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Conserved domains on  [gi|1265306944|gb|PGS28823|]
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hypothetical protein COC59_03745 [Bacillus cereus]

Protein Classification

YwzB family protein( domain architecture ID 10008869)

YwzB family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YwzB COG4836
Uncharacterized membrane protein YwzB [Function unknown];
5-78 1.62e-27

Uncharacterized membrane protein YwzB [Function unknown];


:

Pssm-ID: 443864  Cd Length: 75  Bit Score: 94.52  E-value: 1.62e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1265306944  5 LGQQALIAIVSHLLFITITWWALQGVHIERLMKPGKVMQTRVLLILITIAIGTSVSNFFLDYLGYSKSLTYLVK 78
Cdd:COG4836    2 IGQQALISIVSHLLFIALAWWALQALRFDKFFKKGRVFQARLLYIFLSIAIGYTVSNFFLDYLGWSQQLPYLFS 75
 
Name Accession Description Interval E-value
YwzB COG4836
Uncharacterized membrane protein YwzB [Function unknown];
5-78 1.62e-27

Uncharacterized membrane protein YwzB [Function unknown];


Pssm-ID: 443864  Cd Length: 75  Bit Score: 94.52  E-value: 1.62e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1265306944  5 LGQQALIAIVSHLLFITITWWALQGVHIERLMKPGKVMQTRVLLILITIAIGTSVSNFFLDYLGYSKSLTYLVK 78
Cdd:COG4836    2 IGQQALISIVSHLLFIALAWWALQALRFDKFFKKGRVFQARLLYIFLSIAIGYTVSNFFLDYLGWSQQLPYLFS 75
int_mem_ywzB TIGR02327
conserved hypothetical integral membrane protein; Members of this protein family are small, ...
 10-77 4.61e-22

conserved hypothetical integral membrane protein; Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; pfam06612 describes the same family as Protein of unknown function DUF1146.


Pssm-ID: 131380  Cd Length: 68  Bit Score: 80.46  E-value: 4.61e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1265306944 10 LIAIVSHLLFITITWWALQGVHIERLMKPGKVMQTRVLLILITIAIGTSVSNFFLDYLGYSKSLTYLV 77
Cdd:TIGR02327  1 IVAIVSHLLFIGISYWALQVIDWEKFIKPQNVGQLRVLVVLIAIALGYTVSHFFLELIQLSQSLFFEF 68
DUF1146 pfam06612
Protein of unknown function (DUF1146); This family consists of several hypothetical bacterial ...
 17-64 4.16e-16

Protein of unknown function (DUF1146); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 429031  Cd Length: 48  Bit Score: 64.77  E-value: 4.16e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1265306944 17 LLFITITWWALQGVHIERLMKPGKVMQTRVLLILITIAIGTSVSNFFL 64
Cdd:pfam06612  1 LVFIALAFWALQAIRFEKFFKKPKVPQARLLLVLLSIALGYLVSSFFL 48
 
Name Accession Description Interval E-value
YwzB COG4836
Uncharacterized membrane protein YwzB [Function unknown];
5-78 1.62e-27

Uncharacterized membrane protein YwzB [Function unknown];


Pssm-ID: 443864  Cd Length: 75  Bit Score: 94.52  E-value: 1.62e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1265306944  5 LGQQALIAIVSHLLFITITWWALQGVHIERLMKPGKVMQTRVLLILITIAIGTSVSNFFLDYLGYSKSLTYLVK 78
Cdd:COG4836    2 IGQQALISIVSHLLFIALAWWALQALRFDKFFKKGRVFQARLLYIFLSIAIGYTVSNFFLDYLGWSQQLPYLFS 75
int_mem_ywzB TIGR02327
conserved hypothetical integral membrane protein; Members of this protein family are small, ...
 10-77 4.61e-22

conserved hypothetical integral membrane protein; Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; pfam06612 describes the same family as Protein of unknown function DUF1146.


Pssm-ID: 131380  Cd Length: 68  Bit Score: 80.46  E-value: 4.61e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1265306944 10 LIAIVSHLLFITITWWALQGVHIERLMKPGKVMQTRVLLILITIAIGTSVSNFFLDYLGYSKSLTYLV 77
Cdd:TIGR02327  1 IVAIVSHLLFIGISYWALQVIDWEKFIKPQNVGQLRVLVVLIAIALGYTVSHFFLELIQLSQSLFFEF 68
DUF1146 pfam06612
Protein of unknown function (DUF1146); This family consists of several hypothetical bacterial ...
 17-64 4.16e-16

Protein of unknown function (DUF1146); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 429031  Cd Length: 48  Bit Score: 64.77  E-value: 4.16e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1265306944 17 LLFITITWWALQGVHIERLMKPGKVMQTRVLLILITIAIGTSVSNFFL 64
Cdd:pfam06612  1 LVFIALAFWALQAIRFEKFFKKPKVPQARLLLVLLSIALGYLVSSFFL 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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