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Conserved domains on  [gi|1333886215|ref|NP_001346912|]
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sperm-associated antigen 1 isoform 2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 545-636 4.52e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


:

Pssm-ID: 464012  Cd Length: 91  Bit Score: 90.80  E-value: 4.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 545 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 623
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1333886215 624 FKTMLTLINKGQK 636
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
3-105 6.96e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 6.96e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   3 YTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:COG4785    96 FDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175

                          90       100
                  ....*....|....*....|....
gi 1333886215  82 LAKKTLSEVERDLKNSEPVSELQT 105
Cdd:COG4785   176 ERALWLYLAERKLDPEKALALLLE 199
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 200-437 9.50e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 71.17  E-value: 9.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 200 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsanadelSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 279
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 280 AMAYETLEQYRNAYVDYkTVLQIDCGIQLASdSANRIARILTELDGSKWRERLPPIPA-VPTSEPLRVWLPAAETpdqDP 358
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEnLPSVTFVGNYLQSFRP---KP 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 359 CPNNCMPSI-TDEKMFQALKEEGNQLVKDK---NYKDAISKYNECL---KINSKACAIYTNRALCYLKLGQFEEAKLDCE 431
Cdd:TIGR00990 276 RPAGLEDSNeLDEETGNGQLQLGLKSPESKadeSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355


                  ....*.
gi 1333886215 432 QALQID 437
Cdd:TIGR00990 356 KSIELD 361
PLN03088 super family cl33632
SGT1, suppressor of G2 allele of SKP1; Provisional
 386-562 3.84e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


The actual alignment was detected with superfamily member PLN03088:

Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.32  E-value: 3.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 386 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 465
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 466 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 545
Cdd:PLN03088   85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                         170       180
                  ....*....|....*....|.
gi 1333886215 546 TNAYEFGQ----VLSTISARK 562
Cdd:PLN03088  156 KYRHEFYQkpeeVVVTVFAKG 176
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 545-636 4.52e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 90.80  E-value: 4.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 545 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 623
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1333886215 624 FKTMLTLINKGQK 636
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
3-105 6.96e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 6.96e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   3 YTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:COG4785    96 FDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175

                          90       100
                  ....*....|....*....|....
gi 1333886215  82 LAKKTLSEVERDLKNSEPVSELQT 105
Cdd:COG4785   176 ERALWLYLAERKLDPEKALALLLE 199
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 200-437 9.50e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 71.17  E-value: 9.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 200 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsanadelSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 279
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 280 AMAYETLEQYRNAYVDYkTVLQIDCGIQLASdSANRIARILTELDGSKWRERLPPIPA-VPTSEPLRVWLPAAETpdqDP 358
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEnLPSVTFVGNYLQSFRP---KP 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 359 CPNNCMPSI-TDEKMFQALKEEGNQLVKDK---NYKDAISKYNECL---KINSKACAIYTNRALCYLKLGQFEEAKLDCE 431
Cdd:TIGR00990 276 RPAGLEDSNeLDEETGNGQLQLGLKSPESKadeSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355


                  ....*.
gi 1333886215 432 QALQID 437
Cdd:TIGR00990 356 KSIELD 361
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
242-459 5.98e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.18  E-value: 5.98e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 242 YSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilt 321
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD------------------ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 322 eldgskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLK 401
Cdd:COG0457    73 --------------------------------------PDD----------AEALNNLGLALQALGRYEEALEDYDKALE 104

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215 402 INSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 459
Cdd:COG0457   105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 198-358 9.61e-12

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 67.12  E-value: 9.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 198 SGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 277
Cdd:PLN03088    3 KDLEDKAKEAFVDDDFALAVDLYTQAID-LDPN---NAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 278 RRAMAYETLEQYRNAyvdyKTVLQIdcGIQLASDSAnRIARILTELDGSKWRERLPPIPAVPTSEPLRVWLPAAETPDQD 357
Cdd:PLN03088   75 RKGTACMKLEEYQTA----KAALEK--GASLAPGDS-RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                  .
gi 1333886215 358 P 358
Cdd:PLN03088  148 P 148
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 3-106 4.68e-07

