|
Name |
Accession |
Description |
Interval |
E-value |
| Laminin_G_3 |
pfam13385 |
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
848-992 |
2.80e-21 |
|
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.
:
Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 92.83 E-value: 2.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 848 SGTDRVVIPAFALSGSRLSLEAVFSIKAVTAHTQTVIGNFANGkSYALDLVS-GKPRFRINN-----QSVTAPSAITPGQ 921
Cdd:pfam13385 2 GGSDYVTLPDALLPTSDFTVSAWVKPDSLPGWARAIISSSGGG-GYSLGLDGdGRLRFAVNGgnggwDTVTSGASVPLGQ 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1278106636 922 FVYVAGTYDGSAIKLFVNGTQVAQSAYSLPINQDPVDHILGGAVANSTDFLDGVLDEVRLSGRPLTTPEIQ 992
Cdd:pfam13385 81 WTHVAVTYDGGTLRLYVNGVLVGSSTLTGGPPPGTGGPLYIGRSPGGDDYFNGLIDEVRIYDRALSAAEIA 151
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
2199-2608 |
4.84e-18 |
|
Fibronectin type 3 domain [General function prediction only];
:
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 91.22 E-value: 4.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2199 ANRWTGTFTVQKQMAHGAAAITYSGKDFVGNRSAVATGETSFFIDHQ----SPKTVITLSPSAPFSVKTDLNVGITVRFD 2274
Cdd:COG3401 73 AGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSpavgTATTATAVAGGAATAGTYALGAGLYGVDG 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2275 ETVSGTPLL--DLNTPDGSRNQIALTAQPDGSWTGTQRFTLSMLGGQEIGE-CSFAVSAVDLVGNmdtvIIQGETFFIYN 2351
Cdd:COG3401 153 ANASGTTASsvAGAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTtYYYRVAATDTGGE----SAPSNEVSVTT 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2352 NQPPPLDAPILTAVVETGGRVDLVWTGVPG-AAGGYNLYRRTAAQLPSEAVPVImgwTETELTD-GPLPDDTYYYSVEAV 2429
Cdd:COG3401 229 PTTPPSAPTGLTATADTPGSVTLSWDPVTEsDATGYRVYRSNSGDGPFTKVATV---TTTSYTDtGLTNGTTYYYRVTAV 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2430 DIQGYPGLLSAEVPATTDATPPEPPATLTLK-ELGSGINASWPASAGAAV--YRLYQSATGTilpGISRKVAET-TALSR 2505
Cdd:COG3401 306 DAAGNESAPSNVVSVTTDLTPPAAPSGLTATaVGSSSITLSWTASSDADVtgYNVYRSTSGG---GTYTKIAETvTTTSY 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2506 VDNQPDAGAN-TYGITAVDAAGNESAATTAQIGVALPPVSQLTVTRTSLGKAVLNWTSKPGMSYHvyRNGAKVTATALAG 2584
Cdd:COG3401 383 TDTGLTPGTTyYYKVTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASA--ASNPGVSAAVLAD 460
|
410 420
....*....|....*....|....
gi 1278106636 2585 GPYTDNFYNGGTVVYGVSATDGVH 2608
Cdd:COG3401 461 GGDTGNAVPFTTTSSTVTATTTDT 484
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1338-1923 |
1.24e-16 |
|
Fibronectin type 3 domain [General function prediction only];
:
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 86.98 E-value: 1.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1338 SDTYQGSFTFTTGMTNGTWRLSVSGARDLDQNRMGLVDSYSFELDTAPPDDPTVTV--AVPSMTRVVMLPLSGTKDAYAD 1415
Cdd:COG3401 9 LDAGIAASAAANTAVNALSKAGGSGKTILVYLAVVLSVTTKESPGTLLVAAGLSSGggLGTGGRAGTTSGVAAVAVAAAP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1416 IRINGVQRVAATVNTTWSYDYRLSQGAQSLVITSEDAAGNGSSALTYAVTLDTIPPALTINPVTSPTDLDSQTITGRTEI 1495
Cdd:COG3401 89 PTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1496 GAALTVNGTTHVAVNADGTWSYQTPVMSEGV-----NQFTFRADDTAGNfVQKSVSIDYDVSAPQPIPASLLQVDGNGDG 1570
Cdd:COG3401 169 VVSPDTSATAAVATTSLTVTSTTLVDGGGDIepgttYYYRVAATDTGGE-SAPSNEVSVTTPTTPPSAPTGLTATADTPG 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1571 KtVRLSWAGYAEVDVAYYRIYR---ESGSFSNVTSLNpvqtvnaGTSGTaVSGLTKGQTYYFAVVPVDDLGHFDPNVNAK 1647
Cdd:COG3401 248 S-VTLSWDPVTESDATGYRVYRsnsGDGPFTKVATVT-------TTSYT-DTGLTNGTTYYYRVTAVDAAGNESAPSNVV 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1648 PGTPaDTQAPADVTGLHAVSVTEdvnrvNTIVLGWTRNqSDPDVTGQTLYfNAGTGEDGGTPLGAGVN--SYTKNGLSDE 1725
Cdd:COG3401 319 SVTT-DLTPPAAPSGLTATAVGS-----SSITLSWTAS-SDADVTGYNVY-RSTSGGGTYTKIAETVTttSYTDTGLTPG 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1726 TQYTFRVTVKDTDGNESAGAFIQPVTVLRNPANLSAVPWNGKVTLTWDDLPSNLLGYVAGYNVYYSQNPFSYVTGF-TPA 1804
Cdd:COG3401 391 TTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNaVPF 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1805 VRVSATGMGGQAVITGLTNGVPYYFAVTTVNVSGGERKTVTTVSAAPRSDMEPPVIDSINITEGQVITEPYTINVKVKDA 1884
Cdd:COG3401 471 TTTSSTVTATTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDL 550
|
570 580 590
....*....|....*....|....*....|....*....
gi 1278106636 1885 ESAVASLAVDVDGVNLITGTSSSISAFYNIGLQGAIYQN 1923
Cdd:COG3401 551 VSLTTSASSSVSGAGLGSGNLYLITTLGGSLLTTTSTNT 589
|
|
| Beta_helix |
pfam13229 |
Right handed beta helix region; This region contains a parallel beta helix region that shares ... |
18-183 |
2.54e-12 |
|
Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
:
Pssm-ID: 463811 [Multi-domain] Cd Length: 158 Bit Score: 67.43 E-value: 2.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 18 GSRVSGSTVKNNQGRGISIRSDNSAIqdwaIQSSvEISGNGGDygssgsdqdaGIYVYtyhnGTSNIVdISGNVIHDNQD 97
Cdd:pfam13229 10 NATIKNNTISNNGGYGIYLRGSSNAT----IENN-TITNNGGD----------GIEIS----GSSNNT-ISNNTISNNGG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 98 NGILAYtydGTLTPVISNNEIYSSGR-GVYLYsyyyaNASTVMITDNEIHE-GTLGIEIDRNYRsqtlTVEVSRNKVYGH 175
Cdd:pfam13229 70 GGIALR---GSSNNLIENNTISNNGGaGIYLS-----DSSNNTIENNIIHNnGGSGIVIEDSSN----NVTISNNTVTNN 137
|
....*...
gi 1278106636 176 SGVGVKLH 183
Cdd:pfam13229 138 KGAGILIV 145
|
|
| Laminin_G_3 super family |
cl48183 |
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
638-787 |
1.55e-10 |
|
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.
The actual alignment was detected with superfamily member pfam13385:
Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 62.02 E-value: 1.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 638 DGDHIRVPAAAALDLTETMTVEFLFRNSGGAANGILIGKMDAANtGWAIQLDGSGDLGVNINGS-----VITTGQKYQDG 712
Cdd:pfam13385 1 DGGSDYVTLPDALLPTSDFTVSAWVKPDSLPGWARAIISSSGGG-GYSLGLDGDGRLRFAVNGGnggwdTVTSGASVPLG 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278106636 713 KWHYGAMLRKGTSLTLLIDGQPALNAAIVPGPIS-TSADLYFGARYLAG-NFEGrldqvAVDEVRISDTVRSNEELA 787
Cdd:pfam13385 80 QWTHVAVTYDGGTLRLYVNGVLVGSSTLTGGPPPgTGGPLYIGRSPGGDdYFNG-----LIDEVRIYDRALSAAEIA 151
|
|
| Laminin_G_3 super family |
cl48183 |
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
1138-1263 |
2.24e-08 |
|
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.
The actual alignment was detected with superfamily member pfam13385:
Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 55.85 E-value: 2.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1138 SDRLEYDASVINPESGTVEFhllW-----YGTDGRILTITDGNGAPVILDIQAGTLILDING-----HALLSSTVLVPGV 1207
Cdd:pfam13385 4 SDYVTLPDALLPTSDFTVSA---WvkpdsLPGWARAIISSSGGGGYSLGLDGDGRLRFAVNGgnggwDTVTSGASVPLGQ 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1278106636 1208 WYHVAFTYGAAGFGLYVNGTLEAGSTTPVDLSAATG--LVIG-EFGGHASTDMTVDNMR 1263
Cdd:pfam13385 81 WTHVAVTYDGGTLRLYVNGVLVGSSTLTGGPPPGTGgpLYIGrSPGGDDYFNGLIDEVR 139
|
|
| FN3 super family |
cl27307 |
Fibronectin type 3 domain [General function prediction only]; |
214-572 |
2.73e-08 |
|
Fibronectin type 3 domain [General function prediction only];
The actual alignment was detected with superfamily member COG3401:
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 60.02 E-value: 2.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 214 EAASVAEVHYNNLLRAGSSVYTLSNQSTQNVNAQENWWGKTTTSEIAAAVYDRYDNSAKGIVDYSNWLTEALGDILVDIS 293
Cdd:COG3401 50 ESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTAT 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 294 RMAISPNNDGVADSTTITANFPQLVDWNLVIAGTAVNETRTNSD--------VFSYTWYGTNDGTAGGTVMPEGNYNATV 365
Cdd:COG3401 130 AVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDtsataavaTTSLTVTSTTLVDGGGDIEPGTTYYYRV 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 366 EARSPADGSLVGSSVTKTLTVDLTGPQSVITngpahGSATSQSSVTFVWSGTDNftpSANLEYAVSWDGAPFSAYSSDTT 445
Cdd:COG3401 210 AATDTGGESAPSNEVSVTTPTTPPSAPTGLT-----ATADTPGSVTLSWDPVTE---SDATGYRVYRSNSGDGPFTKVAT 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 446 SNR-----SGLSQGL-HTFTVKTRDNVGNEETTPESRSFTVDLSGPDPVASLSAVVLSEARVRLDWTASPSTDIGSYVIY 519
Cdd:COG3401 282 VTTtsytdTGLTNGTtYYYRVTAVDAAGNESAPSNVVSVTTDLTPPAAPSGLTATAVGSSSITLSWTASSDADVTGYNVY 361
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1278106636 520 WDNGTGNVNygTPLATVGSTTiNWTSITLAEG-SYRFGVRAVDVAGNSSQPVEV 572
Cdd:COG3401 362 RSTSGGGTY--TKIAETVTTT-SYTDTGLTPGtTYYYKVTAVDAAGNESAPSEE 412
|
|
| FN3 super family |
cl27307 |
Fibronectin type 3 domain [General function prediction only]; |
1775-2165 |
5.30e-08 |
|
Fibronectin type 3 domain [General function prediction only];
The actual alignment was detected with superfamily member COG3401:
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 58.86 E-value: 5.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1775 LPSNLLGYVAGYNVYYSQNPFSYVTGFTPAVRVSATGMGGQAVITGLTNGVPYYFAVTTVNVSGGERKTVTTVSAAPRSD 1854
Cdd:COG3401 41 AVVLSVTTKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSP 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1855 MEPPVIDSINITEGQVITEPYTINVKVKDAESAVASLAVDVDGVNLITGTSSSISA------------FYNIGLQGAIYQ 1922
Cdd:COG3401 121 AVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSAtaavattsltvtSTTLVDGGGDIE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1923 NGNHSIRIRTADTLGNQAAYS--FGVMVSGAAPRPPV-LTGTipSGTVSTPTLTSVNGTAEEAQTITLLVNGVQWSQTAV 1999
Cdd:COG3401 201 PGTTYYYRVAATDTGGESAPSneVSVTTPTTPPSAPTgLTAT--ADTPGSVTLSWDPVTESDATGYRVYRSNSGDGPFTK 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2000 VNGAGQFTFAAAAISEGGN-ELKAIASDRRG-SSAPSNSLYVTLDTGAPGGPHSLKAEARAGGVVHFAWSPAAGEIPDRY 2077
Cdd:COG3401 279 VATVTTTSYTDTGLTNGTTyYYRVTAVDAAGnESAPSNVVSVTTDLTPPAAPSGLTATAVGSSSITLSWTASSDADVTGY 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2078 HLYQSVSAFSSATAPGVravdnpgspiTVAETTYLpDNDL----VYYYAVTALDESGNESPISNVVSVAGDRVSPDAVLA 2153
Cdd:COG3401 359 NVYRSTSGGGTYTKIAE----------TVTTTSYT-DTGLtpgtTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLT 427
|
410
....*....|..
