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Conserved domains on  [gi|1333886296|ref|NP_001346909|]
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sperm-associated antigen 1 isoform 3 [Mus musculus]

Protein Classification

3a0801s09 and RPAP3_C domain-containing protein( domain architecture ID 13518458)

protein containing domains 3a0801s09, PLN03088, and RPAP3_C

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 778-869 5.10e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


:

Pssm-ID: 464012  Cd Length: 91  Bit Score: 91.19  E-value: 5.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 778 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 856
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1333886296 857 FKTMLTLINKGQK 869
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-331 2.42e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.42e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 218 GKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKL 296
Cdd:COG0457    47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1333886296 297 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 202-686 1.42e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.27  E-value: 1.42e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 202 AGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK 281
Cdd:TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 282 ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDlaKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKG 358
Cdd:TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 359 SADEREDGGSD------EAAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsg 432
Cdd:TIGR00990 272 RPKPRPAGLEDsneldeETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA------------------ 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 433 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 512
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSI-ELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 513 AMAYETLEQYRNAYVDYKTVLQIDCG-----IQLASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaae 585
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQLGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN------------ 471

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 586 tpdqdpcpnncmpsitdekmFQAlkeegnQLVKDKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FE 657
Cdd:TIGR00990 472 --------------------YYG------ELLLDQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFI 525

                         490       500       510
                  ....*....|....*....|....*....|.
gi 1333886296 658 EAKLDCEQALQIDGENVKASHRLA--LAQKG 686
Cdd:TIGR00990 526 EAENLCEKALIIDPECDIAVATMAqlLLQQG 556
PLN03088 super family cl33632
SGT1, suppressor of G2 allele of SKP1; Provisional
 619-795 8.24e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


The actual alignment was detected with superfamily member PLN03088:

Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.93  E-value: 8.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 619 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 698
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 699 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 778
Cdd:PLN03088   85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                         170       180
                  ....*....|....*....|.
gi 1333886296 779 TNAYEFGQ----VLSTISARK 795
Cdd:PLN03088  156 KYRHEFYQkpeeVVVTVFAKG 176
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 778-869 5.10e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 91.19  E-value: 5.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 778 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 856
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1333886296 857 FKTMLTLINKGQK 869
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-331 2.42e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.42e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 218 GKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKL 296
Cdd:COG0457    47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1333886296 297 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 202-686 1.42e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.27  E-value: 1.42e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 202 AGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK 281
Cdd:TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 282 ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDlaKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKG 358
Cdd:TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 359 SADEREDGGSD------EAAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsg 432
Cdd:TIGR00990 272 RPKPRPAGLEDsneldeETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA------------------ 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 433 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 512
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSI-ELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 513 AMAYETLEQYRNAYVDYKTVLQIDCG-----IQLASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaae 585
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQLGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN------------ 471

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 586 tpdqdpcpnncmpsitdekmFQAlkeegnQLVKDKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FE 657
Cdd:TIGR00990 472 --------------------YYG------ELLLDQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFI 525

                         490       500       510
                  ....*....|....*....|....*....|.
gi 1333886296 658 EAKLDCEQALQIDGENVKASHRLA--LAQKG 686
Cdd:TIGR00990 526 EAENLCEKALIIDPECDIAVATMAqlLLQQG 556
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
475-692 1.61e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.19  E-value: 1.61e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 475 YSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilt 554
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD------------------ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 555 eldgskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLK 634
Cdd:COG0457    73 --------------------------------------PDD----------AEALNNLGLALQALGRYEEALEDYDKALE 104