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 52.48  E-value: 4.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   3 YTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:PLN03088   25 YTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104

                          90       100
                  ....*....|....*....|....*
gi 1333886215  82 LAKKTLSEVerDLKNSEPVSELQTK 106
Cdd:PLN03088  105 RFTKLIKEC--DEKIAEEEKDLVQP 127
TPR_1 pfam00515
Tetratricopeptide repeat;
13-46 2.36e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 2.36e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1333886215  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 46
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
409-440 2.43e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 2.43e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1333886215 409 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 409-440 7.30e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 7.30e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1333886215  409 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 13-46 7.97e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 7.97e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1333886215   13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 46
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 386-562 3.84e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.32  E-value: 3.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 386 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 465
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 466 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 545
Cdd:PLN03088   85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                         170       180
                  ....*....|....*....|.
gi 1333886215 546 TNAYEFGQ----VLSTISARK 562
Cdd:PLN03088  156 KYRHEFYQkpeeVVVTVFAKG 176
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
400-476 2.55e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 2.55e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215 400 LKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVDPSQVL-LSPDSSEA 476
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALeLDPDDAEA 78
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-327 2.75e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   9 ALPTAIAYNNRAQAEIKLQ--RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKT 86
Cdd:COG2956     2 LLPVAAALGWYFKGLNYLLngQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  87 LSEVERDLKNSEPVSELqtkgkrmvIEEVensgdeggkgsADEREDGGSDEAAMGNI---QKKLmvrrseggrrsrrgrt 163
Cdd:COG2956    82 LAQDYLKAGLLDRAEEL--------LEKL-----------LELDPDDAEALRLLAEIyeqEGDW---------------- 126

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 164 pgPRAEQQggLRETATASTGDSHYpeepraadnpsgLKRRGNELFRGGQFAEAAAQYSVAIAqleptgsANADELSILYs 243
Cdd:COG2956   127 --EKAIEV--LERLLKLGPENAHA------------YCELAELYLEQGDYDEAIEALEKALK-------LDPDCARALL- 182

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 244 NRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCGiqlaSDSANRIARILTEL 323
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS----DDLLLALADLLERK 258


                  ....
gi 1333886215 324 DGSK 327
Cdd:COG2956   259 EGLE 262
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 20-84 3.09e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.39  E-value: 3.09e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886215  20 AQAEIKLQR--WSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAK 84
Cdd:cd24142     5 EKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-96 1.15e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 1.15e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215  19 RAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKN 96
Cdd:TIGR02917 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 545-636 4.52e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 90.80  E-value: 4.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 545 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 623
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1333886215 624 FKTMLTLINKGQK 636
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
3-105 6.96e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 6.96e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   3 YTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:COG4785    96 FDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175

                          90       100
                  ....*....|....*....|....
gi 1333886215  82 LAKKTLSEVERDLKNSEPVSELQT 105
Cdd:COG4785   176 ERALWLYLAERKLDPEKALALLLE 199
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 200-437 9.50e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 71.17  E-value: 9.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 200 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsanadelSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 279
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 280 AMAYETLEQYRNAYVDYkTVLQIDCGIQLASdSANRIARILTELDGSKWRERLPPIPA-VPTSEPLRVWLPAAETpdqDP 358
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEnLPSVTFVGNYLQSFRP---KP 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 359 CPNNCMPSI-TDEKMFQALKEEGNQLVKDK---NYKDAISKYNECL---KINSKACAIYTNRALCYLKLGQFEEAKLDCE 431
Cdd:TIGR00990 276 RPAGLEDSNeLDEETGNGQLQLGLKSPESKadeSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355


                  ....*.
gi 1333886215 432 QALQID 437
Cdd:TIGR00990 356 KSIELD 361
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-98 1.47e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 1.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG0457    30 DYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD 109

                          90
                  ....*....|....*...
gi 1333886215  81 DLAKKTLSEVERDLKNSE 98
Cdd:COG0457   110 AEALYNLGLALLELGRYD 127
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-98 2.41e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 2.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG0457    64 DYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD 143