gi 1278106636 2154 VDPDRLIEGSVI 2165
Cdd:COG3401 428 ASVDAVPLTDVA 439
|
|
| CarboxypepD_reg |
pfam13620 |
Carboxypeptidase regulatory-like domain; |
3185-3260 |
7.19e-07 |
|
Carboxypeptidase regulatory-like domain;
:
Pssm-ID: 433354 [Multi-domain] Cd Length: 81 Bit Score: 49.59 E-value: 7.19e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278106636 3185 VTDSLYENVEAADVSIQHAQvLSIRQDAKTDANGSATFTDLPTGSYNYTVSAPGHKSWMGT-FQVQPGYTTPVEVVL 3260
Cdd:pfam13620 6 VTDPSGAPVPGATVTVTNTD-TGTVRTTTTDADGRYRFPGLPPGTYTVTVSAPGFKTATRTgVTVTAGQTTTLDVTL 81
|
|
| MJ0795 super family |
cl27848 |
S-layer protein MJ0795, predicted component of type IV pili-like system [General function ... |
2978-3259 |
2.99e-03 |
|
S-layer protein MJ0795, predicted component of type IV pili-like system [General function prediction only];
The actual alignment was detected with superfamily member COG1361:
Pssm-ID: 440972 [Multi-domain] Cd Length: 409 Bit Score: 43.15 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2978 VSKNDSIVVPIKLTNPGETKLTNLTYSVAGSN-AEI-TGAVNGAGDLQAGETRTVNVTISVGNPAvNTGLATVTAR---- 3051
Cdd:COG1361 36 VAPGEEVTLTVTITNDGTLTARNVTVELEGDYpFEVkSGEQSVGGSLPPGQSVTVTFTVTVPEDA-EPGTYPIPVTvsys 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 3052 ---TAEGAQASMKIELILYEaQPYLSASPSFVEGFVHPGEQAIRGVTFTNEGFKDLINARISGPSTSWIGLD-------- 3120
Cdd:COG1361 115 ygyTDRTETETYTVTVKVEG-EPRFEVVSVTSPDSLTPGDTGTLTLTIKNTGTGTAKNVTVTLTSPSGDLTDlepgprpa 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 3121 ----------------RSRAVGTVPAGAGFTLGVVMTPPAGTQDGIYTDSFTVEADNH------PPYIYYVQVH------ 3172
Cdd:COG1361 194 tnvvvvlsspvspvgsNSVALGTLEPGESATFTFKVDVSEDAEPGPYPLPLTVTYRDEdgdtysDTVTIGVYVApkadfe 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 3173 -------VTSANTGNVTFSVTDSLYENVEAADVSIQHAQVLSIRQDAKT----DANGSATFT-------DLPTGSYNYTV 3234
Cdd:COG1361 274 venvestITAGETVTITITVTNTGNETAKNVVARLSADDPLSSLDDEAFigdlAPGESATVTftvsassDATPGTYPITV 353
|
330 340
....*....|....*....|....*
gi 1278106636 3235 SAPGHKSWMGTFQVQPgYTTPVEVV 3259
Cdd:COG1361 354 TIRYDDDDGNTQLSDT-ITVPVEVT 377
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Laminin_G_3 |
pfam13385 |
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
848-992 |
2.80e-21 |
|
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.
Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 92.83 E-value: 2.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 848 SGTDRVVIPAFALSGSRLSLEAVFSIKAVTAHTQTVIGNFANGkSYALDLVS-GKPRFRINN-----QSVTAPSAITPGQ 921
Cdd:pfam13385 2 GGSDYVTLPDALLPTSDFTVSAWVKPDSLPGWARAIISSSGGG-GYSLGLDGdGRLRFAVNGgnggwDTVTSGASVPLGQ 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1278106636 922 FVYVAGTYDGSAIKLFVNGTQVAQSAYSLPINQDPVDHILGGAVANSTDFLDGVLDEVRLSGRPLTTPEIQ 992
Cdd:pfam13385 81 WTHVAVTYDGGTLRLYVNGVLVGSSTLTGGPPPGTGGPLYIGRSPGGDDYFNGLIDEVRIYDRALSAAEIA 151
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
2199-2608 |
4.84e-18 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 91.22 E-value: 4.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2199 ANRWTGTFTVQKQMAHGAAAITYSGKDFVGNRSAVATGETSFFIDHQ----SPKTVITLSPSAPFSVKTDLNVGITVRFD 2274
Cdd:COG3401 73 AGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSpavgTATTATAVAGGAATAGTYALGAGLYGVDG 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2275 ETVSGTPLL--DLNTPDGSRNQIALTAQPDGSWTGTQRFTLSMLGGQEIGE-CSFAVSAVDLVGNmdtvIIQGETFFIYN 2351
Cdd:COG3401 153 ANASGTTASsvAGAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTtYYYRVAATDTGGE----SAPSNEVSVTT 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2352 NQPPPLDAPILTAVVETGGRVDLVWTGVPG-AAGGYNLYRRTAAQLPSEAVPVImgwTETELTD-GPLPDDTYYYSVEAV 2429
Cdd:COG3401 229 PTTPPSAPTGLTATADTPGSVTLSWDPVTEsDATGYRVYRSNSGDGPFTKVATV---TTTSYTDtGLTNGTTYYYRVTAV 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2430 DIQGYPGLLSAEVPATTDATPPEPPATLTLK-ELGSGINASWPASAGAAV--YRLYQSATGTilpGISRKVAET-TALSR 2505
Cdd:COG3401 306 DAAGNESAPSNVVSVTTDLTPPAAPSGLTATaVGSSSITLSWTASSDADVtgYNVYRSTSGG---GTYTKIAETvTTTSY 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2506 VDNQPDAGAN-TYGITAVDAAGNESAATTAQIGVALPPVSQLTVTRTSLGKAVLNWTSKPGMSYHvyRNGAKVTATALAG 2584
Cdd:COG3401 383 TDTGLTPGTTyYYKVTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASA--ASNPGVSAAVLAD 460
|
410 420
....*....|....*....|....
gi 1278106636 2585 GPYTDNFYNGGTVVYGVSATDGVH 2608
Cdd:COG3401 461 GGDTGNAVPFTTTSSTVTATTTDT 484
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1338-1923 |
1.24e-16 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 86.98 E-value: 1.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1338 SDTYQGSFTFTTGMTNGTWRLSVSGARDLDQNRMGLVDSYSFELDTAPPDDPTVTV--AVPSMTRVVMLPLSGTKDAYAD 1415
Cdd:COG3401 9 LDAGIAASAAANTAVNALSKAGGSGKTILVYLAVVLSVTTKESPGTLLVAAGLSSGggLGTGGRAGTTSGVAAVAVAAAP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1416 IRINGVQRVAATVNTTWSYDYRLSQGAQSLVITSEDAAGNGSSALTYAVTLDTIPPALTINPVTSPTDLDSQTITGRTEI 1495
Cdd:COG3401 89 PTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1496 GAALTVNGTTHVAVNADGTWSYQTPVMSEGV-----NQFTFRADDTAGNfVQKSVSIDYDVSAPQPIPASLLQVDGNGDG 1570
Cdd:COG3401 169 VVSPDTSATAAVATTSLTVTSTTLVDGGGDIepgttYYYRVAATDTGGE-SAPSNEVSVTTPTTPPSAPTGLTATADTPG 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1571 KtVRLSWAGYAEVDVAYYRIYR---ESGSFSNVTSLNpvqtvnaGTSGTaVSGLTKGQTYYFAVVPVDDLGHFDPNVNAK 1647
Cdd:COG3401 248 S-VTLSWDPVTESDATGYRVYRsnsGDGPFTKVATVT-------TTSYT-DTGLTNGTTYYYRVTAVDAAGNESAPSNVV 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1648 PGTPaDTQAPADVTGLHAVSVTEdvnrvNTIVLGWTRNqSDPDVTGQTLYfNAGTGEDGGTPLGAGVN--SYTKNGLSDE 1725
Cdd:COG3401 319 SVTT-DLTPPAAPSGLTATAVGS-----SSITLSWTAS-SDADVTGYNVY-RSTSGGGTYTKIAETVTttSYTDTGLTPG 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1726 TQYTFRVTVKDTDGNESAGAFIQPVTVLRNPANLSAVPWNGKVTLTWDDLPSNLLGYVAGYNVYYSQNPFSYVTGF-TPA 1804
Cdd:COG3401 391 TTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNaVPF 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1805 VRVSATGMGGQAVITGLTNGVPYYFAVTTVNVSGGERKTVTTVSAAPRSDMEPPVIDSINITEGQVITEPYTINVKVKDA 1884
Cdd:COG3401 471 TTTSSTVTATTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDL 550
|
570 580 590
....*....|....*....|....*....|....*....
gi 1278106636 1885 ESAVASLAVDVDGVNLITGTSSSISAFYNIGLQGAIYQN 1923
Cdd:COG3401 551 VSLTTSASSSVSGAGLGSGNLYLITTLGGSLLTTTSTNT 589
|
|
| Beta_helix |
pfam13229 |
Right handed beta helix region; This region contains a parallel beta helix region that shares ... |
18-183 |
2.54e-12 |
|
Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Pssm-ID: 463811 [Multi-domain] Cd Length: 158 Bit Score: 67.43 E-value: 2.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 18 GSRVSGSTVKNNQGRGISIRSDNSAIqdwaIQSSvEISGNGGDygssgsdqdaGIYVYtyhnGTSNIVdISGNVIHDNQD 97
Cdd:pfam13229 10 NATIKNNTISNNGGYGIYLRGSSNAT----IENN-TITNNGGD----------GIEIS----GSSNNT-ISNNTISNNGG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 98 NGILAYtydGTLTPVISNNEIYSSGR-GVYLYsyyyaNASTVMITDNEIHE-GTLGIEIDRNYRsqtlTVEVSRNKVYGH 175
Cdd:pfam13229 70 GGIALR---GSSNNLIENNTISNNGGaGIYLS-----DSSNNTIENNIIHNnGGSGIVIEDSSN----NVTISNNTVTNN 137
|
....*...
gi 1278106636 176 SGVGVKLH 183
Cdd:pfam13229 138 KGAGILIV 145
|
|
| NosD |
COG3420 |
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ... |
28-244 |
8.83e-11 |
|
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];
Pssm-ID: 442646 [Multi-domain] Cd Length: 343 Bit Score: 66.48 E-value: 8.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 28 NNQGRGISIRSDNSAIQDwaiqssVEISGNGGDYgssgSDQDAGIYVYTYHN------------------GTSNIVdISG 89
Cdd:COG3420 67 GGKGTVITITADNVTVRG------LTITGSGDSL----TDDDAGIYVRGADNaviennriennlfgiyleGSDNNV-IRN 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 90 NVIHDNQD------NGILAYTYDGTltpVISNNEIYSSGRGVYLYsyyyaNASTVMITDNEIHEGTLGI--------EID 155
Cdd:COG3420 136 NTISGNRDlradrgNGIHLWNSPGN---VIEGNTISGGRDGIYLE-----FSDNNVIRNNTIRNLRYGIhymysndnLVE 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 156 RNYRSQTLT---------VEVSRNKVYGHSGVGVKLhrDETTDSYgglaatVQYNsIFHNNGNALELEAASVAEVHYNNL 226
Cdd:COG3420 208 GNTFRDNGAgialmyskgNTVRGNTILGNSGYGILL--KESSDSV------IEGN-TISGNGKGIFIYNSNRNTIRGNLF 278
|
250
....*....|....*...
gi 1278106636 227 LRAGSSVYTLSNqSTQNV 244
Cdd:COG3420 279 AGNGIGIHLTAG-SEGNR 295
|
|
| Laminin_G_3 |
pfam13385 |
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
638-787 |
1.55e-10 |
|
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.
Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 62.02 E-value: 1.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 638 DGDHIRVPAAAALDLTETMTVEFLFRNSGGAANGILIGKMDAANtGWAIQLDGSGDLGVNINGS-----VITTGQKYQDG 712
Cdd:pfam13385 1 DGGSDYVTLPDALLPTSDFTVSAWVKPDSLPGWARAIISSSGGG-GYSLGLDGDGRLRFAVNGGnggwdTVTSGASVPLG 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278106636 713 KWHYGAMLRKGTSLTLLIDGQPALNAAIVPGPIS-TSADLYFGARYLAG-NFEGrldqvAVDEVRISDTVRSNEELA 787
Cdd:pfam13385 80 QWTHVAVTYDGGTLRLYVNGVLVGSSTLTGGPPPgTGGPLYIGRSPGGDdYFNG-----LIDEVRIYDRALSAAEIA 151
|
|
| Laminin_G_3 |
pfam13385 |
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
1138-1263 |
2.24e-08 |
|
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.
Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 55.85 E-value: 2.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1138 SDRLEYDASVINPESGTVEFhllW-----YGTDGRILTITDGNGAPVILDIQAGTLILDING-----HALLSSTVLVPGV 1207
Cdd:pfam13385 4 SDYVTLPDALLPTSDFTVSA---WvkpdsLPGWARAIISSSGGGGYSLGLDGDGRLRFAVNGgnggwDTVTSGASVPLGQ 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1278106636 1208 WYHVAFTYGAAGFGLYVNGTLEAGSTTPVDLSAATG--LVIG-EFGGHASTDMTVDNMR 1263
Cdd:pfam13385 81 WTHVAVTYDGGTLRLYVNGVLVGSSTLTGGPPPGTGgpLYIGrSPGGDDYFNGLIDEVR 139
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
214-572 |
2.73e-08 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 60.02 E-value: 2.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 214 EAASVAEVHYNNLLRAGSSVYTLSNQSTQNVNAQENWWGKTTTSEIAAAVYDRYDNSAKGIVDYSNWLTEALGDILVDIS 293
Cdd:COG3401 50 ESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTAT 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 294 RMAISPNNDGVADSTTITANFPQLVDWNLVIAGTAVNETRTNSD--------VFSYTWYGTNDGTAGGTVMPEGNYNATV 365
Cdd:COG3401 130 AVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDtsataavaTTSLTVTSTTLVDGGGDIEPGTTYYYRV 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 366 EARSPADGSLVGSSVTKTLTVDLTGPQSVITngpahGSATSQSSVTFVWSGTDNftpSANLEYAVSWDGAPFSAYSSDTT 445
Cdd:COG3401 210 AATDTGGESAPSNEVSVTTPTTPPSAPTGLT-----ATADTPGSVTLSWDPVTE---SDATGYRVYRSNSGDGPFTKVAT 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 446 SNR-----SGLSQGL-HTFTVKTRDNVGNEETTPESRSFTVDLSGPDPVASLSAVVLSEARVRLDWTASPSTDIGSYVIY 519
Cdd:COG3401 282 VTTtsytdTGLTNGTtYYYRVTAVDAAGNESAPSNVVSVTTDLTPPAAPSGLTATAVGSSSITLSWTASSDADVTGYNVY 361
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1278106636 520 WDNGTGNVNygTPLATVGSTTiNWTSITLAEG-SYRFGVRAVDVAGNSSQPVEV 572
Cdd:COG3401 362 RSTSGGGTY--TKIAETVTTT-SYTDTGLTPGtTYYYKVTAVDAAGNESAPSEE 412
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1775-2165 |
5.30e-08 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 58.86 E-value: 5.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1775 LPSNLLGYVAGYNVYYSQNPFSYVTGFTPAVRVSATGMGGQAVITGLTNGVPYYFAVTTVNVSGGERKTVTTVSAAPRSD 1854
Cdd:COG3401 41 AVVLSVTTKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSP 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1855 MEPPVIDSINITEGQVITEPYTINVKVKDAESAVASLAVDVDGVNLITGTSSSISA------------FYNIGLQGAIYQ 1922
Cdd:COG3401 121 AVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSAtaavattsltvtSTTLVDGGGDIE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1923 NGNHSIRIRTADTLGNQAAYS--FGVMVSGAAPRPPV-LTGTipSGTVSTPTLTSVNGTAEEAQTITLLVNGVQWSQTAV 1999
Cdd:COG3401 201 PGTTYYYRVAATDTGGESAPSneVSVTTPTTPPSAPTgLTAT--ADTPGSVTLSWDPVTESDATGYRVYRSNSGDGPFTK 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2000 VNGAGQFTFAAAAISEGGN-ELKAIASDRRG-SSAPSNSLYVTLDTGAPGGPHSLKAEARAGGVVHFAWSPAAGEIPDRY 2077
Cdd:COG3401 279 VATVTTTSYTDTGLTNGTTyYYRVTAVDAAGnESAPSNVVSVTTDLTPPAAPSGLTATAVGSSSITLSWTASSDADVTGY 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2078 HLYQSVSAFSSATAPGVravdnpgspiTVAETTYLpDNDL----VYYYAVTALDESGNESPISNVVSVAGDRVSPDAVLA 2153
Cdd:COG3401 359 NVYRSTSGGGTYTKIAE----------TVTTTSYT-DTGLtpgtTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLT 427
|
410
....*....|..
gi 1278106636 2154 VDPDRLIEGSVI 2165
Cdd:COG3401 428 ASVDAVPLTDVA 439
|
|
| CarboxypepD_reg |
pfam13620 |
Carboxypeptidase regulatory-like domain; |
3185-3260 |
7.19e-07 |
|
Carboxypeptidase regulatory-like domain;
Pssm-ID: 433354 [Multi-domain] Cd Length: 81 Bit Score: 49.59 E-value: 7.19e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278106636 3185 VTDSLYENVEAADVSIQHAQvLSIRQDAKTDANGSATFTDLPTGSYNYTVSAPGHKSWMGT-FQVQPGYTTPVEVVL 3260
Cdd:pfam13620 6 VTDPSGAPVPGATVTVTNTD-TGTVRTTTTDADGRYRFPGLPPGTYTVTVSAPGFKTATRTgVTVTAGQTTTLDVTL 81
|
|
| Ca_tandemer |
NF033510 |
Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the ... |
1461-1539 |
8.68e-06 |
|
Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the biofilm-associated protein Bap of Acinetobacter baumannii (which can exceed 8000 amino acids in length), the calcium-stabilized ice-binding adhesin of the Antarctic bacterium Marinomonas primoryensis, and the giant calcium-binding adhesin SiiE of Salmonella enterica.
Pssm-ID: 411149 [Multi-domain] Cd Length: 97 Bit Score: 46.90 E-value: 8.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1461 TYAVTLDTIPPALTINPVTSPTDLDS------QTITGRT--EIGAALTV--NGTTHVA-VNADGTWSYQTPV-----MSE 1524
Cdd:NF033510 1 THPVTVDTTAPALTINPVAGDDVLNAaeqgqgLTLSGTTtaEAGQTVTVtlNGKTYTAtVDADGSWSVTVPAadlaaLAD 80
|
90
....*....|....*
gi 1278106636 1525 GVNQFTFRADDTAGN 1539
Cdd:NF033510 81 GTYTVTVTVTDAAGN 95
|
|
| Ig_like_BLP2 |
NF040520 |
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ... |
1451-1689 |
2.62e-05 |
|
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.
Pssm-ID: 468522 [Multi-domain] Cd Length: 729 Bit Score: 50.42 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1451 DAAGNGSSALTYAVTLDTIPPAL-TINPVT-------------SPTDLDSQTITGRTEIGAALTV--NGTT--HVAVNAD 1512
Cdd:NF040520 489 DAAGNRSDATDVTGTKDTIAPNKpVLQKVTddvgavkgaiaagGETDDAKPKLSGSGEAKATLTIydNGQAigTVTVGDN 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1513 GTWSYQ-TPVMSEGVNQFTFRADDTAGNFVQKSVSIDYDVSAPQPIPASLlqvdgngdgktvrlswagYAEVDVayyrIY 1591
Cdd:NF040520 569 GKWSFTlDKDLALGKHKITLTQTDAAGNTSEVSDPFTFTVVAPKTASASE------------------QSEVDT----SN 626
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1592 RESGSFSNVTSLNPVQTVNAGTSGTAVSGLTKgqtyyfavVPVDDLghfdpnvnAKPGTPADTQAPADV----TGLHAVS 1667
Cdd:NF040520 627 TETASLADSVGLNTLKLAQETTNETNSQQQES--------VSLDDL--------LKSSSSSESNQIDDVlssqLKPTQTN 690
|
250 260
....*....|....*....|..
gi 1278106636 1668 VTEDVNRVNTIVlgwTRNQSDP 1689
Cdd:NF040520 691 EQSDVNNSSSDV---TTNLEDL 709
|
|
| Glucodextran_B |
pfam09136 |
Glucodextranase, domain B; Members of this family adopt a structure consisting of seven ... |
1471-1550 |
4.67e-05 |
|
Glucodextranase, domain B; Members of this family adopt a structure consisting of seven/eight-strand antiparallel beta-sheets, in a Greek-key topology, similar to the immunoglobulin beta-sandwich fold. They act as cell wall anchors, where they interact with the S-layer present in the cell wall of Gram-positive bacteria by hydrophobic interactions. In glucodextranase, Domain B is buried in the S-layer, and a flexible linker located between domain B and the catalytic unit confers motion to the catalytic unit, which is capable of efficient hydrolysis of the substrates located close to the cell surface.
Pssm-ID: 430428 [Multi-domain] Cd Length: 83 Bit Score: 44.40 E-value: 4.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1471 PALTInpvTSPTDLDSQ-----TITGRT--EIGAALTVNGTThVAVNADGTWSYQTPvMSEGVNQFTFRADDTAGNFVQK 1543
Cdd:pfam09136 1 PELTI---TSPADGLTTnretvTVTGTVadANLDSVTVNGIA-ATVYKDGTFSKRIL-LVEGENVITVIAVDSAGNTVTK 75
|
....*..
gi 1278106636 1544 SVSIDYD 1550
Cdd:pfam09136 76 TITVFAD 82
|
|
| DUF4998 |
pfam16389 |
Domain of unknown function; This family around 200 residues locates in the N-terminal of some ... |
500-577 |
4.72e-05 |
|
Domain of unknown function; This family around 200 residues locates in the N-terminal of some uncharacterized proteins in various Bacteroides and Parabacteroides species. The function of this family remains unknown.
