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Conserved domains on  [gi|1282180982|gb|ATY49928|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Melithreptus albogularis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.02e-164

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.14  E-value: 1.02e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   1 MNPQAKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  81 TGQWDITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPTLLTTMAVL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|..
gi 1282180982 321 THISIAILTTLSITLLPLSPIL 342
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMI 342
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.02e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.14  E-value: 1.02e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   1 MNPQAKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  81 TGQWDITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPTLLTTMAVL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|..
gi 1282180982 321 THISIAILTTLSITLLPLSPIL 342
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMI 342
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.95e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.07  E-value: 1.95e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQWDITQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  91 HPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPT------LLTTMAVLSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 165 GGWMGLNQTQIRKILAFSSISHLGWMTIILS----YSPKLTLLNFCLYILMTAAVFL-----TLNTTKVTKLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1282180982 236 KAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-298 4.71e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 96.34  E-value: 4.71e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   9 FIISLLFGTT---ITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALVLF-SSMTNAWhTGQ 83
Cdd:COG1007   104 FYALLLFATLgmmLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGS 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  84 WDITQM-----THPTSCLILTAAIAM-------KLGLAPFHFWFPEVLQGSSLTTGLLLSTVMK----FPPITLLFLTSN 147
Cdd:COG1007   183 LNLAGIaaalaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFP 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 148 SLNP---TLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-ILSYSP---KLTLLNFCLYILMTAAVFLTL- 219
Cdd:COG1007   263 GLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPlgvSAALFYLLAYLFMNLGAFAVIl 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 220 ----NTTKVTKLSTLMTTWTKAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLR 295
Cdd:COG1007   343 llsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422


                  ...
gi 1282180982 296 LAY 298
Cdd:COG1007   423 VVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 9-297 1.82e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.93  E-value: 1.82e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   9 FIISLLF---GTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQW 84
Cdd:TIGR01770 104 FYILLLFallGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  85 DITQMTHPTSCLILT------------AAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMK---FPPITLLFLT---- 145
Cdd:TIGR01770 184 NFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfg 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 146 -SNSLNPTLLTtMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKL----TLLNFCLYILMTAAVFLTLN 220
Cdd:TIGR01770 264 fSEAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLS 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 221 TTKVTK------LSTLMTTWTKAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYL 294
Cdd:TIGR01770 343 LLRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422


                  ...
gi 1282180982 295 RLA 297
Cdd:TIGR01770 423 RVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.02e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.14  E-value: 1.02e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   1 MNPQAKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  81 TGQWDITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPTLLTTMAVL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|..
gi 1282180982 321 THISIAILTTLSITLLPLSPIL 342
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMI 342
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-340 8.50e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 394.94  E-value: 8.50e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   1 MNPQAKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  81 TGQWDITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSlNPTLLTTMAVL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|.
gi 1282180982 321 -THISIAILTTLSITLLPLSP 340
Cdd:MTH00135  320 qLTLPLAISTTATLMLLPLTP 340
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-342 1.78e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 386.20  E-value: 1.78e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   1 MNPQAKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  81 TGQWDITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPTLLTTMAVL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|..
gi 1282180982 321 THISIAILTTLSITLLPLSPIL 342
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTI 342
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-342 4.45e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 347.22  E-value: 4.45e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   1 MNPQAKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  81 TGQWDITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPTLLTTMAVL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYCTAITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                         330       340
                  ....*....|....*....|....
gi 1282180982 319 KPTHISIAILTTLSITLLPLSPIL 342
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPML 343
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-342 3.72e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 304.20  E-value: 3.72e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   1 MNPQAKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  81 TGQWDITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPTLLTTMAVL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|..
gi 1282180982 321 THISIAILTTLSITLLPLSPIL 342
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQL 342
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 3.33e-86