                          90
                  ....*....|....*...
gi 1333886215  81 DLAKKTLSEVERDLKNSE 98
Cdd:COG0457   144 ADALYNLGIALEKLGRYE 161
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
242-459 5.98e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.18  E-value: 5.98e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 242 YSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilt 321
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD------------------ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 322 eldgskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLK 401
Cdd:COG0457    73 --------------------------------------PDD----------AEALNNLGLALQALGRYEEALEDYDKALE 104

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215 402 INSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 459
Cdd:COG0457   105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-98 7.41e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 7.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87


                  ....*.
gi 1333886215  93 DLKNSE 98
Cdd:COG0457    88 ALGRYE 93
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 198-358 9.61e-12

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 67.12  E-value: 9.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 198 SGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 277
Cdd:PLN03088    3 KDLEDKAKEAFVDDDFALAVDLYTQAID-LDPN---NAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 278 RRAMAYETLEQYRNAyvdyKTVLQIdcGIQLASDSAnRIARILTELDGSKWRERLPPIPAVPTSEPLRVWLPAAETPDQD 357
Cdd:PLN03088   75 RKGTACMKLEEYQTA----KAALEK--GASLAPGDS-RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                  .
gi 1333886215 358 P 358
Cdd:PLN03088  148 P 148
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
187-337 2.23e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.17  E-value: 2.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 187 YPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRAL 266
Cdd:COG4785    63 IDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE-LDP-------DLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333886215 267 ELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCgiqlaSDSANRIARILTE--LDGSKWRERLPPIPA 337
Cdd:COG4785   135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP-----NDPERALWLYLAErkLDPEKALALLLEDWA 202
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2-83 3.22e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.40  E-value: 3.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   2 YYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:COG4785    62 RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYA 141


                  ..
gi 1333886215  82 LA 83
Cdd:COG4785   142 YA 143
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-80 5.17e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.78  E-value: 5.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG3914   100 LYRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-83 1.85e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.86  E-value: 1.85e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   2 YYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG3914   134 ALRRALALNPdFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDN 213


                  ...
gi 1333886215  81 DLA 83
Cdd:COG3914   214 ADA 216
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
195-455 7.95e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.02  E-value: 7.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 195 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVK 274
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-LDP-------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 275 PLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldgskwrerlppipavptseplrvwlpaaetp 354
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELD--------------------------------------------------- 106

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 355 dqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQAL 434
Cdd:COG0457   107 -----PDD----------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171

                         250       260
                  ....*....|....*....|.
gi 1333886215 435 QIDGENVKASHRLALAQKGLE 455
Cdd:COG0457   172 AAALAALLAAALGEAALALAA 192
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
369-480 1.69e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.86  E-value: 1.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 369 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 448
Cdd:COG0457    38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1333886215 449 LAQKGLENCRESGVDPSQVL-LSPDSSEAARHL 480
Cdd:COG0457   118 LALLELGRYDEAIEAYERALeLDPDDADALYNL 150
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 2-453 2.98e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.00  E-value: 2.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   2 YYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:TIGR00990 149 LYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  82 laKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKGSADEREDGGSD------EAAMGNIQKKLMVRRS 152
Cdd:TIGR00990 229 --EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSFRPKPRPAGLEDsneldeETGNGQLQLGLKSPES 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 153 EGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsgLKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgs 232
Cdd:TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIA------------------LNLRGTFKCLKGKHLEALADLSKSI-ELDP--- 362

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 233 anadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCG-----IQ 307
Cdd:TIGR00990 363 ----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQ 438

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 308 LASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaaetpdqdpcpnncmpsitdekmFQAlkeegnQLVK 385
Cdd:TIGR00990 439 LGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN--------------------------------YYG------ELLL 478

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215 386 DKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FEEAKLDCEQALQIDGENVKASHRLA--LAQKG 453
Cdd:TIGR00990 479 DQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFIEAENLCEKALIIDPECDIAVATMAqlLLQQG 556
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 326-463 3.51e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.00  E-value: 3.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 326 SKWRERLPPIPAVPTSEPlrvwlpAAETPDQDPCPNNCMPSITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSK 405
Cdd:TIGR00990  86 GKTEEKKSTAPKNAPVEP------ADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215 406 AcAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVD 463
Cdd:TIGR00990 160 P-VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 13-80 6.03e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 6.03e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN 84
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 13-96 8.71e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 8.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83


