|
Name |
Accession |
Description |
Interval |
E-value |
| Pannexin_like |
pfam12534 |
Pannexin-like TM region of LRRC8; Pannexin_like is a family of the four transmembrane domains ... |
1-373 |
0e+00 |
|
Pannexin-like TM region of LRRC8; Pannexin_like is a family of the four transmembrane domains of metazoan leucine-rich-repeat-containing 8 proteins. These four TMs associate into hexamers resulting in homo- or heteromeric channels that connect the cytosol to the extracellular space. The family is found in association with pfam00560.
Pssm-ID: 463622 Cd Length: 345 Bit Score: 590.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 1 MFTLTEVASLNDVQPTYRILKPWWDVFMDYLGLVMLMLAIFAGTMQITKDQVACLPFLEErskiesttpytthgsmytst 80
Cdd:pfam12534 1 MFPVTELRSFNEQQPAYRILKPWWDVFMDYLSVAMLMIAVFGGTLQLTQDKVVCLPCLES-------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 81 sslgtaPLATQDLPDSVVHELHHTEPTTPARSQSimTATEPQPKGRRTNLDYQQYIFVNQMCYHVALPWYSKYFPYLVLI 160
Cdd:pfam12534 61 ------PPSTASLDDSYANSLSPTQSAPTVSSPS--ASMIPEPKGRKTNLDRQQYVFINQVCYEKALHWYSKYFPYLVLI 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 161 HTILLMVSSNFWFKYPKTSSKIEHFVSILGRCFESPWTTKALSETACEDSEESKQRIIaGQTSSKQVSTDSQEEATSPTS 240
Cdd:pfam12534 133 HTLIFMVSSNFWFKFPGTSSKIEHFVSILGKCFDSPWTTRALSETSGEDSEEKKQRLE-GNTVLPKVSSSSSLSSSDESA 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 241 PMLINTEVTFSTERMVPEGQS-LTILDKKDGEQAKALFEKVRTFRAHVEDSDFIYNLYVAQTSVKALKLIFILCYTSTFT 319
Cdd:pfam12534 212 PLTRTPSVKSSPEKPVVEVPStVSVLDKKEGEQAKALFEKVKKFRAHVEESDIIYKMYVAQTVLKVLKFLLILSYTSYLV 291
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1249019940 320 SEIKFKHVCKPEIEHLTGYDEFFCTHNMAFMLRKLLFTFMAIISLYGLVCMYAL 373
Cdd:pfam12534 292 SNISFTVDCKPDIEALTGYSRFYCNHNLAFLFSKLLVFYISLVGVYGLLCLYTL 345
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
567-814 |
5.19e-36 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 141.22 E-value: 5.19e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 567 MIGLESLKELRHLKMLYLKSNLNKIPTNLAELSPHLVKLVVHNDGTKVVVLNSLKKMANLVELELHNCDLE-RIPHAIFS 645
Cdd:COG4886 15 LLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLlLGLTDLGD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 646 LINLQELDLKSNSirtieeiiSFQHLKRLTCLKLWHNRIIAIPQSISHVKNIEILHLSYNKLETLPAALFYLPKLRHLDL 725
Cdd:COG4886 95 LTNLTELDLSGNE--------ELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 726 SHNSISLIPNEVGLLQSLQYFDITDNKVEILPKQLFRCTKLRVLCLGNNGITVLPEAVGQLTQLTQLELKGNCLGHLPfQ 805
Cdd:COG4886 167 SNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-E 245
|
....*....