Pssm-ID: 435316 [Multi-domain] Cd Length: 199 Bit Score: 47.31 E-value: 4.72e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1278106636 500 RVRLDWTASPSTDIGSYVIYWDNGTGNVNYgtPLATVGST-TINWTSITLAEGSYRFGVRAVDVAGNSSQPVEVGVTVY 577
Cdd:pfam16389 34 RAKLTWLLVSDPKIVKAKIFWNNGLDSLEV--PITRTAGVdTISVIIDNLPEGSYTFSIRTYDKKGNSSVPSEVTGTVY 110
|
|
| LamGL |
smart00560 |
LamG-like jellyroll fold domain; |
912-987 |
6.62e-05 |
|
LamG-like jellyroll fold domain;
Pssm-ID: 214722 [Multi-domain] Cd Length: 133 Bit Score: 45.49 E-value: 6.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 912 TAPSAITPGQFVYVAGTYDGSA--IKLFVNGTQVAQSAY--SLPINQDPVDHILGGAvANSTDFLDGVLDEVRLSGRPLT 987
Cdd:smart00560 53 TGATADWIGVWVHLAGVYDGGAgkLSLYVNGVEVATSETqpSPSSGNLPQGGRILLG-GAGGENFSGRLDEVRVYNRALT 131
|
|
| COG4733 |
COG4733 |
Phage-related protein, tail protein J [Mobilome: prophages, transposons]; |
385-823 |
9.69e-05 |
|
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
Pssm-ID: 443767 [Multi-domain] Cd Length: 978 Bit Score: 48.40 E-value: 9.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 385 TVDLTGPQSVITNGPAHGSA------TSQSSVTFVWSgtdnfTPSANLEYAVSW---DGAPFSAYSSDTTSNR-SGLSQG 454
Cdd:COG4733 523 AFDDVPPQWPPVNVTTSESLsvvaqgTAVTTLTVSWD-----APAGAVAYEVEWrrdDGNWVSVPRTSGTSFEvPGIYAG 597
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 455 LHTFTVKTRDNVGNEETTPESRSFTV--DLSGPDPVASLSAVVLSEArVRLDWTASPSTDIGSYVIYWDNGTGNVNYGTP 532
Cdd:COG4733 598 DYEVRVRAINALGVSSAWAASSETTVtgKTAPPPAPTGLTATGGLGG-ITLSWSFPVDADTLRTEIRYSTTGDWASATVA 676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 533 LATVGSTTINWTSITlAEGSYRFGVRAVDVAGNSSQPVEVGVTVylKGLVDPISFLFADSHTVALWKmnEPNPTDTVLDV 612
Cdd:COG4733 677 QALYPGNTYTLAGLK-AGQTYYYRARAVDRSGNVSAWWVSGQAS--ADAAGILDAITGQILETELGQ--ELDAIIQNATV 751
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 613 MGLHHGIPTGTRVIQSQNGNARLFIDGDHIRVPAAAALDLTETMTVEFLFRNSGGAANGILIGKMDAANTGWAIQLDGS- 691
Cdd:COG4733 752 AEVVAATVTDVTAQIDTAVLFAGVATAAAIGAEARVAATVAESATAAAATGTAADAAGDASGGVTAGTSGTTGAGDTAAs 831
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 692 ----GDLGVNINGSVITTGQKYQDGKWHY-----------GAMLRKGTSLTLLIDGQPALNAAIVPGPISTSADLYFGAR 756
Cdd:COG4733 832 ttrvAAAVVLAGVVVYGDAIIESGNTGDIvatgdiasaaaGAVATTVSGTTAADVSAVADSTAASLTAIVIAATTIIDAI 911
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278106636 757 YLAGNFEGRLDQVAVDEVRISDTVRSNEELASSAARLNNEGLFVMDDDTLALWLLNETQGTVAVDQT 823
Cdd:COG4733 912 GDGTTREPAGDIGASGGAQGFAVTIVGSFDGAGAVATVDAGQSVVDGVGTAVEAANGTETAAGGGSQ 978
|
|
| Ig_like_BLP2 |
NF040520 |
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ... |
1375-1539 |
9.83e-05 |
|
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.
Pssm-ID: 468522 [Multi-domain] Cd Length: 729 Bit Score: 48.50 E-value: 9.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1375 DSYSFELDTAPPDDPTVTVAVPSMTrvvmlpLSGTKDAYADIRI-NGVQRVAATV------NTTWSYDYRLSQGAqSLVI 1447
Cdd:NF040520 158 DDSNGPVDITPPATPTATLADDTQT------ITGKAEANAKIYIkDATGKVIATGqadasgNYTIKLDQPLVNGN-KVNV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1448 TSEDAAGNGSSALTYAVTLDTIPPaltiNPVTSPTDLDSQTITGRTEIGAALTVN-------GTthVAVNADGTWSYQ-- 1518
Cdd:NF040520 231 TAIDAAGNASKATVVTGTKDTIAP----DAPQAQLNADGTIVTGKTEANAKVSVYdadgkllGT--VTANKEGLYSIKvs 304
|
170 180
....*....|....*....|.
gi 1278106636 1519 TPVMSEGVNqfTFRADDTAGN 1539
Cdd:NF040520 305 PPLTSDKGG--TVIAEDAAGN 323
|
|
| LamG |
cd00110 |
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ... |
636-754 |
1.21e-04 |
|
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Pssm-ID: 238058 [Multi-domain] Cd Length: 151 Bit Score: 45.10 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 636 FIDGDHIRVPAAAALdlTETMTVEFLFRNSggAANGILIGKMDAANTGW-AIQLDGsGDLGVNINGS----VITTGQKYQ 710
Cdd:cd00110 4 FSGSSYVRLPTLPAP--RTRLSISFSFRTT--SPNGLLLYAGSQNGGDFlALELED-GRLVLRYDLGsgslVLSSKTPLN 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1278106636 711 DGKWHYGAMLRKGTSLTLLIDGQPALNAAIVPGP--ISTSADLYFG 754
Cdd:cd00110 79 DGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSalLNLDGPLYLG 124
|
|
| Big_13 |
pfam19077 |
Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in ... |
1967-2043 |
3.89e-04 |
|
Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in bacterial cell surface proteins.
Pssm-ID: 465968 [Multi-domain] Cd Length: 102 Bit Score: 42.25 E-value: 3.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1967 VSTPTLTsvnGTAEEAQTITLLV--NGVQWSQTAVVNGAGQFTF-AAAAISEGGNELKAIASDRRGSSAPSNSLYVTLDT 2043
Cdd:pfam19077 26 DTTPTFT---GTNEDGDVVTVTVsiDGNGVTGTATAGADGNWSFtPPAALADGTYTLTVTVTDIAGNTATSSPLSFTIDT 102
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1755-1838 |
1.71e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 39.91 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1755 NPANLSAVPWNG-KVTLTWDDLPS-NLLGYVAGYNVYYSQNPFSYVtgftpavRVSATGMGGQAVITGLTNGVPYYFAVT 1832
Cdd:smart00060 3 PPSNLRVTDVTStSVTLSWEPPPDdGITGYIVGYRVEYREEGSEWK-------EVNVTPSSTSYTLTGLKPGTEYEFRVR 75
|
....*.
gi 1278106636 1833 TVNVSG 1838
Cdd:smart00060 76 AVNGAG 81
|
|
| LamG |
smart00282 |
Laminin G domain; |
657-756 |
1.87e-03 |
|
Laminin G domain;
Pssm-ID: 214598 [Multi-domain] Cd Length: 132 Bit Score: 41.17 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 657 TVEFLFRNSggAANGILIGKMDAANTGW-AIQLDGsGDLGVNIN-----GSVITTGQKYQDGKWHYGAMLRKGTSLTLLI 730
Cdd:smart00282 1 SISFSFRTT--SPNGLLLYAGSKGGGDYlALELRD-GRLVLRYDlgsgpARLTSDPTPLNDGQWHRVAVERNGRSVTLSV 77
|
90 100
....*....|....*....|....*...
gi 1278106636 731 DGQPALNAAIVPGP--ISTSADLYFGAR 756
Cdd:smart00282 78 DGGNRVSGESPGGLtiLNLDGPLYLGGL 105
|
|
| MJ0795 |
COG1361 |
S-layer protein MJ0795, predicted component of type IV pili-like system [General function ... |
2978-3259 |
2.99e-03 |
|
S-layer protein MJ0795, predicted component of type IV pili-like system [General function prediction only];
Pssm-ID: 440972 [Multi-domain] Cd Length: 409 Bit Score: 43.15 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2978 VSKNDSIVVPIKLTNPGETKLTNLTYSVAGSN-AEI-TGAVNGAGDLQAGETRTVNVTISVGNPAvNTGLATVTAR---- 3051
Cdd:COG1361 36 VAPGEEVTLTVTITNDGTLTARNVTVELEGDYpFEVkSGEQSVGGSLPPGQSVTVTFTVTVPEDA-EPGTYPIPVTvsys 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 3052 ---TAEGAQASMKIELILYEaQPYLSASPSFVEGFVHPGEQAIRGVTFTNEGFKDLINARISGPSTSWIGLD-------- 3120
Cdd:COG1361 115 ygyTDRTETETYTVTVKVEG-EPRFEVVSVTSPDSLTPGDTGTLTLTIKNTGTGTAKNVTVTLTSPSGDLTDlepgprpa 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 3121 ----------------RSRAVGTVPAGAGFTLGVVMTPPAGTQDGIYTDSFTVEADNH------PPYIYYVQVH------ 3172
Cdd:COG1361 194 tnvvvvlsspvspvgsNSVALGTLEPGESATFTFKVDVSEDAEPGPYPLPLTVTYRDEdgdtysDTVTIGVYVApkadfe 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 3173 -------VTSANTGNVTFSVTDSLYENVEAADVSIQHAQVLSIRQDAKT----DANGSATFT-------DLPTGSYNYTV 3234
Cdd:COG1361 274 venvestITAGETVTITITVTNTGNETAKNVVARLSADDPLSSLDDEAFigdlAPGESATVTftvsassDATPGTYPITV 353
|
330 340
....*....|....*....|....*
gi 1278106636 3235 SAPGHKSWMGTFQVQPgYTTPVEVV 3259
Cdd:COG1361 354 TIRYDDDDGNTQLSDT-ITVPVEVT 377
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1755-1846 |
7.52e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 38.25 E-value: 7.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1755 NPANLSAVPWN-GKVTLTWDDlPSNLLGYVAGYNVYYSQNPFSYVTGFTPaVRVSATgmggQAVITGLTNGVPYYFAVTT 1833
Cdd:cd00063 3 PPTNLRVTDVTsTSVTLSWTP-PEDDGGPITGYVVEYREKGSGDWKEVEV-TPGSET----SYTLTGLKPGTEYEFRVRA 76
|
90
....*....|....*..
gi 1278106636 1834 VNVSG----GERKTVTT 1846
Cdd:cd00063 77 VNGGGesppSESVTVTT 93
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
485-566 |
7.91e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 37.98 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 485 PDPVASLSAVVLSEARVRLDWTASPSTDIGSYVIYWDNGTGNVNYGTPLATVGSTTINWTSITLAEGS-YRFGVRAVDVA 563
Cdd:smart00060 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTeYEFRVRAVNGA 80
|
...
gi 1278106636 564 GNS 566
Cdd:smart00060 81 GEG 83
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Laminin_G_3 |
pfam13385 |
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
848-992 |
2.80e-21 |
|
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.
Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 92.83 E-value: 2.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 848 SGTDRVVIPAFALSGSRLSLEAVFSIKAVTAHTQTVIGNFANGkSYALDLVS-GKPRFRINN-----QSVTAPSAITPGQ 921
Cdd:pfam13385 2 GGSDYVTLPDALLPTSDFTVSAWVKPDSLPGWARAIISSSGGG-GYSLGLDGdGRLRFAVNGgnggwDTVTSGASVPLGQ 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1278106636 922 FVYVAGTYDGSAIKLFVNGTQVAQSAYSLPINQDPVDHILGGAVANSTDFLDGVLDEVRLSGRPLTTPEIQ 992
Cdd:pfam13385 81 WTHVAVTYDGGTLRLYVNGVLVGSSTLTGGPPPGTGGPLYIGRSPGGDDYFNGLIDEVRIYDRALSAAEIA 151
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
2199-2608 |
4.84e-18 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 91.22 E-value: 4.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2199 ANRWTGTFTVQKQMAHGAAAITYSGKDFVGNRSAVATGETSFFIDHQ----SPKTVITLSPSAPFSVKTDLNVGITVRFD 2274
Cdd:COG3401 73 AGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSpavgTATTATAVAGGAATAGTYALGAGLYGVDG 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2275 ETVSGTPLL--DLNTPDGSRNQIALTAQPDGSWTGTQRFTLSMLGGQEIGE-CSFAVSAVDLVGNmdtvIIQGETFFIYN 2351
Cdd:COG3401 153 ANASGTTASsvAGAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTtYYYRVAATDTGGE----SAPSNEVSVTT 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2352 NQPPPLDAPILTAVVETGGRVDLVWTGVPG-AAGGYNLYRRTAAQLPSEAVPVImgwTETELTD-GPLPDDTYYYSVEAV 2429
Cdd:COG3401 229 PTTPPSAPTGLTATADTPGSVTLSWDPVTEsDATGYRVYRSNSGDGPFTKVATV---TTTSYTDtGLTNGTTYYYRVTAV 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2430 DIQGYPGLLSAEVPATTDATPPEPPATLTLK-ELGSGINASWPASAGAAV--YRLYQSATGTilpGISRKVAET-TALSR 2505
Cdd:COG3401 306 DAAGNESAPSNVVSVTTDLTPPAAPSGLTATaVGSSSITLSWTASSDADVtgYNVYRSTSGG---GTYTKIAETvTTTSY 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2506 VDNQPDAGAN-TYGITAVDAAGNESAATTAQIGVALPPVSQLTVTRTSLGKAVLNWTSKPGMSYHvyRNGAKVTATALAG 2584
Cdd:COG3401 383 TDTGLTPGTTyYYKVTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASA--ASNPGVSAAVLAD 460
|
410 420
....*....|....*....|....