                  ....
gi 1333886215  93 DLKN 96
Cdd:COG4783    84 KAGD 87
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
369-480 1.08e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 1.08e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 369 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 448
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1333886215 449 LAQKGLENCRESGVDPSQVL-LSPDSSEAARHL 480
Cdd:COG0457    84 LALQALGRYEEALEDYDKALeLDPDDAEALYNL 116
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
2-79 2.02e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.09  E-value: 2.02e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1333886215   2 YYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEdCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPD 79
Cdd:COG3063    14 YYEKALELDPdNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2-81 2.14e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 2.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   2 YYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG4235    39 AYEKALRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118


                  .
gi 1333886215  81 D 81
Cdd:COG4235   119 A 119
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 13-98 2.69e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.27  E-value: 2.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:COG4783    38 PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117


                  ....*.
gi 1333886215  93 DLKNSE 98
Cdd:COG4783   118 ALGRPD 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-83 2.80e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.01  E-value: 2.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG0457    98 DYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177


                  ...
gi 1333886215  81 DLA 83
Cdd:COG0457   178 LLA 180
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 13-96 3.12e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.93  E-value: 3.12e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157


                  ....
gi 1333886215  93 DLKN 96
Cdd:COG3914   158 RLGR 161
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 13-98 3.70e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 3.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:COG2956   144 AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE 223


                  ....*.
gi 1333886215  93 DLKNSE 98
Cdd:COG2956   224 KLGDPE 229
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
374-452 7.51e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.77  E-value: 7.51e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1333886215 374 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQK 452
Cdd:COG4785   108 EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 374-480 7.84e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.38  E-value: 7.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 374 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA--- 450
Cdd:COG3914    79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAlrr 158

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1333886215 451 ----QKGLENCRESgvdpsqVLLSPDSSEAARHL 480
Cdd:COG3914   159 lgrlEEAIAALRRA------LELDPDNAEALNNL 186
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 2-82 1.03e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   2 YYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG2956   166 ALEKALKLDPDCArALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245


                  ..
gi 1333886215  81 DL 82
Cdd:COG2956   246 DL 247
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
365-450 1.26e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.00  E-value: 1.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 365 PSITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKAS 444
Cdd:COG4785    65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144


                  ....*.
gi 1333886215 445 HRLALA 450
Cdd:COG4785   145 LNRGIA 150
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2-80 1.52e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.96  E-value: 1.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG4783    60 LLHEALELDPDePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 383-459 1.79e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 1.79e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886215 383 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 459
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 167-452 2.00e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.23  E-value: 2.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 167 RAEQQGGLRETATASTGDSHYPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIA-QLEPTGSANADELSILYSNR 245
Cdd:COG3914     5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAaGEAAAAAAALLLLAALLELA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 246 AACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldg 325
Cdd:COG3914    85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---------------------- 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 326 skwrerlppipavptseplrvwlpaaetPDqdpcpnncmpsitdekMFQALKEEGNQLVKDKNYKDAISKYNECLKINSK 405
Cdd:COG3914   143 ----------------------------PD----------------FAEAYLNLGEALRRLGRLEEAIAALRRALELDPD 178

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1333886215 406 ACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKA-SHRLALAQK 452
Cdd:COG3914   179 NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAhSNLLFALRQ 226
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2-78 2.11e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 2.11e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEP 78
Cdd:COG5010    76 LLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 198-456 3.56e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 3.56e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 198 SGLKRRGNELFRGGQFAEAAAQYsVAIAQLEPtgsANADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 277
Cdd:COG2956     9 LGWYFKGLNYLLNGQPDKAIDLL-EEALELDP---ETVE----AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 278 RRAMAYETLEQYRNAYVDYKTVLQIDcgiQLASDSANRIARILTELdgSKWRErlppipAVPTSEPLrvwlpAAETPDQD 357
Cdd:COG2956    81 ELAQDYLKAGLLDRAEELLEKLLELD---PDDAEALRLLAEIYEQE--GDWEK------AIEVLERL-----LKLGPENA 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 358 pcpnncmpsitdekmfQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 437
Cdd:COG2956   145 ----------------HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208