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886296 635 INSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 692
Cdd:COG0457   105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 431-591 2.59e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 66.35  E-value: 2.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 431 SGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 510
Cdd:PLN03088    3 KDLEDKAKEAFVDDDFALAVDLYTQAID-LDPN---NAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 511 RRAMAYETLEQYRNAyvdyKTVLQIdcGIQLASDSAnRIARILTELDGSKWRERLPPIPAVPTSEPLRVWLPAAETPDQD 590
Cdd:PLN03088   75 RKGTACMKLEEYQTA----KAALEK--GASLAPGDS-RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                  .
gi 1333886296 591 P 591
Cdd:PLN03088  148 P 148
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 219-339 5.03e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 65.19  E-value: 5.03e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 219 KGNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:PLN03088    8 KAKEAFVDDDFALAVDLYTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1333886296 298 EAVDDLRKVLQVEPDNDLAKKTLSEVerDLKNSEPVSELQTK 339
Cdd:PLN03088   88 TAKAALEKGASLAPGDSRFTKLIKEC--DEKIAEEEKDLVQP 127
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-331 1.50e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.01  E-value: 1.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 220 GNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEA 299
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1333886296 300 VDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:TIGR02917 790 IKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR 821
TPR_1 pfam00515
Tetratricopeptide repeat;
246-279 2.56e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.56e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1333886296 246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 279
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
642-673 2.66e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.66e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1333886296 642 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 642-673 8.23e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 8.23e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1333886296  642 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 246-279 8.90e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 8.90e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1333886296  246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 279
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 619-795 8.24e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.93  E-value: 8.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 619 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 698
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 699 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 778
Cdd:PLN03088   85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                         170       180
                  ....*....|....*....|.
gi 1333886296 779 TNAYEFGQ----VLSTISARK 795
Cdd:PLN03088  156 KYRHEFYQkpeeVVVTVFAKG 176
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 253-317 2.80e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 2.80e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886296 253 AQAEIKLQR--WSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAK 317
Cdd:cd24142     5 EKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 778-869 5.10e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 91.19  E-value: 5.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 778 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 856
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1333886296 857 FKTMLTLINKGQK 869
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-331 2.42e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.42e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 218 GKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKL 296
Cdd:COG0457    47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1333886296 297 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
227-331 3.25e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.98  E-value: 3.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 227 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG0457    22 GRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101

                          90       100
                  ....*....|....*....|....*.
gi 1333886296 306 VLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG0457   102 ALELDPDDAEALYNLGLALLELGRYD 127
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
195-338 5.37e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 81.11  E-value: 5.37e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 195 IETKIETAGLTEKEKSFLANRekgkGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKAL 273
Cdd:COG4785    59 AAERIDRALALPDLAQLYYER----GVAYDSLGDYDLAIADFDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRAL 134

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1333886296 274 ELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSELQT 338
Cdd:COG4785   135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLE 199
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 202-686 1.42e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.27  E-value: 1.42e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 202 AGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK 281
Cdd:TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 282 ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDlaKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKG 358
Cdd:TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 359 SADEREDGGSD------EAAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsg 432
Cdd:TIGR00990 272 RPKPRPAGLEDsneldeETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA------------------ 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 433 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 512
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSI-ELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 513 AMAYETLEQYRNAYVDYKTVLQIDCG-----IQLASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaae 585
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQLGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN------------ 471

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 586 tpdqdpcpnncmpsitdekmFQAlkeegnQLVKDKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FE 657
Cdd:TIGR00990 472 --------------------YYG------ELLLDQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFI 525

                         490       500       510
                  ....*....|....*....|....*....|.
gi 1333886296 658 EAKLDCEQALQIDGENVKASHRLA--LAQKG 686
Cdd:TIGR00990 526 EAENLCEKALIIDPECDIAVATMAqlLLQQG 556
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 220-316 3.65e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.65  E-value: 3.65e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 220 GNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 298
Cdd:COG3914   119 GNLLLALGRLEEALAALRRALALNPdFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                          90
                  ....*....|....*...
gi 1333886296 299 AVDDLRKVLQVEPDNDLA 316
Cdd:COG3914   199 AIAAYRRALELDPDNADA 216
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 211-313 4.45e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.65  E-value: 4.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 211 FLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATT 289
Cdd:COG3914    76 LLAALLELAALLLQALGRYEEALALYRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                          90       100
                  ....*....|....*....|....
gi 1333886296 290 YKHQNKLQEAVDDLRKVLQVEPDN 313
Cdd:COG3914   156 LRRLGRLEEAIAALRRALELDPDN 179
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
475-692 1.61e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.19  E-value: 1.61e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 475 YSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilt 554
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD------------------ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 555 eldgskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLK 634
Cdd:COG0457    73 --------------------------------------PDD----------AEALNNLGLALQALGRYEEALEDYDKALE 104