gi 1249019940 806 LSQCQHLKR 814
Cdd:COG4886 246 LGNLTNLEE 254
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
538-812 |
1.93e-15 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 81.05 E-value: 1.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 538 VAEIPPWLYLLRSLRELYL-VGGLSSEHNKMIGleSLKELRHLKMLYlkSNLN-KIPTNLAELSpHLVKLVVHNDGTKVV 615
Cdd:PLN00113 201 VGQIPRELGQMKSLKWIYLgYNNLSGEIPYEIG--GLTSLNHLDLVY--NNLTgPIPSSLGNLK-NLQYLFLYQNKLSGP 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 616 VLNSLKKMANLVELELHNCDLE-RIPHAIFSLINLQELDLKSNSIR-TIEEIISfqHLKRLTCLKLWHNRIIA-IPQSIS 692
Cdd:PLN00113 276 IPPSIFSLQKLISLDLSDNSLSgEIPELVIQLQNLEILHLFSNNFTgKIPVALT--SLPRLQVLQLWSNKFSGeIPKNLG 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 693 HVKNIEILHLSYNKL-----ETL--------------------PAALFYLPKLRHLDLSHNSIS-LIPNEVGLLQSLQYF 746
Cdd:PLN00113 354 KHNNLTVLDLSTNNLtgeipEGLcssgnlfklilfsnslegeiPKSLGACRSLRRVRLQDNSFSgELPSEFTKLPLVYFL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 747 DITDNKVE-------------------------ILPkQLFRCTKLRVLCLGNNGIT-VLPEAVGQLTQLTQLELKGNCL- 799
Cdd:PLN00113 434 DISNNNLQgrinsrkwdmpslqmlslarnkffgGLP-DSFGSKRLENLDLSRNQFSgAVPRKLGSLSELMQLKLSENKLs 512
|
330
....*....|...
gi 1249019940 800 GHLPFQLSQCQHL 812
Cdd:PLN00113 513 GEIPDELSSCKKL 525
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
625-803 |
7.22e-15 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 74.44 E-value: 7.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 625 NLVELELHNCDLERIPHaIFSLINLQELDLKSNSIRTIEeiiSFQHLKRLTCLKLWHNRiiaipqsISHV------KNIE 698
Cdd:cd21340 25 NLKVLYLYDNKITKIEN-LEFLTNLTHLYLQNNQIEKIE---NLENLVNLKKLYLGGNR-------ISVVeglenlTNLE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 699 ILHLSYNKL---ETL---PAALFYL-PKLRHLDLSHNSISlIPNEVGLLQSLQYFDITDNKVEilpkqlfrctklrvlcl 771
Cdd:cd21340 94 ELHIENQRLppgEKLtfdPRSLAALsNSLRVLNISGNNID-SLEPLAPLRNLEQLDASNNQIS----------------- 155
|
170 180 190
....*....|....*....|....*....|..
gi 1249019940 772 gnnGITVLPEAVGQLTQLTQLELKGNCLGHLP 803
Cdd:cd21340 156 ---DLEELLDLLSSWPSLRELDLTGNPVCKKP 184
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
673-730 |
5.18e-10 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 55.99 E-value: 5.18e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 673 RLTCLKLWHNRIIAIPQSI-SHVKNIEILHLSYNKLETL-PAALFYLPKLRHLDLSHNSI 730
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAfKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Pannexin_like |
pfam12534 |
Pannexin-like TM region of LRRC8; Pannexin_like is a family of the four transmembrane domains ... |
1-373 |
0e+00 |
|
Pannexin-like TM region of LRRC8; Pannexin_like is a family of the four transmembrane domains of metazoan leucine-rich-repeat-containing 8 proteins. These four TMs associate into hexamers resulting in homo- or heteromeric channels that connect the cytosol to the extracellular space. The family is found in association with pfam00560.