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 263.71  E-value: 3.33e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   1 MNPQAKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  81 TGQWDITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPTLLTTMAVL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330
                  ....*....|....*.
gi 1282180982 321 THISIAILTTLSITLL 336
Cdd:MTH00041  321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 5.18e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 193.12  E-value: 5.18e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   1 MNPQAKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  81 tgqwdITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLfltSNSLNPTLLTTMAVL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYcTAITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|..
gi 1282180982 321 THISIaILTTLSITLLPLSPIL 342
Cdd:MTH00160  312 SLILN-FLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-298 8.22e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 163.90  E-value: 8.22e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   5 AKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  85 DITqmthptscLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLL-FLTSNSLNPTLLTTMAVLSTA 163
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsNFLDLYWLAYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 164 LGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNtTKVTKLSTLMTTWTKAPSLNTM 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1282180982 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAY 298
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFF 290
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 1.05e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 161.10  E-value: 1.05e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   7 LIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  87 TQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPTLLTTMAVLSTALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 167 WMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSLNTMLLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYcTAITLPPHTTNhmkqwHTNKPTHISIA 326
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                         330
                  ....*....|....
gi 1282180982 327 ILTTLSITLLPLSP 340
Cdd:MTH00011  317 ILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-302 1.02e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 150.59  E-value: 1.02e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   8 IFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  88 qMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPitLLFLTSNSLNPTLLTTMAVLSTALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 168 MGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTLNTTKVTKLSTLMTTWTKAPSLNTMLLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1282180982 248 LLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAYCTAI 302
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 3.19e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 104.34  E-value: 3.19e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  13 LLFGTTITISSNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQATASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  79 WHTGQWDITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNptLLTTMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 159 VLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILSY----SPKLTLLNFCLYILMTAAVF---LTLNTTK--VTKLST 229
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFsiiLALNVYKnlIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1282180982 230 LMttwTKAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRL 296
Cdd:MTH00196  240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.95e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.07  E-value: 1.95e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQWDITQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  91 HPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPT------LLTTMAVLSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 165 GGWMGLNQTQIRKILAFSSISHLGWMTIILS----YSPKLTLLNFCLYILMTAAVFL-----TLNTTKVTKLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1282180982 236 KAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 3.67e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 96.62  E-value: 3.67e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   8 IFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  87 ----TQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPTLLTtmAVLST 162
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 163 ALGGWMGLNQTQIRKILAFSSISHLG---WMTIILSY-SPKLTLLNFCLYILMTAAVFLTLNTTKVTK--LSTLMTTWTK 236
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFeSIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1282180982 237 APSLNTMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-298 4.71e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 96.34  E-value: 4.71e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   9 FIISLLFGTT---ITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALVLF-SSMTNAWhTGQ 83
Cdd:COG1007   104 FYALLLFATLgmmLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGS 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  84 WDITQM-----THPTSCLILTAAIAM-------KLGLAPFHFWFPEVLQGSSLTTGLLLSTVMK----FPPITLLFLTSN 147
Cdd:COG1007   183 LNLAGIaaalaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFP 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 148 SLNP---TLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-ILSYSP---KLTLLNFCLYILMTAAVFLTL- 219
Cdd:COG1007   263 GLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPlgvSAALFYLLAYLFMNLGAFAVIl 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 220 ----NTTKVTKLSTLMTTWTKAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLR 295
Cdd:COG1007   343 llsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422


                  ...
gi 1282180982 296 LAY 298
Cdd:COG1007   423 VVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 9-297 1.82e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.93  E-value: 1.82e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   9 FIISLLF---GTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQW 84
Cdd:TIGR01770 104 FYILLLFallGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  85 DITQMTHPTSCLILT------------AAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMK---FPPITLLFLT---- 145
Cdd:TIGR01770 184 NFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfg 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 146 -SNSLNPTLLTtMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKL----TLLNFCLYILMTAAVFLTLN 220
Cdd:TIGR01770 264 fSEAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLS 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 221 TTKVTK------LSTLMTTWTKAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYL 294
Cdd:TIGR01770 343 LLRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422