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886296 635 INSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 692
Cdd:COG0457   105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 220-314 2.70e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 67.72  E-value: 2.70e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 220 GNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 298
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                          90
                  ....*....|....*.
gi 1333886296 299 AVDDLRKVLQVEPDND 314
Cdd:COG4235   104 AIAAWQKLLALLPADA 119
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
218-316 3.77e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 69.56  E-value: 3.77e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 218 GKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:COG4785    45 ALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYD 124

                          90
                  ....*....|....*....
gi 1333886296 298 EAVDDLRKVLQVEPDNDLA 316
Cdd:COG4785   125 AALEDFDRALELDPDYAYA 143
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 213-331 4.53e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.14  E-value: 4.53e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 213 ANREKGKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYK 291
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1333886296 292 HQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
246-331 8.57e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 8.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 325
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87


                  ....*.
gi 1333886296 326 DLKNSE 331
Cdd:COG0457    88 ALGRYE 93
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 219-313 9.27e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.37  E-value: 9.27e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 219 KGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:COG4783    44 LGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123

                          90
                  ....*....|....*.
gi 1333886296 298 EAVDDLRKVLQVEPDN 313
Cdd:COG4783   124 EAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
227-316 1.08e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.88  E-value: 1.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 227 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG0457    90 GRYEEALEDYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                          90
                  ....*....|.
gi 1333886296 306 VLQVEPDNDLA 316
Cdd:COG0457   170 LEAAALAALLA 180
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
420-570 1.37e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.02  E-value: 1.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 420 YPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRAL 499
Cdd:COG4785    63 IDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE-LDP-------DLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333886296 500 ELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCgiqlaSDSANRIARILTE--LDGSKWRERLPPIPA 570
Cdd:COG4785   135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP-----NDPERALWLYLAErkLDPEKALALLLEDWA 202
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
227-312 1.57e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.04  E-value: 1.57e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 227 GDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEdCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG3063     6 GDLEEAEEYYEKALELDPdNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                  ....*..
gi 1333886296 306 VLQVEPD 312
Cdd:COG3063    85 ALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 223-311 2.21e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 65.75  E-value: 2.21e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 223 AFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVD 301
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                          90
                  ....*....|
gi 1333886296 302 DLRKVLQVEP 311
Cdd:COG5010   144 ALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 220-331 3.54e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.83  E-value: 3.54e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 220 GNEAFYSGDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 298
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDCArALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1333886296 299 AVDDLRKVLQVEPDNDlAKKTLSEVERDLKNSE 331
Cdd:COG2956   231 ALELLRKALELDPSDD-LLLALADLLERKEGLE 262
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
428-688 1.69e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 1.69e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 428 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVK 507
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-LDP-------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 508 PLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldgskwrerlppipavptseplrvwlpaaetp 587
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELD--------------------------------------------------- 106

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 588 dqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQAL 667
Cdd:COG0457   107 -----PDD----------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171

                         250       260
                  ....*....|....*....|.
gi 1333886296 668 QIDGENVKASHRLALAQKGLE 688
Cdd:COG0457   172 AAALAALLAAALGEAALALAA 192
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 431-591 2.59e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 66.35  E-value: 2.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 431 SGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 510
Cdd:PLN03088    3 KDLEDKAKEAFVDDDFALAVDLYTQAID-LDPN---NAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 511 RRAMAYETLEQYRNAyvdyKTVLQIdcGIQLASDSAnRIARILTELDGSKWRERLPPIPAVPTSEPLRVWLPAAETPDQD 590
Cdd:PLN03088   75 RKGTACMKLEEYQTA----KAALEK--GASLAPGDS-RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                  .
gi 1333886296 591 P 591
Cdd:PLN03088  148 P 148
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 226-331 2.60e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.14  E-value: 2.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 226 SGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLR 304
Cdd:COG2956   123 EGDWEKAIEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202

