|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-380 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 708.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 1 MAPNLRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLI 80
Cdd:MTH00119 1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 81 RNLHTNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQT 160
Cdd:MTH00119 81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 161 LVEWAWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 241 ASLALFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 321 LSQILFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLYPLAAALENKLLKM 380
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
19-374 |
5.79e-121 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 355.25 E-value: 5.79e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 19 LIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASFFFICIYLH 98
Cdd:COG1290 27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 99 IGRGIYYSSYlnKK----TWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGGFPVDNP 174
Cdd:COG1290 107 MFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 175 MLTWFFALH-FLLPFVIAGLTLVHLTFLHKTGSNNPLGI----PSDCDKIPFHPYYTTKDILGFTLMVFLLASLALFSPI 249
Cdd:COG1290 185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 250 llGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIP--NKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQILFW 327
Cdd:COG1290 265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1338032003 328 ALVANVLVLTWVGSQPVeqPFITIGQLTSFTYFMIILVLYPLAAALE 374
Cdd:COG1290 343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
11-207 |
1.10e-89 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 268.47 E-value: 1.10e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 11 LLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASF 90
Cdd:cd00284 2 KLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 91 FFICIYLHIGRGIYYSSYLN--KKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGG 168
Cdd:cd00284 82 FFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGG 161
|
170 180 190
....*....|....*....|....*....|....*....
gi 1338032003 169 FPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSN 207
Cdd:cd00284 162 FSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-205 |
5.75e-78 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 238.05 E-value: 5.75e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 19 LIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASFFFICIYLH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 99 IGRGIYYS--SYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGGFPVDNPML 176
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 1338032003 177 TWFFALHFLLPFVIAGLTLVHLTFLHKTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
239-297 |
5.32e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 51.72 E-value: 5.32e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1338032003 239 LLASLALFSPILLGHPenftpANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAA 297
Cdd:TIGR01156 50 CVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-380 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 708.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 1 MAPNLRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLI 80
Cdd:MTH00119 1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 81 RNLHTNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQT 160
Cdd:MTH00119 81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 161 LVEWAWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 241 ASLALFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 321 LSQILFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLYPLAAALENKLLKM 380
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-379 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 656.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 1 MApNLRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLI 80
Cdd:MTH00131 1 MA-SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 81 RNLHTNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQT 160
Cdd:MTH00131 80 RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 161 LVEWAWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLL 240
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 241 ASLALFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00131 240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRP 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1338032003 321 LSQILFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLYPLAAALENKLLK 379
Cdd:MTH00131 320 LTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
4-379 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 654.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 4 NLRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNL 83
Cdd:MTH00100 3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 84 HTNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVE 163
Cdd:MTH00100 83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 164 WAWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLLASL 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 244 ALFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQ 323
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1338032003 324 ILFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLYPLAAALENKLLK 379
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-379 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 635.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 1 MAPNLRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLI 80
Cdd:MTH00074 1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 81 RNLHTNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQT 160
Cdd:MTH00074 81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 161 LVEWAWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 241 ASLALFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1338032003 321 LSQILFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLYPLAAALENKLLK 379
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
5-369 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 604.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 5 LRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLH 84
Cdd:MTH00191 1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 85 TNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEW 164
Cdd:MTH00191 81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 165 AWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLLASLA 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 245 LFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1338032003 325 LFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLYPL 369
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
12-367 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 587.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 12 LKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASFF 91
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 92 FICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGGFPV 171
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 172 DNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLLASLALFSPILL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 252 GHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQILFWALVA 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320
|
330 340 350
....*....|....*....|....*....|....*.
