam08614   83 --------------LNEELQELEKKLREDERRLAELEAERAQLEEKLRDREEELrekrklnQDLQDELVALQLQLN---- 144
                          170       180
                   ....*....|....*....|....*..
gi 1242862604  737 ksaqercQAEAEMDEIRKSHQEELDRL 763
Cdd:pfam08614  145 -------MAEEKLRKLEKENRELVERW 164
Jnk-SapK_ap_N pfam09744
JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins ...
669-769 6.98e-04

JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have an RhoGEF pfam00621 domain at their C-terminal end.


Pssm-ID: 430795 [Multi-domain]  Cd Length: 156  Bit Score: 41.47  E-value: 6.98e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  669 DLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQ----LELKVTSLEEELTDLRAEKTSLE---KNLsERKKKSAQE 741
Cdd:pfam09744   39 ESLASRNQEHNVELEELREDNEQLETQYEREKQLRKRaeeeLEEIEDQWEQETKDLQSQVEQLEeenRRL-ELKAKNYAD 117
                           90       100       110
                   ....*....|....*....|....*....|..
gi 1242862604  742 RCQA----EAEMDeirKSHQEELDRLRQLLKK 769
Cdd:pfam09744  118 HVSRleekEAELK---KEYSKLHERETEVLRK 146
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
679-867 8.34e-04

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 43.26  E-value: 8.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  679 QADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEmdEIRKSHQE 758
Cdd:PRK09510    74 AKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAA--AAKAKAEA 151
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  759 ELDRLRQLLKKARVSTD-QAAAEQLTLAQAELQSQWEAKCEQLLASARDEHLQQYREVCAQRDAHQQKLAllqdecLALQ 837
Cdd:PRK09510   152 EAKRAAAAAKKAAAEAKkKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAA------EAKA 225
                          170       180       190
                   ....*....|....*....|....*....|
gi 1242862604  838 AQIAAFTEQKEHMQRLEKTKSQAPAGRAAA 867
Cdd:PRK09510   226 AAAKAAAEAKAAAEKAAAAKAAEKAAAAKA 255
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
566-795 8.74e-04

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 430825 [Multi-domain]  Cd Length: 305  Bit Score: 42.81  E-value: 8.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  566 QRIIQENERLKQELLEKSSRIEEQNDKISDLiernqryvEQSNLMMEKRnnslqtatentqaKVTEELAAATAQVSHLQl 645
Cdd:pfam09787   17 ARILQSKEKLIASLKEGSGVEGLDGSTALSL--------ELDELRQERD-------------LLREELQQLNQQIEQLR- 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  646 kmtahqkkeTELQlqltdnlkETDllrghvTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELtdlraekT 725
Cdd:pfam09787   75 ---------TELQ--------ELE------AQQQEEAESSREQLQDLEEQLATERQARREAEAELERLQEEL-------R 124
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1242862604  726 SLEKNLSeRKKKSAQERCqaeaemdeirKSHQEELDRLR-QLLKKARVSTDQAAAE----QLTLAQAELQSQWEA 795
Cdd:pfam09787  125 YLEEELR-RTKATLQSRI----------KDREAEIEKLRnQLTNKSQSSSSQSELEnrlhQLTESLIQKQTMLEA 188
CCCAP pfam15964
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ...
558-890 9.09e-04

Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.


Pssm-ID: 435040 [Multi-domain]  Cd Length: 703  Bit Score: 43.36  E-value: 9.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  558 TSMIMSNIQRIIQENERLKQELLEKSSRIEEQNDKISDLIERnqryVEQSNLMMEKRNnslqtaTENTQAKVteelaaat 637
Cdd:pfam15964  295 TNVHMQTIERLTKERDDLMSALVSVRSSLAEAQQRESSAYEQ----VKQAVQMTEEAN------FEKTKALI-------- 356
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  638 aQVSHLQLKMTAHQKK-ETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQtqtkfksekqsrrqlelKVTSLEEE 716
Cdd:pfam15964  357 -QCEQLKSELERQKERlEKELASQQEKRAQEKEALRKEMKKEREELGATMLALSQ-----------------NVAQLEAQ 418
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  717 LTDLRAEKTSLEKNLSERKKKSAQErcqaEAEMDEIrkshqeeLDRLRQLLKKARVSTDQAAAEQLTLaQAELQSQWEAK 796
Cdd:pfam15964  419 VEKVTREKNSLVSQLEEAQKQLASQ----EMDVTKV-------CGEMRYQLNQTKMKKDEAEKEHREY-RTKTGRQLEIK 486
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  797 cEQLLASARDEhLQQYREvcaQRDAHQQKLALLQDECLALqAQIAAFTEQKEHMQRLEKTKSQAPAGRAAAdpsekvkki 876
Cdd:pfam15964  487 -DQEIEKLGLE-LSESKQ---RLEQAQQDAARAREECLKL-TELLGESEHQLHLTRLEKESIQQSFSNEAK--------- 551
                          330
                   ....*....|....
gi 1242862604  877 mNQVFQSLRGEFEL 890
Cdd:pfam15964  552 -AQALQAQQREQEL 564
mukB PRK04863
chromosome partition protein MukB;
505-896 9.17e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 43.79  E-value: 9.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  505 FLMTearqHNTEIRMAVNKVADKMDHLMTKVEELqKHSSGNSMLLPSMsVTMETSMIMSNIQRIiqENER---------L 575
Cdd:PRK04863   220 YLLP----ENSGVRKAFQDMEAALRENRMTLEAI-RVTQSDRDLFKHL-ITESTNYVAADYMRH--ANERrvhleealeL 291
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  576 KQELLE-KSSRIEEQNDKIS-----DLIERNQRYVEQSNLMMEKRNNSLQTATENTQA--KVTEELAAATAQV-SHLQLK 646
Cdd:PRK04863   292 RRELYTsRRQLAAEQYRLVEmarelAELNEAESDLEQDYQAASDHLNLVQTALRQQEKieRYQADLEELEERLeEQNEVV 371
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  647 MTAHQKKEtELQLQLTDNLKETDllrghvtRLQADLSELREASEQTQTKFKSEKQSRRQLE----------LKVTSLEEE 716
Cdd:PRK04863   372 EEADEQQE-ENEARAEAAEEEVD-------ELKSQLADYQQALDVQQTRAIQYQQAVQALErakqlcglpdLTADNAEDW 443
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  717 LTDLRA-EKTSLEKNLS-ERKKKSAQE-RCQAEAEMDEIRK-----SHQEELDRLRQLLKKARvsTDQAAAEQLT----- 783
Cdd:PRK04863   444 LEEFQAkEQEATEELLSlEQKLSVAQAaHSQFEQAYQLVRKiagevSRSEAWDVARELLRRLR--EQRHLAEQLQqlrmr 521
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  784 LAQAELQSQWEAKCEQLLASARDEHLQQYR---EVCAQRDAHQQKLALLQDECLALQAQ-IAAFTEQKEHMQRLEKTKSQ 859
Cdd:PRK04863   522 LSELEQRLRQQQRAERLLAEFCKRLGKNLDdedELEQLQEELEARLESLSESVSEARERrMALRQQLEQLQARIQRLAAR 601
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*...
gi 1242862604  860 APAGRAAADPSEKV-----------KKIMNQVFQSLRGEFELEESYDG 896
Cdd:PRK04863   602 APAWLAAQDALARLreqsgeefedsQDVTEYMQQLLERERELTVERDE 649
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
185-285 9.20e-04