                         250
                  ....*....|....*....
gi 1333886215 438 GENVKASHRLALAQKGLEN 456
Cdd:COG2956   209 PDYLPALPRLAELYEKLGD 227
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 3-106 4.68e-07

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 52.48  E-value: 4.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   3 YTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:PLN03088   25 YTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104

                          90       100
                  ....*....|....*....|....*
gi 1333886215  82 LAKKTLSEVerDLKNSEPVSELQTK 106
Cdd:PLN03088  105 RFTKLIKEC--DEKIAEEEKDLVQP 127
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 369-454 9.82e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.92  E-value: 9.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 369 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 448
Cdd:COG3914   108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187


                  ....*.
gi 1333886215 449 LAQKGL 454
Cdd:COG3914   188 NALQDL 193
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
22-98 2.06e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 2.06e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886215  22 AEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVdDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 98
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYD 76
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 195-303 2.08e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.31  E-value: 2.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 195 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVK 274
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEKAL-RLDPD---NAD----ALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86

                          90       100
                  ....*....|....*....|....*....
gi 1333886215 275 PLLRRAMAYETLEQYRNAYVDYKTVLQID 303
Cdd:COG4235    87 ALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 9-98 2.30e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.03  E-value: 2.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   9 ALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLS 88
Cdd:COG5010    50 LAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLA 129

                          90
                  ....*....|
gi 1333886215  89 EVERDLKNSE 98
Cdd:COG5010   130 ALLLSLGQDD 139
TPR_1 pfam00515
Tetratricopeptide repeat;
13-46 2.36e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 2.36e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1333886215  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 46
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
409-440 2.43e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 2.43e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1333886215 409 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 15-98 3.26e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 3.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  15 AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDL 94
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ 191


                  ....
gi 1333886215  95 KNSE 98
Cdd:COG2956   192 GDYE 195
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 374-459 4.32e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 4.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 374 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKG 453
Cdd:COG4783    39 EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118


                  ....*.
gi 1333886215 454 LENCRE 459
Cdd:COG4783   119 LGRPDE 124
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
383-450 6.77e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.78  E-value: 6.77e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215 383 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAkLDCEQALQIDGENVKASHRLALA 450
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAEL 68
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 409-440 7.30e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 7.30e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1333886215  409 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 13-46 7.97e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 7.97e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1333886215   13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 46
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 374-450 1.52e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.52e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886215 374 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 450
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 15-98 1.59e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 1.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  15 AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDL 94
Cdd:COG2956    78 ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ 157


                  ....
gi 1333886215  95 KNSE 98
Cdd:COG2956   158 GDYD 161
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 32-103 2.91e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 2.91e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1333886215  32 ALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSEL 103
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 386-562 3.84e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.32  E-value: 3.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 386 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 465
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 466 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 545
Cdd:PLN03088   85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                         170       180
                  ....*....|....*....|.
gi 1333886215 546 TNAYEFGQ----VLSTISARK 562
Cdd:PLN03088  156 KYRHEFYQkpeeVVVTVFAKG 176
TPR_12 pfam13424
Tetratricopeptide repeat;
12-76 9.48e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.22  E-value: 9.48e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333886215  12 TAIAYNNRAQAEIKLQRWSSALEDCEKALEL--------DPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQV 76
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 195-303 1.34e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 1.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 195 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsaNADELSILYsNRAACYLKEGNCRDCIQDCNRALELHPFSVK 274
Cdd:COG4783    36 DNPEAFALLGEILLQLGDLDEAIVLLHEALEL-------DPDEPEARL-NLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                          90       100
                  ....*....|....*....|....*....
gi 1333886215 275 PLLRRAMAYETLEQYRNAYVDYKTVLQID 303
Cdd:COG4783   108 AYLRLARAYRALGRPDEAIAALEKALELD 136
TPR_1 pfam00515
Tetratricopeptide repeat;
47-80 1.34e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.33  E-value: 1.34e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1333886215  47 VKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
369-437 1.60e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 1.60e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1333886215 369 DEKMFQALKEEGNQLVKDKNYKDAIsKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 437
Cdd:COG3063    22 DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
TPR_17 pfam13431
Tetratricopeptide repeat;
36-67 1.64e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 39.06  E-value: 1.64e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1333886215  36 CEKALELDPGNVKALLRRATTYKHQNKLQEAV 67
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 380-450 1.64e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.92  E-value: 1.64e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1333886215 380 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 450
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 192-455 1.74e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 192 RAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsaNADELSILYsNRAACYLKEGNCRDCIQDCNRALELHPF 271
Cdd:COG2956    71 RDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL-------DPDDAEALR-LLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 272 SVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldgskwrerlppipavptseplrvwlpaa 351
Cdd:COG2956   143 NAHAYCELAELYLEQGDYDEAIEALEKALKLD------------------------------------------------ 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 352 etpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCE 431
Cdd:COG2956   175 --------PDC----------ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR 236