                          90       100
                  ....*....|....*....|....*..
gi 1333886296 305 KVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG2956   203 RALEQDPDYLPALPRLAELYEKLGDPE 229
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 219-339 5.03e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 65.19  E-value: 5.03e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 219 KGNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:PLN03088    8 KAKEAFVDDDFALAVDLYTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1333886296 298 EAVDDLRKVLQVEPDNDLAKKTLSEVerDLKNSEPVSELQTK 339
Cdd:PLN03088   88 TAKAALEKGASLAPGDSRFTKLIKEC--DEKIAEEEKDLVQP 127
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
602-713 2.05e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.95  E-value: 2.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 602 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 681
Cdd:COG0457    38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1333886296 682 LAQKGLENCRESGVDPSQVL-LSPDSSEAARHL 713
Cdd:COG0457   118 LALLELGRYDEAIEAYERALeLDPDDADALYNL 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 231-313 3.39e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.86  E-value: 3.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 231 EAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQV 309
Cdd:COG4235     1 EAIARLRQALAANPNdAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                  ....
gi 1333886296 310 EPDN 313
Cdd:COG4235    81 DPDN 84
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
602-713 1.42e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.64  E-value: 1.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 602 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 681
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1333886296 682 LAQKGLENCRESGVDPSQVL-LSPDSSEAARHL 713
Cdd:COG0457    84 LALQALGRYEEALEDYDKALeLDPDDAEALYNL 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 227-331 1.97e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.74  E-value: 1.97e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 227 GDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDDAeALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                          90       100
                  ....*....|....*....|....*.
gi 1333886296 306 VLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYE 195
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 227-331 5.50e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.20  E-value: 5.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 227 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG2956    56 GEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135

                          90       100
                  ....*....|....*....|....*.
gi 1333886296 306 VLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG2956   136 LLKLGPENAHAYCELAELYLEQGDYD 161
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 559-696 5.68e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 59.61  E-value: 5.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 559 SKWRERLPPIPAVPTSEPlrvwlpAAETPDQDPCPNNCMPSITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSK 638
Cdd:TIGR00990  86 GKTEEKKSTAPKNAPVEP------ADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886296 639 AcAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVD 696
Cdd:TIGR00990 160 P-VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 616-692 9.24e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.35  E-value: 9.24e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886296 616 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 692
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
607-685 1.56e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.08  E-value: 1.56e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1333886296 607 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQK 685
Cdd:COG4785   108 EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 246-329 1.56e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.47  E-value: 1.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 325
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157


                  ....
gi 1333886296 326 DLKN 329
Cdd:COG3914   158 RLGR 161
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 431-689 2.03e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 2.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 431 SGLKRRGNELFRGGQFAEAAAQYsVAIAQLEPtgsANADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 510
Cdd:COG2956     9 LGWYFKGLNYLLNGQPDKAIDLL-EEALELDP---ETVE----AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 511 RRAMAYETLEQYRNAYVDYKTVLQIDcgiQLASDSANRIARILTELdgSKWRErlppipAVPTSEPLrvwlpAAETPDQD 590
Cdd:COG2956    81 ELAQDYLKAGLLDRAEELLEKLLELD---PDDAEALRLLAEIYEQE--GDWEK------AIEVLERL-----LKLGPENA 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 591 pcpnncmpsitdekmfQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 670
Cdd:COG2956   145 ----------------HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208

                         250
                  ....*....|....*....
gi 1333886296 671 GENVKASHRLALAQKGLEN 689
Cdd:COG2956   209 PDYLPALPRLAELYEKLGD 227
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
598-683 2.65e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.31  E-value: 2.65e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 598 PSITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKAS 677
Cdd:COG4785    65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144


                  ....*.
gi 1333886296 678 HRLALA 683
Cdd:COG4785   145 LNRGIA 150
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 607-713 3.18e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 3.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 607 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA--- 683
Cdd:COG3914    79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAlrr 158