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 42.09  E-value: 9.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  185 LVAAEGPAVETGDSLEVAYTGWLLQnhvlGQVFDSTANKDKPLRLKLGSgkVVKGLEDGLLGMKKGGKRLIITPSACAAG 264
Cdd:PRK11570   109 LTQGEGAIPARTDRVRVHYTGKLID----GTVFDSSVARGEPAEFPVNG--VIPGWIEALTLMPVGSKWELTIPHELAYG 182
                           90       100
                   ....*....|....*....|.
gi 1242862604  265 SEGViGWTQPTDSILVFEVEV 285
Cdd:PRK11570   183 ERGA-GASIPPFSTLVFEVEL 202
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
506-770 9.50e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 43.72  E-value: 9.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  506 LMTEARQHNTEIRMAVNKVADKMDHLMTKVEELQKHSSGNSMLLPSMSVTMETSMImsniqriiqenerlkqelleksSR 585
Cdd:COG3096    837 EIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLA----------------------DR 894
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  586 IEEQNDKIsDLIERNQRYVEQSNLM---MEKRNNSLQTATENTQAkVTEELAAATAQVSHLQ---------LKMTAHQKK 653
Cdd:COG3096    895 VEEIRERL-DEAQEAARFIQQHGNTlskLEPIASVLQSDPEQFEQ-LKEDYAQAQQMQRQARqqafaltevVQRRAHFSY 972
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  654 ETELQLqLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKF----------KSEKQSRRQLelkVTSLEEELTDL--R 721
Cdd:COG3096    973 SDSAEM-LSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLsqynqvlaslKSSYDTKKEL---LNELQQELQDIgvR 1048
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1242862604  722 AEKTSLEK------NLSERKKKSAQERCQAEAEMDEIrkshQEELDRLRQLLKKA 770
Cdd:COG3096   1049 ADSGAEERarirrdELHAQLSTNRSRRNQLEKQLTFC----EAEMDNLTRKLRKL 1099
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
613-848 1.12e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 43.11  E-value: 1.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  613 KRNNSLQTATENTQAKVT---EELAAATAQVSHLQLKMTAHQKKETELQlqltdnlketdllrghvtRLQADLSELRE-- 687
Cdd:PRK02224   206 ERLNGLESELAELDEEIEryeEQREQARETRDEADEVLEEHEERREELE------------------TLEAEIEDLREti 267
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  688 -ASEQTQTKFKSEKQSRRQlelKVTSLEEELTDLRAEktsleknlserkkksaqerCQAEAEMDEIRKSHQEELDR---- 762
Cdd:PRK02224   268 aETEREREELAEEVRDLRE---RLEELEEERDDLLAE-------------------AGLDDADAEAVEARREELEDrdee 325
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  763 LRQLLKKARVSTDQAA--AEQLTLAQAELQSQWEAKCEQllASARDEHLQQYREVCAQRdahQQKLALLQDECLALQAQI 840
Cdd:PRK02224   326 LRDRLEECRVAAQAHNeeAESLREDADDLEERAEELREE--AAELESELEEAREAVEDR---REEIEELEEEIEELRERF 400

                   ....*...
gi 1242862604  841 AAFTEQKE 848
Cdd:PRK02224   401 GDAPVDLG 408
Caldesmon pfam02029
Caldesmon;
573-772 1.23e-03

Caldesmon;


Pssm-ID: 426572 [Multi-domain]  Cd Length: 490  Bit Score: 42.93  E-value: 1.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  573 ERLKQELLEKSSRIEEQNDKISDLIERNQRYVEqsNLMMEKRNNSLQTATENTQAKVTEElAAATAQVSHLQLKMTAHQK 652
Cdd:pfam02029   73 ERRQKRLQEALERQKELDPTITDEQASKPRSTE--NTPEEKNNTEEEEKSSTRKERYEIE-EREVSEKSYEKDDKKAVPK 149
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  653 KETELQLQLTDNLKEtdllrghvtRLQADLSELREASEQTQTKFKSEK---QSRRQLELKV--TSLEEELTDL----RAE 723
Cdd:pfam02029  150 EEEEEEDAKTEEEEE---------EEEEEKKVSKKKKEKLKDEYTSKVfldQKKGHPEQKSqnGALEEVTSMTvklkRTE 220
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1242862604  724 KTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQE----ELDRLRQLLKKARV 772
Cdd:pfam02029  221 RTFSQKSLVAEDEEEGAAFLEAEQKLEELRRRRQEkesqEFEKLRQKQQEAEL 273
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
571-859 1.23e-03