gi 1338032003 332 NVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLY 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
5-378 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 581.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 5 LRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLH 84
Cdd:MTH00034 4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 85 TNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEW 164
Cdd:MTH00034 84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 165 AWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLLASLA 244
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 245 LFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQI 324
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1338032003 325 LFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLYPLAAALENKLL 378
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
5-380 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 579.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 5 LRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLH 84
Cdd:MTH00145 5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 85 TNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEW 164
Cdd:MTH00145 85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 165 AWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLLASLA 244
Cdd:MTH00145 165 VWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLV 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 245 LFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQI 324
Cdd:MTH00145 245 LFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQV 324
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1338032003 325 LFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVlYPLAAALENKLLKM 380
Cdd:MTH00145 325 LFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI-LPLVQKLWDNILDY 379
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-379 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 549.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 1 MAPNLRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLI 80
Cdd:MTH00016 1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 81 RNLHTNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQT 160
Cdd:MTH00016 81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 161 LVEWAWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 241 ASLALFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1338032003 321 LSQILFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMiILVLYPLAAALENKLLK 379
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
5-380 |
2.75e-176 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 495.38 E-value: 2.75e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 5 LRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLH 84
Cdd:MTH00022 3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 85 TNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEW 164
Cdd:MTH00022 83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 165 AWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLLASLA 244
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 245 LFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQI 324
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1338032003 325 LFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLYPLAAALENKLLKM 380
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLFK 378
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-380 |
3.47e-176 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 495.00 E-value: 3.47e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 1 MAPNLRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLI 80
Cdd:MTH00053 1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 81 RNLHTNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQT 160
Cdd:MTH00053 81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 161 LVEWAWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 241 ASLALFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 321 LSQILFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLYPLAAALENKLLKM 380
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKL 380
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-379 |
1.68e-165 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 467.86 E-value: 1.68e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 1 MAPNLRKNHKLLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLI 80
Cdd:MTH00224 1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 81 RNLHTNGASFFFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQT 160
Cdd:MTH00224 81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 161 LVEWAWGGFPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 241 ASLALFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1338032003 321 LSQILFWALVANVLVLTWVGSQPVEQPFITIGQLTSFTYFmIILVLYPLAAALENKLLK 379
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF-SYFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
11-375 |
6.60e-132 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 382.75 E-value: 6.60e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 11 LLKIINDaLIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASF 90
Cdd:MTH00033 8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 91 FFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGGFP 170
Cdd:MTH00033 87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 171 VDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLLASLALFSPI- 249
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPRIe 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 250 -LLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQILFWA 328
Cdd:MTH00033 247 tLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWF 326
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1338032003 329 LVANVLVLTWVGSQPV-EQPFITIGQLTSFTYFMIILVLYPLAAALEN 375
Cdd:MTH00033 327 IVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
19-374 |
5.79e-121 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 355.25 E-value: 5.79e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 19 LIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASFFFICIYLH 98
Cdd:COG1290 27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 99 IGRGIYYSSYlnKK----TWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGGFPVDNP 174
Cdd:COG1290 107 MFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 175 MLTWFFALH-FLLPFVIAGLTLVHLTFLHKTGSNNPLGI----PSDCDKIPFHPYYTTKDILGFTLMVFLLASLALFSPI 249
Cdd:COG1290 185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 250 llGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIP--NKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQILFW 327
Cdd:COG1290 265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1338032003 328 ALVANVLVLTWVGSQPVeqPFITIGQLTSFTYFMIILVLYPLAAALE 374
Cdd:COG1290 343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
13-367 |
4.12e-113 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 333.83 E-value: 4.12e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 13 KIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASFFF 92
Cdd:MTH00086 1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 93 ICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGGFPVD 172
Cdd:MTH00086 81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 173 NPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFtLMVFLLASLALFSPILLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 253 HPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSklrSMTFRPLSQILFWALVAN 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316
|
330 340 350
....*....|....*....|....*....|....*
gi 1338032003 333 VLVLTWVGSQPVEQPFITIGQLTSFTYFMIILVLY 367
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
11-207 |
1.10e-89 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 268.47 E-value: 1.10e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 11 LLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASF 90
Cdd:cd00284 2 KLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 91 FFICIYLHIGRGIYYSSYLN--KKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGG 168
Cdd:cd00284 82 FFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGG 161
|
170 180 190
....*....|....*....|....*....|....*....