Pssm-ID: 463622 Cd Length: 345 Bit Score: 590.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 1 MFTLTEVASLNDVQPTYRILKPWWDVFMDYLGLVMLMLAIFAGTMQITKDQVACLPFLEErskiesttpytthgsmytst 80
Cdd:pfam12534 1 MFPVTELRSFNEQQPAYRILKPWWDVFMDYLSVAMLMIAVFGGTLQLTQDKVVCLPCLES-------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 81 sslgtaPLATQDLPDSVVHELHHTEPTTPARSQSimTATEPQPKGRRTNLDYQQYIFVNQMCYHVALPWYSKYFPYLVLI 160
Cdd:pfam12534 61 ------PPSTASLDDSYANSLSPTQSAPTVSSPS--ASMIPEPKGRKTNLDRQQYVFINQVCYEKALHWYSKYFPYLVLI 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 161 HTILLMVSSNFWFKYPKTSSKIEHFVSILGRCFESPWTTKALSETACEDSEESKQRIIaGQTSSKQVSTDSQEEATSPTS 240
Cdd:pfam12534 133 HTLIFMVSSNFWFKFPGTSSKIEHFVSILGKCFDSPWTTRALSETSGEDSEEKKQRLE-GNTVLPKVSSSSSLSSSDESA 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 241 PMLINTEVTFSTERMVPEGQS-LTILDKKDGEQAKALFEKVRTFRAHVEDSDFIYNLYVAQTSVKALKLIFILCYTSTFT 319
Cdd:pfam12534 212 PLTRTPSVKSSPEKPVVEVPStVSVLDKKEGEQAKALFEKVKKFRAHVEESDIIYKMYVAQTVLKVLKFLLILSYTSYLV 291
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1249019940 320 SEIKFKHVCKPEIEHLTGYDEFFCTHNMAFMLRKLLFTFMAIISLYGLVCMYAL 373
Cdd:pfam12534 292 SNISFTVDCKPDIEALTGYSRFYCNHNLAFLFSKLLVFYISLVGVYGLLCLYTL 345
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
567-814 |
5.19e-36 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 141.22 E-value: 5.19e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 567 MIGLESLKELRHLKMLYLKSNLNKIPTNLAELSPHLVKLVVHNDGTKVVVLNSLKKMANLVELELHNCDLE-RIPHAIFS 645
Cdd:COG4886 15 LLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLlLGLTDLGD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 646 LINLQELDLKSNSirtieeiiSFQHLKRLTCLKLWHNRIIAIPQSISHVKNIEILHLSYNKLETLPAALFYLPKLRHLDL 725
Cdd:COG4886 95 LTNLTELDLSGNE--------ELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 726 SHNSISLIPNEVGLLQSLQYFDITDNKVEILPKQLFRCTKLRVLCLGNNGITVLPEAVGQLTQLTQLELKGNCLGHLPfQ 805
Cdd:COG4886 167 SNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-E 245
|
....*....
gi 1249019940 806 LSQCQHLKR 814
Cdd:COG4886 246 LGNLTNLEE 254
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
477-761 |
6.65e-23 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 102.32 E-value: 6.65e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 477 DITELEILKLELIPEVRISAKISQMINLQELHLYHSPAKVEHTaftflrdHLKCLHVKFTDVAEIPPWLYLLRSLRELYL 556
Cdd:COG4886 71 LLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLT-------NLESLDLSGNQLTDLPEELANLTNLKELDL 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 557 vgglssEHNKMIGL-ESLKELRHLKMLYLKSN-LNKIPTNLAELsPHLVKLVVHNdgTKVVVL-NSLKKMANLVELELHN 633
Cdd:COG4886 144 ------SNNQLTDLpEPLGNLTNLKSLDLSNNqLTDLPEELGNL-TNLKELDLSN--NQITDLpEPLGNLTNLEELDLSG 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 634 CDLERIPHAIFSLINLQELDLKSNSIRTIEEIisfQHLKRLTCLKLWHNRIIAIPQSiSHVKNIEILHLSYNKLETLPAA 713
Cdd:COG4886 215 NQLTDLPEPLANLTNLETLDLSNNQLTDLPEL---GNLTNLEELDLSNNQLTDLPPL-ANLTNLKTLDLSNNQLTDLKLK 290
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1249019940 714 LFYLPKLRHLDLSHNSISLIPNEVGLLQSLQYFDITDNKVEILPKQLF 761
Cdd:COG4886 291 ELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLT 338
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
538-812 |