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 42.89  E-value: 1.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  571 ENERLKQELLEKSSRIEEQNDKISDLIERNQRYVEQ-SNLmmEKRNNSLQTATENTQAKVT---EELAAATAQVSHLQLK 646
Cdd:pfam10174  381 EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQlAGL--KERVKSLQTDSSNTDTALTtleEALSEKERIIERLKEQ 458
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  647 mtaHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSE----LREASEQTQTKFKS--EKQSR-RQLELKVTSLEEELTD 719
Cdd:pfam10174  459 ---REREDRERLEELESLKKENKDLKEKVSALQPELTEkessLIDLKEHASSLASSglKKDSKlKSLEIAVEQKKEECSK 535
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  720 LRAE-KTSLEKNLSERKKKSAQERCQA-EAEM----DEIRKShQEELDRLRQLLKKA---RVSTDQ--AAAEQLTLAQAE 788
Cdd:pfam10174  536 LENQlKKAHNAEEAVRTNPEINDRIRLlEQEVarykEESGKA-QAEVERLLGILREVeneKNDKDKkiAELESLTLRQMK 614
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1242862604  789 LQSQWEAKCEQLLASARDEHLQQYREVCAQRDAHQQKLALLQDEclalqaqiaafteqkEHMQRLEKTKSQ 859
Cdd:pfam10174  615 EQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLE---------------ELMGALEKTRQE 670
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
515-776 1.24e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 43.11  E-value: 1.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  515 TEIRMAVNKVADKMDHLMTKVEELQKHSSG-NSMLLPSMSVTMETSMIMSNIQRIIQENERLKQELLEKSSRIEEQNDKI 593
Cdd:TIGR00606  825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDqQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREI 904
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  594 SDliERNQRY-VEQSNLMMEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKMTAHQKKETE-LQLQLTDNLKETDLL 671
Cdd:TIGR00606  905 KD--AKEQDSpLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgKDDYLKQKETELNTV 982
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  672 RGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVT--SLEEELTDLRAEKTSLEKNLSE-RKKKSAQERCQAEAE 748
Cdd:TIGR00606  983 NAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTlrKRENELKEVEEELKQHLKEMGQmQVLQMKQEHQKLEEN 1062
                          250       260       270
                   ....*....|....*....|....*....|...
gi 1242862604  749 MDEIRKSHQEELDRLRQ-----LLKKARVSTDQ 776
Cdd:TIGR00606 1063 IDLIKRNHVLALGRQKGyekeiKHFKKELREPQ 1095
PRK00106 PRK00106
ribonuclease Y;
684-788 1.33e-03

ribonuclease Y;


Pssm-ID: 178867 [Multi-domain]  Cd Length: 535  Bit Score: 42.93  E-value: 1.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  684 ELREASEQTQTKFKSEKQSRRQLELKVTSLEEELtDLRAEKTSLEKNLSERKKKSAQERC----QAEAEMDEIRKSHQEE 759
Cdd:PRK00106    80 EARKYREEIEQEFKSERQELKQIESRLTERATSL-DRKDENLSSKEKTLESKEQSLTDKSkhidEREEQVEKLEEQKKAE 158
                           90       100
                   ....*....|....*....|....*....
gi 1242862604  760 LDRLRQLlkkarvstDQAAAEQLTLAQAE 788
Cdd:PRK00106   159 LERVAAL--------SQAEAREIILAETE 179
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
706-850 1.48e-03

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 41.58  E-value: 1.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  706 LELKVTSLEEELTDLRAEKTSLEKNLSERKkksaqercQAEAEMDEIRKSHQEELDRLRQLLKKARVS----TDQAAAEQ 781
Cdd:COG1579     22 LEPRIKEIRKALKKAKAELEALNKALEALE--------IELEDLENQVSQLESEIQEIRERIKRAEEKlsavKDERELRA 93
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  782 LTLAQAELQSQWEAKCEQL-------------LASARDEHLQQYREVCAQRDAHQQKLALLQDECLALQAQIaafTEQKE 848
Cdd:COG1579     94 LNIEIQIAKERINSLEDELaelmeeieklekeIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKR---EELKE 170

                   ..
gi 1242862604  849 HM 850
Cdd:COG1579    171 KL 172
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
576-893 1.70e-03