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1333886296 684 ----QKGLENCRESgvdpsqVLLSPDSSEAARHL 713
Cdd:COG3914   159 lgrlEEAIAALRRA------LELDPDNAEALNNL 186
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 222-325 4.28e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.30  E-value: 4.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 222 EAFYSGDYEEAVMYYTRSLSALP----TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK---ALLRRATTYKHQN 294
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPnsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1333886296 295 KLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 325
Cdd:COG1729    82 DYDKARATLEELIKKYPDSEAAKEARARLAR 112
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 400-685 4.60e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.93  E-value: 4.60e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 400 RAEQQGGLRETATASTGDSHYPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIA-QLEPTGSANADELSILYSNR 478
Cdd:COG3914     5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAaGEAAAAAAALLLLAALLELA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 479 AACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldg 558
Cdd:COG3914    85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---------------------- 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 559 skwrerlppipavptseplrvwlpaaetPDqdpcpnncmpsitdekMFQALKEEGNQLVKDKNYKDAISKYNECLKINSK 638
Cdd:COG3914   143 ----------------------------PD----------------FAEAYLNLGEALRRLGRLEEAIAALRRALELDPD 178

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1333886296 639 ACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKA-SHRLALAQK 685
Cdd:COG3914   179 NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAhSNLLFALRQ 226
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 228-331 7.24e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.66  E-value: 7.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 228 DYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVL 307
Cdd:COG5010    36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115

                          90       100
                  ....*....|....*....|....
gi 1333886296 308 QVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG5010   116 ALSPDNPNAYSNLAALLLSLGQDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 428-536 1.78e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.77  E-value: 1.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 428 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVK 507
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEKAL-RLDPD---NAD----ALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86

                          90       100
                  ....*....|....*....|....*....
gi 1333886296 508 PLLRRAMAYETLEQYRNAYVDYKTVLQID 536
Cdd:COG4235    87 ALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 211-560 2.02e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.58  E-value: 2.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 211 FLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATT 289
Cdd:COG2956     6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVeAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 290 YKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNsepvselqtkgkrmvieevensgdeggkgsaderedggSD 369
Cdd:COG2956    86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGD--------------------------------------WE 127

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 370 EAAmgNIQKKLmvrrseggrrsrrgrtpgpraeqqgglretATASTGDSHYpeepraadnpsgLKRRGNELFRGGQFAEA 449
Cdd:COG2956   128 KAI--EVLERL------------------------------LKLGPENAHA------------YCELAELYLEQGDYDEA 163

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 450 AAQYSVAIaQLEPtGSANAdelsilYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDY 529
Cdd:COG2956   164 IEALEKAL-KLDP-DCARA------LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELL 235

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1333886296 530 KTVLQIDCGiqlaSDSANRIARILTELDGSK 560
Cdd:COG2956   236 RKALELDPS----DDLLLALADLLERKEGLE 262
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
255-331 4.25e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.63  E-value: 4.25e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886296 255 AEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVdDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYD 76
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 602-687 5.55e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.46  E-value: 5.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 602 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 681
Cdd:COG3914   108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187


                  ....*.
gi 1333886296 682 LAQKGL 687
Cdd:COG3914   188 NALQDL 193
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 607-692 9.07e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 9.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 607 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKG 686
Cdd:COG4783    39 EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118


                  ....*.
gi 1333886296 687 LENCRE 692
Cdd:COG4783   119 LGRPDE 124
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
616-683 1.45e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 1.45e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886296 616 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAkLDCEQALQIDGENVKASHRLALA 683
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAEL 68
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-331 1.50e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.01  E-value: 1.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 220 GNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEA 299
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1333886296 300 VDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:TIGR02917 790 IKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR 821
TPR_1 pfam00515
Tetratricopeptide repeat;
246-279 2.56e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.56e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1333886296 246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 279
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
642-673 2.66e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.66e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1333886296 642 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 607-683 3.45e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 3.45e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886296 607 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 683
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 398-536 4.92e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.38  E-value: 4.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 398 GPRAEQQGGLRETATASTGDSHYPEEPRAADNPSGL----KRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSI 473
Cdd:COG3914    42 GLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLaallELAALLLQALGRYEEALALYRRALA-LNP-------DNAE 113

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333886296 474 LYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 536
Cdd:COG3914   114 ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 265-336 6.06e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 6.06e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1333886296 265 ALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSEL 336
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 642-673 8.23e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 8.23e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1333886296  642 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 246-279 8.90e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 8.90e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1333886296  246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 279
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 425-688 1.11e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 1.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 425 RAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsaNADELSILYsNRAACYLKEGNCRDCIQDCNRALELHPF 504
Cdd:COG2956    71 RDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL-------DPDDAEALR-LLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 505 SVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldgskwrerlppipavptseplrvwlpaa 584
Cdd:COG2956   143 NAHAYCELAELYLEQGDYDEAIEALEKALKLD------------------------------------------------ 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 585 etpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCE 664
Cdd:COG2956   175 --------PDC----------ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR 236