1.93e-15 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 81.05 E-value: 1.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 538 VAEIPPWLYLLRSLRELYL-VGGLSSEHNKMIGleSLKELRHLKMLYlkSNLN-KIPTNLAELSpHLVKLVVHNDGTKVV 615
Cdd:PLN00113 201 VGQIPRELGQMKSLKWIYLgYNNLSGEIPYEIG--GLTSLNHLDLVY--NNLTgPIPSSLGNLK-NLQYLFLYQNKLSGP 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 616 VLNSLKKMANLVELELHNCDLE-RIPHAIFSLINLQELDLKSNSIR-TIEEIISfqHLKRLTCLKLWHNRIIA-IPQSIS 692
Cdd:PLN00113 276 IPPSIFSLQKLISLDLSDNSLSgEIPELVIQLQNLEILHLFSNNFTgKIPVALT--SLPRLQVLQLWSNKFSGeIPKNLG 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 693 HVKNIEILHLSYNKL-----ETL--------------------PAALFYLPKLRHLDLSHNSIS-LIPNEVGLLQSLQYF 746
Cdd:PLN00113 354 KHNNLTVLDLSTNNLtgeipEGLcssgnlfklilfsnslegeiPKSLGACRSLRRVRLQDNSFSgELPSEFTKLPLVYFL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 747 DITDNKVE-------------------------ILPkQLFRCTKLRVLCLGNNGIT-VLPEAVGQLTQLTQLELKGNCL- 799
Cdd:PLN00113 434 DISNNNLQgrinsrkwdmpslqmlslarnkffgGLP-DSFGSKRLENLDLSRNQFSgAVPRKLGSLSELMQLKLSENKLs 512
|
330
....*....|...
gi 1249019940 800 GHLPFQLSQCQHL 812
Cdd:PLN00113 513 GEIPDELSSCKKL 525
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
625-803 |
7.22e-15 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 74.44 E-value: 7.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 625 NLVELELHNCDLERIPHaIFSLINLQELDLKSNSIRTIEeiiSFQHLKRLTCLKLWHNRiiaipqsISHV------KNIE 698
Cdd:cd21340 25 NLKVLYLYDNKITKIEN-LEFLTNLTHLYLQNNQIEKIE---NLENLVNLKKLYLGGNR-------ISVVeglenlTNLE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 699 ILHLSYNKL---ETL---PAALFYL-PKLRHLDLSHNSISlIPNEVGLLQSLQYFDITDNKVEilpkqlfrctklrvlcl 771
Cdd:cd21340 94 ELHIENQRLppgEKLtfdPRSLAALsNSLRVLNISGNNID-SLEPLAPLRNLEQLDASNNQIS----------------- 155
|
170 180 190
....*....|....*....|....*....|..
gi 1249019940 772 gnnGITVLPEAVGQLTQLTQLELKGNCLGHLP 803
Cdd:cd21340 156 ---DLEELLDLLSSWPSLRELDLTGNPVCKKP 184
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
588-806 |
4.03e-14 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 76.66 E-value: 4.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 588 LNKIPTNLAElspHLVKLVVHNDGTKVVVLNSlkkMANLVELELHNCDLERIPHAIFSLInlQELDLKSNSIRTIEEiis 667
Cdd:PRK15370 190 LTTIPACIPE---QITTLILDNNELKSLPENL---QGNIKTLYANSNQLTSIPATLPDTI--QEMELSINRITELPE--- 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 668 fqHL-KRLTCLKLWHNRIIAIPQSIShvKNIEILHLSYNKLETLPAalfYLPK-LRHLDLSHNSISLIPNEvgLLQSLQY 745
Cdd:PRK15370 259 --RLpSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPA---HLPSgITHLNVQSNSLTALPET--LPPGLKT 329
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1249019940 746 FDITDNKVEILPKQLfrCTKLRVLCLGNNGITVLPEAVGqlTQLTQLELKGNCLGHLPFQL 806
Cdd:PRK15370 330 LEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL 386
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
545-751 |
2.83e-10 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 60.96 E-value: 2.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 545 LYLLRSLRELYLVGglssehNKMIGLESLKELRHLKMLYLKSN-LNKIPtNLAELsPHLVKLvvHNDGTKVVVLNSLKKM 623
Cdd:cd21340 20 LSLCKNLKVLYLYD------NKITKIENLEFLTNLTHLYLQNNqIEKIE-NLENL-VNLKKL--YLGGNRISVVEGLENL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 624 ANLVELELHNCDL---ERI---PHAIFSLIN-LQELDLKSNSIRTIEEiisFQHLKRLTCLKLWHNRIiaipQSISHVKN 696