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 428594 [Multi-domain]  Cd Length: 562  Bit Score: 42.32  E-value: 1.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  576 KQELLEKSSRIEEQNDKISDLIERNQRYVEqsnlmmekrnnslqtATENTQAKVTEELAAATAQVSHLQLKMTAHQKKET 655
Cdd:pfam05701   30 RIQTVERRKLVELELEKVQEEIPEYKKQSE---------------AAEAAKAQVLEELESTKRLIEELKLNLERAQTEEA 94
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  656 ELQlqltdnlKETDLLRGHVTRLQADLSElrEASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLeknLSERK 735
Cdd:pfam05701   95 QAK-------QDSELAKLRVEEMEQGIAD--EASVAAKAQLEVAKARHAAAVAELKSVKEELESLRKEYASL---VSERD 162
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  736 KkSAQERCQAEAEMDEIRKSHQE---ELDRLRQLLKKARVSTDQAAAEQLTLAQAELQ--SQWEAKCEQLlasarDEHLQ 810
Cdd:pfam05701  163 I-AIKRAEEAVSASKEIEKTVEEltiELIATKESLESAHAAHLEAEEHRIGAALAREQdkLNWEKELKQA-----EEELQ 236
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  811 QYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQK-----EHMQRLEKTKSQAPAGRAAADPS-EKVK---------- 874
Cdd:pfam05701  237 RLNQQLLSAKDLKSKLETASALLLDLKAELAAYMESKlkeeaDGEGNEKKTSTSIQAALASAKKElEEVKaniekakdev 316
                          330
                   ....*....|....*....
gi 1242862604  875 KIMNQVFQSLRGEFELEES 893
Cdd:pfam05701  317 NCLRVAAASLRSELEKEKA 335
COG5022 COG5022
Myosin heavy chain [General function prediction only];
652-887 1.74e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 42.76  E-value: 1.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  652 KKETELQLQLTDNLKETDLLRGHVtrLQADLSElreaSEQTQTKFKSEKQS--RRQLELKVTSLEEELTDLRAEKTSLE- 728
Cdd:COG5022    823 QKTIKREKKLRETEEVEFSLKAEV--LIQKFGR----SLKAKKRFSLLKKEtiYLQSAQRVELAERQLQELKIDVKSISs 896
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  729 -KNLSERKKKSAQE-RCQAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAAAEQLTLAQAELQSQ---WEAKCEQL--L 801
Cdd:COG5022    897 lKLVNLELESEIIElKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVeskLKETSEEYedL 976
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  802 ASARDEHLQQYREVCAQRDAHQQKLALLQDECLALQAQiaafTEQKEHMQR-------LEKTKSQAPAGRAAADPSEKVK 874
Cdd:COG5022    977 LKKSTILVREGNKANSELKNFKKELAELSKQYGALQES----TKQLKELPVevaelqsASKIISSESTELSILKPLQKLK 1052
                          250
                   ....*....|...
gi 1242862604  875 KIMNQVFQSLRGE 887
Cdd:COG5022   1053 GLLLLENNQLQAR 1065
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
531-816 1.75e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 42.41  E-value: 1.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  531 LMTKVEELQK----HSSGNSmllpsmSVTMETSMIMSNIQRIIQENERLKQELLEKSSRIEEQndkiSDLIERNQRYVeq 606
Cdd:pfam05557  281 LSRRIEQLQQreitLKEENS------SLTSSARQLEKAQRELEQELAQYLKNIEDLNKKLKRH----KALVRRLQRRV-- 348
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  607 snLMMEKRNNSLQTATEN-----TQAKVTEELAAATAQVSHLQLKMtahQKKETELQLQLTDNLKETDLLRGHVTRLQAD 681
Cdd:pfam05557  349 --LLLTKERDGMRAILESydkelTPSNYSPQLLERIEEAEDMTQDM---QAHNEEMEAQLSVAEEELGGYKQQATTLERE 423
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  682 LSELREASEQTQTKFKSEKQSrrQLELKVTSLEEELTDLRAEKTSLEKNLSER---------KKKSAQERCQAEAEMDEI 752
Cdd:pfam05557  424 LQALRQQESLADPSYSKEEVD--SLRRKLETLEAERQRLREQKNELEMELERRclqgdydpkKTKVLHLSMNPAAEAYQQ 501
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1242862604  753 RKSH----QEELDRLRQLLKKARVSTDQAAAEQLTLAQAELQSQWEAKCEQLLASARDEHL--------QQYREVC 816
Cdd:pfam05557  502 RANDleklQAEIERLKRRLKKLEDDLEQVGSLPETTSTMNFKEVLELRKELESAELKNQRLkevfqakiQEFRDVC 577
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
694-896 1.86e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 42.52  E-value: 1.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  694 TKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKksaqercQAEAEMDEIRKSHQEELDRLRQLLKKARVS 773
Cdd:pfam12128  244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSA-------ELNQLLRTLDDQWKEKRDELNGELSAADAA 316
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  774 TdqaaaeqltlaqaelqsqweAKCEQLLASARDEHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEHMQRL 853
Cdd:pfam12128  317 V--------------------AKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAK 376
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1242862604  854 EKTKSQAPAGRAAADPSEKVKKIMNQVFQSLRGEFELEESYDG 896
Cdd:pfam12128  377 YNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQA 419
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
638-859 1.87e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 42.73  E-value: 1.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  638 AQVSHLQLKMTAHQK-KETELQLQLTDNLKETDL-LRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLE---LKVTS 712
Cdd:TIGR00606  187 ALETLRQVRQTQGQKvQEHQMELKYLKQYKEKACeIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEhnlSKIMK 266
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  713 LEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQLLKKARVSTDQAAAEQLTLAQAELQSQ 792
Cdd:TIGR00606  267 LDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELL 346
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1242862604  793 WEAKCEQLLASARDEHLQQYrEVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEHMQRLEKTKSQ 859
Cdd:TIGR00606  347 VEQGRLQLQADRHQEHIRAR-DSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQ 412
TPH pfam13868
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ...
557-811 1.98e-03

Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.