                         250       260
                  ....*....|....*....|....*.
gi 1333886215 432 QALQIDGEN--VKASHRLALAQKGLE 455
Cdd:COG2956   237 KALELDPSDdlLLALADLLERKEGLE 262
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 193-346 2.54e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.21  E-value: 2.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 193 AADNPSGLKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHP-- 270
Cdd:COG3914   142 NPDFAEAYLNLGEALRRLGRLEEAIAALRRAL-ELDP-------DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPdn 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 271 FSVKPLLRRAM-------AYETLEQYRNAYVDYKTVLQIDCGIQLASDSAN---RIARILTELDGSKWRERLPPIPAVP- 339
Cdd:COG3914   214 ADAHSNLLFALrqacdweVYDRFEELLAALARGPSELSPFALLYLPDDDPAellALARAWAQLVAAAAAPELPPPPNPRd 293


                  ....*..
gi 1333886215 340 TSEPLRV 346
Cdd:COG3914   294 PDRKLRI 300
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
400-476 2.55e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 2.55e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215 400 LKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVDPSQVL-LSPDSSEA 476
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALeLDPDDAEA 78
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-327 2.75e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215   9 ALPTAIAYNNRAQAEIKLQ--RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKT 86
Cdd:COG2956     2 LLPVAAALGWYFKGLNYLLngQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  87 LSEVERDLKNSEPVSELqtkgkrmvIEEVensgdeggkgsADEREDGGSDEAAMGNI---QKKLmvrrseggrrsrrgrt 163
Cdd:COG2956    82 LAQDYLKAGLLDRAEEL--------LEKL-----------LELDPDDAEALRLLAEIyeqEGDW---------------- 126

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 164 pgPRAEQQggLRETATASTGDSHYpeepraadnpsgLKRRGNELFRGGQFAEAAAQYSVAIAqleptgsANADELSILYs 243
Cdd:COG2956   127 --EKAIEV--LERLLKLGPENAHA------------YCELAELYLEQGDYDEAIEALEKALK-------LDPDCARALL- 182

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 244 NRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCGiqlaSDSANRIARILTEL 323
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS----DDLLLALADLLERK 258


                  ....
gi 1333886215 324 DGSK 327
Cdd:COG2956   259 EGLE 262
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 20-84 3.09e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.39  E-value: 3.09e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886215  20 AQAEIKLQR--WSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAK 84
Cdd:cd24142     5 EKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 206-319 3.27e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 3.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 206 ELFRGGQFAEAAAQYSvAIAQLEPTGSANADelsILYsNRAACYLKEGNCRDCIQDCNRALELHPFSVK---PLLRRAMA 282
Cdd:COG1729     2 ALLKAGDYDEAIAAFK-AFLKRYPNSPLAPD---ALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLS 76

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1333886215 283 YETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARI 319
Cdd:COG1729    77 YLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
40-332 3.56e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 42.69  E-value: 3.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  40 LELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNsepvselqtkgkrmvieevensg 119
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR----------------------- 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 120 deggkgsaderedggsDEAAMGNIQKKLMVrrseggrrsrrgrtpgpraeqqgglretatastgdshypeeprAADNPSG 199
Cdd:COG0457    58 ----------------YEEALADYEQALEL-------------------------------------------DPDDAEA 78