Cdd:cd21340 90 TNLEELHIENQRLppgEKLtfdPRSLAALSNsLRVLNISGNNIDSLEP---LAPLRNLEQLDASNNQI----SDLEELLD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1249019940 697 ieilhlsynkletlpaALFYLPKLRHLDLSHNSISLIPNE----VGLLQSLQYFD---ITDN 751
Cdd:cd21340 163 ----------------LLSSWPSLRELDLTGNPVCKKPKYrdkiILASKSLEVLDgkeITDT 208
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
573-800 |
5.03e-10 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 62.50 E-value: 5.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 573 LKELRHLKMLYLKSNLNKIPTNLAELSPHLVKLVVHNDGTKVVVLNSLKKMaNLVELELHNCDLERIPHAIFSLINLQEL 652
Cdd:COG5238 135 LALPRRINLIQVLKDPLGGNAVHLLGLAARLGLLAAISMAKALQNNSVETV-YLGCNQIGDEGIEELAEALTQNTTVTTL 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 653 DLKSNSI--RTIEEIIS-FQHLKRLTCLKLWHNRI-----IAIPQSISHVKNIEILHLSYNKL-----ETLPAALFYLPK 719
Cdd:COG5238 214 WLKRNPIgdEGAEILAEaLKGNKSLTTLDLSNNQIgdegvIALAEALKNNTTVETLYLSGNQIgaegaIALAKALQGNTT 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 720 LRHLDLSHNsislipnevgllqslqyfDITDNKVEILPKQLFRCTKLRVLCLGNNGITV-----LPEAVGQLTQLTQLEL 794
Cdd:COG5238 294 LTSLDLSVN------------------RIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAqgaiaLAKALQENTTLHSLDL 355
|
....*.
gi 1249019940 795 KGNCLG 800
Cdd:COG5238 356 SDNQIG 361
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
673-730 |
5.18e-10 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 55.99 E-value: 5.18e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 673 RLTCLKLWHNRIIAIPQSI-SHVKNIEILHLSYNKLETL-PAALFYLPKLRHLDLSHNSI 730
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAfKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
620-814 |
6.60e-10 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 62.11 E-value: 6.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 620 LKKMANLVELELHNCDL-ERIPHAIFSLI----NLQELDLKSNSIrTIEEIISF-QHLKR---LTCLKLWHNRI-----I 685
Cdd:COG5238 232 LKGNKSLTTLDLSNNQIgDEGVIALAEALknntTVETLYLSGNQI-GAEGAIALaKALQGnttLTSLDLSVNRIgdegaI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 686 AIPQSISHVKNIEILHLSYNKL-----ETLPAALFYLPKLRHLDLSHNSISlipnevgllqslqyfditDNKVEILPKQL 760
Cdd:COG5238 311 ALAEGLQGNKTLHTLNLAYNGIgaqgaIALAKALQENTTLHSLDLSDNQIG------------------DEGAIALAKYL 372
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 761 FRCTKLRVLCLGNNGITVL-PEAVG---QLTQLTQLELKGNCLGHLPFQL--SQCQHLKR 814
Cdd:COG5238 373 EGNTTLRELNLGKNNIGKQgAEALIdalQTNRLHTLILDGNLIGAEAQQRleQLLERIKS 432
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
638-828 |
1.86e-07 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 54.85 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 638 RIPHAIFSLINLQELDLKSNSIR-TIEEIIsFQHLKRLTCLKLWHNRIIAiPQSISHVKNIEILHLSYNKLE-TLPAALF 715
Cdd:PLN00113 84 KISSAIFRLPYIQTINLSNNQLSgPIPDDI-FTTSSSLRYLNLSNNNFTG-SIPRGSIPNLETLDLSNNMLSgEIPNDIG 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 716 YLPKLRHLDLSHNSIS-LIPNEVGLLQSLQYFDITDNK-VEILPKQLFRCTKLRVLCLGNNGIT-VLPEAVGQLTQLTQL 792
Cdd:PLN00113 162 SFSSLKVLDLGGNVLVgKIPNSLTNLTSLEFLTLASNQlVGQIPRELGQMKSLKWIYLGYNNLSgEIPYEIGGLTSLNHL 241
|
170 180 190
....*....|....*....|....*....|....*..