Pssm-ID: 433539 [Multi-domain]  Cd Length: 341  Bit Score: 41.82  E-value: 1.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  557 ETSMIMSNIQRIiQENERLKQEL-LEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNnslqtatENTQAKVTEELAA 635
Cdd:pfam13868   99 EREQMDEIVERI-QEEDQAEAEEkLEKQRQLREEIDEFNEEQAKWKELEKEEEKEEDLRI-------LEYLKEKAEREEE 170
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  636 ATAQVSHLQLKMTAHQKKETELQLQLTDNLKETDLLRghVTRLQADLSE-----LREASEQTQTKFKSEKQSRR-QLELK 709
Cdd:pfam13868  171 REAERREIKEEKEREIARLRAQQEKAQDEKAERDELR--AKLYQEEQERkwrqkEREEAEKKARQRQELQQAREeQIELK 248
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  710 VTSLEEELTDLRAEKtslEKNLSERKKKSAQERCQAEAEMdEIRKSHQEELDRLRQLLKKARvstdqAAAEQLTLAQAEL 789
Cdd:pfam13868  249 ERRLAEEAEREEEEF---ERMLRKQAEDEEIEQEEAEKRR-EKRLEHRRELEKQIEERERQR-----AAEREEELEEGER 319
                          250       260
                   ....*....|....*....|..
gi 1242862604  790 QSQWEAKCEQLLASARDEHLQQ 811
Cdd:pfam13868  320 LREEEAERRERIEEERQKKLKE 341
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
617-868 2.18e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 42.52  E-value: 2.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  617 SLQTATEnTQAKVTEELAAATAQVSHLQLKMT--AHQKKETELQLQLTDNLKETDLLRGHvtrlQADLSELREASEQTQT 694
Cdd:pfam12128  612 ALQSARE-KQAAAEEQLVQANGELEKASREETfaRTALKNARLDLRRLFDEKQSEKDKKN----KALAERKDSANERLNS 686
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  695 KFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNL-SERKKKSAQ-------ERCQAEAEMDEIRKSHQEELDRLR-Q 765
Cdd:pfam12128  687 LEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVeGALDAQLALlkaaiaaRRSGAKAELKALETWYKRDLASLGvD 766
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  766 LLKKARVSTDQAAAEQlTLAQAelqsqweAKCEQLLASARDEHLQQYREvcaQRDAHQQKLALLQDECLALQAQIAAFTE 845
Cdd:pfam12128  767 PDVIAKLKREIRTLER-KIERI-------AVRRQEVLRYFDWYQETWLQ---RRPRLATQLSNIERAISELQQQLARLIA 835
                          250       260
                   ....*....|....*....|...
gi 1242862604  846 QKEhmQRLEKTKSQAPAGRAAAD 868
Cdd:pfam12128  836 DTK--LRRAKLEMERKASEKQQV 856
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
516-857 2.66e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 41.96  E-value: 2.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  516 EIRMAVNKVADKMDHLMTKVEELQKHSSGNSMLLPSMSVTMETSMIMSNIQRIIQENERLKQELLEKSSRI--------- 586
Cdd:TIGR00606  748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSdldrtvqqv 827
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  587 -------EEQNDKISDLIERNQRyveqsnlMMEKRNNSLQTATENTQAKVTEELAAATAqvshlqlkmtahQKKETELQL 659
Cdd:TIGR00606  828 nqekqekQHELDTVVSKIELNRK-------LIQDQQEQIQHLKSKTNELKSEKLQIGTN------------LQRRQQFEE 888
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  660 QLTDNLKETDLLRGHVTRLQADLSELREASEQTQTK----FKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSE-- 733
Cdd:TIGR00606  889 QLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEkeelISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgk 968
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  734 --RKKKSAQERCQAEAEMDEIRKsHQEeldRLRQLLKKARVSTDQAAAEQLTLAQAELQSQWEAKCEQlLASARDEHLQQ 811
Cdd:TIGR00606  969 ddYLKQKETELNTVNAQLEECEK-HQE---KINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKE-VEEELKQHLKE 1043
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1242862604  812 YRE--VCAQRDAHQQ---KLALLQDECLALQAQIAAFTEQKEHMQRLEKTK 857
Cdd:TIGR00606 1044 MGQmqVLQMKQEHQKleeNIDLIKRNHVLALGRQKGYEKEIKHFKKELREP 1094
Laminin_I pfam06008
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ...
628-870 3.17e-03

Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.


Pssm-ID: 310534 [Multi-domain]  Cd Length: 258  Bit Score: 40.86  E-value: 3.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  628 KVTEELAAATAQVSHLQLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQtkfksekQSRRQLE 707
Cdd:pfam06008   16 KINYNLENLTKQLQEYLSPENAHKIQIEILEKELSSLAQETEELQKKATQTLAKAQQVNAESERTL-------GHAKELA 88
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  708 LKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQERcQAEAE--MDEIRKshqeeldrlRQLLKKARVSTDQAAAEQLTLA 785
Cdd:pfam06008   89 EAIKNLIDNIKEINEKVATLGENDFALPSSDLSRM-LAEAQrmLGEIRS---------RDFGTQLQNAEAELKAAQDLLS 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  786 QA-ELQSQWEAKCEQLLASARDEHLQQYREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEHMQRLEKTKSQAPAGR 864
Cdd:pfam06008  159 RIqTWFQSPQEENKALANALRDSLAEYEAKLSDLRELLREAAAKTRDANRLNLANQANLREFQRKKEEVSEQKNQLEETL 238

                   ....*.
gi 1242862604  865 AAADPS 870
Cdd:pfam06008  239 KTARDS 244
TolA COG3064
Membrane protein involved in colicin uptake [Cell wall/membrane/envelope biogenesis];
732-874 3.49e-03

Membrane protein involved in colicin uptake [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225606 [Multi-domain]  Cd Length: 387  Bit Score: 41.09  E-value: 3.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  732 SERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQlLKKARVSTDQAAAEQLTLAQAELQSQWEAKcEQLLASARDEHLQQ 811
Cdd:COG3064     72 SSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQ-LEKERLKAQEQQKQAEEAEKQAQLEQKQQE-EQARKAAAEQKKKA 149
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1242862604  812 YREVCAQRDAHQQKLALLQDECLALQAQIAAFTEQKEHMQRLEKTKSQAPAGRAA--ADPSEKVK 874
Cdd:COG3064    150 EAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAekAKAEAEAK 214
PRK15095 PRK15095
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
214-266 3.63e-03

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 237908 [Multi-domain]  Cd Length: 156  Bit Score: 39.31  E-value: 3.63e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1242862604  214 GQVFDSTANKDKPLRLKLGSGKVVKGLEDGLLGMKKGGKRLIITPSACAAGSE 266
Cdd:PRK15095    22 GSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP 74
Tropomyosin_1 pfam12718
Tropomyosin like; This family is a set of eukaryotic tropomyosins. Within the yeast Tpm1 and ...
682-800 4.40e-03

Tropomyosin like; This family is a set of eukaryotic tropomyosins. Within the yeast Tpm1 and Tpm2, biochemical and sequence analyses indicate that Tpm2p spans four actin monomers along a filament, whereas Tpm1p spans five. Despite its shorter length, Tpm2p can compete with Tpm1p for binding to F-actin. Over-expression of Tpm2p in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1p. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis. The family also contains higher eukaryote Tpm3 members.