                         250       260
                  ....*....|....*....|....*.
gi 1333886296 665 QALQIDGEN--VKASHRLALAQKGLE 688
Cdd:COG2956   237 KALELDPSDdlLLALADLLERKEGLE 262
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 226-660 1.13e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 1.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 226 SGDYEEAVMYYTRSLSALPTAIA-YNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLR 304
Cdd:TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEpALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 305 KVLQVEPDNDLAKKTLSEVERDLKNSEpvselqtKGKRMVIEEVENSGDeggkgsaderedggSDEAAMGNIQKKLmvrr 384
Cdd:TIGR02917 626 KLLALQPDSALALLLLADAYAVMKNYA-------KAITSLKRALELKPD--------------NTEAQIGLAQLLL---- 680

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 385 seggrrsrrgrtpgpraeqqggLRETATASTGDSHYPEEPRAADnPSGLKRRGNELFRGGQFAEAAAQYSVAIaQLEPTg 464
Cdd:TIGR02917 681 ----------------------AAKRTESAKKIAKSLQKQHPKA-ALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPS- 735

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 465 SANADELsilysnrAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLqidcgiQLASD 544
Cdd:TIGR02917 736 SQNAIKL-------HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV------KKAPD 802

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 545 SA---NRIARILTELDGSKwrerlppipavptsePLRVWLPAAETPDQDPcpnncmpsitdekmfQALKEEGNQLVKDKN 621
Cdd:TIGR02917 803 NAvvlNNLAWLYLELKDPR---------------ALEYAERALKLAPNIP---------------AILDTLGWLLVEKGE 852

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 1333886296 622 YKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAK 660
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
273-565 1.25e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 273 LELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNsepvselqtkgkrmvieevensg 352
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR----------------------- 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 353 deggkgsaderedggsDEAAMGNIQKKLMVrrseggrrsrrgrtpgpraeqqgglretatastgdshypeeprAADNPSG 432
Cdd:COG0457    58 ----------------YEEALADYEQALEL-------------------------------------------DPDDAEA 78

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 433 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 512
Cdd:COG0457    79 LNNLGLALQALGRYEEALEDYDKAL-ELDP-------DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1333886296 513 AMAYETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARILTELDGSKWRERL 565
Cdd:COG0457   151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 428-536 1.98e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 428 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsaNADELSILYsNRAACYLKEGNCRDCIQDCNRALELHPFSVK 507
Cdd:COG4783    36 DNPEAFALLGEILLQLGDLDEAIVLLHEALEL-------DPDEPEARL-NLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                          90       100
                  ....*....|....*....|....*....
gi 1333886296 508 PLLRRAMAYETLEQYRNAYVDYKTVLQID 536
Cdd:COG4783   108 AYLRLARAYRALGRPDEAIAALEKALELD 136
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 227-310 2.54e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 2.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 227 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG3914   160 GRLEEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239


                  ....*
gi 1333886296 306 VLQVE 310
Cdd:COG3914   240 LAALA 244
TPR_12 pfam13424
Tetratricopeptide repeat;
245-309 2.86e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 2.86e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333886296 245 TAIAYNNRAQAEIKLQRWSSALEDCEKALEL--------DPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQV 309
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-313 3.58e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 3.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 220 GNEAFYSGDYEEAVMYYTRSLSALPTAiAYNNRAQAEIKLQ--RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPRS-LYAKLGLAQLALAenRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIE 210

                          90
                  ....*....|....*.
gi 1333886296 298 EAVDDLRKVLQVEPDN 313
Cdd:TIGR02917 211 LALAAYRKAIALRPNN 226
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 613-683 3.71e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 3.71e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1333886296 613 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 683
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
602-670 4.09e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 4.09e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1333886296 602 DEKMFQALKEEGNQLVKDKNYKDAIsKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 670
Cdd:COG3063    22 DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 440-536 4.81e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 4.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 440 LFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETL 519
Cdd:COG5010    64 YNKLGDFEESLALLEQAL-QLDP-------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135