gi 1249019940 793 ELKGNCL-GHLPFQLSQCQHLKRnLFVVEEHLFDTLP 828
Cdd:PLN00113 242 DLVYNNLtGPIPSSLGNLKNLQY-LFLYQNKLSGPIP 277
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
544-815 |
3.10e-07 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 53.13 E-value: 3.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 544 WLYLLRSLRELYLVG----GLSSEHNKMIGleslKELRHlkmlylksnlnkiPTNLAELSPHLVKLVVHNDGTKVVvLNS 619
Cdd:cd00116 15 ATELLPKLLCLQVLRlegnTLGEEAAKALA----SALRP-------------QPSLKELCLSLNETGRIPRGLQSL-LQG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 620 LKKMANLVELELHNC----DLERIPHAIFSLINLQELDLKSNSI-RTIEEII--SFQHLK-RLTCLKLWHNR-------- 683
Cdd:cd00116 77 LTKGCGLQELDLSDNalgpDGCGVLESLLRSSSLQELKLNNNGLgDRGLRLLakGLKDLPpALEKLVLGRNRlegascea 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 684 -------------------------IIAIPQSISHVKNIEILHLSYNKLE-----TLPAALFYLPKLRHLDLSHNSISli 733
Cdd:cd00116 157 lakalranrdlkelnlanngigdagIRALAEGLKANCNLEVLDLNNNGLTdegasALAETLASLKSLEVLNLGDNNLT-- 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 734 pnEVGLLqslqyfditdnkvEILPKQLFRCTKLRVLCLGNNGITV-----LPEAVGQLTQLTQLELKGNCLGH-LPFQLS 807
Cdd:cd00116 235 --DAGAA-------------ALASALLSPNISLLTLSLSCNDITDdgakdLAEVLAEKESLLELDLRGNKFGEeGAQLLA 299
|
....*...
gi 1249019940 808 QCQHLKRN 815
Cdd:cd00116 300 ESLLEPGN 307
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
438-751 |
3.56e-07 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 54.08 E-value: 3.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 438 ISLNH-EWTFEKLRQHVTSNNQDKQELH-LF----MLPG-LPNAVFDITELEILKLE------LIPEVrisakISQMINL 504
Cdd:PLN00113 236 TSLNHlDLVYNNLTGPIPSSLGNLKNLQyLFlyqnKLSGpIPPSIFSLQKLISLDLSdnslsgEIPEL-----VIQLQNL 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 505 QELHLY--HSPAKVEHTAFTFLRdhLKCLHV---KFTdvAEIPPWLYLLRSLRELylvgGLSSehNKMIGL--ESLKELR 577
Cdd:PLN00113 311 EILHLFsnNFTGKIPVALTSLPR--LQVLQLwsnKFS--GEIPKNLGKHNNLTVL----DLST--NNLTGEipEGLCSSG 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 578 HLKMLYLKSNL--NKIPTNLA-----------------ELSPHLVKLVVHN-----DGTKVVVLNSLK-KMANLVELEL- 631
Cdd:PLN00113 381 NLFKLILFSNSleGEIPKSLGacrslrrvrlqdnsfsgELPSEFTKLPLVYfldisNNNLQGRINSRKwDMPSLQMLSLa 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 632 HNCDLERIPHAiFSLINLQELDLKSNSIrtiEEII--SFQHLKRLTCLKLWHNRIIA-IPQSISHVKNIEILHLSYNKLE 708
Cdd:PLN00113 461 RNKFFGGLPDS-FGSKRLENLDLSRNQF---SGAVprKLGSLSELMQLKLSENKLSGeIPDELSSCKKLVSLDLSHNQLS 536
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1249019940 709 -TLPAALFYLPKLRHLDLSHNSIS-LIPNEVGLLQSLQYFDITDN 751