Pssm-ID: 403808 [Multi-domain]  Cd Length: 142  Bit Score: 38.82  E-value: 4.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  682 LSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDL-------RAEKTSLEKNLSERKKK---SAQERCQAEA---- 747
Cdd:pfam12718    2 MNSLKLEAENAQERAEELEEKVKELEQENLEKEQEIKSLthknqqlEEEVEKLEEQLKEAKEKaeeSEKLKTNNENltrk 81
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1242862604  748 ------EMDEIRKSHQEELDRLRQllkkarvsTDqAAAEQLTLAQAELQS---QWEAKCEQL 800
Cdd:pfam12718   82 iqlleeELEESDKRLKETTEKLRE--------TD-VKAEHLERKVQALEQerdEWEKKYEEL 134
DUF4618 pfam15397
Domain of unknown function (DUF4618); This family of proteins is found in eukaryotes. Proteins ...
674-856 4.87e-03

Domain of unknown function (DUF4618); This family of proteins is found in eukaryotes. Proteins in this family are typically between 238 and 363 amino acids in length. There are two conserved sequence motifs: EYP and KCTPD.


Pssm-ID: 434695 [Multi-domain]  Cd Length: 258  Bit Score: 40.32  E-value: 4.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  674 HVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRaekTSLEKnlsERKKKSAQeRCQAEAEMDEIR 753
Cdd:pfam15397   61 NKKQLQQAKAELQEWEEKEESKLNKLEQQLEQLNAKIQKTQEELNFLS---TYKDK---EYPVKAVQ-IANLVRQLQQLK 133
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  754 KSHQEELDRLRQLLKKARvstdqaaaeqltlaqAELQSQWEAKCEQLLASARDEHLQQYREVCAQRDAHQQKLAllqdEC 833
Cdd:pfam15397  134 DSQQDELDELEEMRREVL---------------ESLSRKIQKKKEKILSSLAEKTQSPYQESLLQKTRDNQVML----KE 194
                          170       180
                   ....*....|....*....|...
gi 1242862604  834 LALQAQIAAftEQKEHMQRLEKT 856
Cdd:pfam15397  195 IEQFREFID--ELEEEIPKLKAE 215
mukB PRK04863
chromosome partition protein MukB;
591-846 5.73e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.10  E-value: 5.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  591 DKISDLIERNQRYVEQSN---LMMEKRNNSLQTAteNTQ-AKVTEELAAATAQVSHLQlkmtAHQK-KETELQLqltdnl 665
Cdd:PRK04863   438 DNAEDWLEEFQAKEQEATeelLSLEQKLSVAQAA--HSQfEQAYQLVRKIAGEVSRSE----AWDVaRELLRRL------ 505
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  666 KETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSlEEELTDLRAEKTSLEKNLSERKKKSAQERCQA 745
Cdd:PRK04863   506 REQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-EDELEQLQEELEARLESLSESVSEARERRMAL 584
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  746 EAemdeirksHQEELD-RLRQLLKKARV-STDQAAAEQLtlaqaELQSQWEAKCEQLLASARDEHLQQYREVCAQRDAHQ 823
Cdd:PRK04863   585 RQ--------QLEQLQaRIQRLAARAPAwLAAQDALARL-----REQSGEEFEDSQDVTEYMQQLLERERELTVERDELA 651
                          250       260
                   ....*....|....*....|...
gi 1242862604  824 QKLALLQDECLALQAQIAAFTEQ 846
Cdd:PRK04863   652 ARKQALDEEIERLSQPGGSEDPR 674
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
569-771 6.41e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 40.80  E-value: 6.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  569 IQENERLKQEllekssrieeQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTatentqakVTEELAAATAQVSHLQLKMT 648
Cdd:TIGR00606  417 LQSKERLKQE----------QADEIRDEKKGLGRTIELKKEILEKKQEELKF--------VIKELQQLEGSSDRILELDQ 478
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  649 AHQKKETELQLQLTDNLKETDLLR-GHVTRLQADLSELREASEQTQTKFKSEKQSRRQLEL------------------- 708
Cdd:TIGR00606  479 ELRKAERELSKAEKNSLTETLKKEvKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMltkdkmdkdeqirkiksrh 558
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  709 --KVTSL------------------------EEELTDLRAEKTSLEKNL----SERKKKSAQERCQAEAEMDEIRKSHQE 758
Cdd:TIGR00606  559 sdELTSLlgyfpnkkqledwlhskskeinqtRDRLAKLNKELASLEQNKnhinNELESKEEQLSSYEDKLFDVCGSQDEE 638
                          250
                   ....*....|....
gi 1242862604  759 -ELDRLRQLLKKAR 771
Cdd:TIGR00606  639 sDLERLKEEIEKSS 652
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
614-772 6.71e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 225288 [Multi-domain]  Cd Length: 652  Bit Score: 40.46  E-value: 6.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  614 RNNSLQTATENTQAKvtEELAAATAQVSHLQLKMTAHQKKETELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQ 693
Cdd:COG2433    386 RGYPLAEALSKVKEE--ERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  694 TKFKSEKQSRRQLELK---VTSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQL--LK 768
Cdd:COG2433    464 REVRDKVRKDREIRARdrrIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEygIK 543

                   ....
gi 1242862604  769 KARV 772
Cdd:COG2433    544 EGDV 547
MscK COG3264
Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];
610-866 6.82e-03

Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225803 [Multi-domain]  Cd Length: 835  Bit Score: 40.83  E-value: 6.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  610 MMEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKMTAHQKKETELQLQLTDNLKETdllrghVTRLQADLSELREAS 689
Cdd:COG3264      1 LALAGNNVLQELLQSRRELLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAEL------IQQELAINDQLSQAL 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  690 EQTQTKFKSEKQSRRQL-ELKVtSLEEELTDLRAEKTSLEKNLSERKKKSAQERCQAEAEMDEIRKSHQEELDRLRQLlk 768
Cdd:COG3264     75 NQQTERLNALASDDRQLaNLLL-QLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAE-- 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  769 KARVSTDQAAAEQLTLAQAE-LQSQWEAKCEQLlasarDEHLQQYREVcaqrdahqqKLALLQDECLALQAQIAAFTEQK 847
Cdd:COG3264    152 KAYINALEGQAEQLTAEVRDiLDQILDTRRELL-----NSLLSQREAI---------SLQLNQQQLSAASDELRSLLHQQ 217
                          250
                   ....*....|....*....
gi 1242862604  848 EHMQRLEKTKSQAPAGRAA 866
Cdd:COG3264    218 SFWVSFAWPKAFPQALRAL 236
ADIP pfam11559
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at ...
671-769 6.97e-03

Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.