gi 1278106636 2585 GPYTDNFYNGGTVVYGVSATDGVH 2608
Cdd:COG3401 461 GGDTGNAVPFTTTSSTVTATTTDT 484
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1338-1923 |
1.24e-16 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 86.98 E-value: 1.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1338 SDTYQGSFTFTTGMTNGTWRLSVSGARDLDQNRMGLVDSYSFELDTAPPDDPTVTV--AVPSMTRVVMLPLSGTKDAYAD 1415
Cdd:COG3401 9 LDAGIAASAAANTAVNALSKAGGSGKTILVYLAVVLSVTTKESPGTLLVAAGLSSGggLGTGGRAGTTSGVAAVAVAAAP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1416 IRINGVQRVAATVNTTWSYDYRLSQGAQSLVITSEDAAGNGSSALTYAVTLDTIPPALTINPVTSPTDLDSQTITGRTEI 1495
Cdd:COG3401 89 PTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1496 GAALTVNGTTHVAVNADGTWSYQTPVMSEGV-----NQFTFRADDTAGNfVQKSVSIDYDVSAPQPIPASLLQVDGNGDG 1570
Cdd:COG3401 169 VVSPDTSATAAVATTSLTVTSTTLVDGGGDIepgttYYYRVAATDTGGE-SAPSNEVSVTTPTTPPSAPTGLTATADTPG 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1571 KtVRLSWAGYAEVDVAYYRIYR---ESGSFSNVTSLNpvqtvnaGTSGTaVSGLTKGQTYYFAVVPVDDLGHFDPNVNAK 1647
Cdd:COG3401 248 S-VTLSWDPVTESDATGYRVYRsnsGDGPFTKVATVT-------TTSYT-DTGLTNGTTYYYRVTAVDAAGNESAPSNVV 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1648 PGTPaDTQAPADVTGLHAVSVTEdvnrvNTIVLGWTRNqSDPDVTGQTLYfNAGTGEDGGTPLGAGVN--SYTKNGLSDE 1725
Cdd:COG3401 319 SVTT-DLTPPAAPSGLTATAVGS-----SSITLSWTAS-SDADVTGYNVY-RSTSGGGTYTKIAETVTttSYTDTGLTPG 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1726 TQYTFRVTVKDTDGNESAGAFIQPVTVLRNPANLSAVPWNGKVTLTWDDLPSNLLGYVAGYNVYYSQNPFSYVTGF-TPA 1804
Cdd:COG3401 391 TTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNaVPF 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1805 VRVSATGMGGQAVITGLTNGVPYYFAVTTVNVSGGERKTVTTVSAAPRSDMEPPVIDSINITEGQVITEPYTINVKVKDA 1884
Cdd:COG3401 471 TTTSSTVTATTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDL 550
|
570 580 590
....*....|....*....|....*....|....*....
gi 1278106636 1885 ESAVASLAVDVDGVNLITGTSSSISAFYNIGLQGAIYQN 1923
Cdd:COG3401 551 VSLTTSASSSVSGAGLGSGNLYLITTLGGSLLTTTSTNT 589
|
|
| Beta_helix |
pfam13229 |
Right handed beta helix region; This region contains a parallel beta helix region that shares ... |
18-183 |
2.54e-12 |
|
Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Pssm-ID: 463811 [Multi-domain] Cd Length: 158 Bit Score: 67.43 E-value: 2.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 18 GSRVSGSTVKNNQGRGISIRSDNSAIqdwaIQSSvEISGNGGDygssgsdqdaGIYVYtyhnGTSNIVdISGNVIHDNQD 97
Cdd:pfam13229 10 NATIKNNTISNNGGYGIYLRGSSNAT----IENN-TITNNGGD----------GIEIS----GSSNNT-ISNNTISNNGG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 98 NGILAYtydGTLTPVISNNEIYSSGR-GVYLYsyyyaNASTVMITDNEIHE-GTLGIEIDRNYRsqtlTVEVSRNKVYGH 175
Cdd:pfam13229 70 GGIALR---GSSNNLIENNTISNNGGaGIYLS-----DSSNNTIENNIIHNnGGSGIVIEDSSN----NVTISNNTVTNN 137
|
....*...
gi 1278106636 176 SGVGVKLH 183
Cdd:pfam13229 138 KGAGILIV 145
|
|
| NosD |
COG3420 |
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ... |
28-244 |
8.83e-11 |
|
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];
Pssm-ID: 442646 [Multi-domain] Cd Length: 343 Bit Score: 66.48 E-value: 8.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 28 NNQGRGISIRSDNSAIQDwaiqssVEISGNGGDYgssgSDQDAGIYVYTYHN------------------GTSNIVdISG 89
Cdd:COG3420 67 GGKGTVITITADNVTVRG------LTITGSGDSL----TDDDAGIYVRGADNaviennriennlfgiyleGSDNNV-IRN 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 90 NVIHDNQD------NGILAYTYDGTltpVISNNEIYSSGRGVYLYsyyyaNASTVMITDNEIHEGTLGI--------EID 155
Cdd:COG3420 136 NTISGNRDlradrgNGIHLWNSPGN---VIEGNTISGGRDGIYLE-----FSDNNVIRNNTIRNLRYGIhymysndnLVE 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 156 RNYRSQTLT---------VEVSRNKVYGHSGVGVKLhrDETTDSYgglaatVQYNsIFHNNGNALELEAASVAEVHYNNL 226
Cdd:COG3420 208 GNTFRDNGAgialmyskgNTVRGNTILGNSGYGILL--KESSDSV------IEGN-TISGNGKGIFIYNSNRNTIRGNLF 278
|
250
....*....|....*...
gi 1278106636 227 LRAGSSVYTLSNqSTQNV 244
Cdd:COG3420 279 AGNGIGIHLTAG-SEGNR 295
|
|
| Laminin_G_3 |
pfam13385 |
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
638-787 |
1.55e-10 |
|
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.
Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 62.02 E-value: 1.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 638 DGDHIRVPAAAALDLTETMTVEFLFRNSGGAANGILIGKMDAANtGWAIQLDGSGDLGVNINGS-----VITTGQKYQDG 712
Cdd:pfam13385 1 DGGSDYVTLPDALLPTSDFTVSAWVKPDSLPGWARAIISSSGGG-GYSLGLDGDGRLRFAVNGGnggwdTVTSGASVPLG 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278106636 713 KWHYGAMLRKGTSLTLLIDGQPALNAAIVPGPIS-TSADLYFGARYLAG-NFEGrldqvAVDEVRISDTVRSNEELA 787
Cdd:pfam13385 80 QWTHVAVTYDGGTLRLYVNGVLVGSSTLTGGPPPgTGGPLYIGRSPGGDdYFNG-----LIDEVRIYDRALSAAEIA 151
|
|
| Beta_helix |
pfam13229 |
Right handed beta helix region; This region contains a parallel beta helix region that shares ... |
50-217 |
1.95e-09 |
|
Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Pssm-ID: 463811 [Multi-domain] Cd Length: 158 Bit Score: 58.96 E-value: 1.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 50 SSVEISGNGGDygssgsdqdaGIYVYTYHNGTsnivdISGNVIHDNQDNGILAYTYDGtltPVISNNEIY-SSGRGVYLY 128
Cdd:pfam13229 14 KNNTISNNGGY----------GIYLRGSSNAT-----IENNTITNNGGDGIEISGSSN---NTISNNTISnNGGGGIALR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 129 syyyaNASTVMITDNEIHE-GTLGIEIDRNYrsqtlTVEVSRNKVYGHSGVGVKLhrdettdSYGGLAATVQYNSIFHNN 207
Cdd:pfam13229 76 -----GSSNNLIENNTISNnGGAGIYLSDSS-----NNTIENNIIHNNGGSGIVI-------EDSSNNVTISNNTVTNNK 138
|
170
....*....|
gi 1278106636 208 GNALELEAAS 217
Cdd:pfam13229 139 GAGILIVGGS 148
|
|
| Laminin_G_3 |
pfam13385 |
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
1138-1263 |
2.24e-08 |
|
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.
Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 55.85 E-value: 2.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1138 SDRLEYDASVINPESGTVEFhllW-----YGTDGRILTITDGNGAPVILDIQAGTLILDING-----HALLSSTVLVPGV 1207
Cdd:pfam13385 4 SDYVTLPDALLPTSDFTVSA---WvkpdsLPGWARAIISSSGGGGYSLGLDGDGRLRFAVNGgnggwDTVTSGASVPLGQ 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1278106636 1208 WYHVAFTYGAAGFGLYVNGTLEAGSTTPVDLSAATG--LVIG-EFGGHASTDMTVDNMR 1263
Cdd:pfam13385 81 WTHVAVTYDGGTLRLYVNGVLVGSSTLTGGPPPGTGgpLYIGrSPGGDDYFNGLIDEVR 139
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
214-572 |
2.73e-08 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 60.02 E-value: 2.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 214 EAASVAEVHYNNLLRAGSSVYTLSNQSTQNVNAQENWWGKTTTSEIAAAVYDRYDNSAKGIVDYSNWLTEALGDILVDIS 293
Cdd:COG3401 50 ESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTAT 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 294 RMAISPNNDGVADSTTITANFPQLVDWNLVIAGTAVNETRTNSD--------VFSYTWYGTNDGTAGGTVMPEGNYNATV 365
Cdd:COG3401 130 AVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDtsataavaTTSLTVTSTTLVDGGGDIEPGTTYYYRV 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 366 EARSPADGSLVGSSVTKTLTVDLTGPQSVITngpahGSATSQSSVTFVWSGTDNftpSANLEYAVSWDGAPFSAYSSDTT 445
Cdd:COG3401 210 AATDTGGESAPSNEVSVTTPTTPPSAPTGLT-----ATADTPGSVTLSWDPVTE---SDATGYRVYRSNSGDGPFTKVAT 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 446 SNR-----SGLSQGL-HTFTVKTRDNVGNEETTPESRSFTVDLSGPDPVASLSAVVLSEARVRLDWTASPSTDIGSYVIY 519
Cdd:COG3401 282 VTTtsytdTGLTNGTtYYYRVTAVDAAGNESAPSNVVSVTTDLTPPAAPSGLTATAVGSSSITLSWTASSDADVTGYNVY 361
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1278106636 520 WDNGTGNVNygTPLATVGSTTiNWTSITLAEG-SYRFGVRAVDVAGNSSQPVEV 572
Cdd:COG3401 362 RSTSGGGTY--TKIAETVTTT-SYTDTGLTPGtTYYYKVTAVDAAGNESAPSEE 412
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1775-2165 |
5.30e-08 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 58.86 E-value: 5.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1775 LPSNLLGYVAGYNVYYSQNPFSYVTGFTPAVRVSATGMGGQAVITGLTNGVPYYFAVTTVNVSGGERKTVTTVSAAPRSD 1854
Cdd:COG3401 41 AVVLSVTTKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSP 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1855 MEPPVIDSINITEGQVITEPYTINVKVKDAESAVASLAVDVDGVNLITGTSSSISA------------FYNIGLQGAIYQ 1922
Cdd:COG3401 121 AVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSAtaavattsltvtSTTLVDGGGDIE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1923 NGNHSIRIRTADTLGNQAAYS--FGVMVSGAAPRPPV-LTGTipSGTVSTPTLTSVNGTAEEAQTITLLVNGVQWSQTAV 1999
Cdd:COG3401 201 PGTTYYYRVAATDTGGESAPSneVSVTTPTTPPSAPTgLTAT--ADTPGSVTLSWDPVTESDATGYRVYRSNSGDGPFTK 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2000 VNGAGQFTFAAAAISEGGN-ELKAIASDRRG-SSAPSNSLYVTLDTGAPGGPHSLKAEARAGGVVHFAWSPAAGEIPDRY 2077
Cdd:COG3401 279 VATVTTTSYTDTGLTNGTTyYYRVTAVDAAGnESAPSNVVSVTTDLTPPAAPSGLTATAVGSSSITLSWTASSDADVTGY 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2078 HLYQSVSAFSSATAPGVravdnpgspiTVAETTYLpDNDL----VYYYAVTALDESGNESPISNVVSVAGDRVSPDAVLA 2153
Cdd:COG3401 359 NVYRSTSGGGTYTKIAE----------TVTTTSYT-DTGLtpgtTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLT 427
|
410
....*....|..