                          90
                  ....*....|....*..
gi 1333886296 520 EQYRNAYVDYKTVLQID 536
Cdd:COG5010   136 GQDDEAKAALQRALGTS 152
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
633-709 6.31e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.38  E-value: 6.31e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886296 633 LKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVDPSQVL-LSPDSSEA 709
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALeLDPDDAEA 78
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 619-795 8.24e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.93  E-value: 8.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 619 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 698
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 699 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 778
Cdd:PLN03088   85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                         170       180
                  ....*....|....*....|.
gi 1333886296 779 TNAYEFGQ----VLSTISARK 795
Cdd:PLN03088  156 KYRHEFYQkpeeVVVTVFAKG 176
TPR_17 pfam13431
Tetratricopeptide repeat;
269-300 1.06e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 40.22  E-value: 1.06e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1333886296 269 CEKALELDPGNVKALLRRATTYKHQNKLQEAV 300
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
440-536 1.17e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 440 LFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQdCNRALELHPFSVKPLLRRAMAYETL 519
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALE-LDP-------DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72

                          90
                  ....*....|....*..
gi 1333886296 520 EQYRNAYVDYKTVLQID 536
Cdd:COG3063    73 GDYDEALAYLERALELD 89
TPR_1 pfam00515
Tetratricopeptide repeat;
280-313 1.52e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 1.52e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1333886296 280 VKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 313
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 439-552 1.59e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 1.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 439 ELFRGGQFAEAAAQYSvAIAQLEPTGSANADelsILYsNRAACYLKEGNCRDCIQDCNRALELHPFSVK---PLLRRAMA 515
Cdd:COG1729     2 ALLKAGDYDEAIAAFK-AFLKRYPNSPLAPD---ALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLS 76

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1333886296 516 YETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARI 552
Cdd:COG1729    77 YLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-329 2.58e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.69  E-value: 2.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 220 GNEAFYSGDYEEAVMYYTRSLSALPTA-IAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 298
Cdd:TIGR02917 234 ATILIEAGEFEEAEKHADALLKKAPNSpLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ 313

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1333886296 299 AVDDLRKVLQVEPDNDLAKKTLSEVERDLKN 329
Cdd:TIGR02917 314 AYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 219-336 2.65e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 44.13  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 219 KGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKA-LLRRATTYKHQNKL 296
Cdd:COG3071    22 EGLLALAEGRYARAEKLLSKAAEHSEApLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQA 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1333886296 297 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSEL 336
Cdd:COG3071   102 EQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLEL 141
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 478-673 2.74e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 2.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 478 RAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteld 557
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD--------------------- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 558 gskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINS 637
Cdd:COG4783    69 -----------------------------------PDE----------PEARLNLGLALLKAGDYDEALALLEKALKLDP 103

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1333886296 638 KACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:COG4783   104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 253-317 2.80e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 2.80e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886296 253 AQAEIKLQR--WSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAK 317
Cdd:cd24142     5 EKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 246-278 2.92e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 38.66  E-value: 2.92e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1333886296 246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPG 278
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 242-536 3.02e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 3.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 242 ALPTAIAYNNRAQAEIKLQ--RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKT 319
Cdd:COG2956     2 LLPVAAALGWYFKGLNYLLngQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 320 LSEVERDLKNSEpvselqtkgkrmvieevensgdeggkgsaderedggsdeaamgniqkklmvrrseggrrsrrgrtpgp 399
Cdd:COG2956    82 LAQDYLKAGLLD-------------------------------------------------------------------- 93

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 400 RAEQqggLRETATAStgdshypeeprAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsanADELSILYSNRA 479
Cdd:COG2956    94 RAEE---LLEKLLEL-----------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELA 151