                  ...
gi 1282180982 295 RLA 297
Cdd:TIGR01770 423 RVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.91e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 86.03  E-value: 1.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  14 LFGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQWDITQMTHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  93 TS------------CLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMK---FPPITLLFLTS-NSLNPT---L 153
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLRLLVVAfGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 154 LTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKL----TLLNFCLYILMTAAVF-----LTLNTTKV 224
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFgvislLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1282180982 225 TKLSTLMTTWTKAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRL 296
Cdd:PRK05777  353 ESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 5.61e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 81.35  E-value: 5.61e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  13 LLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQWDITQMTH- 91
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  92 ---------PTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMK--------------FPPITLLFLTsns 148
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTkvgvyailrvltllFGADPALFLG--- 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 149 lnpTLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYI----LMTAAVFLT----LN 220
Cdd:COG0651   273 ---TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiER 349

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1282180982 221 TTKVTKLSTLMTTWTKAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAI 282
Cdd:COG0651   350 ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 7-267 1.77e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 80.29  E-value: 1.77e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   7 LIFIISLlfGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQATASALVLFSSMTN 77
Cdd:MTH00198  193 LVLIVGL--GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALY 270

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  78 AWHTGQ----WDITQMTHPTS----------CLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFppITLLF 143
Cdd:MTH00198  271 FGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYIL 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 144 LTSNSLNPTLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLN----FCLYILMTAAVFLTL 219
Cdd:MTH00198  349 LTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALASFTVI 428

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1282180982 220 ---------------------NTTKVTKLSTLMTTWTKAPSLNTMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198  429 ctleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-216 2.66e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.42  E-value: 2.66e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   7 LIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLVQATASALVL--FSSM--TNAWHT 81
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  82 GQWDI------TQMTHPTSCLI----LTAAIAMKLGLAPFHFWFPEVLQGS-----------SLTTGLLLSTVMkfppIT 140
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRI----FD 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 141 LLFLTSNSLNPTLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIL-------SYSPKLTLLNFclYILMTA 213
Cdd:CHL00049  270 IPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIivgdsndGYASMITYMLF--YIFMNL 347


                  ...
gi 1282180982 214 AVF 216
Cdd:CHL00049  348 GTF 350
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 4.71e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 63.58  E-value: 4.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALVLFSSmtnAWHTGQWDITQMTHPTSCL-------------IL 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  99 TAAIAMKLGLAPFHFWFPEVLQG--SSLTTGLLLSTVMKFPPI--TLLFLTSNSLNPT----LLTTMAVLSTALGGWMGL 170
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 171 NQTQIRKILAFSSISHLGWMTI-----ILSY-SPKLT-------------LLNFCLY---ILMTA-AVFLTLNTTKVTKL 227
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggiyhIVNHALYkalLFLTAgAVIYETGTRNLNEL 386

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1282180982 228 STLMTTwtkAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAI 282
Cdd:PRK08376  387 GGLART---MPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAM 438
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 8.56e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 59.68  E-value: 8.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  50 PRAIEAATKYFLVQATASALVLF-SSMTNAWHTGQWDITQM-----THPTSCLILT-----AAIAMKLGLAPFHFWFPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIalaliTSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 119 LQGSSLTTGLLLSTVMKFP----PITLLFLTSNSLNP---TLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMT 191
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316


                  .
gi 1282180982 192 I 192
Cdd:PRK02504  317 I 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 4.62e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.40  E-value: 4.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  49 HPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQW--DI-----TQMTHPTSCLILTA---AIAMKLGLAPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIaelaaAPLPLTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 119 LQGSSLTTGLLLSTVM---------KFPpITLLFLTSNSLNPTLLTtMAVLSTALGGWMGLNQTQIRKILAFSSISHLGW 189
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                  ...
gi 1282180982 190 MTI 192
Cdd:COG1008   314 VLL 316
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 2.83e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 49.56  E-value: 2.83e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1282180982 291 FFYLRLAYCTAITLPPHTTNHMKQWHTNKPTHI-SIAILTTLSITLLPLSP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 13-192 2.13e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 52.24  E-value: 2.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  13 LLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSS----------MTNAWHTG 82
Cdd:PRK06458  117 FLFTMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAI 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  83 QW-DITQMTHPTSCLILTAAIAM-------KLGLAPFHFWFPEVLQG-----SSLTTGLLLST----VMKFPPITLLFLT 145
Cdd:PRK06458  197 LWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNValyaVLRYYILIDAAIG 276

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1282180982 146 SNSLNPtLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:PRK06458  277 SDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 2.82e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 51.80  E-value: 2.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFS-SMTNAwHTGQWDITQMTH--PTSCLILTA------AIA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 104 MKLGLAPFHFWFPEVLQG-SSLTTGLLLSTVMKFP--PITLLFLT-------SNSLNPTLLTTMAVLSTALGGWMGLNQT 173
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 174 QIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYI-----------LMTAAVFLTLNTTKVTKLSTLMTtwtKAPSLNT 242
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalfLAAGAIEVTYGTRRLSELSGLGR---RMPLTAA 370

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1282180982 243 MLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAISLLSLLSLFFYLRLAY 298
Cdd:PRK08375  371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 4.37e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.54  E-value: 4.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982   2 NPQAKLIFIISLLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHpRAIEAATKYFLVQATASALVLFSSMTNAWHT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  82 GQWDIT-------QMTHPTSCLI----LTAAIAMKLGLAPFHFWFPE-----------VLQGSSLTTG-LLLSTVMKFPP 138
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaYGFLLVLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 139 ITLLFLT-----SNSLNPTLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYI---- 209
Cdd:PRK08668  255 GTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVfnha 334

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1282180982 210 LMTAAVFLTLNT----TKVTKLSTLMTTWTKAPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAAI 282
Cdd:PRK08668  335 LFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 1.66e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 49.55  E-value: 1.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  50 PRAIEAATKYFLVQATASALVLFSSMTNAWHTG------QWDITQMTHPTSCLILTA---AIAMKLGLAPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAffiAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 119 ---LQGSSLTTGLLLST----VMKFpPITLLFLTSNSLNPtLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMT 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309


                  .
gi 1282180982 192 I 192
Cdd:TIGR01972 310 L 310
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-194 1.73e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 49.38  E-value: 1.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  23 SNHWIMAWTGLEINTLAILPLISKSHH-PRAIEAATKYFLVQATASALVLFSSMTNAWHTGQWDITQM-----THPTSCL 96
Cdd:COG1009   130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  97 ILTAAIAM------KLGLAPFHFWFPEVLQG----SSL-------TTGLLLstVMKFPPITllfltsnSLNPTLLTTMAV 159
Cdd:COG1009   210 LTLILLLLllgafgKSAQFPLHFWLPDAMEGptpvSALlhaatmvKAGVYL--LARLSPLF-------ALSPVWLTVVAI 280

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1282180982 160 --LSTAL-GGWMGLNQTQIRKILAFSSISHLGWMTIIL 194
Cdd:COG1009   281 igAITALfAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 3.86e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 48.77  E-value: 3.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  96 LILTAAIAmKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLL------FLTSNSLNPTLLTtMAVLSTALGGWMG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 170 LNQTQIRKILAFSSISHLGWMTIILSYSPK------LTLLnfCLYILMTAAVFLTL-------NTTKVTKLSTLmttWTK 236
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVgiidhstGTRDIRKLSGL---GRR 360

                         170       180
                  ....*....|....*....|....*..
gi 1282180982 237 APSLNTMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  361 QPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-219 1.77e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.29  E-value: 1.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  13 LLFGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  87 TQMTHPTSCL---ILTAA-------IAMKLGLAPFHFWFPEV-LQGSSLTTGLLLSTVMKFPPITLLFLTS----NSLNP 151
Cdd:PRK08676  191 TELAAHASLLspsVLGASflfifigFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqSGAAE 270

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1282180982 152 T---LLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYILMTAAVFLTL 219
Cdd:PRK08676  271 QfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-282 1.98e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 46.45  E-value: 1.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 110 PFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLFltsnSLNP---------TLLTTMAVLSTALGGWMGLNQTQIRKILA 180
Cdd:PRK12647  213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLA----RLNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLILA 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 181 FSSISHLGWMTIILSYSPKLTLLNFCLYI----LMTAAVFLTL-------NTTKVTKLSTLmttWTKAPSLNTMLLLTLL 249
Cdd:PRK12647  289 YSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAgiidhetGTRDITKLGGL---RRAMPITAAAALLAAL 365

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1282180982 250 SLAGLPPLTGFLPKWLIIQELTKQD---MALTAAAI 282
Cdd:PRK12647  366 SMAGLPPLFGFLAKELIYEALLEAPlwsLILTVAAV 401
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 3.55e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.46  E-value: 3.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  55 AATKYFLVQATASALVLFSSMTNAWHTGQWDI---TQMTH----PTSCLILTA---AIAMKLGLAPFHFWFPEVLQGSSL 124
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlplSTQLLLLAPilvGFGIKIPLVPFHTWLPDAHVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 125 TTGLLLSTVM-KFPPITLL------FLTSNSLNPTLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYS 197
Cdd:PRK06473  238 PVSVLLAGVLlKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                  ....*.
gi 1282180982 198 PKLTLL 203
Cdd:PRK06473  318 TPLSIL 323
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 3.67e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.19  E-value: 3.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  50 PRAIEAATKYFLVQATASALVLFSSMTNAWH----TGQWDITQ-MTHPTSC-------LILTAAIAMKLGLAPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADlLNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 118 VLQ-----GSSLTTGLLLST----VMKFPpITLLFLTSNSLNPtLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMgaygLLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                  ....
gi 1282180982 189 WMTI 192
Cdd:PRK05846  315 FVTL 318
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 7.19e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 44.25  E-value: 7.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  34 EINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQWDITQM-----THPTSCLILTAAIAMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIhnallVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 109 A------PFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLF--------LTSNSLNPTLLTTMAVLSTALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 175 IRKILAFSSISHLGWMTIILSYSPKLT----LLNFCLYILMTAAVFL----TLNTTKVTKLSTLMTTWTKAPSLNTMLLL 246
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260
                  ....*....|....*....|..
gi 1282180982 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQ 391
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 1.01e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.95  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFS-----SMTNAWHTGqwDITQMTHP--------TSCLILT 99
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 100 AAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLS----TVMKFPPITL--------LFLTSNSLNpTLLTTMAVLSTALGGW 167
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIvydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 168 MGLNQTQIRKILAFSSISHLGWMTIILSYSPKLTLLNFCLYI----LMTAAVFLT-------LNTTKVTKLSTLmttWTK 236
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVsgsisyhFGTTKLEDCLNL---WKS 372

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1282180982 237 APSLNTMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.77e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 43.28  E-value: 1.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  48 HHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQWDITQMTHPTS---------------CLILTAAiAMKLGLAPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 113 FWFPEVLQGSSLTTGLLLSTVMKFPPITLLFLTSNSLNPT-----LLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 188 GWMTIILSYS-----------PKLTLLNF-----CLYiLMTAAVFLTLNTTKVTKLSTLMTtwtKAPSLNTMLLLTLLSL 251
Cdd:PRK12649  315 AYLMTMYGYTtyhepglgvaaATFHLLNHatfkaCLF-LVAGIVAHEAATRDIRKLGGLRK---EMPITFIVASIAALAM 390

                         250
                  ....*....|..
gi 1282180982 252 AGLPPLTGFLPK 263
Cdd:PRK12649  391 AGIPPLNGFLSK 402
PRK12650 PRK12650
DUF4040 family protein;
29-190 2.49e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.11  E-value: 2.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  29 AWtglEINTLAILPLISKSHhPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQWDITQMTHPTSCL---ILTAAIAMK 105
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 106 LGLA--------PFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLL--FLTSNSLNPT---LLTTMAVLSTALGGWMGLNQ 172
Cdd:PRK12650  214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLlrFSPVFHDVAVwnwLLIIVGMITALMGAVFAVQK 293