gi 1278106636 2154 VDPDRLIEGSVI 2165
Cdd:COG3401 428 ASVDAVPLTDVA 439
|
|
| COG4733 |
COG4733 |
Phage-related protein, tail protein J [Mobilome: prophages, transposons]; |
1457-2018 |
5.72e-08 |
|
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
Pssm-ID: 443767 [Multi-domain] Cd Length: 978 Bit Score: 59.19 E-value: 5.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1457 SSALTYAVTLD---TIPPALTINPVTSPtDLDSQTITGRTEIGAALTVNGTTHVAVNADGTWSYQTP-----------VM 1522
Cdd:COG4733 419 SSVDGRVVTLDrpvTMEAGDRYLRVRLP-DGTSVARTVQSVAGRTLTVSTAYSETPEAGAVWAFGPDeletqlfrvvsIE 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1523 SEGVNQFTFRADDTAGNfvqKSVSID---YDVSAPQPIPASLL------QVDGNGDGKTVRLSWAGYAEVDVAYYRIYRE 1593
Cdd:COG4733 498 ENEDGTYTITAVQHAPE---KYAAIDagaFDDVPPQWPPVNVTtseslsVVAQGTAVTTLTVSWDAPAGAVAYEVEWRRD 574
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1594 SGSFSNVtslnpvqtvnAGTSGT--AVSGLTKGQtYYFAVVPVDDLGHFDPNVNAKPGT-PADTQAPADVTGLHAVSvte 1670
Cdd:COG4733 575 DGNWVSV----------PRTSGTsfEVPGIYAGD-YEVRVRAINALGVSSAWAASSETTvTGKTAPPPAPTGLTATG--- 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1671 dvnRVNTIVLGWTRNQSDPDVTGQTLYFNAGTGEDGGTPLGAGV-NSYTKNGLSDETQYTFRVTVKDTDGNESAgAFIQP 1749
Cdd:COG4733 641 ---GLGGITLSWSFPVDADTLRTEIRYSTTGDWASATVAQALYPgNTYTLAGLKAGQTYYYRARAVDRSGNVSA-WWVSG 716
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1750 VTVLRNPANLSAVPWNGKVTLTWDDLPSNLLGYVAGYNVYYSQNPFSYVTGFTPAVRVSATGMGGQAVITGltngvpyyf 1829
Cdd:COG4733 717 QASADAAGILDAITGQILETELGQELDAIIQNATVAEVVAATVTDVTAQIDTAVLFAGVATAAAIGAEARV--------- 787
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1830 AVTTVNVSGGERKTVTTVSAAPRsdmeppVIDSINITEGQVITEPYTINVKVKDAESAVASLAVDVDGVNLITGTSSSIS 1909
Cdd:COG4733 788 AATVAESATAAAATGTAADAAGD------ASGGVTAGTSGTTGAGDTAASTTRVAAAVVLAGVVVYGDAIIESGNTGDIV 861
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1910 AFYNIGLQGAIYQNGNHSIRIRTADTLGNQAAYSFGVMVSGAAPRppvLTGTIPSGTVSTPTLTSVNGTAEEAQTITLLV 1989
Cdd:COG4733 862 ATGDIASAAAGAVATTVSGTTAADVSAVADSTAASLTAIVIAATT---IIDAIGDGTTREPAGDIGASGGAQGFAVTIVG 938
|
570 580
....*....|....*....|....*....
gi 1278106636 1990 NGVQWSQTAVVNGAGQFTFAAAAISEGGN 2018
Cdd:COG4733 939 SFDGAGAVATVDAGQSVVDGVGTAVEAAN 967
|
|
| NosD |
COG3420 |
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ... |
18-174 |
3.40e-07 |
|
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];
Pssm-ID: 442646 [Multi-domain] Cd Length: 343 Bit Score: 55.31 E-value: 3.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 18 GSRVSGSTVKNNQGrGISI-RSDNSaiqdwaiqssvEISGN---GGDYG-----SSGS--------DQDAGIYVYTyhng 80
Cdd:COG3420 159 GNVIEGNTISGGRD-GIYLeFSDNN-----------VIRNNtirNLRYGihymySNDNlvegntfrDNGAGIALMY---- 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 81 TSNIVdISGNVIHDNQDNGILAYTYDGTltpVISNNEIYSSGRGVYLYsyyyaNASTVMITDNEIHEGTLGIEidrnyrs 160
Cdd:COG3420 223 SKGNT-VRGNTILGNSGYGILLKESSDS---VIEGNTISGNGKGIFIY-----NSNRNTIRGNLFAGNGIGIH------- 286
|
170
....*....|....
gi 1278106636 161 qtLTVEVSRNKVYG 174
Cdd:COG3420 287 --LTAGSEGNRIYG 298
|
|
| CarboxypepD_reg |
pfam13620 |
Carboxypeptidase regulatory-like domain; |
3185-3260 |
7.19e-07 |
|
Carboxypeptidase regulatory-like domain;
Pssm-ID: 433354 [Multi-domain] Cd Length: 81 Bit Score: 49.59 E-value: 7.19e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278106636 3185 VTDSLYENVEAADVSIQHAQvLSIRQDAKTDANGSATFTDLPTGSYNYTVSAPGHKSWMGT-FQVQPGYTTPVEVVL 3260
Cdd:pfam13620 6 VTDPSGAPVPGATVTVTNTD-TGTVRTTTTDADGRYRFPGLPPGTYTVTVSAPGFKTATRTgVTVTAGQTTTLDVTL 81
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
2325-2616 |
1.82e-06 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 53.85 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2325 SFAVSAVDLVGNM--DTVIIQGETffiynNQPPPLDAPILTAVVETGGRVDLVWTGVPGA-AGGYNLYRRTAAQLPSEAV 2401
Cdd:COG3401 299 YYRVTAVDAAGNEsaPSNVVSVTT-----DLTPPAAPSGLTATAVGSSSITLSWTASSDAdVTGYNVYRSTSGGGTYTKI 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2402 PVimGWTETELTD-GPLPDDTYYYSVEAVDIQGYPGLLSAEVPATTDATPPEPPATLTLKELGSGINASWPASAGAAVYR 2480
Cdd:COG3401 374 AE--TVTTTSYTDtGLTPGTTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNP 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2481 LYQSATGTILPGISRKVAETTALSRVDNQPDAGANTYGITAVDAAGNESAATTAQIGVALPPVSQLTVTRTSLGKAVLNW 2560
Cdd:COG3401 452 GVSAAVLADGGDTGNAVPFTTTSSTVTATTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVT 531
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1278106636 2561 TSKPGMSYHVYRNGAKVTATALAGGPYTDNFYNGGTVVYGVSATDGVHESGVREIT 2616
Cdd:COG3401 532 GASPVTVGASTGDVLITDLVSLTTSASSSVSGAGLGSGNLYLITTLGGSLLTTTST 587
|
|
| NosD |
pfam05048 |
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ... |
54-257 |
2.00e-06 |
|
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.
Pssm-ID: 428281 [Multi-domain] Cd Length: 215 Bit Score: 51.65 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 54 ISGNGGdYGSSGSDQDAGIYVYTYHNgtsniVDISGNVIHDNQDNGILAYTYDGTltpvISNNEIYSSGRGVYlysYYYA 133
Cdd:pfam05048 5 ISGDTI-GIYNGLSRGNGIQLWNTEG-----NVISNNDIINSRDGIYLDASNNNT----ITGNRISNLRYGIH---LMNS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 134 NASTvmITDNEIHEGTLGIEIDRNYRSqtltvEVSRNKVYGHSGVGVKLhrdeTTDSYgglaATVQYNSIFHNNGNALEL 213
Cdd:pfam05048 72 NDNT--ISDNVFSGNTAGIALMSSSNN-----TLENNTISGNTNYGILL----SDSSN----NTISNNTISNNNGKGIFL 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1278106636 214 EAASVAEVHYNNLLRAGSSVYTLSN------------QSTQNV---NAQENWWGKTTTS 257
Cdd:pfam05048 137 YNSDYNTITGNRITSNGIGIHFLAGsngntiynnyfiNNSENVkyvGTNDNYWNTTKTT 195
|
|
| Ca_tandemer |
NF033510 |
Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the ... |
1461-1539 |
8.68e-06 |
|
Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the biofilm-associated protein Bap of Acinetobacter baumannii (which can exceed 8000 amino acids in length), the calcium-stabilized ice-binding adhesin of the Antarctic bacterium Marinomonas primoryensis, and the giant calcium-binding adhesin SiiE of Salmonella enterica.
Pssm-ID: 411149 [Multi-domain] Cd Length: 97 Bit Score: 46.90 E-value: 8.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1461 TYAVTLDTIPPALTINPVTSPTDLDS------QTITGRT--EIGAALTV--NGTTHVA-VNADGTWSYQTPV-----MSE 1524
Cdd:NF033510 1 THPVTVDTTAPALTINPVAGDDVLNAaeqgqgLTLSGTTtaEAGQTVTVtlNGKTYTAtVDADGSWSVTVPAadlaaLAD 80
|
90
....*....|....*
gi 1278106636 1525 GVNQFTFRADDTAGN 1539
Cdd:NF033510 81 GTYTVTVTVTDAAGN 95
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1493-2022 |
1.81e-05 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 50.77 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1493 TEIGAALTVNGTTHVAVNADGTWSYQTPVMSEGVNQFTFRADDTAGNFVQKSVSIDYDVSAPQPIPASLLQVDGNGDGKT 1572
Cdd:COG3401 1 TGSSYLTSLDAGIAASAAANTAVNALSKAGGSGKTILVYLAVVLSVTTKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1573 VRLSWAGYAEVDVAYYRIYRESGSFSNVTSLNPVQTVNAGTSGTAVSGLTKGQTYYFAVVPVDDLGHFDPNVNAKPGTPA 1652
Cdd:COG3401 81 AVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1653 DTQAPADVTGLHAVSVTEDVNRVNTIVLGWTRNQSDPDVT-GQTLYFNAGTGEDGGTPLGAGV----------------- 1714
Cdd:COG3401 161 SSVAGAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEpGTTYYYRVAATDTGGESAPSNEvsvttpttppsaptglt 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1715 --------------------------------------------NSYTKNGLSDETQYTFRVTVKDTDGNESAGAFIQPV 1750
Cdd:COG3401 241 atadtpgsvtlswdpvtesdatgyrvyrsnsgdgpftkvatvttTSYTDTGLTNGTTYYYRVTAVDAAGNESAPSNVVSV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1751 TVLRN----PANLSAVPW-NGKVTLTWDDLPSNLlgyVAGYNVYYSQNPfsyvtgFTPAVRVSATGMGGQAVITGLTNGV 1825
Cdd:COG3401 321 TTDLTppaaPSGLTATAVgSSSITLSWTASSDAD---VTGYNVYRSTSG------GGTYTKIAETVTTTSYTDTGLTPGT 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1826 PYYFAVTTVNVSGGErktvttvSAAPRSDMEPPVIDSINITEGQVITEPYTINVKVKDAESAVASLAVDVDGVNLITGTS 1905
Cdd:COG3401 392 TYYYKVTAVDAAGNE-------SAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDT 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1906 SSISAFYNIGLQGAIYQNGN--HSIRIRTADTLGNQAAYSFGVMVSGAAPRPPVLTGTIPSGTVSTPTLTSVNGTAEEAQ 1983
Cdd:COG3401 465 GNAVPFTTTSSTVTATTTDTttANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGD 544
|
570 580 590
....*....|....*....|....*....|....*....
gi 1278106636 1984 TITLLVNGVQWSQTAVVNGAGQFTFAAAAISEGGNELKA 2022
Cdd:COG3401 545 VLITDLVSLTTSASSSVSGAGLGSGNLYLITTLGGSLLT 583
|
|
| Ig_like_BLP2 |
NF040520 |
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ... |
1451-1689 |
2.62e-05 |
|
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.