Pssm-ID: 431934 [Multi-domain]  Cd Length: 151  Bit Score: 38.45  E-value: 6.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  671 LRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQercqaeaemd 750
Cdd:pfam11559   64 LEAEIERLQSKIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEELQRLKNALQQIKTQFAH---------- 133
                           90
                   ....*....|....*....
gi 1242862604  751 EIRKsHQEELDRLRQLLKK 769
Cdd:pfam11559  134 EVKK-RDREIEKLKERLAQ 151
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
601-859 7.35e-03

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 40.55  E-value: 7.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  601 QRYVEQSNLMMEKRNNSLQT---ATENTQAKVTEELAAATAQVSHLQLKMTAHQkketelqlqltdnlketdlLRGHVTR 677
Cdd:PRK10246   238 AQQQQQQSLNWLTRLDELQQeasRRQQALQQALAAEEKAQPQLAALSLAQPARQ-------------------LRPHWER 298
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  678 LQ---ADLSELREASEQTQTKFKSEKQSRRQLElkvTSLEEELTDLRAEKTSLEKNLSE--RKKKSAQERCQAEAEMDEi 752
Cdd:PRK10246   299 IQeqsAALAHTRQQIEEVNTRLQSTMALRARIR---HHAAKQSAELQAQQQSLNTWLAEhdRFRQWNNELAGWRAQFSQ- 374
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  753 RKSHQEELDRLRQLLKKARVSTDQAAAEQLTL-----AQAELQSQWEAKCEQLLASARDEHLQQyrevcaqrdahQQKLA 827
Cdd:PRK10246   375 QTSDREQLRQWQQQLTHAEQKLNALPAITLTLtadevAAALAQHAEQRPLRQRLVALHGQIVPQ-----------QKRLA 443
                          250       260       270
                   ....*....|....*....|....*....|..
gi 1242862604  828 LLQDECLALQAQIAAFTEQKEHMQRLEKTKSQ 859
Cdd:PRK10246   444 QLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQ 475
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
630-800 7.40e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 40.53  E-value: 7.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  630 TEELAAATaqvshlQLKMTAHQKKEtELQLQLTDNLKETDLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELK 709
Cdd:pfam01576  846 QEDLAAAE------RARRQAQQERD-ELAEEIASGNSGKSALLDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKLTLQ 918
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  710 VTSLEEELTdlrAEKTSLEKNLSerkkksaqERCQAEAEMDEIRKSHQEELDRLRQLLKKArvstdqAAAEQLTLAQAEL 789
Cdd:pfam01576  919 VEQLTTELA---AERSTSQKSES--------ARQQLERQNKELKAKLQEMEGTVKSKYKSS------IAALEAKIAQLEE 981
                          170
                   ....*....|.
gi 1242862604  790 QSQWEAKCEQL 800
Cdd:pfam01576  982 QLEQESRERQA 992
FPP pfam05911
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ...
578-742 8.37e-03

Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.


Pssm-ID: 428669 [Multi-domain]  Cd Length: 860  Bit Score: 40.44  E-value: 8.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  578 ELLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEKRNNSLQTATEN-----TQAKVTEELAAataqvsHLQLKMTAHQK 652
Cdd:pfam05911  665 EIPSDGPLVSGSNDLKTEENKRLKEEFEQLKSEKENLEVELARCTENlestkSQLQESEQLIA------ELRSELASLKE 738
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  653 KETELQLQLtDNLKET-DLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTdlRAEKTSLEKNL 731
Cdd:pfam05911  739 SNSLAETQL-KCMAESyEDLETRLTELEAELNELQQKIEALEVELEEEKNSHEELLAKCLELQEQLE--RNEKKESSNCD 815
                          170
                   ....*....|..
gi 1242862604  732 -SERKKKSAQER 742
Cdd:pfam05911  816 aAQEDKKLQQEK 827
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
512-778 8.49e-03

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 40.35  E-value: 8.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  512 QHNTEIRMAVNKVADKMDHLMTKVEELQKHSSGNSML------LPSMSVTMETSM--IMSNIQRIIQENERLKQELLEKS 583
Cdd:COG5185    264 KFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLrekwraLKSDSNKYENYVnaMKQKSQEWPGKLEKLKSEIELKE 343
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  584 SRIEEQNDKISDL--IERNQRY-VEQSNLMMEKRNnslqtatentqaKVTEELAAATAQVSHLqLKMTAHQKKETELQLQ 660
Cdd:COG5185    344 EEIKALQSNIDELhkQLRKQGIsTEQFELMNQERE------------KLTRELDKINIQSDKL-TKSVKSRKLEAQGIFK 410
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  661 -LTDNLKETDLLRGHVTRLQADL------SELREASEQTQTKFKSEKQSRRQLELKVTS---------------LEE--- 715
Cdd:COG5185    411 sLEKTLRQYDSLIQNITRSRSQIghnvndSSLKINIEQLFPKGSGINESIKKSILELNDeiqerikteenksitLEEdik 490
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  716 ELTDLRAEKTS----LEKNLSE-------RKKKSAQERCQAEAEMDEIRK--------SHQEELDrLRQLLKKARVSTDQ 776
Cdd:COG5185    491 NLKHDINELTQilekLELELSEanskfelSKEENERELVAQRIEIEKLEKelndlnllSKTSILD-AEQLVQSTEIKLDE 569

                   ..
gi 1242862604  777 AA 778
Cdd:COG5185    570 LK 571
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
564-867 8.49e-03