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 200 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 279
Cdd:COG0457    79 LNNLGLALQALGRYEEALEDYDKAL-ELDP-------DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1333886215 280 AMAYETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARILTELDGSKWRERL 332
Cdd:COG0457   151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 242-270 3.56e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 3.56e-04
                           10        20
                   ....*....|....*....|....*....
gi 1333886215  242 YSNRAACYLKEGNCRDCIQDCNRALELHP 270
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 13-45 3.80e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 38.27  E-value: 3.80e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1333886215  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPG 45
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 47-80 5.38e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 5.38e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1333886215   47 VKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
207-303 6.65e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 6.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 207 LFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQdCNRALELHPFSVKPLLRRAMAYETL 286
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALE-LDP-------DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72

                          90
                  ....*....|....*..
gi 1333886215 287 EQYRNAYVDYKTVLQID 303
Cdd:COG3063    73 GDYDEALAYLERALELD 89
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 15-92 8.70e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 8.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  15 AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK---ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVE 91
Cdd:COG1729    32 ALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLA 111


                  .
gi 1333886215  92 R 92
Cdd:COG1729   112 R 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 207-303 9.50e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 9.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 207 LFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETL 286
Cdd:COG5010    64 YNKLGDFEESLALLEQAL-QLDP-------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135

                          90
                  ....*....|....*..
gi 1333886215 287 EQYRNAYVDYKTVLQID 303
Cdd:COG5010   136 GQDDEAKAALQRALGTS 152
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-96 1.15e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 1.15e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215  19 RAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKN 96
Cdd:TIGR02917 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 409-437 1.73e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.35  E-value: 1.73e-03
                          10        20
                  ....*....|....*....|....*....
gi 1333886215 409 IYTNRALCYLKLGQFEEAKLDCEQALQID 437
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELD 31
TPR_8 pfam13181
Tetratricopeptide repeat;
409-437 1.78e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.22  E-value: 1.78e-03
                          10        20
                  ....*....|....*....|....*....
gi 1333886215 409 IYTNRALCYLKLGQFEEAKLDCEQALQID 437
Cdd:pfam13181   3 AYYNLGLIYLKLGDYEEAKEYYEKALELD 31
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 28-80 2.81e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 2.81e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1333886215  28 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 369-437 3.24e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 3.24e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1333886215 369 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 437
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 245-440 4.22e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 4.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 245 RAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteld 324
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD--------------------- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 325 gskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINS 404
Cdd:COG4783    69 -----------------------------------PDE----------PEARLNLGLALLKAGDYDEALALLEKALKLDP 103

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1333886215 405 KACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:COG4783   104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_19 pfam14559
Tetratricopeptide repeat;
28-85 4.60e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 4.60e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886215  28 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKK 85
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
TPR_1 pfam00515
Tetratricopeptide repeat;
242-270 5.17e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 5.17e-03
                          10        20
                  ....*....|....*....|....*....
gi 1333886215 242 YSNRAACYLKEGNCRDCIQDCNRALELHP 270
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 187-303 7.23e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.63  E-value: 7.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 187 YPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQLEPTGSANADELSILYSNRAACYLKEGNCRDCIQDCNRAL 266
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1333886215 267 ELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 303
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 404-450 7.67e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 38.47  E-value: 7.67e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1333886215 404 SKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 450
Cdd:TIGR02521  28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALY 74
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 387-440 8.09e-03

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 37.27  E-value: 8.09e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1333886215 387 KNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:TIGR02552  65 KEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 13-106 8.76e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 8.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544

                          90
                  ....*....|....
gi 1333886215  93 DLKNSEPVSELQTK 106
Cdd:TIGR02917 545 RTGNEEEAVAWLEK 558
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 202-324 9.30e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.09  E-value: 9.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886215 202 RRGNELFRGGQFAEAAAQYSVAIaQLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAM 281
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKAL-ELDPD---NPE----AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1333886215 282 AYETLEQYRNAYVDYKTVLQIDcgiQLASDSANRIARILTELD 324
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALG 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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