Cdd:PLN00113 537 gQIPASFSEMPVLSQLDLSQNQLSgEIPKNLGNVESLVQVNISHN 581
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
696-753 |
4.63e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 47.52 E-value: 4.63e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 696 NIEILHLSYNKLETLPAALFY-LPKLRHLDLSHNSISLI-PNEVGLLQSLQYFDITDNKV 753
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKgLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
625-684 |
6.52e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 47.13 E-value: 6.52e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1249019940 625 NLVELELHNCDLERI-PHAIFSLINLQELDLKSNSIRTIEEiISFQHLKRLTCLKLWHNRI 684
Cdd:pfam13855 2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLSP-GAFSGLPSLRYLDLSGNRL 61
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
423-745 |
1.62e-06 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 52.01 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 423 FGVFLSEVSENKLREISLNHEWTFEKLRQhVTSNNQDKQELHLFMLPGLPNAVFD-ITELEILKLEL--IPEvRISAKIS 499
Cdd:PRK15370 146 YELIWSEWVKEAPAKEAANREEAVQRMRD-CLKNNKTELRLKILGLTTIPACIPEqITTLILDNNELksLPE-NLQGNIK 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 500 QMiNLQELHLYHSPAKvehtaftfLRDHLKCLHVKFTDVAEIPPwlYLLRSLRELYLVgglsseHNKMIGL-ESL-KELR 577
Cdd:PRK15370 224 TL-YANSNQLTSIPAT--------LPDTIQEMELSINRITELPE--RLPSALQSLDLF------HNKISCLpENLpEELR 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 578 HLKMLylKSNLNKIPtnlAELSPHLVKLVVHNdgtkvvvlNSLKKMA-----NLVELELHNCDLERIPHAIFSliNLQEL 652
Cdd:PRK15370 287 YLSVY--DNSIRTLP---AHLPSGITHLNVQS--------NSLTALPetlppGLKTLEAGENALTSLPASLPP--ELQVL 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 653 DLKSNSIRTIEEIISfqhlKRLTCLKLWHNRIIAIPQSISHVknIEILHLSYNKLETLPAALFYL----PKLRHLDLSHN 728
Cdd:PRK15370 352 DVSKNQITVLPETLP----PTITTLDVSRNALTNLPENLPAA--LQIMQASRNNLVRLPESLPHFrgegPQPTRIIVEYN 425
|
330
....*....|....*....
gi 1249019940 729 SIS--LIPNEVGLLQSLQY 745
Cdd:PRK15370 426 PFSerTIQNMQRLMSSVGY 444
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
639-751 |
1.52e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 48.66 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 639 IPHAIFSLINLQELDLKSNSIRTieeiisfqhlkrltclklwhnriiAIPQSISHVKNIEILHLSYNKLE-TLPAALFYL 717
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIRG------------------------NIPPSLGSITSLEVLDLSYNSFNgSIPESLGQL 489
|
90 100 110
....*....|....*....|....*....|....*.