Pssm-ID: 468522 [Multi-domain] Cd Length: 729 Bit Score: 50.42 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1451 DAAGNGSSALTYAVTLDTIPPAL-TINPVT-------------SPTDLDSQTITGRTEIGAALTV--NGTT--HVAVNAD 1512
Cdd:NF040520 489 DAAGNRSDATDVTGTKDTIAPNKpVLQKVTddvgavkgaiaagGETDDAKPKLSGSGEAKATLTIydNGQAigTVTVGDN 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1513 GTWSYQ-TPVMSEGVNQFTFRADDTAGNFVQKSVSIDYDVSAPQPIPASLlqvdgngdgktvrlswagYAEVDVayyrIY 1591
Cdd:NF040520 569 GKWSFTlDKDLALGKHKITLTQTDAAGNTSEVSDPFTFTVVAPKTASASE------------------QSEVDT----SN 626
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1592 RESGSFSNVTSLNPVQTVNAGTSGTAVSGLTKgqtyyfavVPVDDLghfdpnvnAKPGTPADTQAPADV----TGLHAVS 1667
Cdd:NF040520 627 TETASLADSVGLNTLKLAQETTNETNSQQQES--------VSLDDL--------LKSSSSSESNQIDDVlssqLKPTQTN 690
|
250 260
....*....|....*....|..
gi 1278106636 1668 VTEDVNRVNTIVlgwTRNQSDP 1689
Cdd:NF040520 691 EQSDVNNSSSDV---TTNLEDL 709
|
|
| Glucodextran_B |
pfam09136 |
Glucodextranase, domain B; Members of this family adopt a structure consisting of seven ... |
1471-1550 |
4.67e-05 |
|
Glucodextranase, domain B; Members of this family adopt a structure consisting of seven/eight-strand antiparallel beta-sheets, in a Greek-key topology, similar to the immunoglobulin beta-sandwich fold. They act as cell wall anchors, where they interact with the S-layer present in the cell wall of Gram-positive bacteria by hydrophobic interactions. In glucodextranase, Domain B is buried in the S-layer, and a flexible linker located between domain B and the catalytic unit confers motion to the catalytic unit, which is capable of efficient hydrolysis of the substrates located close to the cell surface.
Pssm-ID: 430428 [Multi-domain] Cd Length: 83 Bit Score: 44.40 E-value: 4.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1471 PALTInpvTSPTDLDSQ-----TITGRT--EIGAALTVNGTThVAVNADGTWSYQTPvMSEGVNQFTFRADDTAGNFVQK 1543
Cdd:pfam09136 1 PELTI---TSPADGLTTnretvTVTGTVadANLDSVTVNGIA-ATVYKDGTFSKRIL-LVEGENVITVIAVDSAGNTVTK 75
|
....*..
gi 1278106636 1544 SVSIDYD 1550
Cdd:pfam09136 76 TITVFAD 82
|
|
| DUF4998 |
pfam16389 |
Domain of unknown function; This family around 200 residues locates in the N-terminal of some ... |
500-577 |
4.72e-05 |
|
Domain of unknown function; This family around 200 residues locates in the N-terminal of some uncharacterized proteins in various Bacteroides and Parabacteroides species. The function of this family remains unknown.
Pssm-ID: 435316 [Multi-domain] Cd Length: 199 Bit Score: 47.31 E-value: 4.72e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1278106636 500 RVRLDWTASPSTDIGSYVIYWDNGTGNVNYgtPLATVGST-TINWTSITLAEGSYRFGVRAVDVAGNSSQPVEVGVTVY 577
Cdd:pfam16389 34 RAKLTWLLVSDPKIVKAKIFWNNGLDSLEV--PITRTAGVdTISVIIDNLPEGSYTFSIRTYDKKGNSSVPSEVTGTVY 110
|
|
| Beta_helix |
pfam13229 |
Right handed beta helix region; This region contains a parallel beta helix region that shares ... |
113-245 |
6.56e-05 |
|
Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Pssm-ID: 463811 [Multi-domain] Cd Length: 158 Bit Score: 45.86 E-value: 6.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 113 ISNNEIYSSGR-GVYLYsyyyaNASTVMITDNEIHE-GTLGIEIDRNYRSQtltveVSRNKVYGHSGVGVKLhrdettds 190
Cdd:pfam13229 13 IKNNTISNNGGyGIYLR-----GSSNATIENNTITNnGGDGIEISGSSNNT-----ISNNTISNNGGGGIAL-------- 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1278106636 191 YGGLAATVQYNSIFHNNGNALELEAASVAEVHYNNLLR-AGSSVYTLSNQSTQNVN 245
Cdd:pfam13229 75 RGSSNNLIENNTISNNGGAGIYLSDSSNNTIENNIIHNnGGSGIVIEDSSNNVTIS 130
|
|
| LamGL |
smart00560 |
LamG-like jellyroll fold domain; |
912-987 |
6.62e-05 |
|
LamG-like jellyroll fold domain;
Pssm-ID: 214722 [Multi-domain] Cd Length: 133 Bit Score: 45.49 E-value: 6.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 912 TAPSAITPGQFVYVAGTYDGSA--IKLFVNGTQVAQSAY--SLPINQDPVDHILGGAvANSTDFLDGVLDEVRLSGRPLT 987
Cdd:smart00560 53 TGATADWIGVWVHLAGVYDGGAgkLSLYVNGVEVATSETqpSPSSGNLPQGGRILLG-GAGGENFSGRLDEVRVYNRALT 131
|
|
| COG4733 |
COG4733 |
Phage-related protein, tail protein J [Mobilome: prophages, transposons]; |
385-823 |
9.69e-05 |
|
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
Pssm-ID: 443767 [Multi-domain] Cd Length: 978 Bit Score: 48.40 E-value: 9.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 385 TVDLTGPQSVITNGPAHGSA------TSQSSVTFVWSgtdnfTPSANLEYAVSW---DGAPFSAYSSDTTSNR-SGLSQG 454
Cdd:COG4733 523 AFDDVPPQWPPVNVTTSESLsvvaqgTAVTTLTVSWD-----APAGAVAYEVEWrrdDGNWVSVPRTSGTSFEvPGIYAG 597
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 455 LHTFTVKTRDNVGNEETTPESRSFTV--DLSGPDPVASLSAVVLSEArVRLDWTASPSTDIGSYVIYWDNGTGNVNYGTP 532
Cdd:COG4733 598 DYEVRVRAINALGVSSAWAASSETTVtgKTAPPPAPTGLTATGGLGG-ITLSWSFPVDADTLRTEIRYSTTGDWASATVA 676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 533 LATVGSTTINWTSITlAEGSYRFGVRAVDVAGNSSQPVEVGVTVylKGLVDPISFLFADSHTVALWKmnEPNPTDTVLDV 612
Cdd:COG4733 677 QALYPGNTYTLAGLK-AGQTYYYRARAVDRSGNVSAWWVSGQAS--ADAAGILDAITGQILETELGQ--ELDAIIQNATV 751
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 613 MGLHHGIPTGTRVIQSQNGNARLFIDGDHIRVPAAAALDLTETMTVEFLFRNSGGAANGILIGKMDAANTGWAIQLDGS- 691
Cdd:COG4733 752 AEVVAATVTDVTAQIDTAVLFAGVATAAAIGAEARVAATVAESATAAAATGTAADAAGDASGGVTAGTSGTTGAGDTAAs 831
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 692 ----GDLGVNINGSVITTGQKYQDGKWHY-----------GAMLRKGTSLTLLIDGQPALNAAIVPGPISTSADLYFGAR 756
Cdd:COG4733 832 ttrvAAAVVLAGVVVYGDAIIESGNTGDIvatgdiasaaaGAVATTVSGTTAADVSAVADSTAASLTAIVIAATTIIDAI 911
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278106636 757 YLAGNFEGRLDQVAVDEVRISDTVRSNEELASSAARLNNEGLFVMDDDTLALWLLNETQGTVAVDQT 823
Cdd:COG4733 912 GDGTTREPAGDIGASGGAQGFAVTIVGSFDGAGAVATVDAGQSVVDGVGTAVEAANGTETAAGGGSQ 978
|
|
| Ig_like_BLP2 |
NF040520 |
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ... |
1375-1539 |
9.83e-05 |
|
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.
Pssm-ID: 468522 [Multi-domain] Cd Length: 729 Bit Score: 48.50 E-value: 9.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1375 DSYSFELDTAPPDDPTVTVAVPSMTrvvmlpLSGTKDAYADIRI-NGVQRVAATV------NTTWSYDYRLSQGAqSLVI 1447
Cdd:NF040520 158 DDSNGPVDITPPATPTATLADDTQT------ITGKAEANAKIYIkDATGKVIATGqadasgNYTIKLDQPLVNGN-KVNV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1448 TSEDAAGNGSSALTYAVTLDTIPPaltiNPVTSPTDLDSQTITGRTEIGAALTVN-------GTthVAVNADGTWSYQ-- 1518
Cdd:NF040520 231 TAIDAAGNASKATVVTGTKDTIAP----DAPQAQLNADGTIVTGKTEANAKVSVYdadgkllGT--VTANKEGLYSIKvs 304
|
170 180
....*....|....*....|.
gi 1278106636 1519 TPVMSEGVNqfTFRADDTAGN 1539
Cdd:NF040520 305 PPLTSDKGG--TVIAEDAAGN 323
|
|
| LamG |
cd00110 |
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ... |
636-754 |
1.21e-04 |
|
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Pssm-ID: 238058 [Multi-domain] Cd Length: 151 Bit Score: 45.10 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 636 FIDGDHIRVPAAAALdlTETMTVEFLFRNSggAANGILIGKMDAANTGW-AIQLDGsGDLGVNINGS----VITTGQKYQ 710
Cdd:cd00110 4 FSGSSYVRLPTLPAP--RTRLSISFSFRTT--SPNGLLLYAGSQNGGDFlALELED-GRLVLRYDLGsgslVLSSKTPLN 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1278106636 711 DGKWHYGAMLRKGTSLTLLIDGQPALNAAIVPGP--ISTSADLYFG 754
Cdd:cd00110 79 DGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSalLNLDGPLYLG 124
|
|
| Big_13 |
pfam19077 |
Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in ... |
1967-2043 |
3.89e-04 |
|
Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in bacterial cell surface proteins.
Pssm-ID: 465968 [Multi-domain] Cd Length: 102 Bit Score: 42.25 E-value: 3.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1967 VSTPTLTsvnGTAEEAQTITLLV--NGVQWSQTAVVNGAGQFTF-AAAAISEGGNELKAIASDRRGSSAPSNSLYVTLDT 2043
Cdd:pfam19077 26 DTTPTFT---GTNEDGDVVTVTVsiDGNGVTGTATAGADGNWSFtPPAALADGTYTLTVTVTDIAGNTATSSPLSFTIDT 102
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
1-396 |
8.74e-04 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 45.32 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1 GNDGMEVYAQYSAQVLAGSRVSGSTVKNNQGRGISIR----SDNSAIQDWAIQSSVEISGNGGDYGSSGSDQDAGIYVYT 76
Cdd:COG3468 28 GGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGggggGAGSGGGLAGAGSGGTGGNSTGGGGGNSGTGGTGGGGGG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 77 YHNGTSNIVDISGNVIHDNQDNGILAYTYDGTLTPVISNNEIYSSGRGVYLYSYYYANA--STVMITDNEIHEGTLGIEI 154
Cdd:COG3468 108 GGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGGgsGGGGGAGGGGGGGAGGSGG 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 155 DRNYRSQTLTVEVSRNKVYGHSGVGVKLHRDETTDSYGGLAATVQYNSIFHNNGNALE--LEAASVAEVHYNNLLRAGSS 232
Cdd:COG3468 188 AGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGGGGSAggTGGGGLTGGGAAGTGGGGGG 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 233 VYTLSNQSTQNVNAQENWWGKTTTSEIAAAVYDRYDNSAKGIVDYSNWLTEALGDILVDISRMAISPNNDGVADSTTITA 312
Cdd:COG3468 268 TGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGGGSNAGGGSGGGGGGGGGGGGGGTTLNGAG 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 313 NFPQLVDWNLVIAGTAVNETRTNSDVFSYTWYGTNDGTAG----GTVMPEGNYNATVEARSPADGSLVGSSVTKTLTV-- 386
Cdd:COG3468 348 SAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGsdgvGTGLTTGGTGNNGGGGVGGGGGGGLTLTGGTLTVng 427
|
410
....*....|
gi 1278106636 387 DLTGPQSVIT 396
Cdd:COG3468 428 NYTGNNGTLV 437
|
|
| Laminin_G_2 |
pfam02210 |
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G ... |
668-755 |
1.03e-03 |
|
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.
