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Conserved domains on  [gi|1315891737|gb|AUG98001|]
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cytochrome b, partial (mitochondrion) [Taeniopoda cf. auricornis 333TauGcf]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-141 4.97e-98

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 285.52  E-value: 4.97e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00156  138 NLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFK 217

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00156  218 DLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 278
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-141 4.97e-98

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 285.52  E-value: 4.97e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00156  138 NLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFK 217

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00156  218 DLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 278
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-139 1.11e-43

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 147.24  E-value: 1.11e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEK----IPFHP 75
Cdd:COG1290   159 GLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHP 238

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1315891737  76 YFTFKDsiTFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 139
Cdd:COG1290   239 YYTVKD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 60-141 1.61e-29

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 104.26  E-value: 1.61e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737  60 NPLGLNGNIEKIPFHPYFTFKDSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 139
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80


                  ..
gi 1315891737 140 KL 141
Cdd:cd00290    81 KL 82
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-106 2.31e-26

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 96.93  E-value: 2.31e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTF 79
Cdd:pfam13631  63 GILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAV 142

                          90       100
                  ....*....|....*....|....*..
gi 1315891737  80 KDSITFILMMSLLIMLCLINPYLLGDP 106
Cdd:pfam13631 143 KMLLFFLITVALLIGLAQINPIWLGGP 169
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 89-141 2.66e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.10  E-value: 2.66e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1315891737  89 MSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-141 4.97e-98

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 285.52  E-value: 4.97e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00156  138 NLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFK 217

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00156  218 DLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 278
CYTB MTH00145
cytochrome b; Provisional
 1-141 4.06e-85

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 253.67  E-value: 4.06e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00145  149 NLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIK 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00145  229 DLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKL 289
CYTB MTH00191
cytochrome b; Provisional
 1-141 7.17e-85

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 252.53  E-value: 7.17e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00191  145 NLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYK 224

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00191  225 DILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKL 285
CYTB MTH00131
cytochrome b; Provisional
 1-141 2.71e-83

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 248.80  E-value: 2.71e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00131  148 NLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYK 227

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00131  228 DLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKL 288
CYTB MTH00119
cytochrome b; Provisional
 1-141 3.04e-83

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 248.66  E-value: 3.04e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00119  149 NLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYK 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00119  229 DLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKL 289
CYTB MTH00074
cytochrome b; Provisional
 1-141 7.90e-82

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 245.36  E-value: 7.90e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00074  149 NLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYK 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00074  229 DLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKL 289
CYTB MTH00100
cytochrome b; Provisional
 1-141 8.18e-80

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 239.93  E-value: 8.18e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00100  148 NLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIK 227

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00100  228 DILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 288
CYTB MTH00016
cytochrome b; Validated
 1-141 1.23e-78

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 236.88  E-value: 1.23e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00016  149 NLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSK 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00016  229 DIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKL 289
CYTB MTH00034
cytochrome b; Validated
 1-141 1.82e-76

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 231.52  E-value: 1.82e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00034  148 NLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTK 227

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00034  228 DLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKL 288
CYTB MTH00224
cytochrome b; Provisional
 1-141 1.44e-66

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 206.31  E-value: 1.44e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00224  149 NLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIK 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00224  229 DALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKL 289
CYTB MTH00022
cytochrome b; Validated
 1-141 6.70e-65

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 201.85  E-value: 6.70e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00022  147 NLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSK 226

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00022  227 DWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKL 287
CYTB MTH00053
cytochrome b; Provisional
 1-141 3.09e-64

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 200.32  E-value: 3.09e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00053  149 NLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLK 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00053  229 DLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKL 289
CYTB MTH00086
cytochrome b; Provisional
 1-141 2.04e-52

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 168.96  E-value: 2.04e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00086  137 SLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNK 216

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMsLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00086  217 DAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKV 276
CYTB MTH00033
cytochrome b; Provisional
 1-141 2.01e-47

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 157.02  E-value: 2.01e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00033  145 NLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIK 224

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1315891737  81 DSITFILMMSLLIMLClINPY---LLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00033  225 DILGFLILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKL 287
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-139 1.11e-43

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 147.24  E-value: 1.11e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEK----IPFHP 75
Cdd:COG1290   159 GLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHP 238

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1315891737  76 YFTFKDsiTFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 139
Cdd:COG1290   239 YYTVKD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
CYTB MTH00046
cytochrome b; Validated
 2-141 2.85e-36

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 127.41  E-value: 2.85e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   2 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNI-EKIPFHPYFTFK 80
Cdd:MTH00046  140 IVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVK 219

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891737  81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:MTH00046  220 DLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKI 280
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 60-141 1.61e-29

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 104.26  E-value: 1.61e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737  60 NPLGLNGNIEKIPFHPYFTFKDSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 139
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80


                  ..
gi 1315891737 140 KL 141
Cdd:cd00290    81 KL 82
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-106 2.31e-26

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 96.93  E-value: 2.31e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTF 79
Cdd:pfam13631  63 GILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAV 142

                          90       100
                  ....*....|....*....|....*..
gi 1315891737  80 KDSITFILMMSLLIMLCLINPYLLGDP 106
Cdd:pfam13631 143 KMLLFFLITVALLIGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-59 2.18e-20

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 82.42  E-value: 2.18e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSN 59
Cdd:cd00284   142 NLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-57 3.20e-18

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 76.65  E-value: 3.20e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891737   1 NLLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTG 57
Cdd:pfam00033 133 NLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
111-141 1.19e-15

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 67.50  E-value: 1.19e-15
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1315891737 111 PANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKL 31
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 89-141 7.64e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 51.33  E-value: 7.64e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1315891737  89 MSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:COG5679    49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKL 96
petD CHL00058
cytochrome b6/f complex subunit IV
 90-141 1.17e-07

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 48.07  E-value: 1.17e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1315891737  90 SLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:CHL00058   49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKL 95
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 89-141 2.66e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.10  E-value: 2.66e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1315891737  89 MSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 141
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
PRK03735 PRK03735
cytochrome b6; Provisional
 4-62 1.20e-05

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 43.16  E-value: 1.20e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891737   4 SAIPYLGMDLVQWVWGGFAVDNATLNRFFTFH-FMLPFVIAAMAAIHLFFLHQTGSNNPL 62
Cdd:PRK03735  164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 5-62 2.44e-05

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 42.02  E-value: 2.44e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1315891737   5 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFH-FMLPFVIAAMAAIHLFFLHQTGSNNPL 62
Cdd:CHL00070  157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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