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Conserved domains on  [gi|1268905803|gb|PHL11551|]
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XkdX family protein [Enterococcus faecium]

Protein Classification

XkdX family protein( domain architecture ID 10560534)

XkdX family protein similar to Bacillus subtilis phage-like element PBSX protein XkdX

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_XkdX pfam09693
Phage uncharacterized protein (Phage_XkdX); This entry identifies a family of small (about 50 ...
 4-41 2.76e-08

Phage uncharacterized protein (Phage_XkdX); This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.


:

Pssm-ID: 462850  Cd Length: 40  Bit Score: 43.69  E-value: 2.76e-08
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1268905803  4 FSDVKMMFDWGCFTEEQVREFVPL-CITDEEADKIISKE 41
Cdd:pfam09693  1 FEDVKRYYDWGLWTKEQVRNAVGKgWITAEEYEEITGEE 39
 
Name Accession Description Interval E-value
Phage_XkdX pfam09693
Phage uncharacterized protein (Phage_XkdX); This entry identifies a family of small (about 50 ...
 4-41 2.76e-08

Phage uncharacterized protein (Phage_XkdX); This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.


Pssm-ID: 462850  Cd Length: 40  Bit Score: 43.69  E-value: 2.76e-08
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1268905803  4 FSDVKMMFDWGCFTEEQVREFVPL-CITDEEADKIISKE 41
Cdd:pfam09693  1 FEDVKRYYDWGLWTKEQVRNAVGKgWITAEEYEEITGEE 39
phage_XkdX TIGR01669
phage uncharacterized protein, XkdX family; This model represents a family of small (about 50 ...
 3-42 2.71e-04

phage uncharacterized protein, XkdX family; This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273745  Cd Length: 45  Bit Score: 33.68  E-value: 2.71e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1268905803  3 SFSDVKMMFDWGCFTEEQVREFVPL-CITDEEADKIISKEE 42
Cdd:TIGR01669  5 SFEKVKTYYLWGYYSNEDVNKFVEKkLITREQYKVITGEKY 45
 
Name Accession Description Interval E-value
Phage_XkdX pfam09693
Phage uncharacterized protein (Phage_XkdX); This entry identifies a family of small (about 50 ...
 4-41 2.76e-08

Phage uncharacterized protein (Phage_XkdX); This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.


Pssm-ID: 462850  Cd Length: 40  Bit Score: 43.69  E-value: 2.76e-08
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1268905803  4 FSDVKMMFDWGCFTEEQVREFVPL-CITDEEADKIISKE 41
Cdd:pfam09693  1 FEDVKRYYDWGLWTKEQVRNAVGKgWITAEEYEEITGEE 39
phage_XkdX TIGR01669
phage uncharacterized protein, XkdX family; This model represents a family of small (about 50 ...
 3-42 2.71e-04

phage uncharacterized protein, XkdX family; This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273745  Cd Length: 45  Bit Score: 33.68  E-value: 2.71e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1268905803  3 SFSDVKMMFDWGCFTEEQVREFVPL-CITDEEADKIISKEE 42
Cdd:TIGR01669  5 SFEKVKTYYLWGYYSNEDVNKFVEKkLITREQYKVITGEKY 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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