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 40.55  E-value: 8.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  564 NIQRIIQENERLKQELLEKSSRIEEQNDKISD---LIERNQRYVEqsnlmMEKRNNSLQTATENTQAKVTEELAAATAQV 640
Cdd:PRK10246   448 AIQNVTQEQTQRNAALNEMRQRYKEKTQQLADvktICEQEARIKD-----LEAQRAQLQAGQPCPLCGSTSHPAVEAYQA 522
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  641 shlqLKMTAHQKKETELQLQLTDNLKETDLLRGHV----TRLQADLSELREAS--EQTQTKFKSEKQSRRQLELKVtslE 714
Cdd:PRK10246   523 ----LEPGVNQSRLDALEKEVKKLGEEGAALRGQLdaltKQLQRDESEAQSLRqeEQALTQQWQAVCASLNITLQP---Q 595
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  715 EELTDLRAEKTSLEKNLSErkkksAQERCQAEAEMDEirksHQEELDRLRQLLKKARVS-TDQAAAEQLTLAQAELQSQW 793
Cdd:PRK10246   596 DDIQPWLDAQEEHERQLRL-----LSQRHELQGQIAA----HNQQIIQYQQQIEQRQQQlLTALAGYALTLPQEDEEASW 666
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  794 eakceqllASARDEHLQQYREVCAQRDAHQQKLALLQ----------------------------DECLALQAQIAAFTE 845
Cdd:PRK10246   667 --------LATRQQEAQSWQQRQNELTALQNRIQQLTplletlpqsddlphseetvaldnwrqvhEQCLSLHSQLQTLQQ 738
                          330       340
                   ....*....|....*....|...
gi 1242862604  846 QK-EHMQRLEKTKSQAPAGRAAA 867
Cdd:PRK10246   739 QDvLEAQRLQKAQAQFDTALQAS 761
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
509-759 8.79e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 40.34  E-value: 8.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  509 EARQHNTEIRMAVNKVADKMDHLMTKVEELQKHSSGNSMLLPSMSVTMETSMIMSNIQRIIQENERLKQELLEKSSRIEE 588
Cdd:TIGR00618  622 QPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQ 701
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  589 QNDKISDL---IERNQRYVEQSNLMMEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLkmtAHQKKETELQLQLTDNL 665
Cdd:TIGR00618  702 CQTLLRELethIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTE---AHFNNNEEVTAALQTGA 778
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  666 KETDLLRGHVTR---LQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSERKKKSAQER 742
Cdd:TIGR00618  779 ELSHLAAEIQFFnrlREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECS 858
                          250
                   ....*....|....*..
gi 1242862604  743 CQAEAEMDEIRKSHQEE 759
Cdd:TIGR00618  859 KQLAQLTQEQAKIIQLS 875
CENP-F_leu_zip pfam10473
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ...
658-790 8.88e-03

Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.


Pssm-ID: 431301 [Multi-domain]  Cd Length: 140  Bit Score: 38.04  E-value: 8.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  658 QLQLTDNLKET----DLLRGHVTRLQADLSELREASEQTQTKFKSEKQSRRQLELKVTSLEEELTDLRAEKTslekNLSE 733
Cdd:pfam10473    5 QLHVLEKLKESerkaDSLKDKVENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELDLV----TLRS 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1242862604  734 RKKKSAQERCQAEAEMDEIRKSHqEELDRLRQLLKKARVSTDQAAAEQLTLAQAELQ 790
Cdd:pfam10473   81 EKENLTKELQKKQERVSELESLN-SSLENLLEEKEQEKVQMKEESKTAVEMLQTQLK 136
PHA03247 PHA03247
large tegument protein UL36; Provisional
302-495 9.18e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 9.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  302 SSRDSAAPSPIPASDSLSADPVVTPLPLPLKPGEPGlrskSNSLSEQLTVNSNPDTVKAKLISRMAKMGQPMLPILPPQ- 380
Cdd:PHA03247  2607 DPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHP----PPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQr 2682
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  381 ----------------LDSNDSETEDATVLRGAGQSLVTPSIQPSLQPAHPVLPqmASQAPQPSGSGLQTPSAALMQAvs 444
Cdd:PHA03247  2683 prrraarptvgsltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALP--AAPAPPAVPAGPATPGGPARPA-- 2758
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1242862604  445 ldSHSAVSGNAQNFQPYAGVQAYAYPQTPSVTSQLQPVRPLYPAPLSQAPH 495
Cdd:PHA03247  2759 --RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP 2807
F-BAR_GAS7 cd07649
The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein ...
579-825 9.66e-03

The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7; F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.


Pssm-ID: 153333 [Multi-domain]  Cd Length: 233  Bit Score: 39.23  E-value: 9.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  579 LLEKSSRIEEQNDKISDLIERNQRYVEQSNLMMEK-RNNSLQTATENTQAKVTEELAAATAQVSHLQLKMTAHQKKETEL 657
Cdd:cd07649     10 LLQKQLKGKQMQKEMAEFIRERIKIEEEYAKNLSKlSQSSLAAQEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEK 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  658 QL--QLTDNLKETDLLRGHVTRLQADLSeLREASEQTQTKFKSEKQsrRQLELKVTSLEEELTDLRaektslEKNLSERK 735
Cdd:cd07649     90 PLlnFRENFKKDMKKLDHHIADLRKQLA-SRYAAVEKARKALLERQ--KDLEGKTQQLEIKLSNKT------EEDIKKAR 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862604  736 KKSAQercqaeaemdeirksHQEELDRLRQLLKKARvstdQAAAEQLTLAQAELQSQWEAKCEQLlasarDEHLQQYREV 815
Cdd:cd07649    161 RKSTQ---------------AGDDLMRCVDLYNQAQ----SKWFEEMVTTSLELERLEVERIEMI-----RQHLCQYTQL 216
                          250
                   ....*....|
gi 1242862604  816 CAQRDAHQQK 825
Cdd:cd07649    217 RHETDMFNQS 226
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH