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Conserved domains on  [gi|12848131|dbj|BAB27840|]
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unnamed protein product [Mus musculus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1003384)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 12-294 1.33e-20

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 91.97  E-value: 1.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131    12 LRAAGNQSFRNGQYAEASALYERALRLlqargsadpEEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRR 91
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131    92 ASAYEALEKYALAYVDYkTVLQI-----DNSVASALEgiNRITRALMDSLGPEWRLKLPPIPVVP--------VSAQKRW 158
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIidgfrNEQSAQAVE--RLLKKFAESKAKEILETKPENLPSVTfvgnylqsFRPKPRP 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   159 NSLPSDNH--KETAK------TKSKEATATKSRVPSAGDVERAKALKEEGNDLVK-----------KGNHKKAIEKYSES 219
Cdd:TIGR00990 278 AGLEDSNEldEETGNgqlqlgLKSPESKADESYEEAARAFEKALDLGKLGEKEAIalnlrgtfkclKGKHLEALADLSKS 357

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12848131   220 LLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLSDISSLLQIEPRN 294
Cdd:TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 12-294 1.33e-20

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 91.97  E-value: 1.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131    12 LRAAGNQSFRNGQYAEASALYERALRLlqargsadpEEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRR 91
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131    92 ASAYEALEKYALAYVDYkTVLQI-----DNSVASALEgiNRITRALMDSLGPEWRLKLPPIPVVP--------VSAQKRW 158
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIidgfrNEQSAQAVE--RLLKKFAESKAKEILETKPENLPSVTfvgnylqsFRPKPRP 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   159 NSLPSDNH--KETAK------TKSKEATATKSRVPSAGDVERAKALKEEGNDLVK-----------KGNHKKAIEKYSES 219
Cdd:TIGR00990 278 AGLEDSNEldEETGNgqlqlgLKSPESKADESYEEAARAFEKALDLGKLGEKEAIalnlrgtfkclKGKHLEALADLSKS 357

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12848131   220 LLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLSDISSLLQIEPRN 294
Cdd:TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
189-297 1.64e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.32  E-value: 1.64e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 189 DVERAKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRA 268
Cdd:COG0457   4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                        90       100
                ....*....|....*....|....*....
gi 12848131 269 QAYKALKDYKSSLSDISSLLQIEPRNGPA 297
Cdd:COG0457  84 LALQALGRYEEALEDYDKALELDPDDAEA 112
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 11-120 2.05e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.55  E-value: 2.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   11 ELRAAGNQSFRNGQYAEASALYERALRLlqarGSADPEeesvLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLR 90
Cdd:PLN03088   4 DLEDKAKEAFVDDDFALAVDLYTQAIDL----DPNNAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75

                         90       100       110
                 ....*....|....*....|....*....|
gi 12848131   91 RASAYEALEKYALAyvdyKTVLQIDNSVAS 120
Cdd:PLN03088  76 KGTACMKLEEYQTA----KAALEKGASLAP 101
TPR_1 pfam00515
Tetratricopeptide repeat;
229-260 1.51e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 1.51e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 12848131   229 TYSNRALCHLVLKQYKEAVKDCTEALKLDGKN 260
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 229-260 1.66e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.66e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 12848131    229 TYSNRALCHLVLKQYKEAVKDCTEALKLDGKN 260
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 12-294 1.33e-20

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 91.97  E-value: 1.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131    12 LRAAGNQSFRNGQYAEASALYERALRLlqargsadpEEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRR 91
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131    92 ASAYEALEKYALAYVDYkTVLQI-----DNSVASALEgiNRITRALMDSLGPEWRLKLPPIPVVP--------VSAQKRW 158
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIidgfrNEQSAQAVE--RLLKKFAESKAKEILETKPENLPSVTfvgnylqsFRPKPRP 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   159 NSLPSDNH--KETAK------TKSKEATATKSRVPSAGDVERAKALKEEGNDLVK-----------KGNHKKAIEKYSES 219
Cdd:TIGR00990 278 AGLEDSNEldEETGNgqlqlgLKSPESKADESYEEAARAFEKALDLGKLGEKEAIalnlrgtfkclKGKHLEALADLSKS 357

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12848131   220 LLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLSDISSLLQIEPRN 294
Cdd:TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 155-278 7.95e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 71.94  E-value: 7.95e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   155 QKRWNSLPSDNHKETAKTKSKE------ATATKSRVPSAGDVER-----------------------AKALKEEGNDLVK 205
Cdd:TIGR00990  60 QQQRESKPKISKKERRKRKQAEketegkTEEKKSTAPKNAPVEPadelpeidessvanlseeerkkyAAKLKEKGNKAYR 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12848131   206 KGNHKKAIEKYSESLLCSSlESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYK 278
Cdd:TIGR00990 140 NKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
189-297 1.64e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.32  E-value: 1.64e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 189 DVERAKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRA 268
Cdd:COG0457   4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                        90       100
                ....*....|....*....|....*....
gi 12848131 269 QAYKALKDYKSSLSDISSLLQIEPRNGPA 297
Cdd:COG0457  84 LALQALGRYEEALEDYDKALELDPDDAEA 112
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
191-278 1.96e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.85  E-value: 1.96e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 191 ERAKALKEEGNDLVKKGNHKKAIEKYSESL-LCSSLeSATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQ 269
Cdd:COG4785  71 DLAQLYYERGVAYDSLGDYDLAIADFDQALeLDPDL-AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149


                ....*....
gi 12848131 270 AYKALKDYK 278
Cdd:COG4785 150 ALYYLGRYE 158
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-125 5.37e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.78  E-value: 5.37e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-------DPDDAEALY-NLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 12848131  87 PLLRRASAYEALEKYALAYVDYKTVLQIDNSVASALEGI 125
Cdd:COG0457  78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNL 116
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
193-308 6.54e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.40  E-value: 6.54e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 193 AKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYK 272
Cdd:COG0457  42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 12848131 273 ALKDYKSSLSDISSLLQIEPRNGPAQKLRQEVNQNM 308
Cdd:COG0457 122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
54-278 7.81e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.40  E-value: 7.81e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131  54 YSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAYEALEKYALAYVDYKTVLQIDNSVASALEGInritralm 133
Cdd:COG0457  11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL-------- 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 134 dslgpewrlklppipvvpvsaqkrwnslpsdnhketaktkskeatatksrvpsagdverakalkeeGNDLVKKGNHKKAI 213
Cdd:COG0457  83 ------------------------------------------------------------------GLALQALGRYEEAL 96

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12848131 214 EKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYK 278
Cdd:COG0457  97 EDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2-117 1.58e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.15  E-value: 1.58e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   2 APKLSDSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEeSVLYSNRAACYLKDGNCTDCIKDCTSALALV 81
Cdd:COG4785  66 ALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL-------DPDL-AEAYNNRGLAYLLLGDYDAALEDFDRALELD 137

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 12848131  82 PFSIKPLLRRASAYEALEKYALAYVDYKTVLQIDNS 117
Cdd:COG4785 138 PDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN 173
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-134 2.14e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 2.14e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG0457  40 DDAEALYNLGLAYLRLGRYEEALADYEQALEL-------DPDDAEALN-NLGLALQALGRYEEALEDYDKALELDPDDAE 111

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 12848131  87 PLLRRASAYEALEKYALAYVDYKTVLQIDNSVASALEGINRITRALMD 134
Cdd:COG0457 112 ALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 14-278 4.11e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 4.11e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131  14 AAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRAS 93
Cdd:COG2956  13 FKGLNYLLNGQPDKAIDLLEEALEL-------DPETVEAHL-ALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131  94 AYEALEKYALAYVDYKTVLQIDNSVASALEGINRITRAlmdslgpewrlklppipvvpvsaQKRWNslpsdnhketaktk 173
Cdd:COG2956  85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQ-----------------------EGDWE-------------- 127

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 174 skEATATKSRVPSAGDvERAKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEA 253
Cdd:COG2956 128 --KAIEVLERLLKLGP-ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERA 204

                       250       260
                ....*....|....*....|....*
gi 12848131 254 LKLDGKNVKAFYRRAQAYKALKDYK 278
Cdd:COG2956 205 LEQDPDYLPALPRLAELYEKLGDPE 229
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 5-132 4.18e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.15  E-value: 4.18e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   5 LSDSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFS 84
Cdd:COG3914  74 LLLLAALLELAALLLQALGRYEEALALYRRALAL-------NPDNAEALF-NLGNLLLALGRLEEALAALRRALALNPDF 145

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 12848131  85 IKPLLRRASAYEALEKYALAYVDYKTVLQID-------NSVASALEGINRITRAL 132
Cdd:COG3914 146 AEAYLNLGEALRRLGRLEEAIAALRRALELDpdnaealNNLGNALQDLGRLEEAI 200
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 191-298 8.85e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.38  E-value: 8.85e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 191 ERAKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQA 270
Cdd:COG3914  76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                        90       100
                ....*....|....*....|....*...
gi 12848131 271 YKALKDYKSSLSDISSLLQIEPRNGPAQ 298
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDNAEAL 183
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 191-294 1.99e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 1.99e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 191 ERAKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQA 270
Cdd:COG4783  36 DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115

                        90       100
                ....*....|....*....|....
gi 12848131 271 YKALKDYKSSLSDISSLLQIEPRN 294
Cdd:COG4783 116 YRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 191-298 2.45e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 2.45e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 191 ERAKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQA 270
Cdd:COG3914 110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189

                        90       100
                ....*....|....*....|....*...
gi 12848131 271 YKALKDYKSSLSDISSLLQIEPRNGPAQ 298
Cdd:COG3914 190 LQDLGRLEEAIAAYRRALELDPDNADAH 217
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 176-292 3.11e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 3.11e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 176 EATATKSRVPSAGDVERAKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALK 255
Cdd:COG5010  37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 12848131 256 LDGKNVKAFYRRAQAYKALKDYKSSLSDISSLLQIEP 292
Cdd:COG5010 117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 7-131 4.82e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 4.82e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG4235  15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-------DPDNADALL-DLAEALLAAGDTEEAEELLERALALDPDNPE 86

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 12848131  87 PLLRRASAYEALEKYALAYVDYKTVLQIDNSVASALEGINRITRA 131
Cdd:COG4235  87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 186-309 8.70e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 8.70e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 186 SAGDVERA-----KALKEEGND----------LVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDC 250
Cdd:COG2956  88 KAGLLDRAeelleKLLELDPDDaealrllaeiYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 12848131 251 TEALKLDGKNVKAFYRRAQAYKALKDYKSSLSDISSLLQIEPRNGPAQKLRQEVNQNMN 309
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 7-115 1.10e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.91  E-value: 1.10e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVlYSNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG3914 110 DNAEALFNLGNLLLALGRLEEALAALRRALAL-------NPDFAEA-YLNLGEALRRLGRLEEAIAALRRALELDPDNAE 181

                        90       100
                ....*....|....*....|....*....
gi 12848131  87 PLLRRASAYEALEKYALAYVDYKTVLQID 115
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALELD 210
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 11-120 2.05e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.55  E-value: 2.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   11 ELRAAGNQSFRNGQYAEASALYERALRLlqarGSADPEeesvLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLR 90
Cdd:PLN03088   4 DLEDKAKEAFVDDDFALAVDLYTQAIDL----DPNNAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75

                         90       100       110
                 ....*....|....*....|....*....|
gi 12848131   91 RASAYEALEKYALAyvdyKTVLQIDNSVAS 120
Cdd:PLN03088  76 KGTACMKLEEYQTA----KAALEKGASLAP 101
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
203-293 3.15e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 3.15e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 203 LVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKdCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLS 282
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                        90
                ....*....|.
gi 12848131 283 DISSLLQIEPR 293
Cdd:COG3063  81 YLERALELDPS 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 191-309 3.40e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.87  E-value: 3.40e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 191 ERAKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQA 270
Cdd:COG4783   2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 12848131 271 YKALKDYKSSLSDISSLLQIEPRNGPAQKLRQEVNQNMN 309
Cdd:COG4783  82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 193-306 4.48e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.30  E-value: 4.48e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 193 AKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYK 272
Cdd:COG4235  17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                        90       100       110
                ....*....|....*....|....*....|....
gi 12848131 273 ALKDYKSSLSDISSLLQIEPRNGPAQKLRQEVNQ 306
Cdd:COG4235  97 QQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-115 8.47e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 8.47e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG4783  36 DNPEAFALLGEILLQLGDLDEAIVLLHEALEL-------DPDEPEARL-NLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                        90       100
                ....*....|....*....|....*....
gi 12848131  87 PLLRRASAYEALEKYALAYVDYKTVLQID 115
Cdd:COG4783 108 AYLRLARAYRALGRPDEAIAALEKALELD 136
COG3899 COG3899
Predicted ATPase [General function prediction only];
9-122 8.61e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 44.08  E-value: 8.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131    9 VEELRAAGNQSFRNGQYAEASALYERALRLLQARgsADPEEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPL 88
Cdd:COG3899  705 ARLLLRAARRALARGAYAEALRYLERALELLPPD--PEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAA 782

                         90       100       110
                 ....*....|....*....|....*....|....
gi 12848131   89 LRRASAYEAlekyALAYVDYKTVLQIDNSVASAL 122
Cdd:COG3899  783 LRHGNPPAS----ARAYANLGLLLLGDYEEAYEF 812
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 6-132 1.11e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 1.11e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   6 SDSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSI 85
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEKALEL-------DPDNPEAFA-LLGEILLQLGDLDEAIVLLHEALELDPDEP 72