                         170
                  ....*....|....*...
gi 1282180982 173 TQIRKILAFSSISHLGWM 190
Cdd:PRK12650  294 TDLKKLTAYSTVSQLGWI 311
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-294 1.36e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 40.32  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWHTGQWDIT--QMTHPTSCLILTAAIAMKLGLAP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 111 FHFWFPEVLQGSSLTTGLLLS-TVMKFP--PITLLFLTSNSLNPtLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSgVVVKAGvfPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 188 GWMTIILSYSPKLTLLnfclYILMTAAVFL---TLNTTKVTKL-STLMTTWTKAPslntmLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK07234  282 GFILAAPLVGGLYALA----HGLVKSTLFLcagALPSRNFTELiSQMLGIGKWIP-----LTMASFSIAGFPLLAGFVSK 352

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1282180982 264 WLIIQELTK-QDMALTAAAISLLSLLSLFFYL 294
Cdd:PRK07234  353 VLTLKNLLPwQAIALNLAAVGTAASFWKFIFL 384
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 1.95e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.90  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 101 AIAMKLGLAPFHFWFPEV-----LQGSSLTTGLLLS------TVMKFPpitLLFLTSNSLNPTLLtTMAVLSTALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglVRLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                          90       100
                  ....*....|....*....|....*
gi 1282180982 170 LNQTQIRKILAFSSISHLGWMTIIL 194
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITL 339
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 68-218 2.37e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 39.55  E-value: 2.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  68 ALVLFSSMTNAWHTGQWDITQMTHPTSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLL--FLT 145
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLirLSP 259

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1282180982 146 SNSLNPTLLTTMAVL---STALGGWMGLNQTQIRKILAFSSISHLGWMTIILS-YSPKLTLLNFCLYILMTAAVFLT 218
Cdd:MTH00211  260 LFQNNQLILGAVLLLgalTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGlNQPQLAFLHICTHAFFKAMLFMC 336
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 2.56e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.62  E-value: 2.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  52 AIEAATKYFLVQATASALVLFSSMTNAWHTGQWDITQMTHPTSCLILTAAIAMKLGLA----------------PFHFWF 115
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 116 PEVLQGSSLTTGLLLSTVMKFPPItllFLTSN-----SLNPTLLTTMAVLSTA---LGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGV---FLVARmypvfEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQL 327


                  ...
gi 1282180982 188 GWM 190
Cdd:PRK07376  328 GYM 330
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 5.65e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.54  E-value: 5.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  55 AATKYFLVQATASALVLFSSMTNAWHTGQWD------ITQMTHPTSCLILTAAI----AMKLGLAPFHFWFPEVLQGSSL 124
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 125 TTGLLLSTVM-KFPPITL------LFLTSNSLNPTLLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILSYS 197
Cdd:PRK07363  238 AVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                  ....*.
gi 1282180982 198 PKLTLL 203
Cdd:PRK07363  318 TQLSLL 323
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 75-217 6.34e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 38.35  E-value: 6.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  75 MTNAW---HTGQWDITQM-------THPTSCLILTAAiaMKLGLAPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLLF- 143
Cdd:MTH00066  182 LSMAWlamNTNSWELQQIfllndnsTLPLLGLILAAA--GKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIr 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982 144 ---LTSNslNPTLLTT---MAVLSTALGGWMGLNQTQIRKILAFSSISHLGWM--TIILSYsPKLTLLNFCLYILMTAAV 215
Cdd:MTH00066  260 fhpLLEN--NQTALTIclcLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMmvTIGLNQ-PQLAFFHICTHAFFKAML 336


                  ..
gi 1282180982 216 FL 217
Cdd:MTH00066  337 FL 338
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 6.47e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.09  E-value: 6.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1282180982  55 AATKYFLVQATASALVLFSSMTNAWHTGQ--WDITQ--MTHPTSCLILTA------AIAMKLGLAPFHFWFPEVLQGSSL 124
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAElgAKSYPLALELLLyagfliAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1282180982 125 TTGLLLSTVM-KFPPITLLFLTSNSLNPT------LLTTMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:PRK12561  218 PVSMILAGVLlKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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