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886296 480 ACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 536
Cdd:COG2956   152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 475-503 4.06e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 4.06e-04
                           10        20
                   ....*....|....*....|....*....
gi 1333886296  475 YSNRAACYLKEGNCRDCIQDCNRALELHP 503
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 602-670 4.14e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 4.14e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1333886296 602 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 670
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 219-279 4.18e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.63  E-value: 4.18e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1333886296 219 KGNEAFYSGDYEEAVMYYTRSLSALP----TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 279
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPespdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 280-313 6.63e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 6.63e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1333886296  280 VKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 313
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 420-536 9.99e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 9.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 420 YPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQLEPTGSANADELSILYSNRAACYLKEGNCRDCIQDCNRAL 499
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1333886296 500 ELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 536
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 435-557 1.17e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 435 RRGNELFRGGQFAEAAAQYSVAIaQLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAM 514
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKAL-ELDPD---NPE----AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1333886296 515 AYETLEQYRNAYVDYKTVLQIDcgiQLASDSANRIARILTELD 557
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALG 120
TPR_19 pfam14559
Tetratricopeptide repeat;
261-318 1.36e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.95  E-value: 1.36e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886296 261 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKK 318
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 642-670 1.38e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.12  E-value: 1.38e-03
                          10        20
                  ....*....|....*....|....*....
gi 1333886296 642 IYTNRALCYLKLGQFEEAKLDCEQALQID 670
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELD 31
TPR_8 pfam13181
Tetratricopeptide repeat;
642-670 2.07e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.61  E-value: 2.07e-03
                          10        20
                  ....*....|....*....|....*....
gi 1333886296 642 IYTNRALCYLKLGQFEEAKLDCEQALQID 670
Cdd:pfam13181   3 AYYNLGLIYLKLGDYEEAKEYYEKALELD 31
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 224-287 4.42e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 4.42e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1333886296 224 FYSGDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRA 287
Cdd:COG4235    62 LAAGDTEEAEELLERALALDPDNPeALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 637-683 4.47e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 39.63  E-value: 4.47e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1333886296 637 SKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 683
Cdd:TIGR02521  28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALY 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 227-316 5.36e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 5.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 227 GDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVdALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

                          90
                  ....*....|.
gi 1333886296 306 VLQVEPDNDLA 316
Cdd:TIGR02917 253 LLKKAPNSPLA 263
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 246-339 5.55e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 5.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 325
Cdd:TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544

                          90
                  ....*....|....
gi 1333886296 326 DLKNSEPVSELQTK 339
Cdd:TIGR02917 545 RTGNEEEAVAWLEK 558
TPR_1 pfam00515
Tetratricopeptide repeat;
475-503 5.71e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 5.71e-03
                          10        20
                  ....*....|....*....|....*....
gi 1333886296 475 YSNRAACYLKEGNCRDCIQDCNRALELHP 503
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 620-673 6.84e-03

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 37.66  E-value: 6.84e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1333886296 620 KNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:TIGR02552  65 KEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118
TPR_9 pfam13371
Tetratricopeptide repeat;
257-316 7.08e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 36.04  E-value: 7.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 257 IKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLA 316
Cdd:pfam13371   6 LREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
TPR_12 pfam13424
Tetratricopeptide repeat;
224-275 8.38e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.21  E-value: 8.38e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1333886296 224 FYSGDYEEAVMYYTRSLSA---------LPTAIAYNNRAQAEIKLQRWSSALEDCEKALEL 275
Cdd:pfam13424  14 RRLGRYDEALELLEKALEIarrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 219-331 9.40e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 9.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 219 KGNEAFYSGDYEEAVMYYTRSLSALPTAIAYN-NRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLlALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1333886296 298 EAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
220-330 9.58e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 9.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886296 220 GNEAFYSGDYEEAVMYYTRSLsalpTAIAYNN------RAQAEIKLQRWSSALEDCEKALELDPG--NVKALLRRATTYK 291
Cdd:COG4700    96 ADALLELGRYDEAIELYEEAL----TGIFADDphillgLAQALFELGRYAEALETLEKLIAKNPDfkSSDAHLLYARALE 171

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1333886296 292 HQNKLQEAVDDLRKVLQVEP----------------DNDLAKKTLSEVERDLKNS 330
Cdd:COG4700   172 ALGDLEAAEAELEALARRYSgpearyryakflarqgRTAEAKELLEEILDEAKHM 226
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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