gi 1338032003 169 FPVDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSN 207
Cdd:cd00284 162 FSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
11-366 |
2.90e-88 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 270.32 E-value: 2.90e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 11 LLKIINDALIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASF 90
Cdd:MTH00046 1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 91 FFICIYLHIGRGIYYSSYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGGFP 170
Cdd:MTH00046 81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 171 VDNPMLTWFFALHFLLPFVIAGLTLVHLTFLHKTGSNNPLGIPSD-CDKIPFHPYYTTKDILGFTLMVFLLASLALFSPI 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 250 LLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGvLALAASILVLFLLPLLHTSKLRSMtfrpLSQILFWAL 329
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLI 315
|
330 340 350
....*....|....*....|....*....|....*..
gi 1338032003 330 VANVLVLTWVGSQPVEQPFITIGQLTSFtyFMIILVL 366
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSV--LMVLLLF 350
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-205 |
5.75e-78 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 238.05 E-value: 5.75e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 19 LIDLPTPSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASFFFICIYLH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 99 IGRGIYYS--SYLNKKTWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGGFPVDNPML 176
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 1338032003 177 TWFFALHFLLPFVIAGLTLVHLTFLHKTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
208-354 |
1.33e-48 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 161.27 E-value: 1.33e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 208 NPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLLASLALFSPILLGHPENFTPANPLVTPPDVKPEWYFLFAHTILRSIPN 287
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1338032003 288 KLGGVLALAASILVLFLLPLLHTSKLRSmTFRPLSQILFWALVANVLVLTWVGSQPVEQPFITIGQL 354
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
89-254 |
1.18e-42 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 146.62 E-value: 1.18e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 89 SFFFICIYLHIGRGIYYSSYLNKK--TWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAW 166
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 167 GGFPVDNPMLTWFFALHF-LLPFVIAGLTLVHLTFLHKTGSNNPLGIPSDCDKIPFHPYYTTKDILGFTLMVFLLASLAL 245
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 1338032003 246 FSPILLGHP 254
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
259-359 |
4.94e-38 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 132.22 E-value: 4.94e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 259 PANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQILFWALVANVLVLTW 338
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 1338032003 339 VGSQPVEQPFITIGQLTSFTY 359
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| petB |
CHL00070 |
cytochrome b6 |
25-210 |
5.15e-30 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 114.82 E-value: 5.15e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 25 PSNISTWWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFSSVAHMCRDVQFGWLIRNLHTNGASFFFICIYLHIGRgIY 104
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR-VY 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338032003 105 YSSYLNKK---TWNVGVILLLTLMATAFVGYILPWGQMSFWGATMITNLFSAMPYIGQTLVEWAWGGFPVDNPMLTWFFA 181
Cdd:CHL00070 106 LTGGFKKPrelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185
|
170 180 190
....*....|....*....|....*....|
gi 1338032003 182 LH-FLLPFVIAGLTLVHLTFLHKTGSNNPL 210
Cdd:CHL00070 186 LHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
230-297 |
7.46e-09 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 54.24 E-value: 7.46e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1338032003 230 ILGftlMVFLLASLALFSPILLGHPenftpANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAA 297
Cdd:CHL00058 44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
237-297 |
3.33e-08 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 52.49 E-value: 3.33e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1338032003 237 VFLLASLALFSPILLGHPenftpANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAA 297
Cdd:COG5679 49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAA 104
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
239-297 |
5.32e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 51.72 E-value: 5.32e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1338032003 239 LLASLALFSPILLGHPenftpANPLVTPPDVKPEWYFLFAHTILRSIPNKLGGVLALAA 297
Cdd:TIGR01156 50 CVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
|
|
| |