Pssm-ID: 460494 [Multi-domain] Cd Length: 126 Bit Score: 41.64 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 668 AANGILIGKMDAANTGWAIQLDGsGDLGVNING-----SVITTGQKYQDGKWHYGAMLRKGTSLTLLIDGQPA--LNAAI 740
Cdd:pfam02210 5 QPNGLLLYAGGGGSDFLALELVN-GRLVLRYDLgsgpeSLLSSGKNLNDGQWHSVRVERNGNTLTLSVDGQTVvsSLPPG 83
|
90
....*....|....*
gi 1278106636 741 VPGPISTSADLYFGA 755
Cdd:pfam02210 84 ESLLLNLNGPLYLGG 98
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1755-1838 |
1.71e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 39.91 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1755 NPANLSAVPWNG-KVTLTWDDLPS-NLLGYVAGYNVYYSQNPFSYVtgftpavRVSATGMGGQAVITGLTNGVPYYFAVT 1832
Cdd:smart00060 3 PPSNLRVTDVTStSVTLSWEPPPDdGITGYIVGYRVEYREEGSEWK-------EVNVTPSSTSYTLTGLKPGTEYEFRVR 75
|
....*.
gi 1278106636 1833 TVNVSG 1838
Cdd:smart00060 76 AVNGAG 81
|
|
| LamG |
smart00282 |
Laminin G domain; |
657-756 |
1.87e-03 |
|
Laminin G domain;
Pssm-ID: 214598 [Multi-domain] Cd Length: 132 Bit Score: 41.17 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 657 TVEFLFRNSggAANGILIGKMDAANTGW-AIQLDGsGDLGVNIN-----GSVITTGQKYQDGKWHYGAMLRKGTSLTLLI 730
Cdd:smart00282 1 SISFSFRTT--SPNGLLLYAGSKGGGDYlALELRD-GRLVLRYDlgsgpARLTSDPTPLNDGQWHRVAVERNGRSVTLSV 77
|
90 100
....*....|....*....|....*...
gi 1278106636 731 DGQPALNAAIVPGP--ISTSADLYFGAR 756
Cdd:smart00282 78 DGGNRVSGESPGGLtiLNLDGPLYLGGL 105
|
|
| Beta_helix |
pfam13229 |
Right handed beta helix region; This region contains a parallel beta helix region that shares ... |
17-118 |
2.09e-03 |
|
Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Pssm-ID: 463811 [Multi-domain] Cd Length: 158 Bit Score: 41.62 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 17 AGSRVSGSTVKNNQGRGISIR-SDNSAIQDWaiqssvEISGNGGD--YGSSGSD-----------QDAGIYVYtyhnGTS 82
Cdd:pfam13229 55 SNNTISNNTISNNGGGGIALRgSSNNLIENN------TISNNGGAgiYLSDSSNntienniihnnGGSGIVIE----DSS 124
|
90 100 110
....*....|....*....|....*....|....*.
gi 1278106636 83 NIVDISGNVIHDNQDNGILAYTYDGTLTpvISNNEI 118
Cdd:pfam13229 125 NNVTISNNTVTNNKGAGILIVGGSSNNT--VENNTF 158
|
|
| COG4733 |
COG4733 |
Phage-related protein, tail protein J [Mobilome: prophages, transposons]; |
2003-2354 |
2.35e-03 |
|
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
Pssm-ID: 443767 [Multi-domain] Cd Length: 978 Bit Score: 44.17 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2003 AGQFTFAAAAISeggnelkaiASDRRGSSAPSNSLYVTLDTGAPGGPHSLKAEARAGGvVHFAWSPAAGEIPDRYHLYQS 2082
Cdd:COG4733 596 AGDYEVRVRAIN---------ALGVSSAWAASSETTVTGKTAPPPAPTGLTATGGLGG-ITLSWSFPVDADTLRTEIRYS 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2083 VSA-FSSATAPGVRAvdnPGSPITVAETTylpdNDLVYYYAVTALDESGNESPISNVVSVAGDRVSPDAVLAVDPDRLIE 2161
Cdd:COG4733 666 TTGdWASATVAQALY---PGNTYTLAGLK----AGQTYYYRARAVDRSGNVSAWWVSGQASADAAGILDAITGQILETEL 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2162 GSVIITVATTEDLSELP--FVSVIPAGV-----APIPVSMKASGANRWTGTFTVQKQMAHGAAAITYSGKDFVGNRSAVA 2234
Cdd:COG4733 739 GQELDAIIQNATVAEVVaaTVTDVTAQIdtavlFAGVATAAAIGAEARVAATVAESATAAAATGTAADAAGDASGGVTAG 818
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2235 TGETSFFIDHQSPKTVITLSPSAPFSVKTDLNVGITVRFDeTVSGTPLLDLNTPDGSRNQIALTAQPDGSWTGTQRFTLS 2314
Cdd:COG4733 819 TSGTTGAGDTAASTTRVAAAVVLAGVVVYGDAIIESGNTG-DIVATGDIASAAAGAVATTVSGTTAADVSAVADSTAASL 897
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1278106636 2315 MLGGQEIGeCSFAVSAVDLVGNMDTVIIQGETFFIYNNQP 2354
Cdd:COG4733 898 TAIVIAAT-TIIDAIGDGTTREPAGDIGASGGAQGFAVTI 936
|
|
| MJ0795 |
COG1361 |
S-layer protein MJ0795, predicted component of type IV pili-like system [General function ... |
2978-3259 |
2.99e-03 |
|
S-layer protein MJ0795, predicted component of type IV pili-like system [General function prediction only];
Pssm-ID: 440972 [Multi-domain] Cd Length: 409 Bit Score: 43.15 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2978 VSKNDSIVVPIKLTNPGETKLTNLTYSVAGSN-AEI-TGAVNGAGDLQAGETRTVNVTISVGNPAvNTGLATVTAR---- 3051
Cdd:COG1361 36 VAPGEEVTLTVTITNDGTLTARNVTVELEGDYpFEVkSGEQSVGGSLPPGQSVTVTFTVTVPEDA-EPGTYPIPVTvsys 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 3052 ---TAEGAQASMKIELILYEaQPYLSASPSFVEGFVHPGEQAIRGVTFTNEGFKDLINARISGPSTSWIGLD-------- 3120
Cdd:COG1361 115 ygyTDRTETETYTVTVKVEG-EPRFEVVSVTSPDSLTPGDTGTLTLTIKNTGTGTAKNVTVTLTSPSGDLTDlepgprpa 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 3121 ----------------RSRAVGTVPAGAGFTLGVVMTPPAGTQDGIYTDSFTVEADNH------PPYIYYVQVH------ 3172
Cdd:COG1361 194 tnvvvvlsspvspvgsNSVALGTLEPGESATFTFKVDVSEDAEPGPYPLPLTVTYRDEdgdtysDTVTIGVYVApkadfe 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 3173 -------VTSANTGNVTFSVTDSLYENVEAADVSIQHAQVLSIRQDAKT----DANGSATFT-------DLPTGSYNYTV 3234
Cdd:COG1361 274 venvestITAGETVTITITVTNTGNETAKNVVARLSADDPLSSLDDEAFigdlAPGESATVTftvsassDATPGTYPITV 353
|
330 340
....*....|....*....|....*
gi 1278106636 3235 SAPGHKSWMGTFQVQPgYTTPVEVV 3259
Cdd:COG1361 354 TIRYDDDDGNTQLSDT-ITVPVEVT 377
|
|
| COG4733 |
COG4733 |
Phage-related protein, tail protein J [Mobilome: prophages, transposons]; |
2300-2635 |
3.26e-03 |
|
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
Pssm-ID: 443767 [Multi-domain] Cd Length: 978 Bit Score: 43.40 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2300 QPDGSWTGTQRFTLSM--LGGQEIGECSFAVSAVDLVGNM------DTVIIQGETffiynnqPPPLDAPILTAVVETGGr 2371
Cdd:COG4733 573 RDDGNWVSVPRTSGTSfeVPGIYAGDYEVRVRAINALGVSsawaasSETTVTGKT-------APPPAPTGLTATGGLGG- 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2372 VDLVWTGVPGAAG-GYNLYRRTAAQLPSEAVPVIMGWTETELTDGPLPDDTYYYSVEAVDIQGYPGllSAEVPATTDATP 2450
Cdd:COG4733 645 ITLSWSFPVDADTlRTEIRYSTTGDWASATVAQALYPGNTYTLAGLKAGQTYYYRARAVDRSGNVS--AWWVSGQASADA 722
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2451 PEPPATLTLKELGSGINASWPASAGAAVYRLYQSATGTILPGISRKVAETTALSRVDNQPDAGANTYGITAVDAAGNESA 2530
Cdd:COG4733 723 AGILDAITGQILETELGQELDAIIQNATVAEVVAATVTDVTAQIDTAVLFAGVATAAAIGAEARVAATVAESATAAAATG 802
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 2531 ATTAQIGVALppvsqLTVTRTSLGKAVLNWTSKPGMSYHVYRNGAKVTATALAGGpYTDNFYNGGTVVYGVSATDGVHES 2610
Cdd:COG4733 803 TAADAAGDAS-----GGVTAGTSGTTGAGDTAASTTRVAAAVVLAGVVVYGDAII-ESGNTGDIVATGDIASAAAGAVAT 876
|
330 340
....*....|....*....|....*
gi 1278106636 2611 GVREITLPKVSLSMDSNQTLRRGAP 2635
Cdd:COG4733 877 TVSGTTAADVSAVADSTAASLTAIV 901
|
|
| MJ1470 |
COG5306 |
Uncharacterized conserved protein MJ1470, contains DUF2341 domain, predicted component of type ... |
802-951 |
3.35e-03 |
|
Uncharacterized conserved protein MJ1470, contains DUF2341 domain, predicted component of type IV pili-like system [General function prediction only];
Pssm-ID: 444105 [Multi-domain] Cd Length: 529 Bit Score: 43.35 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 802 DDDTLALWLLNETQGTVAVDQTGLHSGTYAGTQFVQSSFGFGrAIYSGTDRVVIPAFAlsgsRLSLEAV--FSIKA-VTA 878
Cdd:COG5306 133 DFFDALVWHFAEAGGPPQDSTAYGNHAVGAGASVDGGLIGSG-AQFDGTSPLVVPASP----SLALDAGggFTFSAwIKP 207
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1278106636 879 HTQTVIGNFANGKSYALDLVSGKPRFRINNQSVT---APSAITPGQFVYVAGTYDGSAIKLFVNGTQVAQSAYSLP 951
Cdd:COG5306 208 AQLDGNAVLYSRRDGANGLDNGAPFVEVGGAGGTrsaAGAPLAAGTWHHLAVVADAGKVTLYVNGVAAGSLDASLP 283
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1755-1846 |
7.52e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 38.25 E-value: 7.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 1755 NPANLSAVPWN-GKVTLTWDDlPSNLLGYVAGYNVYYSQNPFSYVTGFTPaVRVSATgmggQAVITGLTNGVPYYFAVTT 1833
Cdd:cd00063 3 PPTNLRVTDVTsTSVTLSWTP-PEDDGGPITGYVVEYREKGSGDWKEVEV-TPGSET----SYTLTGLKPGTEYEFRVRA 76
|
90
....*....|....*..
gi 1278106636 1834 VNVSG----GERKTVTT 1846
Cdd:cd00063 77 VNGGGesppSESVTVTT 93
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
485-566 |
7.91e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 37.98 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278106636 485 PDPVASLSAVVLSEARVRLDWTASPSTDIGSYVIYWDNGTGNVNYGTPLATVGSTTINWTSITLAEGS-YRFGVRAVDVA 563
Cdd:smart00060 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTeYEFRVRAVNGA 80
|
...
gi 1278106636 564 GNS 566
Cdd:smart00060 81 GEG 83
|
|
| Big_13 |
pfam19077 |
Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in ... |
1488-1548 |
9.84e-03 |
|
Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in bacterial cell surface proteins.
Pssm-ID: 465968 [Multi-domain] Cd Length: 102 Bit Score: 38.40 E-value: 9.84e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1278106636 1488 TITGRTEIGAALTV------NGTT-HVAVNADGTWSYQTPV-MSEGVNQFTFRADDTAGNFVQKS---VSID 1548
Cdd:pfam19077 30 TFTGTNEDGDVVTVtvsidgNGVTgTATAGADGNWSFTPPAaLADGTYTLTVTVTDIAGNTATSSplsFTID 101
|
|
| |