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 12848131  86 KPLLRRASAYEALEKYALAYVDYKTVLQIDNSVASALEGINRITRAL 132
Cdd:COG4783  73 EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-132 1.45e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 1.45e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLLQargsadpeEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG2956 108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 12848131  87 PLLRRASAYEALEKYALAYVDYKTVLQIDNSVASALEGINRITRAL 132
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225
TPR_1 pfam00515
Tetratricopeptide repeat;
229-260 1.51e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 1.51e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 12848131   229 TYSNRALCHLVLKQYKEAVKDCTEALKLDGKN 260
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 229-260 1.66e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.66e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 12848131    229 TYSNRALCHLVLKQYKEAVKDCTEALKLDGKN 260
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
4-113 2.89e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 41.41  E-value: 2.89e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131   4 KLSDSVEELRAAGNQSFRNGQYAEASALYERALRLLQArgsadpEEESVLYSnRAACYLKDGNCTDCIKDCTSALALVP- 82
Cdd:COG4700  84 EFADTVQNRVRLADALLELGRYDEAIELYEEALTGIFA------DDPHILLG-LAQALFELGRYAEALETLEKLIAKNPd 156

                        90       100       110
                ....*....|....*....|....*....|...
gi 12848131  83 --FSIKPLLrRASAYEALEKYALAYVDYKTVLQ 113
Cdd:COG4700 157 fkSSDAHLL-YARALEALGDLEAAEAELEALAR 188
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
23-144 3.43e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.53  E-value: 3.43e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131  23 GQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAYEALEKYA 102
Cdd:COG0457  90 GRYEEALEDYDKALEL-------DPDDAEALY-NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 12848131 103 LAYVDYKTVLQIDNSVASALEGINRITRALMDSLGPEWRLKL 144
Cdd:COG0457 162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
20-117 4.15e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 4.15e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131  20 FRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKdCTSALALVPFSIKPLLRRASAYEALE 99
Cdd:COG3063   3 LKLGDLEEAEEYYEKALEL-------DPDNADALN-NLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG 73

                        90
                ....*....|....*...
gi 12848131 100 KYALAYVDYKTVLQIDNS 117
Cdd:COG3063  74 DYDEALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 20-115 4.98e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 4.98e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131  20 FRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAYEALE 99
Cdd:COG5010  65 NKLGDFEESLALLEQALQL-------DPNNPELYY-NLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136

                        90
                ....*....|....*.
gi 12848131 100 KYALAYVDYKTVLQID 115
Cdd:COG5010 137 QDDEAKAALQRALGTS 152
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 212-278 6.10e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 40.93  E-value: 6.10e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 12848131  212 AIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYK 278
Cdd:PLN03088  21 AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 16-122 6.24e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 6.24e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131  16 GNQSFRNGQYAEASALYERALRllqargsADPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAY 95
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALK-------LDPDCARALL-LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222

                        90       100
                ....*....|....*....|....*..
gi 12848131  96 EALEKYALAYVDYKTVLQIDNSVASAL 122
Cdd:COG2956 223 EKLGDPEEALELLRKALELDPSDDLLL 249
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
19-115 8.18e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.90  E-value: 8.18e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131  19 SFRNGQYAEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAYEAL 98
Cdd:COG4785  41 LADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLL 120

                        90
                ....*....|....*..
gi 12848131  99 EKYALAYVDYKTVLQID 115
Cdd:COG4785 121 GDYDAALEDFDRALELD 137
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
192-301 1.13e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.51  E-value: 1.13e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 192 RAKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESAtYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAY 271
Cdd:COG4785  39 IALADLALALAAAALAAAALAAERIDRALALPDLAQL-YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAY 117

                        90       100       110
                ....*....|....*....|....*....|
gi 12848131 272 KALKDYKSSLSDISSLLQIEPRNGPAQKLR 301
Cdd:COG4785 118 LLLGDYDAALEDFDRALELDPDYAYAYLNR 147
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 198-300 2.84e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 2.84e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 198 EEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDY 277
Cdd:COG2956  13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                        90       100
                ....*....|....*....|...
gi 12848131 278 KSSLSDISSLLQIEPRNGPAQKL 300
Cdd:COG2956  93 DRAEELLEKLLELDPDDAEALRL 115
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 211-298 8.10e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 35.75  E-value: 8.10e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12848131 211 KAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLSDISSLLQI 290
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                ....*...
gi 12848131 291 EPRNGPAQ 298
Cdd:COG4235  81 DPDNPEAL 88
TPR_12 pfam13424
Tetratricopeptide repeat;
20-66 8.65e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 34.67  E-value: 8.65e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 12848131    20 FRNGQYAEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDGN 66
Cdd:pfam13424  14 RRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGR 60
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
191-261 9.40e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 36.82  E-value: 9.40e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 12848131 191 ERAKALKEEGNDLVKKGNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNV 261
Cdd:COG4785 105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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