gi 1249019940 718 PKLRHLDLSHNSIS-LIPNEVG-LLQSLQYFDITDN 751
Cdd:PLN03150 490 TSLRILNLNGNSLSgRVPAALGgRLLHRASFNFTDN 525
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
733-803 |
1.11e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 45.96 E-value: 1.11e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1249019940 733 IPNEVGLLQSLQYFDITDNKVE-ILPKQLFRCTKLRVLCLGNNGIT-VLPEAVGQLTQLTQLELKGNCL-GHLP 803
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNGNSLsGRVP 507
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
625-813 |
1.15e-04 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 46.02 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 625 NLVELELHNCDLERIPHAIFSLINLQELDLKSNsiRTIEEIISFQHLKRLTCLKLWH-NRIIAIPQSISHVKNIEILHLS 703
Cdd:PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGS--KNLKEIPDLSMATNLETLKLSDcSSLVELPSSIQYLNKLEDLDMS 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 704 Y-NKLETLPA-----ALFYL-----PKLRH----------LDLSHNSISLIPNEVGlLQSLQYFDITDNKVEILPKQLFR 762
Cdd:PLN03210 690 RcENLEILPTginlkSLYRLnlsgcSRLKSfpdistniswLDLDETAIEEFPSNLR-LENLDELILCEMKSEKLWERVQP 768
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1249019940 763 CTKLRV--------LCLGNNGITV-LPEAVGQLTQLTQLELKgNC--LGHLP----------FQLSQCQHLK 813
Cdd:PLN03210 769 LTPLMTmlspsltrLFLSDIPSLVeLPSSIQNLHKLEHLEIE-NCinLETLPtginleslesLDLSGCSRLR 839
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
718-776 |
1.43e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 40.59 E-value: 1.43e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1249019940 718 PKLRHLDLSHNSISLIPNEVGL-LQSLQYFDITDNKVEILPKQLFRC-TKLRVLCLGNNGI 776
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKgLSNLKVLDLSNNLLTTLSPGAFSGlPSLRYLDLSGNRL 61
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
690-813 |
6.57e-04 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 43.30 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 690 SISHVKNIEILhlSYNKLETLPAALFYLPKLRHLDLSHNSISL-IPNEV-GLLQSLQYFDITDNKVE-ILPKQLFRCtkL 766
Cdd:PLN00113 67 NSSRVVSIDLS--GKNISGKISSAIFRLPYIQTINLSNNQLSGpIPDDIfTTSSSLRYLNLSNNNFTgSIPRGSIPN--L 142
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1249019940 767 RVLCLGNNGIT-VLPEAVGQLTQLTQLELKGNCL-GHLPFQLSQCQHLK 813
Cdd:PLN00113 143 ETLDLSNNMLSgEIPNDIGSFSSLKVLDLGGNVLvGKIPNSLTNLTSLE 191
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
498-766 |
7.31e-04 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 43.32 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 498 ISQMINLQELHLYHSPAKVEHTAFTFLRDHLKCLHVKFTDVAEIPPWLYLLRSLRELYLVG--GLSS------------- 562
Cdd:PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGcsRLKSfpdistniswldl 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 563 ------EHNKMIGLESLKELRHLKMLYLKSNLNKIPTN--LAELSPHLVKLVVHNDGTKVVVLNSLKKMANLVELELHNC 634
Cdd:PLN03210 733 detaieEFPSNLRLENLDELILCEMKSEKLWERVQPLTplMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1249019940 635 -DLERIPHAIfSLINLQELDLKSNS-IRTIEEIISfqhlkRLTCLKLWHNRIIAIPQSISHVKNIEilHLSYNKLETLPA 712
Cdd:PLN03210 813 iNLETLPTGI-NLESLESLDLSGCSrLRTFPDIST-----NISDLNLSRTGIEEVPWWIEKFSNLS--FLDMNGCNNLQR 884
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1249019940 713 ALFYLPKLRHLD---------LSHNSISLIPNEVGLlqslqyfdITDNKVEILPK----QLFRCTKL 766
Cdd:PLN03210 885 VSLNISKLKHLEtvdfsdcgaLTEASWNGSPSEVAM--------ATDNIHSKLPStvciNFINCFNL 943
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
695-728 |
3.04e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 36.07 E-value: 3.04e-03
10 20 30
....*....|....*....|....*....|....
gi 1249019940 695 KNIEILHLSYNKLETLPAaLFYLPKLRHLDLSHN 728
Cdd:pfam12799 1 PNLEVLDLSNNQITDIPP-LAKLPNLETLDLSGN 33
|
|
| |
